Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00940000166010 #32	ENSGT00670000098059 #33
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00940000166010 #32	ENSGT00670000098059 #33
Degu	MODERN SPECIES	199										ENSODEG00000002273 #16	NWD2 (ENSODEG00000002293) #17	RELL1 (ENSODEG00000002376) #18	ENSODEG00000002408 #19	TBC1D1 (ENSODEG00000002549) #20	ENSODEG00000018891 #21	KLF3 (ENSODEG00000002620) #22	ENSODEG00000002637 #23	FAM114A1 (ENSODEG00000003086) #24	KLHL5 (ENSODEG00000003160) #25	WDR19 (ENSODEG00000003235) #26	RFC1 (ENSODEG00000003452) #27	KLB (ENSODEG00000003829) #28	ENSODEG00000003855 #29	LIAS (ENSODEG00000003971) #30	ENSODEG00000003708 #31	ENSODEG00000003741 #32	UBE2K (ENSODEG00000003840) #33	PDS5A (ENSODEG00000003973) #34	ENSODEG00000019119 #35	N4BP2 (ENSODEG00000004780) #36	ENSODEG00000004818 #37
Long-tailed chinchilla	MODERN SPECIES	150	SLC34A2 (ENSCLAG00000002636)	SEL1L3 (ENSCLAG00000002362)	SMIM20 (ENSCLAG00000002089)	RBPJ (ENSCLAG00000002065)	CCKAR (ENSCLAG00000001729)	TBC1D19 (ENSCLAG00000001699)	STIM2 (ENSCLAG00000002849)	PCDH7 (ENSCLAG00000002605)	ARAP2 (ENSCLAG00000012467)	DTHD1 (ENSCLAG00000011952) ##16	NWD2 (ENSCLAG00000010818) #17	C4orf19 (ENSCLAG00000010706)	RELL1 (ENSCLAG00000010401) #18	PGM2 (ENSCLAG00000010266) #19	TBC1D1 (ENSCLAG00000002236) #20	KLF3 (ENSCLAG00000004459) #22	TLR10 (ENSCLAG00000004336)	TLR1 (ENSCLAG00000017579)	TLR6 (ENSCLAG00000017630)	FAM114A1 (ENSCLAG00000003993) #24	TMEM156 (ENSCLAG00000003928)	KLHL5 (ENSCLAG00000002937) #25	WDR19 (ENSCLAG00000002775) #26	RFC1 (ENSCLAG00000001564) #27	KLB (ENSCLAG00000001476) #28	ENSCLAG00000001418 #29	LIAS (ENSCLAG00000001354) #30	UGDH (ENSCLAG00000001307) #31	SMIM14 (ENSCLAG00000002664)	ENSCLAG00000006068	ENSCLAG00000006013
Guinea pig	MODERN SPECIES	24	RANBP2 (ENSCPOG00000000392)	CCDC138 (ENSCPOG00000000393)	EDAR (ENSCPOG00000011862)	SH3RF3 (ENSCPOG00000001631)	SEPTIN10 (ENSCPOG00000004533)	ENSCPOG00000030940	ENSCPOG00000032789	ENSCPOG00000038259	ENSCPOG00000033829	ENSCPOG00000038611	NWD2 (ENSCPOG00000008345) #17	C4orf19 (ENSCPOG00000035167)	RELL1 (ENSCPOG00000009761) #18	PGM2 (ENSCPOG00000013611) #19	TBC1D1 (ENSCPOG00000013615) #20	KLF3 (ENSCPOG00000030471) #22	TLR10 (ENSCPOG00000015283)	TLR1 (ENSCPOG00000012205)	TLR6 (ENSCPOG00000005088)	FAM114A1 (ENSCPOG00000013554) #24	TMEM156 (ENSCPOG00000013560)	KLHL5 (ENSCPOG00000004478) #25	WDR19 (ENSCPOG00000004240) #26	RFC1 (ENSCPOG00000004248) #27	KLB (ENSCPOG00000004539) #28	ENSCPOG00000004543 #29	LIAS (ENSCPOG00000004547) #30	UGDH (ENSCPOG00000004550) #31	ENSCPOG00000039840 #32	UBE2K (ENSCPOG00000014798) #33	ENSCPOG00000023886
Naked mole-rat female	MODERN SPECIES	1	ENSHGLG00000037767	NWD2 (ENSHGLG00000000298) #17	ENSHGLG00000040844	ENSHGLG00000040492	ENSHGLG00000043452 #18	PGM2 (ENSHGLG00000001842) #19	ENSHGLG00000002323	ENSHGLG00000003063	ENSHGLG00000000606	ENSHGLG00000019811	ENSHGLG00000033549	ENSHGLG00000034348	ENSHGLG00000043517 #20	ENSHGLG00000044532 #20	ENSHGLG00000019798	KLF3 (ENSHGLG00000049437) #22	ENSHGLG00000000855	ENSHGLG00000019856	ENSHGLG00000001742	TLR6 (ENSHGLG00000050436)	FAM114A1 (ENSHGLG00000002258) #24	TMEM156 (ENSHGLG00000002626)	ENSHGLG00000033489	KLHL5 (ENSHGLG00000001944) #25	WDR19 (ENSHGLG00000002756) #26	ENSHGLG00000002546 #27	ENSHGLG00000032109	KLB (ENSHGLG00000002389) #28	ENSHGLG00000002318 #29	LIAS (ENSHGLG00000002264) #30	UGDH (ENSHGLG00000002204) #31