Sciuridae	ANCESTRAL SPECIES	19	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221 #13	ENSGT00940000160197 #15	ENSGT00940000153404.b #16	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662 #23	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00990000210295	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #29	ENSGT00730000111066 #30	ENSGT00940000157489 #31	ENSGT00390000015224.c.b.a.k.a.a.b ##32	ENSGT00390000006234 #33	ENSGT00390000015355 #34	ENSGT00390000018294 #35	ENSGT00670000098059 #36
Marmotini	ANCESTRAL SPECIES	26	ENSGT00940000159983	ENSGT00390000002398	ENSGT00390000005197.a.b	ENSGT01100000263563.c.b	ENSGT00390000015965	ENSGT00390000000214.a.b	ENSGT00940000157221 #13	ENSGT00940000160197 #15	ENSGT00940000153404.b #16	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00900000143434	ENSGT00940000157456 #22	ENSGT00940000163662 #23	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #29	ENSGT00730000111066 #30	ENSGT00940000157489 #31	ENSGT00390000015224.c.b.a.k.a.a.b ##32	ENSGT00390000015224.c.b.a.l #32	ENSGT00390000006234 #33	ENSGT00390000015355 #34	ENSGT00390000018294.k.a #35	ENSGT00670000098059 #36
Marmotini_b	ANCESTRAL SPECIES	48						ENSGT01030000234945 #12	ENSGT00940000157221 #13	ENSGT00950000182841.b.a.a.b.b.p.a #14	ENSGT00940000160197 #15	ENSGT00940000153404.b #16	ENSGT00940000153648.b #17	ENSGT00390000013778 #18	ENSGT00940000159709 #19	ENSGT00940000156247 #20	ENSGT00940000157949 #21	ENSGT00940000157456 #22	ENSGT00940000163662 #23	ENSGT00940000162884 #24	ENSGT00940000162201 #25	ENSGT00390000010054.b #26	ENSGT00390000017929 #27	ENSGT00940000155358 #28	ENSGT00590000083165 #29	ENSGT00730000111066 #30	ENSGT00940000157489 #31	ENSGT00390000015224.c.b.a.k.a.a.b ##32	ENSGT00390000006234 #33	ENSGT00390000015355 #34	ENSGT00390000018294.k.a #35	ENSGT00670000098059 #36	ENSGT00940000155155 #37
Arctic ground squirrel	MODERN SPECIES	2						ENSUPAG00010016796 #12	PCDH7 (ENSUPAG00010016798) #13	ENSUPAG00010016821 #14	ARAP2 (ENSUPAG00010016832) #15	DTHD1 (ENSUPAG00010016950) #16	NWD2 (ENSUPAG00010016964) #17	C4orf19 (ENSUPAG00010016983) #18	RELL1 (ENSUPAG00010016993) #19	PGM2 (ENSUPAG00010017012) #20	TBC1D1 (ENSUPAG00010017027) #21	KLF3 (ENSUPAG00010017209) #22	TLR10 (ENSUPAG00010017218) #23	TLR1 (ENSUPAG00010017233) #24	TLR6 (ENSUPAG00010017235) #25	FAM114A1 (ENSUPAG00010017240) #26	TMEM156 (ENSUPAG00010017254) #27	KLHL5 (ENSUPAG00010017266) #28	WDR19 (ENSUPAG00010017295) #29	RFC1 (ENSUPAG00010017359) #30	KLB (ENSUPAG00010018497) #31	ENSUPAG00010018508 #32	LIAS (ENSUPAG00010018541) #33	UGDH (ENSUPAG00010018571) #34	ENSUPAG00010018587 #35	UBE2K (ENSUPAG00010018605) #36	PDS5A (ENSUPAG00010018683) #37
Squirrel	MODERN SPECIES	82						PCDH7 (ENSSTOG00000009192) #13	ENSSTOG00000029131 #14	ENSSTOG00000028351	ARAP2 (ENSSTOG00000019405) #15	DTHD1 (ENSSTOG00000003003) #16	NWD2 (ENSSTOG00000019543) #17	C4orf19 (ENSSTOG00000003425) #18	RELL1 (ENSSTOG00000001374) #19	PGM2 (ENSSTOG00000008176) #20	ENSSTOG00000020687 #21	KLF3 (ENSSTOG00000010881) #22	TLR1 (ENSSTOG00000021581) #24	TLR6 (ENSSTOG00000025480) #25	FAM114A1 (ENSSTOG00000001171) #26	TMEM156 (ENSSTOG00000004246) #27	KLHL5 (ENSSTOG00000007013) #28	WDR19 (ENSSTOG00000007054) #29	RFC1 (ENSSTOG00000007088) #30	KLB (ENSSTOG00000002069) #31	ENSSTOG00000002077 ##32	LIAS (ENSSTOG00000002082) #33	UGDH (ENSSTOG00000002096) #34	SMIM14 (ENSSTOG00000034581) ##35	UBE2K (ENSSTOG00000012447) #36	PDS5A (ENSSTOG00000012451) #37	N4BP2 (ENSSTOG00000020354)
Alpin marmot	MODERN SPECIES	9	SMIM20 (ENSMMMG00000017386)	RBPJ (ENSMMMG00000017407)	CCKAR (ENSMMMG00000017438)	STIM2 (ENSMMMG00000017470)	ENSMMMG00000017503	ENSMMMG00000017519 #13	ARAP2 (ENSMMMG00000017527) #15	DTHD1 (ENSMMMG00000017544) #16	NWD2 (ENSMMMG00000017559) #17	ENSMMMG00000017574	C4orf19 (ENSMMMG00000017577) #18	RELL1 (ENSMMMG00000017587) #19	PGM2 (ENSMMMG00000017606) #20	TBC1D1 (ENSMMMG00000017620) #21	ENSMMMG00000017716	KLF3 (ENSMMMG00000017721) #22	TLR10 (ENSMMMG00000017725) #23	TLR1 (ENSMMMG00000017739) #24	TLR6 (ENSMMMG00000017761) #25	FAM114A1 (ENSMMMG00000017765) #26	TMEM156 (ENSMMMG00000017773) #27	KLHL5 (ENSMMMG00000017784) #28	WDR19 (ENSMMMG00000017829) #29	RFC1 (ENSMMMG00000017905) #30	KLB (ENSMMMG00000017911) #31	ENSMMMG00000017920	ENSMMMG00000017936 #32	LIAS (ENSMMMG00000017957) #33	UGDH (ENSMMMG00000017978) #34	ENSMMMG00000018002 #35	UBE2K (ENSMMMG00000018022) #36
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	18	ENSSVLG00005011695	ENSSVLG00005011631	ENSSVLG00005011572 #12	PCDH7 (ENSSVLG00005011515) #13	ENSSVLG00005011423 ##14	ARAP2 (ENSSVLG00005010880) #15	DTHD1 (ENSSVLG00005010509) #16	ENSSVLG00005010441 #17	ENSSVLG00005010374 #17	C4orf19 (ENSSVLG00005010352) #18	RELL1 (ENSSVLG00005010318) #19	ENSSVLG00005010293	PGM2 (ENSSVLG00005010275) #20	TBC1D1 (ENSSVLG00005010172) #21	ENSSVLG00005010135	ENSSVLG00005010086 #22	ENSSVLG00005010070	TLR10 (ENSSVLG00005010051) #23	TLR1 (ENSSVLG00005010028) #24	TLR6 (ENSSVLG00005009982) #25	ENSSVLG00005009942	TMEM156 (ENSSVLG00005009879) #27	KLHL5 (ENSSVLG00005009665) #28	WDR19 (ENSSVLG00005009349) #29	RFC1 (ENSSVLG00005009235) #30	KLB (ENSSVLG00005009120) #31	ENSSVLG00005009038 ##32	LIAS (ENSSVLG00005008848) #33	UGDH (ENSSVLG00005008677) #34	ENSSVLG00005008623	ENSSVLG00005008568 #35
Eurasian red squirrel	MODERN SPECIES	57																ENSSVLG00005020536 #22	ENSSVLG00005020551	ENSSVLG00005020569	ENSSVLG00005020585	ENSSVLG00005020631	ENSSVLG00005020710