Euarchontoglires_A	ANCESTRAL SPECIES	9	ENSGT01040000242873	ENSGT00390000002398	ENSGT00390000005197.a	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Glires	ANCESTRAL SPECIES	8	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Rodentia	ANCESTRAL SPECIES	13	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Rodentia_A	ANCESTRAL SPECIES	20	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Hystricomorpha	ANCESTRAL SPECIES	26	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Hystricomorpha_a	ANCESTRAL SPECIES	23	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00940000166010 #32	ENSGT00670000098059 #33
Hystricomorpha_b	ANCESTRAL SPECIES	37	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.b.a #29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00940000166010 #32	ENSGT00670000098059 #33
Degu	MODERN SPECIES	199										ENSODEG00000002273 #16	NWD2 (ENSODEG00000002293) #17	RELL1 (ENSODEG00000002376) #18	ENSODEG00000002408 #19	TBC1D1 (ENSODEG00000002549) #20	ENSODEG00000018891 #21	KLF3 (ENSODEG00000002620) #22	ENSODEG00000002637 #23	FAM114A1 (ENSODEG00000003086) #24	KLHL5 (ENSODEG00000003160) #25	WDR19 (ENSODEG00000003235) #26	RFC1 (ENSODEG00000003452) #27	KLB (ENSODEG00000003829) #28	ENSODEG00000003855 #29	LIAS (ENSODEG00000003971) #30	ENSODEG00000003708 #31	ENSODEG00000003741 #32	UBE2K (ENSODEG00000003840) #33	PDS5A (ENSODEG00000003973) #34	ENSODEG00000019119 #35	N4BP2 (ENSODEG00000004780) #36	ENSODEG00000004818 #37
Long-tailed chinchilla	MODERN SPECIES	150	SLC34A2 (ENSCLAG00000002636)	SEL1L3 (ENSCLAG00000002362)	SMIM20 (ENSCLAG00000002089)	RBPJ (ENSCLAG00000002065)	CCKAR (ENSCLAG00000001729)	TBC1D19 (ENSCLAG00000001699)	STIM2 (ENSCLAG00000002849)	PCDH7 (ENSCLAG00000002605)	ARAP2 (ENSCLAG00000012467)	DTHD1 (ENSCLAG00000011952) ##16	NWD2 (ENSCLAG00000010818) #17	C4orf19 (ENSCLAG00000010706)	RELL1 (ENSCLAG00000010401) #18	PGM2 (ENSCLAG00000010266) #19	TBC1D1 (ENSCLAG00000002236) #20	KLF3 (ENSCLAG00000004459) #22	TLR10 (ENSCLAG00000004336)	TLR1 (ENSCLAG00000017579)	TLR6 (ENSCLAG00000017630)	FAM114A1 (ENSCLAG00000003993) #24	TMEM156 (ENSCLAG00000003928)	KLHL5 (ENSCLAG00000002937) #25	WDR19 (ENSCLAG00000002775) #26	RFC1 (ENSCLAG00000001564) #27	KLB (ENSCLAG00000001476) #28	ENSCLAG00000001418 #29	LIAS (ENSCLAG00000001354) #30	UGDH (ENSCLAG00000001307) #31	SMIM14 (ENSCLAG00000002664)	ENSCLAG00000006068	ENSCLAG00000006013
Guinea pig	MODERN SPECIES	24	RANBP2 (ENSCPOG00000000392)	CCDC138 (ENSCPOG00000000393)	EDAR (ENSCPOG00000011862)	SH3RF3 (ENSCPOG00000001631)	SEPTIN10 (ENSCPOG00000004533)	ENSCPOG00000030940	ENSCPOG00000032789	ENSCPOG00000038259	ENSCPOG00000033829	ENSCPOG00000038611	NWD2 (ENSCPOG00000008345) #17	C4orf19 (ENSCPOG00000035167)	RELL1 (ENSCPOG00000009761) #18	PGM2 (ENSCPOG00000013611) #19	TBC1D1 (ENSCPOG00000013615) #20	KLF3 (ENSCPOG00000030471) #22	TLR10 (ENSCPOG00000015283)	TLR1 (ENSCPOG00000012205)	TLR6 (ENSCPOG00000005088)	FAM114A1 (ENSCPOG00000013554) #24	TMEM156 (ENSCPOG00000013560)	KLHL5 (ENSCPOG00000004478) #25	WDR19 (ENSCPOG00000004240) #26	RFC1 (ENSCPOG00000004248) #27	KLB (ENSCPOG00000004539) #28	ENSCPOG00000004543 #29	LIAS (ENSCPOG00000004547) #30	UGDH (ENSCPOG00000004550) #31	ENSCPOG00000039840 #32	UBE2K (ENSCPOG00000014798) #33	ENSCPOG00000023886
Naked mole-rat female	MODERN SPECIES	1	ENSHGLG00000037767	NWD2 (ENSHGLG00000000298) #17	ENSHGLG00000040844	ENSHGLG00000040492	ENSHGLG00000043452 #18	PGM2 (ENSHGLG00000001842) #19	ENSHGLG00000002323	ENSHGLG00000003063	ENSHGLG00000000606	ENSHGLG00000019811	ENSHGLG00000033549	ENSHGLG00000034348	ENSHGLG00000043517 #20	ENSHGLG00000044532 #20	ENSHGLG00000019798	KLF3 (ENSHGLG00000049437) #22	ENSHGLG00000000855	ENSHGLG00000019856	ENSHGLG00000001742	TLR6 (ENSHGLG00000050436)	FAM114A1 (ENSHGLG00000002258) #24	TMEM156 (ENSHGLG00000002626)	ENSHGLG00000033489	KLHL5 (ENSHGLG00000001944) #25	WDR19 (ENSHGLG00000002756) #26	ENSHGLG00000002546 #27	ENSHGLG00000032109	KLB (ENSHGLG00000002389) #28	ENSHGLG00000002318 #29	LIAS (ENSHGLG00000002264) #30	UGDH (ENSHGLG00000002204) #31
Sciuridae	ANCESTRAL SPECIES	19	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00990000210295	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a.b ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33
Marmotini	ANCESTRAL SPECIES	26	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a.b ##29	ENSGT00390000015224.c.b.a.l ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294.k.a	ENSGT00670000098059 #33
Marmotini_b	ANCESTRAL SPECIES	48						ENSGT01030000234945	ENSGT00940000157221	ENSGT00950000182841.b.a.a.b.b.p.a	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a.b ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294.k.a	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Arctic ground squirrel	MODERN SPECIES	2						ENSUPAG00010016796	PCDH7 (ENSUPAG00010016798)	ENSUPAG00010016821	ARAP2 (ENSUPAG00010016832)	DTHD1 (ENSUPAG00010016950) ##16	NWD2 (ENSUPAG00010016964) #17	C4orf19 (ENSUPAG00010016983)	RELL1 (ENSUPAG00010016993) #18	PGM2 (ENSUPAG00010017012) #19	TBC1D1 (ENSUPAG00010017027) #20	KLF3 (ENSUPAG00010017209) #22	TLR10 (ENSUPAG00010017218)	TLR1 (ENSUPAG00010017233)	TLR6 (ENSUPAG00010017235)	FAM114A1 (ENSUPAG00010017240) #24	TMEM156 (ENSUPAG00010017254)	KLHL5 (ENSUPAG00010017266) #25	WDR19 (ENSUPAG00010017295) #26	RFC1 (ENSUPAG00010017359) #27	KLB (ENSUPAG00010018497) #28	ENSUPAG00010018508 ##29	LIAS (ENSUPAG00010018541) #30	UGDH (ENSUPAG00010018571) #31	ENSUPAG00010018587	UBE2K (ENSUPAG00010018605) #33	PDS5A (ENSUPAG00010018683) #34
Squirrel	MODERN SPECIES	82						PCDH7 (ENSSTOG00000009192)	ENSSTOG00000029131	ENSSTOG00000028351	ARAP2 (ENSSTOG00000019405)	DTHD1 (ENSSTOG00000003003) ##16	NWD2 (ENSSTOG00000019543) #17	C4orf19 (ENSSTOG00000003425)	RELL1 (ENSSTOG00000001374) #18	PGM2 (ENSSTOG00000008176) #19	ENSSTOG00000020687 #20	KLF3 (ENSSTOG00000010881) #22	TLR1 (ENSSTOG00000021581)	TLR6 (ENSSTOG00000025480)	FAM114A1 (ENSSTOG00000001171) #24	TMEM156 (ENSSTOG00000004246)	KLHL5 (ENSSTOG00000007013) #25	WDR19 (ENSSTOG00000007054) #26	RFC1 (ENSSTOG00000007088) #27	KLB (ENSSTOG00000002069) #28	ENSSTOG00000002077 ##29	LIAS (ENSSTOG00000002082) #30	UGDH (ENSSTOG00000002096) #31	SMIM14 (ENSSTOG00000034581)	UBE2K (ENSSTOG00000012447) #33	PDS5A (ENSSTOG00000012451) #34	N4BP2 (ENSSTOG00000020354) #36
Alpin marmot	MODERN SPECIES	9	SMIM20 (ENSMMMG00000017386)	RBPJ (ENSMMMG00000017407)	CCKAR (ENSMMMG00000017438)	STIM2 (ENSMMMG00000017470)	ENSMMMG00000017503	ENSMMMG00000017519	ARAP2 (ENSMMMG00000017527)	DTHD1 (ENSMMMG00000017544) ##16	NWD2 (ENSMMMG00000017559) #17	ENSMMMG00000017574	C4orf19 (ENSMMMG00000017577)	RELL1 (ENSMMMG00000017587) #18	PGM2 (ENSMMMG00000017606) #19	TBC1D1 (ENSMMMG00000017620) #20	ENSMMMG00000017716	KLF3 (ENSMMMG00000017721) #22	TLR10 (ENSMMMG00000017725)	TLR1 (ENSMMMG00000017739)	TLR6 (ENSMMMG00000017761)	FAM114A1 (ENSMMMG00000017765) #24	TMEM156 (ENSMMMG00000017773)	KLHL5 (ENSMMMG00000017784) #25	WDR19 (ENSMMMG00000017829) #26	RFC1 (ENSMMMG00000017905) #27	KLB (ENSMMMG00000017911) #28	ENSMMMG00000017920	ENSMMMG00000017936 ##29	LIAS (ENSMMMG00000017957) #30	UGDH (ENSMMMG00000017978) #31	ENSMMMG00000018002	UBE2K (ENSMMMG00000018022) #33
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005011695	ENSSVLG00005011631	ENSSVLG00005011572	PCDH7 (ENSSVLG00005011515)	ENSSVLG00005011423	ARAP2 (ENSSVLG00005010880)	DTHD1 (ENSSVLG00005010509) ##16	ENSSVLG00005010441 #17	ENSSVLG00005010374 #17	C4orf19 (ENSSVLG00005010352)	RELL1 (ENSSVLG00005010318) #18	ENSSVLG00005010293	PGM2 (ENSSVLG00005010275) #19	TBC1D1 (ENSSVLG00005010172) #20	ENSSVLG00005010135	ENSSVLG00005010086 #22	ENSSVLG00005010070	TLR10 (ENSSVLG00005010051)	TLR1 (ENSSVLG00005010028)	TLR6 (ENSSVLG00005009982)	ENSSVLG00005009942	TMEM156 (ENSSVLG00005009879)	KLHL5 (ENSSVLG00005009665) #25	WDR19 (ENSSVLG00005009349) #26	RFC1 (ENSSVLG00005009235) #27	KLB (ENSSVLG00005009120) #28	ENSSVLG00005009038 ##29	LIAS (ENSSVLG00005008848) #30	UGDH (ENSSVLG00005008677) #31	ENSSVLG00005008623	ENSSVLG00005008568
Eurasian red squirrel	MODERN SPECIES	57																ENSSVLG00005020536 #22	ENSSVLG00005020551	ENSSVLG00005020569	ENSSVLG00005020585	ENSSVLG00005020631	ENSSVLG00005020710
Rodentia_B	ANCESTRAL SPECIES	19	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Kangaroo rat	MODERN SPECIES	327	Rbpj (ENSDORG00000006352)	Cckar (ENSDORG00000006353)	Tbc1d19 (ENSDORG00000013790)	Stim2 (ENSDORG00000016610)	ENSDORG00000028755	ENSDORG00000008260	Pcdh7 (ENSDORG00000029117)	ENSDORG00000028110	Arap2 (ENSDORG00000008160)	Dthd1 (ENSDORG00000001578) ##16	Nwd2 (ENSDORG00000023758) #17	0610040J01Rik (ENSDORG00000011992)	Rell1 (ENSDORG00000008354) #18	Pgm2 (ENSDORG00000027647) #19	Tbc1d1 (ENSDORG00000010269) #20	Klf3 (ENSDORG00000023213) #22	Fam114a1 (ENSDORG00000010517) #24	ENSDORG00000010522	Klhl5 (ENSDORG00000010524) #25	Wdr19 (ENSDORG00000010525) #26	Rfc1 (ENSDORG00000010527) #27	Klb (ENSDORG00000005905) #28	ENSDORG00000001088 ##29	ENSDORG00000001091 #30	ENSDORG00000024762 #32	ENSDORG00000030000	ENSDORG00000024976 #33	Pds5a (ENSDORG00000009144) #34	ENSDORG00000027390	ENSDORG00000029761	N4bp2 (ENSDORG00000000893) #36
Myomorpha	ANCESTRAL SPECIES	19	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Lesser Egyptian jerboa	DUPLICATION
Lesser Egyptian jerboa	MODERN SPECIES	68														ENSJJAG00000017499 #19	Tbc1d1 (ENSJJAG00000022049) #20	ENSJJAG00000013282 #22	ENSJJAG00000021605	Fam114a1 (ENSJJAG00000022920) #24	Klhl5 (ENSJJAG00000006854) #25	Wdr19 (ENSJJAG00000018262) #26	Rfc1 (ENSJJAG00000015683) #27	ENSJJAG00000009804 #28	ENSJJAG00000012957 #30	ENSJJAG00000000380 #30	ENSJJAG00000005695 #31	ENSJJAG00000018695 #32	ENSJJAG00000020106 #33	Pds5a (ENSJJAG00000023708) #34	ENSJJAG00000002005	Rhoh (ENSJJAG00000005526)	Rbm47 (ENSJJAG00000013823)
Lesser Egyptian jerboa	MODERN SPECIES	96	Dcstamp (ENSJJAG00000011201)	Dpys (ENSJJAG00000008928)	Lrp12 (ENSJJAG00000020477)	Gimd1 (ENSJJAG00000017692)	Aimp1 (ENSJJAG00000016873)	ENSJJAG00000014460	Npnt (ENSJJAG00000007539)	Gstcd (ENSJJAG00000021904)	ENSJJAG00000015299	Arhgef38 (ENSJJAG00000014797)	Ppa2 (ENSJJAG00000001408)	Tet2 (ENSJJAG00000019545)	ENSJJAG00000017297	Cxxc4 (ENSJJAG00000011738)	Tacr3 (ENSJJAG00000023236)	ENSJJAG00000015412 #22	Bdh2 (ENSJJAG00000014275)	Slc9b2 (ENSJJAG00000008729)	ENSJJAG00000014490	Cisd2 (ENSJJAG00000005022)	Ube2d3 (ENSJJAG00000000457)	Manba (ENSJJAG00000012511)	Nfkb1 (ENSJJAG00000015958)	ENSJJAG00000014552	Slc39a8 (ENSJJAG00000009177)	Bank1 (ENSJJAG00000019124)	Ppp3ca (ENSJJAG00000011071)	ENSJJAG00000000695
Muroidea	ANCESTRAL SPECIES	17	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Upper Galilee mountains blind mole rat	MODERN SPECIES	839										ENSNGAG00000004119	Nwd2 (ENSNGAG00000013807) #17	0610040J01Rik (ENSNGAG00000014223)	Rell1 (ENSNGAG00000001591) #18	Pgm2 (ENSNGAG00000003080) #19	Tbc1d1 (ENSNGAG00000012649) #20	Klf3 (ENSNGAG00000011272) #22	Tlr1 (ENSNGAG00000022810)	Fam114a1 (ENSNGAG00000024040) #24	Tmem156 (ENSNGAG00000020186)	Klhl5 (ENSNGAG00000004086) #25	Wdr19 (ENSNGAG00000003593) #26	Rfc1 (ENSNGAG00000010064) #27	Klb (ENSNGAG00000022684) #28	ENSNGAG00000023169 ##29	ENSNGAG00000010156 #30	ENSNGAG00000005276 #30	Ugdh (ENSNGAG00000008002) #31	ENSNGAG00000019916 #32	Ube2k (ENSNGAG00000022177) #33
Muroidea_A	ANCESTRAL SPECIES	13	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Murinae	ANCESTRAL SPECIES	12	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Mus	ANCESTRAL SPECIES	14	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00940000166010 #32	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00940000166010 #32	ENSGT00390000018294	ENSGT00670000098059.q #33	ENSGT00940000155155 #34
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00940000166010 #32	ENSGT00390000018294	ENSGT00670000098059.q #33	ENSGT00940000155155 #34
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00530000063435.a.p	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00940000166010 #32	ENSGT00390000018294	ENSGT00670000098059.q #33	ENSGT00940000155155 #34
Steppe mouse	MODERN SPECIES	3316														Tbc1d1 (ENSMSIG00000010885) #20	ENSMSIG00000010865	Klf3 (ENSMSIG00000010840) #22	Tlr1 (ENSMSIG00000010831)	Tlr6 (ENSMSIG00000010824)	Fam114a1 (ENSMSIG00000010803) #24	Tmem156 (ENSMSIG00000010754)	Klhl5 (ENSMSIG00000010666) #25	Wdr19 (ENSMSIG00000010456) #26	Rfc1 (ENSMSIG00000010211) #27	Klb (ENSMSIG00000010181) #28	ENSMSIG00000010100 ##29	Lias (ENSMSIG00000010054) #30	Ugdh (ENSMSIG00000010023) #31	ENSMSIG00000010011	ENSMSIG00000009949	ENSMSIG00000009795 #33	Pds5a (ENSMSIG00000009696) #34
spretus	MODERN SPECIES	14	Sel1l3 (MGP_SPRETEiJ_G0028218)	Smim20 (MGP_SPRETEiJ_G0028219)	MGP_SPRETEiJ_G0028220	Cckar (MGP_SPRETEiJ_G0028221)	Tbc1d19 (MGP_SPRETEiJ_G0028222)	Stim2 (MGP_SPRETEiJ_G0028223)	Pcdh7 (MGP_SPRETEiJ_G0028224)	G6pd2 (MGP_SPRETEiJ_G0028225)	Arap2 (MGP_SPRETEiJ_G0028226)	Dthd1 (MGP_SPRETEiJ_G0028227) ##16	Nwd2 (MGP_SPRETEiJ_G0028228) #17	0610040J01Rik (MGP_SPRETEiJ_G0028229)	Rell1 (MGP_SPRETEiJ_G0028230) #18	Pgm2 (MGP_SPRETEiJ_G0028231) #19	Tbc1d1 (MGP_SPRETEiJ_G0028232) #20	Klf3 (MGP_SPRETEiJ_G0028233) #22	Tlr6 (MGP_SPRETEiJ_G0028235)	Fam114a1 (MGP_SPRETEiJ_G0028236) #24	MGP_SPRETEiJ_G0028237	Klhl5 (MGP_SPRETEiJ_G0028238) #25	Wdr19 (MGP_SPRETEiJ_G0028239) #26	Rfc1 (MGP_SPRETEiJ_G0028240) #27	Klb (MGP_SPRETEiJ_G0028241) #28	MGP_SPRETEiJ_G0028242 ##29	Lias (MGP_SPRETEiJ_G0028243) #30	Ugdh (MGP_SPRETEiJ_G0028244) #31	MGP_SPRETEiJ_G0028245 #32	Smim14 (MGP_SPRETEiJ_G0028246)	Ube2k (MGP_SPRETEiJ_G0028247) #33	Pds5a (MGP_SPRETEiJ_G0028248) #34	N4bp2 (MGP_SPRETEiJ_G0028249) #36
Mouse	MODERN SPECIES	14	Sel1l3 (ENSMUSG00000029189)	Smim20 (ENSMUSG00000061461)	Rbpj (ENSMUSG00000039191)	Cckar (ENSMUSG00000029193)	Tbc1d19 (ENSMUSG00000039178)	Stim2 (ENSMUSG00000039156)	Pcdh7 (ENSMUSG00000029108)	G6pd2 (ENSMUSG00000089992)	Arap2 (ENSMUSG00000037999)	Dthd1 (ENSMUSG00000090326) ##16	Nwd2 (ENSMUSG00000090061) #17	0610040J01Rik (ENSMUSG00000060512)	Rell1 (ENSMUSG00000047881) #18	Pgm2 (ENSMUSG00000029171) #19	Tbc1d1 (ENSMUSG00000029174) #20	Klf3 (ENSMUSG00000029178) #22	Tlr1 (ENSMUSG00000044827)	Tlr6 (ENSMUSG00000051498)	Fam114a1 (ENSMUSG00000029185) #24	Tmem156 (ENSMUSG00000037913)	Klhl5 (ENSMUSG00000054920) #25	Wdr19 (ENSMUSG00000037890) #26	Rfc1 (ENSMUSG00000029191) #27	Klb (ENSMUSG00000029195) #28	Rpl9 (ENSMUSG00000047215) ##29	Lias (ENSMUSG00000029199) #30	Ugdh (ENSMUSG00000029201) #31	Gm43552 (ENSMUSG00000105835)	Smim14 (ENSMUSG00000037822)	Ube2k (ENSMUSG00000029203) #33	Pds5a (ENSMUSG00000029202) #34
Ryukyu mouse	MODERN SPECIES	14	Sel1l3 (MGP_CAROLIEiJ_G0027223)	Smim20 (MGP_CAROLIEiJ_G0027224)	MGP_CAROLIEiJ_G0027225	Cckar (MGP_CAROLIEiJ_G0027226)	Tbc1d19 (MGP_CAROLIEiJ_G0027227)	Stim2 (MGP_CAROLIEiJ_G0027228)	Pcdh7 (MGP_CAROLIEiJ_G0027229)	G6pd2 (MGP_CAROLIEiJ_G0027230)	Arap2 (MGP_CAROLIEiJ_G0027231)	Dthd1 (MGP_CAROLIEiJ_G0027232) ##16	Nwd2 (MGP_CAROLIEiJ_G0027233) #17	0610040J01Rik (MGP_CAROLIEiJ_G0027234)	Rell1 (MGP_CAROLIEiJ_G0027235) #18	Pgm2 (MGP_CAROLIEiJ_G0027236) #19	MGP_CAROLIEiJ_G0027237	Klf3 (MGP_CAROLIEiJ_G0027238) #22	Tlr1 (MGP_CAROLIEiJ_G0027239)	Tlr6 (MGP_CAROLIEiJ_G0027240)	Fam114a1 (MGP_CAROLIEiJ_G0027241) #24	MGP_CAROLIEiJ_G0027242	Klhl5 (MGP_CAROLIEiJ_G0027243) #25	Wdr19 (MGP_CAROLIEiJ_G0027244) #26	Rfc1 (MGP_CAROLIEiJ_G0027245) #27	Klb (MGP_CAROLIEiJ_G0027246) #28	MGP_CAROLIEiJ_G0027247 ##29	Lias (MGP_CAROLIEiJ_G0027248) #30	Ugdh (MGP_CAROLIEiJ_G0027249) #31	MGP_CAROLIEiJ_G0027250 #32	Smim14 (MGP_CAROLIEiJ_G0027251)	Ube2k (MGP_CAROLIEiJ_G0027252) #33	Pds5a (MGP_CAROLIEiJ_G0027253) #34
Shrew mouse	MODERN SPECIES	4	Sel1l3 (MGP_PahariEiJ_G0017005)	Smim20 (MGP_PahariEiJ_G0017006)	Rbpj (MGP_PahariEiJ_G0017007)	Cckar (MGP_PahariEiJ_G0017008)	Tbc1d19 (MGP_PahariEiJ_G0017009)	Stim2 (MGP_PahariEiJ_G0017010)	Pcdh7 (MGP_PahariEiJ_G0017011)	G6pd2 (MGP_PahariEiJ_G0017012)	Arap2 (MGP_PahariEiJ_G0017013)	Dthd1 (MGP_PahariEiJ_G0017014) ##16	Nwd2 (MGP_PahariEiJ_G0017015) #17	0610040J01Rik (MGP_PahariEiJ_G0017016)	Rell1 (MGP_PahariEiJ_G0017017) #18	Pgm2 (MGP_PahariEiJ_G0017018) #19	Tbc1d1 (MGP_PahariEiJ_G0017019) #20	Klf3 (MGP_PahariEiJ_G0017020) #22	Tlr1 (MGP_PahariEiJ_G0017021)	Tlr6 (MGP_PahariEiJ_G0017022)	Fam114a1 (MGP_PahariEiJ_G0017023) #24	MGP_PahariEiJ_G0017024	Klhl5 (MGP_PahariEiJ_G0017025) #25	Wdr19 (MGP_PahariEiJ_G0017026) #26	Rfc1 (MGP_PahariEiJ_G0017027) #27	Klb (MGP_PahariEiJ_G0017028) #28	MGP_PahariEiJ_G0017029 ##29	Lias (MGP_PahariEiJ_G0017030) #30	Ugdh (MGP_PahariEiJ_G0017031) #31	MGP_PahariEiJ_G0017032 #32	Smim14 (MGP_PahariEiJ_G0017033)	Ube2k (MGP_PahariEiJ_G0017034) #33	Pds5a (MGP_PahariEiJ_G0017035) #34
Rat	MODERN SPECIES	5	ENSRNOG00000067114	Pcdh7 (ENSRNOG00000012367)	Pcdh7 (ENSRNOG00000063828)	ENSRNOG00000067336	AABR07015346.1 (ENSRNOG00000027791)	ENSRNOG00000065159	LOC108348204 (ENSRNOG00000063351)	ENSRNOG00000065472	Arap2 (ENSRNOG00000056826)	AABR07015180.1 (ENSRNOG00000026134)	Nwd2 (ENSRNOG00000051837) #17	LOC498368 (ENSRNOG00000002191)	Rell1 (ENSRNOG00000002192) #18	Pgm2 (ENSRNOG00000002185) #19	Tbc1d1 (ENSRNOG00000002180) #20	Klf3 (ENSRNOG00000002163) #22	Tlr10 (ENSRNOG00000067138)	Tlr1 (ENSRNOG00000038722)	Tlr6 (ENSRNOG00000002161)	Fam114a1 (ENSRNOG00000026504) #24	Tmem156 (ENSRNOG00000026518)	Klhl5 (ENSRNOG00000008421) #25	LOC100910864 (ENSRNOG00000070747)	AC109707.1 (ENSRNOG00000049527)	Wdr19 (ENSRNOG00000002932) #26	Rfc1 (ENSRNOG00000002855) #27	Klb (ENSRNOG00000002834) #28	Rpl9-ps30 (ENSRNOG00000026716) #29	Lias (ENSRNOG00000002759) #30	Ugdh (ENSRNOG00000002643) #31	Smim14 (ENSRNOG00000066377)
Cricetidae	ANCESTRAL SPECIES	14	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Cricetinae	ANCESTRAL SPECIES	9	ENSGT00950000183177.a.a.b	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34
Golden Hamster	MODERN SPECIES	663						ENSMAUG00000015885	ENSMAUG00000016216	Pcdh7 (ENSMAUG00000010506)	Arap2 (ENSMAUG00000008087)	Dthd1 (ENSMAUG00000005079) ##16	Nwd2 (ENSMAUG00000004008) #17	0610040J01Rik (ENSMAUG00000001342)	Rell1 (ENSMAUG00000015257) #18	Pgm2 (ENSMAUG00000009577) #19	Tbc1d1 (ENSMAUG00000010694) #20	Klf3 (ENSMAUG00000000706) #22	Tlr1 (ENSMAUG00000000142)	Tlr6 (ENSMAUG00000007865)	Fam114a1 (ENSMAUG00000001743) #24	Tmem156 (ENSMAUG00000000185)	Klhl5 (ENSMAUG00000019052) #25	ENSMAUG00000008307	ENSMAUG00000004466 #26	Rfc1 (ENSMAUG00000015509) #27	Klb (ENSMAUG00000014175) #28	ENSMAUG00000001435 ##29	Lias (ENSMAUG00000015722) #30	Smim14 (ENSMAUG00000018507)	ENSMAUG00000013941 #33	Pds5a (ENSMAUG00000010985) #34	N4bp2 (ENSMAUG00000012591) #36
Chinese hamster chok1gshd	MODERN SPECIES	44	ENSCGRG00001002941	ENSCGRG00001005160	ENSCGRG00001012415	Pcdh7 (ENSCGRG00001017637)	ENSCGRG00001018983	ENSCGRG00001009672	Arap2 (ENSCGRG00001019683)	Dthd1 (ENSCGRG00001007560) ##16	ENSCGRG00001015981	ENSCGRG00001005701	Nwd2 (ENSCGRG00001014796) #17	0610040J01Rik (ENSCGRG00001016782)	ENSCGRG00001017215 #18	Pgm2 (ENSCGRG00001019866) #19	Tbc1d1 (ENSCGRG00001007939) #20	Klf3 (ENSCGRG00001011019) #22	ENSCGRG00001011588	Tlr1 (ENSCGRG00001012288)	Tlr6 (ENSCGRG00001012094)	Fam114a1 (ENSCGRG00001020236) #24	Tmem156 (ENSCGRG00001022810)	Klhl5 (ENSCGRG00001010990) #25	Wdr19 (ENSCGRG00001023589) #26	Rfc1 (ENSCGRG00001016960) #27	Klb (ENSCGRG00001018998) #28	ENSCGRG00001019675	ENSCGRG00001020965 ##29	Lias (ENSCGRG00001015441) #30	ENSCGRG00001016762 #31	ENSCGRG00001019287	Ube2k (ENSCGRG00001021617) #33
Cricetidae_B	ANCESTRAL SPECIES	9	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000162884	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.b.a.k.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33	ENSGT00940000155155 #34	ENSGT00940000160604 #36	ENSGT00940000160078
Prairie vole	MODERN SPECIES	349	ENSMOCG00000004908	ENSMOCG00000017801	Pcdh7 (ENSMOCG00000019554)	ENSMOCG00000016594	ENSMOCG00000017532	Arap2 (ENSMOCG00000008948)	Dthd1 (ENSMOCG00000019885) ##16	Nwd2 (ENSMOCG00000002726) #17	ENSMOCG00000004195	0610040J01Rik (ENSMOCG00000010145)	Rell1 (ENSMOCG00000013662) #18	Pgm2 (ENSMOCG00000002142) #19	Tbc1d1 (ENSMOCG00000000703) #20	ENSMOCG00000020501	ENSMOCG00000005398	ENSMOCG00000002752 #22	Fam114a1 (ENSMOCG00000003632) #24	Tmem156 (ENSMOCG00000011114)	Klhl5 (ENSMOCG00000000606) #25	Wdr19 (ENSMOCG00000017282) #26	Rfc1 (ENSMOCG00000023036) #27	Klb (ENSMOCG00000022619) #28	ENSMOCG00000013758 ##29	Lias (ENSMOCG00000004333) #30	Ugdh (ENSMOCG00000021559) #31	Ube2k (ENSMOCG00000016915) #33	Pds5a (ENSMOCG00000018554) #34	N4bp2 (ENSMOCG00000005150) #36	Rhoh (ENSMOCG00000002547)	Chrna9 (ENSMOCG00000013218)	Rbm47 (ENSMOCG00000021170)
Northern American deer mouse	MODERN SPECIES	1	ENSPEMG00000008427	Pcdh7 (ENSPEMG00000012079)	ENSPEMG00000025746	ENSPEMG00000026158	ENSPEMG00000029628	ENSPEMG00000014650	ENSPEMG00000029590	Arap2 (ENSPEMG00000017210)	Dthd1 (ENSPEMG00000018338) ##16	Nwd2 (ENSPEMG00000018695) #17	0610040J01Rik (ENSPEMG00000018765)	Rell1 (ENSPEMG00000019052) #18	Pgm2 (ENSPEMG00000000146) #19	Tbc1d1 (ENSPEMG00000001751) #20	ENSPEMG00000027929	Klf3 (ENSPEMG00000026686) #22	Tlr1 (ENSPEMG00000005760)	Fam114a1 (ENSPEMG00000007358) #24	Tmem156 (ENSPEMG00000008551)	Klhl5 (ENSPEMG00000010526) #25	Wdr19 (ENSPEMG00000012819) #26	ENSPEMG00000025712 #27	Klb (ENSPEMG00000017430) #28	ENSPEMG00000017878 ##29	Lias (ENSPEMG00000000012) #30	Ugdh (ENSPEMG00000000939) #31	Smim14 (ENSPEMG00000024594)	ENSPEMG00000024481	Ube2k (ENSPEMG00000006216) #33	Pds5a (ENSPEMG00000008929) #34	N4bp2 (ENSPEMG00000010084) #36
Lagomorpha	ANCESTRAL SPECIES	3	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT01030000234945	ENSGT00940000157221	ENSGT00940000160197	ENSGT00940000153404.b ##16	ENSGT00940000153648.b #17	ENSGT00390000013778	ENSGT00940000159709 #18	ENSGT00940000156247 #19	ENSGT00940000157949 #20	ENSGT00940000157456 #22	ENSGT00940000163662	ENSGT00940000162884	ENSGT00940000162201	ENSGT00390000010054.b #24	ENSGT00390000017929	ENSGT00940000155358 #25	ENSGT00590000083165 #26	ENSGT00730000111066 #27	ENSGT00940000157489 #28	ENSGT00390000015224.c.a.a.b.b ##29	ENSGT00390000015224.c.a.a.b.a.a ##29	ENSGT00390000006234 #30	ENSGT00390000015355 #31	ENSGT00390000018294	ENSGT00670000098059 #33
Rabbit	MODERN SPECIES	11	ENSOCUG00000030289	ENSOCUG00000035672	PCDH7 (ENSOCUG00000000290)	ENSOCUG00000023563	ENSOCUG00000010124	ENSOCUG00000036228	ARAP2 (ENSOCUG00000015669)	DTHD1 (ENSOCUG00000001098) ##16	NWD2 (ENSOCUG00000012238) #17	C4orf19 (ENSOCUG00000003831)	RELL1 (ENSOCUG00000003419) #18	ENSOCUG00000036928	PGM2 (ENSOCUG00000013740) #19	TBC1D1 (ENSOCUG00000012442) #20	ENSOCUG00000022888	KLF3 (ENSOCUG00000003698) #22	TLR10 (ENSOCUG00000003701)	TLR1 (ENSOCUG00000001824)	TLR6 (ENSOCUG00000006031)	FAM114A1 (ENSOCUG00000009603) #24	TMEM156 (ENSOCUG00000000579)	KLHL5 (ENSOCUG00000010438) #25	WDR19 (ENSOCUG00000004716) #26	RFC1 (ENSOCUG00000004739) #27	KLB (ENSOCUG00000009086) #28	ENSOCUG00000009091 ##29	LIAS (ENSOCUG00000009096) #30	UGDH (ENSOCUG00000005531) #31	ENSOCUG00000033560	ENSOCUG00000022085	UBE2K (ENSOCUG00000005872) #33
Pika	MODERN SPECIES	185																KLF3 (ENSOPRG00000002909) #22	FAM114A1 (ENSOPRG00000002961) #24	TMEM156 (ENSOPRG00000002989)	KLHL5 (ENSOPRG00000003011) #25
Tree shrew	MODERN SPECIES	318																KLF3 (ENSTBEG00000015639) #22