Euteleostomi	ANCESTRAL SPECIES	101	ENSGT00730000111591	ENSGT00530000064743	ENSGT00550000074976	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000165441	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT01050000244956.a.b	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT01010000222360.E.d	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748	ENSGT00940000160243	ENSGT00390000003224.B	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT00940000159122	ENSGT00390000004323.a #23	ENSGT01020000230616
Sarcopterygii	ANCESTRAL SPECIES	116	ENSGT00530000064743	ENSGT00550000074976	ENSGT00390000011772	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000165441	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT01050000244956.a.b	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748	ENSGT00940000160243	ENSGT00390000003224.B	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT00940000159122	ENSGT00390000004323.a #23	ENSGT01020000230616
Tetrapoda	ANCESTRAL SPECIES	5	ENSGT00730000111591	ENSGT00530000064743	ENSGT00550000074976	ENSGT00390000011772	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000165441	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748	ENSGT00940000160243	ENSGT00390000003224.B	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT00940000159122	ENSGT00940000159484	ENSGT00940000157206	ENSGT01030000235325	ENSGT00950000182981.b.f.a	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835
Amniota	ANCESTRAL SPECIES	45	ENSGT00390000011772	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00950000183157.b	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01060000248595.b.a.a #27	ENSGT00940000156265	ENSGT00940000165068	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00940000156551 #33	ENSGT00940000160284	ENSGT01010000222360.E.c
Mammalia	ANCESTRAL SPECIES	53	ENSGT00940000165434	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00940000156551 #33	ENSGT00940000160284	ENSGT00940000164333	ENSGT00730000111007.a.a
Theria	ANCESTRAL SPECIES	2	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00940000156551 #33	ENSGT00940000160284
Eutheria	ANCESTRAL SPECIES	1	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00940000153561.a ##31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000162777	ENSGT00940000156551 #33
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32
Glires	ANCESTRAL SPECIES	4	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Sciuridae	ANCESTRAL SPECIES	14	ENSGT00940000160150.b #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Marmotini	ANCESTRAL SPECIES	4	ENSGT00940000160150.b #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Marmotini_b	ANCESTRAL SPECIES	60	ENSGT00940000160150.b #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Squirrel	MODERN SPECIES	229	MOV10L1 (ENSSTOG00000003747) #7	PANX2 (ENSSTOG00000022957) #8	TRABD (ENSSTOG00000015169) #9	SELENOO (ENSSTOG00000021258) #10	TUBGCP6 (ENSSTOG00000025992) #11	HDAC10 (ENSSTOG00000015253) #12	MAPK12 (ENSSTOG00000015261) #13	MAPK11 (ENSSTOG00000015274) #14	PLXNB2 (ENSSTOG00000024431) #15	DENND6B (ENSSTOG00000015282) #16	PPP6R2 (ENSSTOG00000014815) #17	SBF1 (ENSSTOG00000014827) #18	ADM2 (ENSSTOG00000029571) #19	MIOX (ENSSTOG00000020836) #20	LMF2 (ENSSTOG00000028688) #21	NCAPH2 (ENSSTOG00000022417) #22	SCO2 (ENSSTOG00000026780) #23	TYMP (ENSSTOG00000000281) #24	ODF3B (ENSSTOG00000028471) #25	SYCE3 (ENSSTOG00000024024) #26	CPT1B (ENSSTOG00000014192) #27	CHKB (ENSSTOG00000028511) #28	MAPK8IP2 (ENSSTOG00000025549) #29	ARSA (ENSSTOG00000024727) #30	SHANK3 (ENSSTOG00000029090) #31	ENSSTOG00000022660 #32	ENSSTOG00000002723 #33
Arctic ground squirrel	MODERN SPECIES	581	TTLL8 (ENSUPAG00010005382)	MLC1 (ENSUPAG00010005397)	MOV10L1 (ENSUPAG00010005423) #7	PANX2 (ENSUPAG00010005495) #8	TRABD (ENSUPAG00010005513) #9	SELENOO (ENSUPAG00010005528) #10	TUBGCP6 (ENSUPAG00010005693) #11	MAPK12 (ENSUPAG00010005892) #13	MAPK11 (ENSUPAG00010005908) #14	PLXNB2 (ENSUPAG00010005922) #15	DENND6B (ENSUPAG00010005962) #16	PPP6R2 (ENSUPAG00010006007) #17	ADM2 (ENSUPAG00010006199) #19	MIOX (ENSUPAG00010006204) #20	LMF2 (ENSUPAG00010006213) #21	NCAPH2 (ENSUPAG00010006221) #22	SCO2 (ENSUPAG00010006259) #23	TYMP (ENSUPAG00010006263) #24	ODF3B (ENSUPAG00010006319) #25	ENSUPAG00010006327	SYCE3 (ENSUPAG00010006330) #26	CPT1B (ENSUPAG00010006338) #27	CHKB (ENSUPAG00010006349) #28	MAPK8IP2 (ENSUPAG00010006363) #29
Alpin marmot	MODERN SPECIES	135	CRELD2 (ENSMMMG00000007552)	TTLL8 (ENSMMMG00000007470)	MLC1 (ENSMMMG00000007449)	MOV10L1 (ENSMMMG00000007395) #7	ENSMMMG00000007392 #8	TRABD (ENSMMMG00000007360) #9	SELENOO (ENSMMMG00000007224) #10	HDAC10 (ENSMMMG00000006995) #12	ENSMMMG00000006990 #13	ENSMMMG00000006982 #13	ENSMMMG00000006969 #14	PLXNB2 (ENSMMMG00000006871) #15	ENSMMMG00000006865 #16	PPP6R2 (ENSMMMG00000006816) #17	MIOX (ENSMMMG00000005543) #20	NCAPH2 (ENSMMMG00000005406) #22	TYMP (ENSMMMG00000005203) #24	ENSMMMG00000005199	SYCE3 (ENSMMMG00000005185) #26	CPT1B (ENSMMMG00000005156) #27	CHKB (ENSMMMG00000005141) #28	ENSMMMG00000005134 #29	ARSA (ENSMMMG00000005119) #30	ENSMMMG00000005099 ##31	ENSMMMG00000005087 #32	ENSMMMG00000005054 #33
Eurasian red squirrel	MODERN SPECIES	14	PANX2 (ENSSVLG00005008282) #8	TRABD (ENSSVLG00005008334) #9	SELENOO (ENSSVLG00005008372) #10	TUBGCP6 (ENSSVLG00005008386) #11	HDAC10 (ENSSVLG00005008461) #12	MAPK12 (ENSSVLG00005009443) #13	MAPK11 (ENSSVLG00005009538) #14	ENSSVLG00005009917	ENSSVLG00005009955 #15	ENSSVLG00005010067 #16	ENSSVLG00005010106 #16	PPP6R2 (ENSSVLG00005010231) #17	ADM2 (ENSSVLG00005011019) #19	ENSSVLG00005011054	MIOX (ENSSVLG00005011076) #20	NCAPH2 (ENSSVLG00005011493) #22	SCO2 (ENSSVLG00005011562) #23	TYMP (ENSSVLG00005003437) #24	ODF3B (ENSSVLG00005003492) #25	SYCE3 (ENSSVLG00005003600) #26	CPT1B (ENSSVLG00005003625) #27	CHKB (ENSSVLG00005003656) #28	MAPK8IP2 (ENSSVLG00005003679) #29	ARSA (ENSSVLG00005003692) #30	ENSSVLG00005003705 #31	ENSSVLG00005003723 #31	ENSSVLG00005003731 #32	ENSSVLG00005003771 #33
Hystricomorpha	ANCESTRAL SPECIES	13	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Hystricomorpha_a	ANCESTRAL SPECIES	6	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Hystricomorpha_b	ANCESTRAL SPECIES	2	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Long-tailed chinchilla	DUPLICATION
Long-tailed chinchilla	MODERN SPECIES	132	TNPO1 (ENSCLAG00000016191)	FCHO2 (ENSCLAG00000009654)	TMEM171 (ENSCLAG00000009754)	TMEM174 (ENSCLAG00000009686)	BTF3 (ENSCLAG00000014499)	ANKRA2 (ENSCLAG00000013134)	UTP15 (ENSCLAG00000016531)	ARHGEF28 (ENSCLAG00000011926)	ENC1 (ENSCLAG00000010345)	HEXB (ENSCLAG00000016006)	GFM2 (ENSCLAG00000013440)	NSA2 (ENSCLAG00000010179)	FAM169A (ENSCLAG00000009619)	ENSCLAG00000011385	GCNT4 (ENSCLAG00000010436)	ENSCLAG00000009641 #22	ANKRD31 (ENSCLAG00000011065)	HMGCR (ENSCLAG00000010132)	CERT1 (ENSCLAG00000011527)	POLK (ENSCLAG00000011236)	ANKDD1B (ENSCLAG00000010494)	POC5 (ENSCLAG00000009830)	SV2C (ENSCLAG00000013949)	F2RL2 (ENSCLAG00000012739)	IQGAP2 (ENSCLAG00000011435)	F2RL1 (ENSCLAG00000010304)	S100Z (ENSCLAG00000010354)	CRHBP (ENSCLAG00000009942)	AGGF1 (ENSCLAG00000012928)	PDE8B (ENSCLAG00000011619)	WDR41 (ENSCLAG00000010095)
Long-tailed chinchilla	MODERN SPECIES	120	MOV10L1 (ENSCLAG00000017288) #7	PANX2 (ENSCLAG00000017242) #8	TRABD (ENSCLAG00000017256) #9	SELENOO (ENSCLAG00000016415) #10	TUBGCP6 (ENSCLAG00000016687) #11	HDAC10 (ENSCLAG00000017266) #12	MAPK12 (ENSCLAG00000017046) #13	MAPK11 (ENSCLAG00000017044) #14	PLXNB2 (ENSCLAG00000016979) #15	DENND6B (ENSCLAG00000017052) #16	PPP6R2 (ENSCLAG00000017017) #17	SBF1 (ENSCLAG00000015857) #18	ADM2 (ENSCLAG00000017049) #19	MIOX (ENSCLAG00000017078) #20	LMF2 (ENSCLAG00000016656) #21	ENSCLAG00000017104 #22	SCO2 (ENSCLAG00000017200) #23	TYMP (ENSCLAG00000017041) #24	ODF3B (ENSCLAG00000017114) #25	SYCE3 (ENSCLAG00000017255) #26	CPT1B (ENSCLAG00000017252) #27	CHKB (ENSCLAG00000016876) #28	MAPK8IP2 (ENSCLAG00000017165) #29	ARSA (ENSCLAG00000017290) #30	SHANK3 (ENSCLAG00000017204) #31	ENSCLAG00000017149 #32	ENSCLAG00000017218 #33
Degu	MODERN SPECIES	194	PANX2 (ENSODEG00000015716) #8	TRABD (ENSODEG00000015551) #9	SELENOO (ENSODEG00000016393) #10	TUBGCP6 (ENSODEG00000015845) #11	ENSODEG00000015348 #12	MAPK12 (ENSODEG00000015663) #13	MAPK11 (ENSODEG00000015754) #14	ENSODEG00000016049 #15	ENSODEG00000015385 #15	DENND6B (ENSODEG00000016328) #16	PPP6R2 (ENSODEG00000015857) #17	SBF1 (ENSODEG00000015397) #18	ADM2 (ENSODEG00000015552) #19	MIOX (ENSODEG00000016023) #20	LMF2 (ENSODEG00000015351) #21	NCAPH2 (ENSODEG00000015562) #22	SCO2 (ENSODEG00000015748) #23	TYMP (ENSODEG00000016624) #24	ODF3B (ENSODEG00000015644) #25	ENSODEG00000015964	SYCE3 (ENSODEG00000015584) #26	ENSODEG00000016001 #27	ENSODEG00000016151 #27	CHKB (ENSODEG00000016746) #28	MAPK8IP2 (ENSODEG00000015596) #29	ARSA (ENSODEG00000015742) #30	SHANK3 (ENSODEG00000015758) #31	ENSODEG00000016242 #32	ENSODEG00000015650 #33	ENSODEG00000020388
Guinea pig	MODERN SPECIES	183	MOV10L1 (ENSCPOG00000002014) #7	PANX2 (ENSCPOG00000005860) #8	TRABD (ENSCPOG00000040468) #9	SELENOO (ENSCPOG00000014849) #10	TUBGCP6 (ENSCPOG00000014850) #11	ENSCPOG00000014856 #12	MAPK12 (ENSCPOG00000014859) #13	MAPK11 (ENSCPOG00000030297) #14	PLXNB2 (ENSCPOG00000014870) #15	DENND6B (ENSCPOG00000014874) #16	ENSCPOG00000034640	PPP6R2 (ENSCPOG00000013753) #17	SBF1 (ENSCPOG00000014104) #18	MIOX (ENSCPOG00000014279) #20	LMF2 (ENSCPOG00000005839) #21	NCAPH2 (ENSCPOG00000021481) #22	SCO2 (ENSCPOG00000026338) #23	TYMP (ENSCPOG00000021420) #24	ODF3B (ENSCPOG00000024753) #25	ENSCPOG00000029990	SYCE3 (ENSCPOG00000035980) #26	CPT1B (ENSCPOG00000007614) #27	CHKB (ENSCPOG00000007631) #28	MAPK8IP2 (ENSCPOG00000040518) #29	ARSA (ENSCPOG00000007416) #30	SHANK3 (ENSCPOG00000006983) #31	ACR (ENSCPOG00000008995) #32	ENSCPOG00000026899 #33
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Muroidea	ANCESTRAL SPECIES	5	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906	ENSGT00940000159679
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906	ENSGT00940000159679
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906	ENSGT00940000159679
Chinese hamster chok1gshd	DUPLICATION
Chinese hamster chok1gshd	MODERN SPECIES	1	Mov10l1 (ENSCGRG00001007137) #7	Panx2 (ENSCGRG00001022483) #8	Trabd (ENSCGRG00001022719) #9	Selenoo (ENSCGRG00001022961) #10	Tubgcp6 (ENSCGRG00001022046) #11	Hdac10 (ENSCGRG00001022290) #12	Mapk12 (ENSCGRG00001004856) #13	Mapk11 (ENSCGRG00001010404) #14	ENSCGRG00001021059 #15	Dennd6b (ENSCGRG00001021451) #16	Ppp6r2 (ENSCGRG00001023623) #17	Sbf1 (ENSCGRG00001001203) #18	Adm2 (ENSCGRG00001023607) #19	Miox (ENSCGRG00001003260) #20	Lmf2 (ENSCGRG00001020956) #21	ENSCGRG00001021303 #22	Sco2 (ENSCGRG00001009354) #23	Tymp (ENSCGRG00001002698) #24	Odf3b (ENSCGRG00001003216) #25	ENSCGRG00001010512	Syce3 (ENSCGRG00001023759) #26	Cpt1b (ENSCGRG00001001930) #27	Chkb (ENSCGRG00001003456) #28	Mapk8ip2 (ENSCGRG00001023653) #29	Arsa (ENSCGRG00001021147) #30	Shank3 (ENSCGRG00001021597) #31	Acr (ENSCGRG00001010552) #32	Rabl2 (ENSCGRG00001021894) #33	Syt10 (ENSCGRG00001022503)	Alg10b (ENSCGRG00001023011)	Cpne8 (ENSCGRG00001023120)
Chinese hamster chok1gshd	MODERN SPECIES	2	Zbtb25 (ENSCGRG00001021536)	Zbtb1 (ENSCGRG00001019973)	Hspa2 (ENSCGRG00001011464)	Ppp1r36 (ENSCGRG00001016430)	Plekhg3 (ENSCGRG00001018822)	Sptb (ENSCGRG00001019015)	Gpx2 (ENSCGRG00001008829)	Rab15 (ENSCGRG00001006853)	Fntb (ENSCGRG00001009078)	Max (ENSCGRG00001015324)	Fut8 (ENSCGRG00001018667)	ENSCGRG00001016851	ENSCGRG00001016418	Gphn (ENSCGRG00001016321)	Garin2 (ENSCGRG00001004808)	ENSCGRG00001007015 #22	Pals1 (ENSCGRG00001018649)	ENSCGRG00001016651	Eif2s1 (ENSCGRG00001015826)	Plek2 (ENSCGRG00001015296)	Tmem229b (ENSCGRG00001011506)	Plekhh1 (ENSCGRG00001010948)	Pigh (ENSCGRG00001016093)	Arg2 (ENSCGRG00001022374)	Vti1b (ENSCGRG00001021512)	Rdh11 (ENSCGRG00001020500)	Rdh12 (ENSCGRG00001018943)	Zfyve26 (ENSCGRG00001007545)	Rad51b (ENSCGRG00001014395)	Zfp36l1 (ENSCGRG00001010926)	Actn1 (ENSCGRG00001015821)
Golden Hamster	MODERN SPECIES	626	Mov10l1 (ENSMAUG00000003667) #7	Panx2 (ENSMAUG00000022221) #8	Trabd (ENSMAUG00000009029) #9	Selenoo (ENSMAUG00000004131) #10	Tubgcp6 (ENSMAUG00000004607) #11	Hdac10 (ENSMAUG00000002367) #12	Mapk12 (ENSMAUG00000022070) #13	Mapk11 (ENSMAUG00000022264) #14	ENSMAUG00000012310 #15	Dennd6b (ENSMAUG00000005942) #16	Ppp6r2 (ENSMAUG00000008887) #17	Sbf1 (ENSMAUG00000004005) #18	Adm2 (ENSMAUG00000012594) #19	Miox (ENSMAUG00000013732) #20	Lmf2 (ENSMAUG00000001488) #21	Ncaph2 (ENSMAUG00000013053) #22	Sco2 (ENSMAUG00000010587) #23	Tymp (ENSMAUG00000004074) #24	Odf3b (ENSMAUG00000008739) #25	Syce3 (ENSMAUG00000005251) #26	ENSMAUG00000007948 #27	ENSMAUG00000011968 #27	Chkb (ENSMAUG00000008994) #28	Mapk8ip2 (ENSMAUG00000010821) #29	Arsa (ENSMAUG00000004167) #30	Shank3 (ENSMAUG00000018491) #31	Acr (ENSMAUG00000006612) #32	Rabl2 (ENSMAUG00000010955) #33	Syt10 (ENSMAUG00000009924)	Alg10b (ENSMAUG00000010415)	Cpne8 (ENSMAUG00000016239)
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906	ENSGT00940000159679
Northern American deer mouse	MODERN SPECIES	12	Ttll8 (ENSPEMG00000012821)	Mlc1 (ENSPEMG00000002209)	Mov10l1 (ENSPEMG00000022147) #7	Panx2 (ENSPEMG00000022510) #8	Trabd (ENSPEMG00000021540) #9	Selenoo (ENSPEMG00000013321) #10	Hdac10 (ENSPEMG00000021370) #12	Mapk12 (ENSPEMG00000022721) #13	Mapk11 (ENSPEMG00000022207) #14	Plxnb2 (ENSPEMG00000022994) #15	Dennd6b (ENSPEMG00000015105) #16	Ppp6r2 (ENSPEMG00000031380) #17	ENSPEMG00000024990 #18	Adm2 (ENSPEMG00000013586) #19	Miox (ENSPEMG00000004492) #20	Ncaph2 (ENSPEMG00000022288) #22	Sco2 (ENSPEMG00000026350) #23	Tymp (ENSPEMG00000021367) #24	Odf3b (ENSPEMG00000013237) #25	Klhdc7b (ENSPEMG00000025743)	Syce3 (ENSPEMG00000022067) #26	Cpt1b (ENSPEMG00000021514) #27	Chkb (ENSPEMG00000022436) #28	Mapk8ip2 (ENSPEMG00000023117) #29	Arsa (ENSPEMG00000022901) #30	Shank3 (ENSPEMG00000023862) #31	Acr (ENSPEMG00000021431) #32	Rabl2 (ENSPEMG00000024045) #33	ENSPEMG00000025615	Syt10 (ENSPEMG00000017020)	Alg10b (ENSPEMG00000025886)
Prairie vole	MODERN SPECIES	2	Mov10l1 (ENSMOCG00000020419) #7	Panx2 (ENSMOCG00000008412) #8	Trabd (ENSMOCG00000013339) #9	Selenoo (ENSMOCG00000010528) #10	Tubgcp6 (ENSMOCG00000013285) #11	Hdac10 (ENSMOCG00000020024) #12	Mapk12 (ENSMOCG00000003785) #13	Mapk11 (ENSMOCG00000015781) #14	ENSMOCG00000015550 #15	Dennd6b (ENSMOCG00000019229) #16	ENSMOCG00000021080 #17	Sbf1 (ENSMOCG00000012143) #18	Adm2 (ENSMOCG00000010281) #19	Miox (ENSMOCG00000016130) #20	Lmf2 (ENSMOCG00000001200) #21	Ncaph2 (ENSMOCG00000001202) #22	Tymp (ENSMOCG00000014827) #24	Odf3b (ENSMOCG00000017597) #25	Syce3 (ENSMOCG00000012683) #26	ENSMOCG00000001265 #27	ENSMOCG00000011037 #27	Chkb (ENSMOCG00000000306) #28	Mapk8ip2 (ENSMOCG00000017599) #29	Arsa (ENSMOCG00000015278) #30	ENSMOCG00000001794	Shank3 (ENSMOCG00000009362) #31	Acr (ENSMOCG00000004907) #32	Rabl2 (ENSMOCG00000002775) #33	Syt10 (ENSMOCG00000010483)	Alg10b (ENSMOCG00000022833)	Cpne8 (ENSMOCG00000019821)
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00860000136149	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906
Mus	ANCESTRAL SPECIES	11	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00860000136149	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906
Shrew mouse	MODERN SPECIES	8	Mov10l1 (MGP_PahariEiJ_G0020153) #7	Panx2 (MGP_PahariEiJ_G0020154) #8	Trabd (MGP_PahariEiJ_G0020155) #9	Selenoo (MGP_PahariEiJ_G0020156) #10	Tubgcp6 (MGP_PahariEiJ_G0020157) #11	Hdac10 (MGP_PahariEiJ_G0020158) #12	Mapk12 (MGP_PahariEiJ_G0020159) #13	Mapk11 (MGP_PahariEiJ_G0020160) #14	Plxnb2 (MGP_PahariEiJ_G0020161) #15	Dennd6b (MGP_PahariEiJ_G0020162) #16	Ppp6r2 (MGP_PahariEiJ_G0020163) #17	Sbf1 (MGP_PahariEiJ_G0020164) #18	Adm2 (MGP_PahariEiJ_G0020165) #19	Miox (MGP_PahariEiJ_G0020166) #20	Lmf2 (MGP_PahariEiJ_G0020167) #21	Ncaph2 (MGP_PahariEiJ_G0020168) #22	Sco2 (MGP_PahariEiJ_G0020169) #23	Tymp (MGP_PahariEiJ_G0020170) #24	Odf3b (MGP_PahariEiJ_G0020171) #25	MGP_PahariEiJ_G0020172	Syce3 (MGP_PahariEiJ_G0020173) #26	Cpt1b (MGP_PahariEiJ_G0020175) #27	Chkb (MGP_PahariEiJ_G0020174) #28	MGP_PahariEiJ_G0020176	Mapk8ip2 (MGP_PahariEiJ_G0020177) #29	Arsa (MGP_PahariEiJ_G0020178) #30	Shank3 (MGP_PahariEiJ_G0020179) #31	Acr (MGP_PahariEiJ_G0020180) #32	Rabl2 (MGP_PahariEiJ_G0020181) #33	Syt10 (MGP_PahariEiJ_G0020182)	Alg10b (MGP_PahariEiJ_G0020183)
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443.k #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00860000136149	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443.k #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00860000136149	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443.k #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00860000136149	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000158899	ENSGT00390000012906
Steppe mouse	MODERN SPECIES	3375	Mlc1 (ENSMSIG00000021277)	Mov10l1 (ENSMSIG00000021302) #7	Panx2 (ENSMSIG00000021430) #8	Selenoo (ENSMSIG00000021500) #10	Tubgcp6 (ENSMSIG00000021518) #11	Hdac10 (ENSMSIG00000021649) #12	Mapk12 (ENSMSIG00000021754) #13	Mapk11 (ENSMSIG00000021771) #14	Plxnb2 (ENSMSIG00000021786) #15	Dennd6b (ENSMSIG00000021830) #16	Ppp6r2 (ENSMSIG00000022106) #17	Sbf1 (ENSMSIG00000022239) #18	Adm2 (ENSMSIG00000022357) #19	Miox (ENSMSIG00000022365) #20	Lmf2 (ENSMSIG00000022386) #21	Ncaph2 (ENSMSIG00000022410) #22	Sco2 (ENSMSIG00000022541) #23	Tymp (ENSMSIG00000022545) #24	Odf3b (ENSMSIG00000022554) #25	ENSMSIG00000022560	Syce3 (ENSMSIG00000022563) #26	Cpt1b (ENSMSIG00000022570) #27	Chkb (ENSMSIG00000022596) #28	ENSMSIG00000022637	Mapk8ip2 (ENSMSIG00000022642) #29	Arsa (ENSMSIG00000022691) #30	Shank3 (ENSMSIG00000022725) #31	Acr (ENSMSIG00000022877) #32	Rabl2 (ENSMSIG00000022891) #33	ENSMSIG00000022915	Syt10 (ENSMSIG00000022932)
spretus	MODERN SPECIES	6	Mov10l1 (MGP_SPRETEiJ_G0021045) #7	Panx2 (MGP_SPRETEiJ_G0021046) #8	Trabd (MGP_SPRETEiJ_G0021047) #9	MGP_SPRETEiJ_G0021048 #10	Tubgcp6 (MGP_SPRETEiJ_G0021049) #11	Hdac10 (MGP_SPRETEiJ_G0021050) #12	Mapk12 (MGP_SPRETEiJ_G0021051) #13	Mapk11 (MGP_SPRETEiJ_G0021052) #14	Plxnb2 (MGP_SPRETEiJ_G0021053) #15	Dennd6b (MGP_SPRETEiJ_G0021054) #16	Ppp6r2 (MGP_SPRETEiJ_G0021055) #17	Sbf1 (MGP_SPRETEiJ_G0021056) #18	Adm2 (MGP_SPRETEiJ_G0021057) #19	Miox (MGP_SPRETEiJ_G0021058) #20	Lmf2 (MGP_SPRETEiJ_G0021059) #21	Ncaph2 (MGP_SPRETEiJ_G0021060) #22	Sco2 (MGP_SPRETEiJ_G0021061) #23	Tymp (MGP_SPRETEiJ_G0021062) #24	Odf3b (MGP_SPRETEiJ_G0021063) #25	MGP_SPRETEiJ_G0021064	Syce3 (MGP_SPRETEiJ_G0021065) #26	Cpt1b (MGP_SPRETEiJ_G0021067) #27	Chkb (MGP_SPRETEiJ_G0021066) #28	MGP_SPRETEiJ_G0021068	Mapk8ip2 (MGP_SPRETEiJ_G0021069) #29	MGP_SPRETEiJ_G0021070 #30	Shank3 (MGP_SPRETEiJ_G0021071) #31	Acr (MGP_SPRETEiJ_G0021072) #32	Rabl2 (MGP_SPRETEiJ_G0021073) #33	Syt10 (MGP_SPRETEiJ_G0021074)	Alg10b (MGP_SPRETEiJ_G0021075)
Mouse	MODERN SPECIES	6	Mov10l1 (ENSMUSG00000015365) #7	Panx2 (ENSMUSG00000058441) #8	Trabd (ENSMUSG00000015363) #9	Selenoo (ENSMUSG00000035757) #10	Tubgcp6 (ENSMUSG00000051786) #11	Hdac10 (ENSMUSG00000062906) #12	Mapk12 (ENSMUSG00000022610) #13	Mapk11 (ENSMUSG00000053137) #14	Plxnb2 (ENSMUSG00000036606) #15	Dennd6b (ENSMUSG00000015377) #16	Ppp6r2 (ENSMUSG00000036561) #17	Sbf1 (ENSMUSG00000036529) #18	Adm2 (ENSMUSG00000054136) #19	Miox (ENSMUSG00000022613) #20	Lmf2 (ENSMUSG00000022614) #21	Ncaph2 (ENSMUSG00000008690) #22	Sco2 (ENSMUSG00000091780) #23	Tymp (ENSMUSG00000022615) #24	Odf3b (ENSMUSG00000047394) #25	Klhdc7b (ENSMUSG00000091680)	Syce3 (ENSMUSG00000078938) #26	Cpt1b (ENSMUSG00000078937) #27	Chkb (ENSMUSG00000022617) #28	Mapk8ip2 (ENSMUSG00000022619) #29	Arsa (ENSMUSG00000022620) #30	Shank3 (ENSMUSG00000022623) #31	Acr (ENSMUSG00000022622) #32	Rabl2 (ENSMUSG00000022621) #33	Syt10 (ENSMUSG00000063260)	Alg10b (ENSMUSG00000075470)	Cpne8 (ENSMUSG00000052560)
Ryukyu mouse	MODERN SPECIES	6	Mov10l1 (MGP_CAROLIEiJ_G0020148) #7	Panx2 (MGP_CAROLIEiJ_G0020149) #8	Trabd (MGP_CAROLIEiJ_G0020150) #9	MGP_CAROLIEiJ_G0020151 #10	Tubgcp6 (MGP_CAROLIEiJ_G0020152) #11	Hdac10 (MGP_CAROLIEiJ_G0020153) #12	Mapk12 (MGP_CAROLIEiJ_G0020154) #13	Mapk11 (MGP_CAROLIEiJ_G0020155) #14	Plxnb2 (MGP_CAROLIEiJ_G0020156) #15	Dennd6b (MGP_CAROLIEiJ_G0020157) #16	Ppp6r2 (MGP_CAROLIEiJ_G0020158) #17	Sbf1 (MGP_CAROLIEiJ_G0020159) #18	Adm2 (MGP_CAROLIEiJ_G0020160) #19	Miox (MGP_CAROLIEiJ_G0020161) #20	Lmf2 (MGP_CAROLIEiJ_G0020162) #21	Ncaph2 (MGP_CAROLIEiJ_G0020163) #22	Sco2 (MGP_CAROLIEiJ_G0020164) #23	Tymp (MGP_CAROLIEiJ_G0020165) #24	Odf3b (MGP_CAROLIEiJ_G0020166) #25	MGP_CAROLIEiJ_G0020167	Syce3 (MGP_CAROLIEiJ_G0020168) #26	Cpt1b (MGP_CAROLIEiJ_G0020170) #27	Chkb (MGP_CAROLIEiJ_G0020169) #28	MGP_CAROLIEiJ_G0020171	Mapk8ip2 (MGP_CAROLIEiJ_G0020172) #29	MGP_CAROLIEiJ_G0020173 #30	Shank3 (MGP_CAROLIEiJ_G0020174) #31	Acr (MGP_CAROLIEiJ_G0020175) #32	Rabl2 (MGP_CAROLIEiJ_G0020176) #33	Syt10 (MGP_CAROLIEiJ_G0020177)	Alg10b (MGP_CAROLIEiJ_G0020178)
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000014443.l #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000014443.l #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000014443.l #22
Steppe mouse	MODERN SPECIES	3211						Ezr (ENSMSIG00000014644)	Sytl3 (ENSMSIG00000014687)	ENSMSIG00000014712	Tmem181a (ENSMSIG00000014774)	Tulp4 (ENSMSIG00000014861)	Gtf2h5 (ENSMSIG00000014886)	Serac1 (ENSMSIG00000014904)	Synj2 (ENSMSIG00000015028)	Snx9 (ENSMSIG00000015240)	Zdhhc14 (ENSMSIG00000015288)	ENSMSIG00000015308 #22	Tmem242 (ENSMSIG00000015329)	Arid1b (ENSMSIG00000015417)	ENSMSIG00000015661	ENSMSIG00000015702
Rat	MODERN SPECIES	17	Mlc1 (ENSRNOG00000032871)	Mov10l1 (ENSRNOG00000031093) #7	Panx2 (ENSRNOG00000055530) #8	Trabd (ENSRNOG00000029095) #9	Selenoo (ENSRNOG00000060120) #10	Tubgcp6 (ENSRNOG00000006028) #11	Hdac10 (ENSRNOG00000031915) #12	Mapk12 (ENSRNOG00000031233) #13	Mapk11 (ENSRNOG00000006984) #14	Plxnb2 (ENSRNOG00000007133) #15	Dennd6b (ENSRNOG00000029866) #16	Ppp6r2 (ENSRNOG00000026425) #17	Sbf1 (ENSRNOG00000008392) #18	Adm2 (ENSRNOG00000029830) #19	Miox (ENSRNOG00000008694) #20	Ncaph2 (ENSRNOG00000009598) #22	Tymp (ENSRNOG00000066458) #23	Tymp (ENSRNOG00000032394) #24	Odf3b (ENSRNOG00000037060) #25	Klhdc7b (ENSRNOG00000032419)	Syce3 (ENSRNOG00000042056) #26	Cpt1b (ENSRNOG00000010438) #27	Chkb (ENSRNOG00000011404) #28	ENSRNOG00000063153	Mapk8ip2 (ENSRNOG00000032828) #29	Arsa (ENSRNOG00000012953) #30	Shank3 (ENSRNOG00000052296) #31	Acr (ENSRNOG00000029762) #32	Rabl2 (ENSRNOG00000013947) #33	Syt10 (ENSRNOG00000014296)	Alg10 (ENSRNOG00000014511)
Upper Galilee mountains blind mole rat	MODERN SPECIES	895	Trabd (ENSNGAG00000007919) #9	Selenoo (ENSNGAG00000011370) #10	Tubgcp6 (ENSNGAG00000001119) #11	Hdac10 (ENSNGAG00000021671) #12	Mapk12 (ENSNGAG00000017682) #13	Mapk11 (ENSNGAG00000001344) #14	ENSNGAG00000010358 #15	ENSNGAG00000011156 #15	Dennd6b (ENSNGAG00000017789) #16	Ppp6r2 (ENSNGAG00000018791) #17	Sbf1 (ENSNGAG00000005935) #18	Adm2 (ENSNGAG00000020892) #19	Miox (ENSNGAG00000019418) #20	ENSNGAG00000023096	Lmf2 (ENSNGAG00000013536) #21	Ncaph2 (ENSNGAG00000020931) #22	Sco2 (ENSNGAG00000016352) #23	Tymp (ENSNGAG00000019416) #24	Odf3b (ENSNGAG00000013244) #25	Syce3 (ENSNGAG00000002569) #26	Cpt1b (ENSNGAG00000021066) #27	Chkb (ENSNGAG00000013327) #28	Mapk8ip2 (ENSNGAG00000014860) #29	Arsa (ENSNGAG00000013935) #30	Shank3 (ENSNGAG00000016865) #31	ENSNGAG00000016824 #32	Rabl2 (ENSNGAG00000012843) #33
Lesser Egyptian jerboa	MODERN SPECIES	42	Panx2 (ENSJJAG00000022586) #8	Trabd (ENSJJAG00000002026) #9	Selenoo (ENSJJAG00000011247) #10	Tubgcp6 (ENSJJAG00000001268) #11	ENSJJAG00000010762 #12	Mapk12 (ENSJJAG00000023055) #13	Mapk11 (ENSJJAG00000022908) #14	ENSJJAG00000009551 #15	ENSJJAG00000000645 #15	Dennd6b (ENSJJAG00000002679) #16	Ppp6r2 (ENSJJAG00000012079) #17	Sbf1 (ENSJJAG00000004040) #18	Adm2 (ENSJJAG00000000484) #19	Miox (ENSJJAG00000008090) #20	Lmf2 (ENSJJAG00000015359) #21	Ncaph2 (ENSJJAG00000019803) #22	Sco2 (ENSJJAG00000005906) #23	Tymp (ENSJJAG00000013852) #24	Odf3b (ENSJJAG00000002954) #25	Syce3 (ENSJJAG00000010728) #26	ENSJJAG00000009853 #27	ENSJJAG00000002397 #27	Chkb (ENSJJAG00000013076) #28	Mapk8ip2 (ENSJJAG00000010188) #29	Arsa (ENSJJAG00000008805) #30	Shank3 (ENSJJAG00000016849) #31	ENSJJAG00000009091 #32	Rabl2 (ENSJJAG00000010792) #33
Kangaroo rat	MODERN SPECIES	406	Mov10l1 (ENSDORG00000013249) #7	Panx2 (ENSDORG00000006971) #8	Trabd (ENSDORG00000013086) #9	Selenoo (ENSDORG00000013088) #10	Tubgcp6 (ENSDORG00000013091) #11	ENSDORG00000026919 #12	Mapk12 (ENSDORG00000001843) #13	ENSDORG00000013308 #15	ENSDORG00000027708 #15	Dennd6b (ENSDORG00000013310) #16	Ppp6r2 (ENSDORG00000014499) #17	Sbf1 (ENSDORG00000014505) #18	Adm2 (ENSDORG00000028675) #19	Miox (ENSDORG00000014511) #20	Lmf2 (ENSDORG00000014512) #21	ENSDORG00000027265 #22	ENSDORG00000027258 #24	Syce3 (ENSDORG00000009365) #26	Cpt1b (ENSDORG00000003175) #27	Chkb (ENSDORG00000003176) #28	Mapk8ip2 (ENSDORG00000015461) #29	Arsa (ENSDORG00000015460) #30	Shank3 (ENSDORG00000025224) #31	ENSDORG00000000006 #32	Rabl2 (ENSDORG00000000003) #33	Pnpla3 (ENSDORG00000008107)	Pnpla5 (ENSDORG00000010083)	Sult4a1 (ENSDORG00000006724)	Efcab6 (ENSDORG00000008442)	Mpped1 (ENSDORG00000015196)	Scube1 (ENSDORG00000012643)
Lagomorpha	ANCESTRAL SPECIES	189											ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00940000155263 #18	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30
Pika	MODERN SPECIES	5231														ENSOPRG00000002776 #18	LMF2 (ENSOPRG00000002862) #21	NCAPH2 (ENSOPRG00000002906) #22	TYMP (ENSOPRG00000002977) #24	ODF3B (ENSOPRG00000018227) #25	ENSOPRG00000002991	CPT1B (ENSOPRG00000002999) #27	CHKB (ENSOPRG00000003038) #28	MAPK8IP2 (ENSOPRG00000003066) #29
Rabbit	MODERN SPECIES	861											ENSOCUG00000032997 #19	MIOX (ENSOCUG00000028220) #20	LMF2 (ENSOCUG00000001397) #21	ENSOCUG00000031969	SCO2 (ENSOCUG00000034684) #23	NCAPH2 (ENSOCUG00000001401) #22	TYMP (ENSOCUG00000001408) #24	ENSOCUG00000027602 #25	ENSOCUG00000039605 ##31	ENSOCUG00000015840 #32	ENSOCUG00000010420 #33
Tree shrew	MODERN SPECIES	601																ENSTBEG00000016380 #22	SCO2 (ENSTBEG00000016548) #23	ENSTBEG00000016606 #24
Primates	ANCESTRAL SPECIES	6	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000162777	ENSGT00940000156551 #33
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Simiiformes	ANCESTRAL SPECIES	27	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Catarrhini	ANCESTRAL SPECIES	22	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Cercopithecidae	ANCESTRAL SPECIES	24	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00910000146845.b.b
Cercopithecinae	ANCESTRAL SPECIES	21	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00910000146845.b.b
Cercopithecinae_a	ANCESTRAL SPECIES	20	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551.j.b #33	ENSGT00910000146845.b.b
Macaca	ANCESTRAL SPECIES	20	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551.j.a #33
Macaca_a	ANCESTRAL SPECIES	20	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551.j.a #33
Rhesus	MODERN SPECIES	1	MLC1 (ENSMMUG00000009119)	MOV10L1 (ENSMMUG00000009120) #7	PANX2 (ENSMMUG00000011023) #8	TRABD (ENSMMUG00000014087) #9	SELENOO (ENSMMUG00000014098) #10	TUBGCP6 (ENSMMUG00000014100) #11	HDAC10 (ENSMMUG00000014101) #12	MAPK12 (ENSMMUG00000014106) #13	MAPK11 (ENSMMUG00000014107) #14	PLXNB2 (ENSMMUG00000008331) #15	DENND6B (ENSMMUG00000008327) #16	PPP6R2 (ENSMMUG00000009075) #17	SBF1 (ENSMMUG00000009082) #18	ADM2 (ENSMMUG00000062822) #19	MIOX (ENSMMUG00000009088) #20	NCAPH2 (ENSMMUG00000001763) #22	ENSMMUG00000001764 #24	ODF3B (ENSMMUG00000039452) #25	SYCE3 (ENSMMUG00000058930) #26	CPT1B (ENSMMUG00000003121) #27	CHKB (ENSMMUG00000057498) #28	MAPK8IP2 (ENSMMUG00000064486) #29	ARSA (ENSMMUG00000016274) #30	ENSMMUG00000055403	SHANK3 (ENSMMUG00000005588) #31	ACR (ENSMMUG00000005592) #32	RABL2B (ENSMMUG00000022914) #33
Crab-eating macaque	MODERN SPECIES	1	ENSMFAG00000064283	MLC1 (ENSMFAG00000024753)	MOV10L1 (ENSMFAG00000035651) #7	ENSMFAG00000065187 #8	TRABD (ENSMFAG00000038729) #9	SELENOO (ENSMFAG00000000242) #10	HDAC10 (ENSMFAG00000033885) #12	MAPK12 (ENSMFAG00000034798) #13	MAPK11 (ENSMFAG00000002644) #14	PLXNB2 (ENSMFAG00000035984) #15	DENND6B (ENSMFAG00000033956) #16	PPP6R2 (ENSMFAG00000002797) #17	ADM2 (ENSMFAG00000055878) #19	MIOX (ENSMFAG00000033234) #20	LMF2 (ENSMFAG00000031482) #21	NCAPH2 (ENSMFAG00000033329) #22	ENSMFAG00000063947	SCO2 (ENSMFAG00000055882) #23	TYMP (ENSMFAG00000045728) #24	ENSMFAG00000002276	SYCE3 (ENSMFAG00000036358) #26	CPT1B (ENSMFAG00000023471) #27	CHKB (ENSMFAG00000043916) #28	ENSMFAG00000049162	ENSMFAG00000001692 #29	ARSA (ENSMFAG00000041434) #30	ACR (ENSMFAG00000034551) #32	ENSMFAG00000044775 #33	ENSMFAG00000064904
Pig-tailed macaque	MODERN SPECIES	159	PANX2 (ENSMNEG00000020460) #8	TRABD (ENSMNEG00000037847) #9	SELENOO (ENSMNEG00000035644) #10	TUBGCP6 (ENSMNEG00000031575) #11	HDAC10 (ENSMNEG00000033636) #12	MAPK12 (ENSMNEG00000042652) #13	MAPK11 (ENSMNEG00000030261) #14	PLXNB2 (ENSMNEG00000042020) #15	ENSMNEG00000043368	DENND6B (ENSMNEG00000042766) #16	PPP6R2 (ENSMNEG00000031696) #17	SBF1 (ENSMNEG00000043017) #18	ADM2 (ENSMNEG00000030356) #19	MIOX (ENSMNEG00000044698) #20	LMF2 (ENSMNEG00000042502) #21	NCAPH2 (ENSMNEG00000032019) #22	TYMP (ENSMNEG00000045043) #24	ODF3B (ENSMNEG00000035009) #25	SYCE3 (ENSMNEG00000040516) #26	CPT1B (ENSMNEG00000038572) #27	CHKB (ENSMNEG00000022712) #28	MAPK8IP2 (ENSMNEG00000040573) #29	ARSA (ENSMNEG00000027947) #30	SHANK3 (ENSMNEG00000002141) #31	ACR (ENSMNEG00000030295) #32	ENSMNEG00000028460 #33
Cercopithecinae_b	ANCESTRAL SPECIES	22	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551.j.b #33	ENSGT00910000146845.b.b.b
Olive baboon	MODERN SPECIES	7	MLC1 (ENSPANG00000031954)	MOV10L1 (ENSPANG00000006819) #7	PANX2 (ENSPANG00000017413) #8	TRABD (ENSPANG00000016596) #9	SELENOO (ENSPANG00000023976) #10	HDAC10 (ENSPANG00000000914) #12	MAPK12 (ENSPANG00000016972) #13	MAPK11 (ENSPANG00000049404) #14	PLXNB2 (ENSPANG00000015749) #15	DENND6B (ENSPANG00000017018) #16	PPP6R2 (ENSPANG00000006416) #17	SBF1 (ENSPANG00000006415) #18	ADM2 (ENSPANG00000022244) #19	MIOX (ENSPANG00000019957) #20	LMF2 (ENSPANG00000017594) #21	NCAPH2 (ENSPANG00000017014) #22	ENSPANG00000006414 #24	ENSPANG00000044548 #25	KLHDC7B (ENSPANG00000044794)	SYCE3 (ENSPANG00000039087) #26	CPT1B (ENSPANG00000015105) #27	CHKB (ENSPANG00000008683) #28	MAPK8IP2 (ENSPANG00000007364) #29	ARSA (ENSPANG00000000862) #30	ENSPANG00000036121 #33	ENSPANG00000023575 #32
Cercopithecinae_d	ANCESTRAL SPECIES	87	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551.j.b #33	ENSGT00910000146845.b.b.b
Sooty mangabey	MODERN SPECIES	662	PANX2 (ENSCATG00000042207) #8	TRABD (ENSCATG00000032558) #9	SELENOO (ENSCATG00000041757) #10	TUBGCP6 (ENSCATG00000035873) #11	HDAC10 (ENSCATG00000027781) #12	MAPK12 (ENSCATG00000034080) #13	MAPK11 (ENSCATG00000029109) #14	PLXNB2 (ENSCATG00000030111) #15	ENSCATG00000012909	DENND6B (ENSCATG00000037768) #16	PPP6R2 (ENSCATG00000030207) #17	SBF1 (ENSCATG00000039045) #18	ADM2 (ENSCATG00000021825) #19	MIOX (ENSCATG00000029162) #20	LMF2 (ENSCATG00000032122) #21	NCAPH2 (ENSCATG00000035036) #22	TYMP (ENSCATG00000013170) #24	ODF3B (ENSCATG00000036014) #25	SYCE3 (ENSCATG00000038279) #26	CPT1B (ENSCATG00000035816) #27	CHKB (ENSCATG00000043840) #28	MAPK8IP2 (ENSCATG00000043349) #29	ARSA (ENSCATG00000036686) #30	SHANK3 (ENSCATG00000021249) #31	ACR (ENSCATG00000043879) #32	ENSCATG00000034307 #33
Drill	MODERN SPECIES	927	MOV10L1 (ENSMLEG00000009215) #7	TRABD (ENSMLEG00000041596) #9	SELENOO (ENSMLEG00000041146) #10	ENSMLEG00000037837	TUBGCP6 (ENSMLEG00000030659) #11	MAPK12 (ENSMLEG00000037798) #13	MAPK11 (ENSMLEG00000035794) #14	PLXNB2 (ENSMLEG00000034672) #15	ENSMLEG00000025789	DENND6B (ENSMLEG00000031026) #16	PPP6R2 (ENSMLEG00000041697) #17	SBF1 (ENSMLEG00000041820) #18	ADM2 (ENSMLEG00000035411) #19	MIOX (ENSMLEG00000038020) #20	LMF2 (ENSMLEG00000039388) #21	NCAPH2 (ENSMLEG00000032326) #22	ODF3B (ENSMLEG00000035563) #25	SYCE3 (ENSMLEG00000035228) #26	CPT1B (ENSMLEG00000037510) #27	CHKB (ENSMLEG00000041075) #28	MAPK8IP2 (ENSMLEG00000009596) #29	ARSA (ENSMLEG00000004967) #30	ENSMLEG00000033361 ##31	ACR (ENSMLEG00000041861) #32	ENSMLEG00000032621 #33	ENSMLEG00000042131
Vervet Monkey	MODERN SPECIES	10	PANX2 (ENSCSAG00000005036) #8	TRABD (ENSCSAG00000005032) #9	SELENOO (ENSCSAG00000005028) #10	TUBGCP6 (ENSCSAG00000005024) #11	HDAC10 (ENSCSAG00000005004) #12	MAPK12 (ENSCSAG00000004951) #13	MAPK11 (ENSCSAG00000004931) #14	PLXNB2 (ENSCSAG00000004926) #15	ENSCSAG00000019289	DENND6B (ENSCSAG00000004892) #16	PPP6R2 (ENSCSAG00000004875) #17	SBF1 (ENSCSAG00000004869) #18	ADM2 (ENSCSAG00000004864) #19	MIOX (ENSCSAG00000004861) #20	LMF2 (ENSCSAG00000004848) #21	NCAPH2 (ENSCSAG00000004824) #22	SCO2 (ENSCSAG00000019290) #23	TYMP (ENSCSAG00000004810) #24	ODF3B (ENSCSAG00000004805) #25	ENSCSAG00000019291	SYCE3 (ENSCSAG00000004798) #26	CPT1B (ENSCSAG00000004797) #27	CHKB (ENSCSAG00000004793) #28	MAPK8IP2 (ENSCSAG00000004785) #29	ARSA (ENSCSAG00000004780) #30	SHANK3 (ENSCSAG00000004769) #31	ENSCSAG00000004708 #32	ENSCSAG00000004704 #32	ENSCSAG00000004698 #33
Rhinopithecus	ANCESTRAL SPECIES	185	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00910000146845.b.b
Golden snub-nosed monkey	MODERN SPECIES	788											PPP6R2 (ENSRROG00000022707) #17	SBF1 (ENSRROG00000029875) #18	ADM2 (ENSRROG00000042554) #19	MIOX (ENSRROG00000035524) #20	LMF2 (ENSRROG00000026855) #21	NCAPH2 (ENSRROG00000022225) #22	TYMP (ENSRROG00000035785) #24	ODF3B (ENSRROG00000032855) #25	SYCE3 (ENSRROG00000044463) #26	CPT1B (ENSRROG00000030043) #27	CHKB (ENSRROG00000043157) #28	ENSRROG00000033770 #29	ARSA (ENSRROG00000024121) #30	SHANK3 (ENSRROG00000033281) #31	ACR (ENSRROG00000030231) #32	ENSRROG00000031130 #33	ENSRROG00000030015	ENSRROG00000037502
Black snub-nosed monkey	MODERN SPECIES	895	ENSRBIG00000032441 #7	PANX2 (ENSRBIG00000027031) #8	TRABD (ENSRBIG00000044913) #9	SELENOO (ENSRBIG00000033660) #10	TUBGCP6 (ENSRBIG00000021319) #11	HDAC10 (ENSRBIG00000035382) #12	MAPK12 (ENSRBIG00000028039) #13	MAPK11 (ENSRBIG00000040923) #14	PLXNB2 (ENSRBIG00000029520) #15	DENND6B (ENSRBIG00000031097) #16	PPP6R2 (ENSRBIG00000030059) #17	SBF1 (ENSRBIG00000044863) #18	ADM2 (ENSRBIG00000032807) #19	MIOX (ENSRBIG00000039287) #20	LMF2 (ENSRBIG00000032866) #21	NCAPH2 (ENSRBIG00000042809) #22	TYMP (ENSRBIG00000037217) #24	SYCE3 (ENSRBIG00000039291) #26	CPT1B (ENSRBIG00000028289) #27	TNS3 (ENSRBIG00000027926)	ENSRBIG00000037751
Hominoidea	ANCESTRAL SPECIES	22	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00910000148076	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Hominidae	ANCESTRAL SPECIES	21	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00910000148076	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b.y #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	21	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00910000148076	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b.y #31	ENSGT00940000162430 #32	ENSGT00940000156551.h #33
Homo/Pan group	ANCESTRAL SPECIES	20	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00910000148076	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b.y #31	ENSGT00940000162430 #32	ENSGT00940000156551.h #33
Pan	ANCESTRAL SPECIES	23	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00910000147363	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.u #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00910000148076	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b.y #31	ENSGT00940000162430 #32
Chimpanzee	MODERN SPECIES	13	PANX2 (ENSPTRG00000014529) #8	TRABD (ENSPTRG00000014530) #9	SELENOO (ENSPTRG00000029395) #10	TUBGCP6 (ENSPTRG00000014532) #11	HDAC10 (ENSPTRG00000014534) #12	MAPK12 (ENSPTRG00000014535) #13	MAPK11 (ENSPTRG00000050982) #14	PLXNB2 (ENSPTRG00000047925) #15	ENSPTRG00000050594	DENND6B (ENSPTRG00000043092) #16	PPP6R2 (ENSPTRG00000014540) #17	SBF1 (ENSPTRG00000014541) #18	ADM2 (ENSPTRG00000049409) #19	MIOX (ENSPTRG00000014543) #20	LMF2 (ENSPTRG00000045690) #21	NCAPH2 (ENSPTRG00000014545) #22	SCO2 (ENSPTRG00000014546) #23	ENSPTRG00000052343	TYMP (ENSPTRG00000014547) #24	ODF3B (ENSPTRG00000034356) #25	KLHDC7B (ENSPTRG00000029392)	SYCE3 (ENSPTRG00000033708) #26	CPT1B (ENSPTRG00000014548) #27	CHKB (ENSPTRG00000029391) #28	MAPK8IP2 (ENSPTRG00000014549) #29	ARSA (ENSPTRG00000014550) #30	SHANK3 (ENSPTRG00000014553) #31	ACR (ENSPTRG00000014554) #32	ENSPTRG00000029388	ENSPTRG00000048437 #33
Bonobo	MODERN SPECIES	13	MOV10L1 (ENSPPAG00000029459) #7	PANX2 (ENSPPAG00000035037) #8	TRABD (ENSPPAG00000036776) #9	ENSPPAG00000027121 #10	TUBGCP6 (ENSPPAG00000028572) #11	HDAC10 (ENSPPAG00000041270) #12	MAPK12 (ENSPPAG00000029760) #13	MAPK11 (ENSPPAG00000036061) #14	PLXNB2 (ENSPPAG00000042446) #15	DENND6B (ENSPPAG00000032597) #16	PPP6R2 (ENSPPAG00000029750) #17	SBF1 (ENSPPAG00000040949) #18	ADM2 (ENSPPAG00000037772) #19	MIOX (ENSPPAG00000039164) #20	LMF2 (ENSPPAG00000033872) #21	NCAPH2 (ENSPPAG00000042287) #22	SCO2 (ENSPPAG00000007022) #23	ENSPPAG00000037131 #24	ODF3B (ENSPPAG00000038370) #25	ENSPPAG00000002186	SYCE3 (ENSPPAG00000038165) #26	CPT1B (ENSPPAG00000023865) #27	CHKB (ENSPPAG00000027692) #28	MAPK8IP2 (ENSPPAG00000029752) #29	ARSA (ENSPPAG00000017796) #30	ENSPPAG00000027489 ##31	ACR (ENSPPAG00000027679) #32	ENSPPAG00000028590
Human	MODERN SPECIES	14	MOV10L1 (ENSG00000073146) #7	PANX2 (ENSG00000073150) #8	TRABD (ENSG00000170638) #9	SELENOO (ENSG00000073169) #10	TUBGCP6 (ENSG00000128159) #11	HDAC10 (ENSG00000100429) #12	MAPK12 (ENSG00000188130) #13	MAPK11 (ENSG00000185386) #14	PLXNB2 (ENSG00000196576) #15	DENND6B (ENSG00000205593) #16	PPP6R2 (ENSG00000100239) #17	SBF1 (ENSG00000100241) #18	ADM2 (ENSG00000128165) #19	MIOX (ENSG00000100253) #20	LMF2 (ENSG00000100258) #21	NCAPH2 (ENSG00000025770) #22	SCO2 (ENSG00000284194) #23	TYMP (ENSG00000025708) #24	ODF3B (ENSG00000177989) #25	KLHDC7B (ENSG00000130487)	SYCE3 (ENSG00000217442) #26	CPT1B (ENSG00000205560) #27	CHKB (ENSG00000100288) #28	MAPK8IP2 (ENSG00000008735) #29	ARSA (ENSG00000100299) #30	SHANK3 (ENSG00000251322) #31	ACR (ENSG00000100312) #32	RABL2B (ENSG00000079974) #33
Gorilla	MODERN SPECIES	13	MOV10L1 (ENSGGOG00000010110) #7	PANX (ENSGGOG00000014386) #8	TRABD (ENSGGOG00000014397) #9	SELENOO (ENSGGOG00000014406) #10	TUBGCP6 (ENSGGOG00000034816) #11	HDAC10 (ENSGGOG00000014445) #12	MAPK12 (ENSGGOG00000014464) #13	MAPK11 (ENSGGOG00000027293) #14	PLXNB2 (ENSGGOG00000006625) #15	DENND6B (ENSGGOG00000013615) #16	PPP6R2 (ENSGGOG00000012995) #17	SBF1 (ENSGGOG00000013005) #18	ENSGGOG00000013032	MIOX (ENSGGOG00000013037) #20	LMF2 (ENSGGOG00000002426) #21	NCAPH2 (ENSGGOG00000010975) #22	SCO2 (ENSGGOG00000010986) #23	TYMP (ENSGGOG00000010990) #24	ODF3B (ENSGGOG00000010999) #25	ENSGGOG00000002851	SYCE3 (ENSGGOG00000002854) #26	CPT1B (ENSGGOG00000005632) #27	CHKB (ENSGGOG00000005629) #28	MAPK8IP2 (ENSGGOG00000007277) #29	ARSA (ENSGGOG00000007285) #30	SHANK3 (ENSGGOG00000011582) #31	ACR (ENSGGOG00000025349) #32
Orangutan	MODERN SPECIES	13	TTLL8 (ENSPPYG00000011971)	MLC1 (ENSPPYG00000011973)	MOV10L1 (ENSPPYG00000011974) #7	PANX2 (ENSPPYG00000011975) #8	TRABD (ENSPPYG00000011976) #9	SELENOO (ENSPPYG00000011977) #10	HDAC10 (ENSPPYG00000011979) #12	MAPK12 (ENSPPYG00000011980) #13	MAPK11 (ENSPPYG00000011981) #14	PLXNB2 (ENSPPYG00000011982) #15	DENND6B (ENSPPYG00000011984) #16	PPP6R2 (ENSPPYG00000011985) #17	ADM2 (ENSPPYG00000040451) #19	MIOX (ENSPPYG00000011988) #20	LMF2 (ENSPPYG00000011989) #21	NCAPH2 (ENSPPYG00000011990) #22	SCO2 (ENSPPYG00000011991) #23	TYMP (ENSPPYG00000011992) #24	ENSPPYG00000033211 #25	ENSPPYG00000011993	SYCE3 (ENSPPYG00000039038) #26	CPT1B (ENSPPYG00000011994) #27	CHKB (ENSPPYG00000031935) #28	MAPK8IP2 (ENSPPYG00000011996) #29	ARSA (ENSPPYG00000011997) #30	SHANK3 (ENSPPYG00000011998) #31	ENSPPYG00000011999 #32	RABL2B (ENSPPYG00000012000) #33	ENSPPYG00000038598	ENSPPYG00000010610
Gibbon	MODERN SPECIES	22	PANX2 (ENSNLEG00000000458) #8	ENSNLEG00000000464 #9	ENSNLEG00000000489	ENSNLEG00000035366 #10	ENSNLEG00000001475 #11	HDAC10 (ENSNLEG00000000494) #12	MAPK12 (ENSNLEG00000000606) #13	MAPK11 (ENSNLEG00000000628) #14	PLXNB2 (ENSNLEG00000000633) #15	DENND6B (ENSNLEG00000000634) #16	PPP6R2 (ENSNLEG00000000637) #17	SBF1 (ENSNLEG00000026690) #18	ADM2 (ENSNLEG00000000721) #19	MIOX (ENSNLEG00000000729) #20	ENSNLEG00000000757 #21	NCAPH2 (ENSNLEG00000000768) #22	SCO2 (ENSNLEG00000000933) #23	ENSNLEG00000033749	ENSNLEG00000000940 #24	ODF3B (ENSNLEG00000000946) #25	ENSNLEG00000029667 #26	CPT1B (ENSNLEG00000000958) #27	CHKB (ENSNLEG00000001003) #28	ENSNLEG00000034619 #29	ARSA (ENSNLEG00000001104) #30	SHANK3 (ENSNLEG00000001182) #31	ACR (ENSNLEG00000001212) #32	ENSNLEG00000030435 #33	ENSNLEG00000009151
Platyrrhini	ANCESTRAL SPECIES	30	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211.i #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Cebidae	ANCESTRAL SPECIES	31	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211.i #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Cebidae_a	ANCESTRAL SPECIES	70	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211.i #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00910000148076	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Capuchin	MODERN SPECIES	329	MLC1 (ENSCCAG00000035580)	MOV10L1 (ENSCCAG00000020759) #7	PANX2 (ENSCCAG00000028351) #8	TRABD (ENSCCAG00000012057) #9	SELENOO (ENSCCAG00000036681) #10	TUBGCP6 (ENSCCAG00000023364) #11	MAPK12 (ENSCCAG00000031607) #13	MAPK11 (ENSCCAG00000038007) #14	PLXNB2 (ENSCCAG00000026967) #15	DENND6B (ENSCCAG00000036945) #16	PPP6R2 (ENSCCAG00000032805) #17	SBF1 (ENSCCAG00000036227) #18	ADM2 (ENSCCAG00000026737) #19	MIOX (ENSCCAG00000035210) #20	LMF2 (ENSCCAG00000021039) #21	NCAPH2 (ENSCCAG00000013221) #22	TYMP (ENSCCAG00000033017) #24	ENSCCAG00000030307 #25	SYCE3 (ENSCCAG00000035232) #26	CPT1B (ENSCCAG00000030844) #27	CHKB (ENSCCAG00000032870) #28	MAPK8IP2 (ENSCCAG00000022883) #29	ARSA (ENSCCAG00000031741) #30	SHANK3 (ENSCCAG00000033121) #31	ACR (ENSCCAG00000021049) #32	ENSCCAG00000025944 #33
Bolivian squirrel monkey	MODERN SPECIES	94	PANX2 (ENSSBOG00000020306) #8	TRABD (ENSSBOG00000027202) #9	SELENOO (ENSSBOG00000024106) #10	TUBGCP6 (ENSSBOG00000032357) #11	HDAC10 (ENSSBOG00000024552) #12	MAPK12 (ENSSBOG00000021144) #13	MAPK11 (ENSSBOG00000034937) #14	PLXNB2 (ENSSBOG00000024902) #15	DENND6B (ENSSBOG00000029018) #16	PPP6R2 (ENSSBOG00000033652) #17	ENSSBOG00000026471	SBF1 (ENSSBOG00000035233) #18	ADM2 (ENSSBOG00000035706) #19	MIOX (ENSSBOG00000025777) #20	LMF2 (ENSSBOG00000031093) #21	NCAPH2 (ENSSBOG00000026340) #22	ENSSBOG00000021451	TYMP (ENSSBOG00000035212) #24	ENSSBOG00000018910 #25	SYCE3 (ENSSBOG00000020713) #26	CPT1B (ENSSBOG00000031413) #27	CHKB (ENSSBOG00000015516) #28	MAPK8IP2 (ENSSBOG00000028182) #29	ARSA (ENSSBOG00000025351) #30	SHANK3 (ENSSBOG00000012932) #31	ACR (ENSSBOG00000027884) #32	ENSSBOG00000033266 #33	ENSSBOG00000021779	RRP7A (ENSSBOG00000009234)	SERHL2 (ENSSBOG00000026990)	NFAM1 (ENSSBOG00000032935)
Marmoset	MODERN SPECIES		PANX2 (ENSCJAG00000003392) #8	TRABD (ENSCJAG00000003384) #9	SELENOO (ENSCJAG00000003360) #10	TUBGCP6 (ENSCJAG00000003351) #11	HDAC10 (ENSCJAG00000003337) #12	MAPK12 (ENSCJAG00000003322) #13	MAPK11 (ENSCJAG00000078559) #14	PLXNB2 (ENSCJAG00000003197) #15	DENND6B (ENSCJAG00000077008) #16	PPP6R2 (ENSCJAG00000019031) #17	NDUFA4 (ENSCJAG00000086289)	SBF1 (ENSCJAG00000019051) #18	ENSCJAG00000041530 #19	MIOX (ENSCJAG00000019118) #20	LMF2 (ENSCJAG00000019135) #21	NCAPH2 (ENSCJAG00000019155) #22	SCO2 (ENSCJAG00000019173) #23	TYMP (ENSCJAG00000037938) #24	ODF3B (ENSCJAG00000019177) #25	KLHDC7B (ENSCJAG00000073214)	SYCE3 (ENSCJAG00000041610) #26	CPT1B (ENSCJAG00000018317) #27	CHKB (ENSCJAG00000018358) #28	MAPK8IP2 (ENSCJAG00000018368) #29	ARSA (ENSCJAG00000003186) #30	SHANK3 (ENSCJAG00000018406) #31	ACR (ENSCJAG00000018409) #32	ENSCJAG00000018414 #33	ENSCJAG00000071555
Mas night monkey	MODERN SPECIES	1297	ENSANAG00000018876	PANX2 (ENSANAG00000032907) #8	TRABD (ENSANAG00000028851) #9	SELENOO (ENSANAG00000027197) #10	TUBGCP6 (ENSANAG00000027964) #11	HDAC10 (ENSANAG00000035124) #12	MAPK12 (ENSANAG00000034296) #13	MAPK11 (ENSANAG00000035217) #14	PLXNB2 (ENSANAG00000025480) #15	DENND6B (ENSANAG00000009719) #16	ENSANAG00000031328 #17	SBF1 (ENSANAG00000032281) #18	ADM2 (ENSANAG00000036267) #19	ENSANAG00000036962 #20	LMF2 (ENSANAG00000022172) #21	NCAPH2 (ENSANAG00000037415) #22	TYMP (ENSANAG00000030523) #24	ENSANAG00000016215 #25	SYCE3 (ENSANAG00000035469) #26
Tarsier	MODERN SPECIES	1686														MIOX (ENSTSYG00000028971) #20	LMF2 (ENSTSYG00000013787) #21	NCAPH2 (ENSTSYG00000035542) #22
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Mouse lemur	MODERN SPECIES	29	MOV10L1 (ENSMICG00000007267) #7	PANX2 (ENSMICG00000037105) #8	TRABD (ENSMICG00000030662) #9	SELENOO (ENSMICG00000017789) #10	TUBGCP6 (ENSMICG00000017790) #11	HDAC10 (ENSMICG00000017791) #12	MAPK12 (ENSMICG00000027958) #13	MAPK11 (ENSMICG00000028966) #14	PLXNB2 (ENSMICG00000005737) #15	DENND6B (ENSMICG00000033648) #16	PPP6R2 (ENSMICG00000012829) #17	SBF1 (ENSMICG00000012876) #18	ADM2 (ENSMICG00000043329) #19	MIOX (ENSMICG00000046648) #20	LMF2 (ENSMICG00000001673) #21	NCAPH2 (ENSMICG00000012958) #22	TYMP (ENSMICG00000013000) #24	ODF3B (ENSMICG00000027739) #25	ENSMICG00000031623	SYCE3 (ENSMICG00000034240) #26	CPT1B (ENSMICG00000000856) #27	MAPK8IP2 (ENSMICG00000000871) #29	CHKB (ENSMICG00000044169) #28	ARSA (ENSMICG00000036714) #30	SHANK3 (ENSMICG00000029739) #31	ENSMICG00000000907	ENSMICG00000031301 #33	ENSMICG00000002190	ENSMICG00000010165	HMOX1 (ENSMICG00000041807)	TOM1 (ENSMICG00000010149)
Lemuriformes_a	ANCESTRAL SPECIES	129	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Coquerels sifaka	MODERN SPECIES	418	PANX2 (ENSPCOG00000024289) #8	ENSPCOG00000020044 #9	SELENOO (ENSPCOG00000011964) #10	TUBGCP6 (ENSPCOG00000019138) #11	HDAC10 (ENSPCOG00000018273) #12	MAPK12 (ENSPCOG00000018807) #13	MAPK11 (ENSPCOG00000019102) #14	PLXNB2 (ENSPCOG00000023873) #15	DENND6B (ENSPCOG00000016120) #16	ENSPCOG00000023366	PPP6R2 (ENSPCOG00000027708) #17	SBF1 (ENSPCOG00000028310) #18	ADM2 (ENSPCOG00000017808) #19	MIOX (ENSPCOG00000014546) #20	LMF2 (ENSPCOG00000026645) #21	NCAPH2 (ENSPCOG00000006726) #22	TYMP (ENSPCOG00000022381) #24	ODF3B (ENSPCOG00000025677) #25	ENSPCOG00000001058	SYCE3 (ENSPCOG00000019404) #26	CPT1B (ENSPCOG00000017234) #27	CHKB (ENSPCOG00000023771) #28	MAPK8IP2 (ENSPCOG00000015005) #29	ARSA (ENSPCOG00000016407) #30	SHANK3 (ENSPCOG00000014832) #31	ACR (ENSPCOG00000024596) #32	ENSPCOG00000024865 #33	VOPP1 (ENSPCOG00000026685)	LANCL2 (ENSPCOG00000010923)	EGFR (ENSPCOG00000021048)	SEC61G (ENSPCOG00000014561)
Greater bamboo lemur	MODERN SPECIES	454												PPP6R2 (ENSPSMG00000006551) #17	ENSPSMG00000006449 #18	ADM2 (ENSPSMG00000006443) #19	MIOX (ENSPSMG00000006437) #20	NCAPH2 (ENSPSMG00000006191) #22	SCO2 (ENSPSMG00000006120) #23	TYMP (ENSPSMG00000006092) #24	ODF3B (ENSPSMG00000006048) #25	SYCE3 (ENSPSMG00000006034) #26	CPT1B (ENSPSMG00000005896) #27	CHKB (ENSPSMG00000005845) #28	MAPK8IP2 (ENSPSMG00000005826) #29	ARSA (ENSPSMG00000005789) #30
Bushbaby	MODERN SPECIES	122	MLC1 (ENSOGAG00000013281)	MOV10L1 (ENSOGAG00000013283) #7	PANX2 (ENSOGAG00000033894) #8	TRABD (ENSOGAG00000006316) #9	SELENOO (ENSOGAG00000014148) #10	TUBGCP6 (ENSOGAG00000014151) #11	HDAC10 (ENSOGAG00000014163) #12	MAPK12 (ENSOGAG00000014169) #13	MAPK11 (ENSOGAG00000014172) #14	PLXNB2 (ENSOGAG00000014176) #15	DENND6B (ENSOGAG00000026256) #16	PPP6R2 (ENSOGAG00000013449) #17	SBF1 (ENSOGAG00000016393) #18	MIOX (ENSOGAG00000003520) #20	LMF2 (ENSOGAG00000016425) #21	NCAPH2 (ENSOGAG00000016430) #22	SCO2 (ENSOGAG00000033205) #23	TYMP (ENSOGAG00000027276) #24	ODF3B (ENSOGAG00000034838) #25	ENSOGAG00000029834	SYCE3 (ENSOGAG00000034222) #26	CPT1B (ENSOGAG00000001411) #27	CHKB (ENSOGAG00000000161) #28	MAPK8IP2 (ENSOGAG00000031163) #29	ARSA (ENSOGAG00000000163) #30	SHANK3 (ENSOGAG00000029576) #31	ENSOGAG00000034408	ENSOGAG00000009123 #33
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Eulipotyphla	ANCESTRAL SPECIES	351															ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24
Hedgehog	MODERN SPECIES	374															LMF2 (ENSEEUG00000001903) #21	NCAPH2 (ENSEEUG00000001948) #22	SCO2 (ENSEEUG00000002025) #23	ENSEEUG00000002048 #24
Common shrew	MODERN SPECIES	1323																NCAPH2 (ENSSARG00000007020) #22
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00930000152681	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00930000152681	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Carnivora	ANCESTRAL SPECIES	3	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00930000152681	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Caniformia	ANCESTRAL SPECIES	20	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Caniformia_b	ANCESTRAL SPECIES	18	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Ursidae	ANCESTRAL SPECIES	13	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Ursus	ANCESTRAL SPECIES	158	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.a ##31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
American black bear	MODERN SPECIES	1582											PPP6R2 (ENSUAMG00000001499) #17	ENSUAMG00000001526 #18	ADM2 (ENSUAMG00000001842) #19	MIOX (ENSUAMG00000001849) #20	LMF2 (ENSUAMG00000001862) #21	NCAPH2 (ENSUAMG00000001923) #22	SCO2 (ENSUAMG00000001947) #23	ODF3B (ENSUAMG00000001953) #25	ENSUAMG00000001967	SYCE3 (ENSUAMG00000001972) #26	CPT1B (ENSUAMG00000001979) #27	CHKB (ENSUAMG00000001986) #28	MAPK8IP2 (ENSUAMG00000001991) #29	ARSA (ENSUAMG00000001994) #30
Polar bear	MODERN SPECIES	248	CRELD2 (ENSUMAG00000018802)	ENSUMAG00000018793	TTLL8 (ENSUMAG00000018756)	MLC1 (ENSUMAG00000018731)	MOV10L1 (ENSUMAG00000018693) #7	TRABD (ENSUMAG00000018679) #9	SELENOO (ENSUMAG00000018671) #10	TUBGCP6 (ENSUMAG00000018600) #11	ENSUMAG00000018571 #12	MAPK12 (ENSUMAG00000018557) #13	PLXNB2 (ENSUMAG00000018205) #15	DENND6B (ENSUMAG00000018078) #16	PPP6R2 (ENSUMAG00000018036) #17	SBF1 (ENSUMAG00000017459) #18	MIOX (ENSUMAG00000017310) #20	NCAPH2 (ENSUMAG00000017272) #22	SCO2 (ENSUMAG00000017261) #23	ODF3B (ENSUMAG00000017256) #25	SYCE3 (ENSUMAG00000017246) #26	CPT1B (ENSUMAG00000017239) #27	CHKB (ENSUMAG00000017232) #28	MAPK8IP2 (ENSUMAG00000017179) #29	ARSA (ENSUMAG00000017159) #30	ENSUMAG00000017144 ##31	ENSUMAG00000017121 #32	ENSUMAG00000017116 #33
Giant Panda	MODERN SPECIES	6	MOV10L1 (ENSAMEG00000002296) #7	PANX2 (ENSAMEG00000002335) #8	ENSAMEG00000002346 #9	SELENOO (ENSAMEG00000002359) #10	TUBGCP6 (ENSAMEG00000002382) #11	HDAC10 (ENSAMEG00000002414) #12	MAPK12 (ENSAMEG00000002456) #13	MAPK11 (ENSAMEG00000002468) #14	PLXNB2 (ENSAMEG00000002506) #15	DENND6B (ENSAMEG00000002617) #16	PPP6R2 (ENSAMEG00000002667) #17	SBF1 (ENSAMEG00000002766) #18	ADM2 (ENSAMEG00000002138) #19	MIOX (ENSAMEG00000002890) #20	LMF2 (ENSAMEG00000002923) #21	NCAPH2 (ENSAMEG00000002961) #22	SCO2 (ENSAMEG00000019080) #23	ENSAMEG00000002991 #25	ENSAMEG00000002888	SYCE3 (ENSAMEG00000027140) #26	CPT1B (ENSAMEG00000002999) #27	MAPK8IP2 (ENSAMEG00000003087) #29	ARSA (ENSAMEG00000003106) #30	SHANK3 (ENSAMEG00000024952) #31	ACR (ENSAMEG00000003160) #32	ENSAMEG00000025424 #33
Mustelinae	ANCESTRAL SPECIES	115	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Ferret	MODERN SPECIES	374	PANX2 (ENSMPUG00000002416) #8	ENSMPUG00000018765	TRABD (ENSMPUG00000002395) #9	ENSMPUG00000002388	TUBGCP6 (ENSMPUG00000002380) #11	SELENOO (ENSMPUG00000002327) #10	HDAC10 (ENSMPUG00000002331) #12	MAPK12 (ENSMPUG00000002323) #13	MAPK11 (ENSMPUG00000002272) #14	PLXNB2 (ENSMPUG00000002263) #15	DENND6B (ENSMPUG00000002227) #16	PPP6R2 (ENSMPUG00000002221) #17	SBF1 (ENSMPUG00000002054) #18	MIOX (ENSMPUG00000002031) #20	LMF2 (ENSMPUG00000001982) #21	NCAPH2 (ENSMPUG00000001977) #22	SCO2 (ENSMPUG00000018763) #23	ODF3B (ENSMPUG00000001957) #25	CPT1B (ENSMPUG00000001953) #27	MAPK8IP2 (ENSMPUG00000001952) #29	ARSA (ENSMPUG00000001949) #30	SHANK3 (ENSMPUG00000001864) #31	ACR (ENSMPUG00000001839) #32	ENSMPUG00000001806 #33
American mink	MODERN SPECIES	306	MOV10L1 (ENSNVIG00000004105) #7	PANX2 (ENSNVIG00000004223) #8	TRABD (ENSNVIG00000004252) #9	ENSNVIG00000004271	SELENOO (ENSNVIG00000004272) #10	TUBGCP6 (ENSNVIG00000004295) #11	HDAC10 (ENSNVIG00000004632) #12	MAPK12 (ENSNVIG00000004659) #13	MAPK11 (ENSNVIG00000004667) #14	PLXNB2 (ENSNVIG00000004694) #15	DENND6B (ENSNVIG00000004784) #16	PPP6R2 (ENSNVIG00000005084) #17	SBF1 (ENSNVIG00000005392) #18	ADM2 (ENSNVIG00000005588) #19	MIOX (ENSNVIG00000005600) #20	NCAPH2 (ENSNVIG00000005712) #22	SCO2 (ENSNVIG00000005761) #23	ODF3B (ENSNVIG00000005790) #25	SYCE3 (ENSNVIG00000005865) #26	CPT1B (ENSNVIG00000005885) #27	ENSNVIG00000006057 #28	MAPK8IP2 (ENSNVIG00000006077) #29	ARSA (ENSNVIG00000006114) #30	ENSNVIG00000006139 ##31	ENSNVIG00000006162 #32	ENSNVIG00000006221 #33
Canidae	ANCESTRAL SPECIES	10	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Canis_lupus	ANCESTRAL SPECIES	9	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT01090000260011.A.d.b.b.cb	ENSGT01090000260006.A.c.a.b.a.k	ENSGT01090000260011.A.d.b.a.a.g.l.a	ENSGT01090000260006.A.c.a.b.a.l
Dog	MODERN SPECIES	1	MOV10L1 (ENSCAFG00845007199) #7	PANX (ENSCAFG00845006929) #8	TRABD (ENSCAFG00845006809) #9	ENSCAFG00845006744	TUBGCP6 (ENSCAFG00845006433) #11	HDAC10 (ENSCAFG00845006232) #12	MAPK12 (ENSCAFG00845005996) #13	ENSCAFG00845005951 #14	SELENOO (ENSCAFG00845005911) #10	PLXNB2 (ENSCAFG00845005759) #15	DENND6B (ENSCAFG00845005546) #16	PPP6R2 (ENSCAFG00845005369) #17	SBF1 (ENSCAFG00845005220) #18	ADM2 (ENSCAFG00845028178) #19	MIOX (ENSCAFG00845028088) #20	NCAPH2 (ENSCAFG00845027923) #22	SCO2 (ENSCAFG00845027878) #23	ENSCAFG00845027794 #25	ENSCAFG00845027733	SYCE3 (ENSCAFG00845027705) #26	CPT1B (ENSCAFG00845027564) #27	CHKB (ENSCAFG00845027398) #28	MAPK8IP2 (ENSCAFG00845027183) #29	ARSA (ENSCAFG00845026951) #30	SHANK3 (ENSCAFG00845026673) #31	ACR (ENSCAFG00845026531) #32	ENSCAFG00845026404 #33	ENSCAFG00845026314	ENSCAFG00845026284	OR6C87 (ENSCAFG00845026252)	ENSCAFG00845026230
Dingo	MODERN SPECIES	307	MLC1 (ENSCAFG00020008700)	MOV10L1 (ENSCAFG00020008588) #7	PANX2 (ENSCAFG00020008571) #8	TRABD (ENSCAFG00020008567) #9	ENSCAFG00020008561	SELENOO (ENSCAFG00020008560) #10	HDAC10 (ENSCAFG00020008448) #12	MAPK12 (ENSCAFG00020008434) #13	MAPK11 (ENSCAFG00020008293) #14	PLXNB2 (ENSCAFG00020008256) #15	DENND6B (ENSCAFG00020008221) #16	PPP6R2 (ENSCAFG00020008203) #17	SBF1 (ENSCAFG00020008174) #18	ADM2 (ENSCAFG00020008157) #19	MIOX (ENSCAFG00020008151) #20	NCAPH2 (ENSCAFG00020007527) #22	SCO2 (ENSCAFG00020007485) #23	ODF3B (ENSCAFG00020007467) #25	SYCE3 (ENSCAFG00020007459) #26	CPT1B (ENSCAFG00020007447) #27	CHKB (ENSCAFG00020007437) #28	MAPK8IP2 (ENSCAFG00020007360) #29	ARSA (ENSCAFG00020007348) #30	SHANK3 (ENSCAFG00020006965) #31	ACR (ENSCAFG00020006945) #32	ENSCAFG00020006938 #33	OR6C75 (ENSCAFG00020006925)	ENSCAFG00020006924	ENSCAFG00020006914	ENSCAFG00020006908	ENSCAFG00020006894
Red fox	MODERN SPECIES	165	MOV10L1 (ENSVVUG00000025076) #7	PANX2 (ENSVVUG00000025090) #8	TRABD (ENSVVUG00000025092) #9	SELENOO (ENSVVUG00000025095) #10	TUBGCP6 (ENSVVUG00000025099) #11	HDAC10 (ENSVVUG00000025224) #12	MAPK12 (ENSVVUG00000025516) #13	MAPK11 (ENSVVUG00000025520) #14	PLXNB2 (ENSVVUG00000025525) #15	DENND6B (ENSVVUG00000025541) #16	PPP6R2 (ENSVVUG00000025547) #17	SBF1 (ENSVVUG00000025578) #18	ADM2 (ENSVVUG00000025596) #19	MIOX (ENSVVUG00000025597) #20	LMF2 (ENSVVUG00000025601) #21	NCAPH2 (ENSVVUG00000025607) #22	SCO2 (ENSVVUG00000025611) #23	ODF3B (ENSVVUG00000025615) #25	CPT1B (ENSVVUG00000025630) #27	CHKB (ENSVVUG00000025671) #28	MAPK8IP2 (ENSVVUG00000025675) #29	ARSA (ENSVVUG00000025698) #30	SHANK3 (ENSVVUG00000025723) #31	ACR (ENSVVUG00000025759) #32	RABL2B (ENSVVUG00000025761) #33	ENSVVUG00000025764
Felidae	ANCESTRAL SPECIES	2	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00930000152681	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Panthera	ANCESTRAL SPECIES		ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00930000152681	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Tiger	MODERN SPECIES	453	ENSPTIG00000016266	ZBED4 (ENSPTIG00000016847)	CRELD2 (ENSPTIG00000017620)	ENSPTIG00000021022	MLC1 (ENSPTIG00000007478)	MOV10L1 (ENSPTIG00000009191) #7	ENSPTIG00000018994 #8	ENSPTIG00000019788 #9	SELENOO (ENSPTIG00000020200) #10	ENSPTIG00000017069	MAPK12 (ENSPTIG00000021866) #13	MAPK11 (ENSPTIG00000001133) #14	PPP6R2 (ENSPTIG00000015038) #17	ENSPTIG00000002524 #18	MIOX (ENSPTIG00000006796) #20	NCAPH2 (ENSPTIG00000011603) #22	ODF3B (ENSPTIG00000017440) #25	ENSPTIG00000018825	SYCE3 (ENSPTIG00000019508) #26	CPT1B (ENSPTIG00000020471) #27	CHKB (ENSPTIG00000005222) #28	ENSPTIG00000006838 #29	ARSA (ENSPTIG00000007938) #30	ENSPTIG00000013263 ##31	ACR (ENSPTIG00000018043) #32	ENSPTIG00000018747 #33
Panthera_a	ANCESTRAL SPECIES	12	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00930000152681	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
leopard	MODERN SPECIES	13	MLC1 (ENSPPRG00000023360)	MOV10L1 (ENSPPRG00000023466) #7	PANX2 (ENSPPRG00000024219) #8	TRABD (ENSPPRG00000024382) #9	SELENOO (ENSPPRG00000024553) #10	ENSPPRG00000024711	ENSPPRG00000024810 #13	MAPK12 (ENSPPRG00000024827) #13	MAPK11 (ENSPPRG00000024847) #14	PLXNB2 (ENSPPRG00000024871) #15	DENND6B (ENSPPRG00000024894) #16	PPP6R2 (ENSPPRG00000024920) #17	SBF1 (ENSPPRG00000024993) #18	ADM2 (ENSPPRG00000025031) #19	MIOX (ENSPPRG00000025037) #20	NCAPH2 (ENSPPRG00000025056) #22	SCO2 (ENSPPRG00000020687) #23	ODF3B (ENSPPRG00000025074) #25	SYCE3 (ENSPPRG00000025078) #26	ENSPPRG00000021649	CPT1B (ENSPPRG00000021457) #27	CHKB (ENSPPRG00000017866) #28	ARSA (ENSPPRG00000017007) #30	ACR (ENSPPRG00000014750) #32	ENSPPRG00000014642 #33
lion	MODERN SPECIES	7	TRABD (ENSPLOG00000008739) #9	ENSPLOG00000008695	SELENOO (ENSPLOG00000008669) #10	TUBGCP6 (ENSPLOG00000007958) #11	ENSPLOG00000007837 #12	ENSPLOG00000007802	MAPK12 (ENSPLOG00000007665) #13	MAPK11 (ENSPLOG00000007610) #14	PLXNB2 (ENSPLOG00000007583) #15	DENND6B (ENSPLOG00000006299) #16	PPP6R2 (ENSPLOG00000006236) #17	SBF1 (ENSPLOG00000006055) #18	ADM2 (ENSPLOG00000005975) #19	MIOX (ENSPLOG00000005911) #20	LMF2 (ENSPLOG00000005864) #21	NCAPH2 (ENSPLOG00000005817) #22	SCO2 (ENSPLOG00000005803) #23	ODF3B (ENSPLOG00000005759) #25	ENSPLOG00000005722	SYCE3 (ENSPLOG00000005712) #26	CPT1B (ENSPLOG00000005600) #27	CHKB (ENSPLOG00000005438) #28	MAPK8IP2 (ENSPLOG00000005380) #29	ARSA (ENSPLOG00000020820) #30	ENSPLOG00000020786 #31	ENSPLOG00000020768 #31	ACR (ENSPLOG00000020753) #32	ENSPLOG00000020622 #33	TBC1D22A (ENSPLOG00000020409)	ENSPLOG00000020363	GRAMD4 (ENSPLOG00000020261)
Cat	MODERN SPECIES	238	PANX2 (ENSFCAG00000024028) #8	TRABD (ENSFCAG00000011908) #9	SELENOO (ENSFCAG00000018895) #10	TUBGCP6 (ENSFCAG00000011909) #11	ENSFCAG00000051897	HDAC10 (ENSFCAG00000011910) #12	MAPK12 (ENSFCAG00000011911) #13	MAPK11 (ENSFCAG00000011912) #14	PLXNB2 (ENSFCAG00000011914) #15	DENND6B (ENSFCAG00000011915) #16	PPP6R2 (ENSFCAG00000004431) #17	SBF1 (ENSFCAG00000004434) #18	ADM2 (ENSFCAG00000038840) #19	MIOX (ENSFCAG00000013030) #20	LMF2 (ENSFCAG00000013032) #21	NCAPH2 (ENSFCAG00000013034) #22	SCO2 (ENSFCAG00000013035) #23	ODF3B (ENSFCAG00000021933) #25	KLHDC7B (ENSFCAG00000013036)	SYCE3 (ENSFCAG00000029187) #26	CPT1B (ENSFCAG00000010593) #27	CHKB (ENSFCAG00000010594) #28	MAPK8IP2 (ENSFCAG00000027869) #29	ARSA (ENSFCAG00000010597) #30	ENSFCAG00000052143 #31	ACR (ENSFCAG00000010600) #32	ENSFCAG00000033642 #33
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Equus	ANCESTRAL SPECIES	21	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32
Horse	MODERN SPECIES	20	MLC1 (ENSECAG00000024580)	MOV10L1 (ENSECAG00000011063) #7	PANX2 (ENSECAG00000021702) #8	TRABD (ENSECAG00000022213) #9	SELENOO (ENSECAG00000024898) #10	TUBGCP6 (ENSECAG00000011168) #11	HDAC10 (ENSECAG00000012732) #12	MAPK12 (ENSECAG00000017373) #13	MAPK11 (ENSECAG00000004780) #14	PLXNB2 (ENSECAG00000019242) #15	DENND6B (ENSECAG00000013516) #16	PPP6R2 (ENSECAG00000007827) #17	SBF1 (ENSECAG00000022103) #18	MIOX (ENSECAG00000020700) #20	LMF2 (ENSECAG00000008435) #21	NCAPH2 (ENSECAG00000019018) #22	SCO2 (ENSECAG00000001560) #23	TYMP (ENSECAG00000001072) #24	ODF3B (ENSECAG00000010296) #25	KLHDC7B (ENSECAG00000001641)	CPT1B (ENSECAG00000012793) #27	CHKB (ENSECAG00000013600) #28	MAPK8IP2 (ENSECAG00000017304) #29	ARSA (ENSECAG00000020104) #30	ENSECAG00000011685	SHANK3 (ENSECAG00000011905) #31	ACR (ENSECAG00000013888) #32
Donkey	MODERN SPECIES	11	MOV10L1 (ENSEASG00005021379) #7	PANX2 (ENSEASG00005021345) #8	TRABD (ENSEASG00005021341) #9	SELENOO (ENSEASG00005021337) #10	TUBGCP6 (ENSEASG00005021328) #11	HDAC10 (ENSEASG00005021310) #12	MAPK12 (ENSEASG00005021298) #13	MAPK11 (ENSEASG00005021293) #14	PLXNB2 (ENSEASG00005020988) #15	DENND6B (ENSEASG00005020818) #16	PPP6R2 (ENSEASG00005020813) #17	SBF1 (ENSEASG00005020636) #18	ADM2 (ENSEASG00005027186) #19	MIOX (ENSEASG00005020592) #20	LMF2 (ENSEASG00005020586) #21	NCAPH2 (ENSEASG00005020581) #22	SCO2 (ENSEASG00005024802) #23	TYMP (ENSEASG00005020577) #24	ODF3B (ENSEASG00005020573) #25	CPT1B (ENSEASG00005020564) #27	CHKB (ENSEASG00005020558) #28	MAPK8IP2 (ENSEASG00005020553) #29	ARSA (ENSEASG00005020551) #30	ENSEASG00005020547	SHANK3 (ENSEASG00005020539) #31	ENSEASG00005020536 #32
Chiroptera	ANCESTRAL SPECIES	23	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Megabat	MODERN SPECIES	3637											PPP6R2 (ENSPVAG00000009003) #17	SBF1 (ENSPVAG00000009006) #18	ENSPVAG00000009009	MIOX (ENSPVAG00000009011) #20	LMF2 (ENSPVAG00000009013) #21	NCAPH2 (ENSPVAG00000009015) #22	SCO2 (ENSPVAG00000009016) #23	TYMP (ENSPVAG00000009017) #24	ENSPVAG00000009019 #25	ENSPVAG00000009020	SYCE3 (ENSPVAG00000009021) #26
Microchiroptera	ANCESTRAL SPECIES	8	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00940000156551 #33
Microbat	MODERN SPECIES	1728													ADM2 (ENSMLUG00000028597) #19	MIOX (ENSMLUG00000028982) #20	LMF2 (ENSMLUG00000009998) #21	NCAPH2 (ENSMLUG00000010610) #22	SCO2 (ENSMLUG00000010645) #23	TYMP (ENSMLUG00000010651) #24	ODF3B (ENSMLUG00000028629) #25	ENSMLUG00000005947	SYCE3 (ENSMLUG00000025477) #26	CPT1B (ENSMLUG00000010672) #27	CHKB (ENSMLUG00000026019) #28	MAPK8IP2 (ENSMLUG00000010723) #29	ARSA (ENSMLUG00000010745) #30	ENSMLUG00000010179 #31	ENSMLUG00000014020 #31	ENSMLUG00000010240	ENSMLUG00000014686 #33
Greater horseshoe bat	MODERN SPECIES	1	PANX2 (ENSRFEG00010003700) #8	TRABD (ENSRFEG00010003666) #9	SELENOO (ENSRFEG00010003639) #10	TUBGCP6 (ENSRFEG00010003539) #11	HDAC10 (ENSRFEG00010003445) #12	MAPK12 (ENSRFEG00010003363) #13	MAPK11 (ENSRFEG00010003325) #14	PLXNB2 (ENSRFEG00010003263) #15	DENND6B (ENSRFEG00010003177) #16	ENSRFEG00010003143	PPP6R2 (ENSRFEG00010003065) #17	SBF1 (ENSRFEG00010002872) #18	ADM2 (ENSRFEG00010002808) #19	MIOX (ENSRFEG00010002783) #20	LMF2 (ENSRFEG00010002756) #21	NCAPH2 (ENSRFEG00010002699) #22	SCO2 (ENSRFEG00010002663) #23	TYMP (ENSRFEG00010002639) #24	ENSRFEG00010002538 #25	KLHDC7B (ENSRFEG00010002505)	SYCE3 (ENSRFEG00010002491) #26	CPT1B (ENSRFEG00010002459) #27	CHKB (ENSRFEG00010002398) #28	MAPK8IP2 (ENSRFEG00010002353) #29	ARSA (ENSRFEG00010002317) #30	ENSRFEG00010002297 #31	ENSRFEG00010002282 #31	ENSRFEG00010002270 #31	ENSRFEG00010002234	ENSRFEG00010002199 #33	ENSRFEG00010002155
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Suina	ANCESTRAL SPECIES	21	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Pig	MODERN SPECIES	13	PANX2 (ENSSSCG00000000975) #8	TRABD (ENSSSCG00000000974) #9	SELENOO (ENSSSCG00000000973) #10	TUBGCP6 (ENSSSCG00000000972) #11	HDAC10 (ENSSSCG00000000971) #12	MAPK12 (ENSSSCG00000032693) #13	MAPK11 (ENSSSCG00000033171) #14	PLXNB2 (ENSSSCG00000035733) #15	DENND6B (ENSSSCG00000034272) #16	ENSSSCG00000049725	PPP6R2 (ENSSSCG00000000970) #17	SBF1 (ENSSSCG00000000968) #18	ADM2 (ENSSSCG00000059591) #19	MIOX (ENSSSCG00000023749) #20	LMF2 (ENSSSCG00000000964) #21	NCAPH2 (ENSSSCG00000000965) #22	SCO2 (ENSSSCG00000031420) #23	ODF3B (ENSSSCG00000000967) #25	ENSSSCG00000000960	SYCE3 (ENSSSCG00000000963) #26	CPT1B (ENSSSCG00000022364) #27	CHKB (ENSSSCG00000051883) #28	MAPK8IP2 (ENSSSCG00000031660) #29	ARSA (ENSSSCG00000032428) #30	ENSSSCG00000031925 #31	ENSSSCG00000057823 #31	ACR (ENSSSCG00000021265) #32	ENSSSCG00000034843 #33
Chacoan peccary	MODERN SPECIES	953										ENSCWAG00000019940 #16	ENSCWAG00000019969 #16	ENSCWAG00000020034 #18	ADM2 (ENSCWAG00000020200) #19	ENSCWAG00000020215 #20	LMF2 (ENSCWAG00000020252) #21	NCAPH2 (ENSCWAG00000020269) #22	SCO2 (ENSCWAG00000020292) #23	ODF3B (ENSCWAG00000020298) #25	ENSCWAG00000020329	SYCE3 (ENSCWAG00000020334) #26	CPT1B (ENSCWAG00000020353) #27	CHKB (ENSCWAG00000020388) #28	MAPK8IP2 (ENSCWAG00000020407) #29	ARSA (ENSCWAG00000020433) #30	SHANK3 (ENSCWAG00000020472) #31	ENSCWAG00000020508 #32	ENSCWAG00000020519 #33	OR4A16 (ENSCWAG00000020533)	JMJD4 (ENSCWAG00000020541)	SNAP47 (ENSCWAG00000020551)	PRSS38 (ENSCWAG00000020558)
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Camelidae	ANCESTRAL SPECIES	28	ENSGT00940000162265	ENSGT00390000015442	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Arabian camel	MODERN SPECIES	3	ENSCDRG00005014752 #7	PANX2 (ENSCDRG00005014787) #8	TRABD (ENSCDRG00005014834) #9	ENSCDRG00005014874	SELENOO (ENSCDRG00005014912) #10	ENSCDRG00005014960 #11	HDAC10 (ENSCDRG00005015046) #12	MAPK12 (ENSCDRG00005015256) #13	ENSCDRG00005015364 #14	ENSCDRG00005015393 #14	PLXNB2 (ENSCDRG00005015429) #15	PPP6R2 (ENSCDRG00005015957) #17	ENSCDRG00005016138 #18	ADM2 (ENSCDRG00005016649) #19	MIOX (ENSCDRG00005016670) #20	NCAPH2 (ENSCDRG00005003318) #22	SCO2 (ENSCDRG00005003380) #23	ENSCDRG00005003409 #25	SYCE3 (ENSCDRG00005003616) #26	CPT1B (ENSCDRG00005003652) #27	CHKB (ENSCDRG00005003793) #28	MAPK8IP2 (ENSCDRG00005003825) #29	ARSA (ENSCDRG00005003888) #30	SHANK3 (ENSCDRG00005003969) #31	ACR (ENSCDRG00005004144) #32	ENSCDRG00005004186 #33	ENSCDRG00005004234 #25
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000162777	ENSGT00960000191028
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000162777	ENSGT00960000191028
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000162777	ENSGT00960000191028
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067.h #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000153972.C #8	ENSGT00390000009067.h #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009724.l.y.a.d	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067.h #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009724.l.y.a.d	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Beluga whale	MODERN SPECIES	111	MLC1 (ENSDLEG00000019267)	MOV10L1 (ENSDLEG00000019277) #7	PANX2 (ENSDLEG00000019326) #8	TRABD (ENSDLEG00000019329) #9	SELENOO (ENSDLEG00000019339) #10	TUBGCP6 (ENSDLEG00000019367) #11	HDAC10 (ENSDLEG00000019604) #12	MAPK12 (ENSDLEG00000016996) #13	PLXNB2 (ENSDLEG00000017365) #15	DENND6B (ENSDLEG00000017606) #16	PPP6R2 (ENSDLEG00000017762) #17	SBF1 (ENSDLEG00000017905) #18	ADM2 (ENSDLEG00000017993) #19	MIOX (ENSDLEG00000017996) #20	LMF2 (ENSDLEG00000018051) #21	NCAPH2 (ENSDLEG00000018066) #22	SCO2 (ENSDLEG00000018105) #23	ODF3B (ENSDLEG00000018114) #25	CPT1B (ENSDLEG00000018146) #27	CHKB (ENSDLEG00000018187) #28	MAPK8IP2 (ENSDLEG00000018192) #29	ARSA (ENSDLEG00000018210) #30	SHANK3 (ENSDLEG00000018244) #31	ACR (ENSDLEG00000018484) #32	ENSDLEG00000018519 #33	ENSDLEG00000018551	PRMT2 (ENSDLEG00000018566)	S100B (ENSDLEG00000018617)	DIP2A (ENSDLEG00000018787)	YBEY (ENSDLEG00000020063)	MCM3AP (ENSDLEG00000020070)
Narwhal	MODERN SPECIES	313	MLC1 (ENSMMNG00015015218)	ENSMMNG00015015238 #7	PANX2 (ENSMMNG00015015261) #8	TRABD (ENSMMNG00015015290) #9	SELENOO (ENSMMNG00015015320) #10	TUBGCP6 (ENSMMNG00015015439) #11	HDAC10 (ENSMMNG00015015836) #12	MAPK12 (ENSMMNG00015016156) #13	PLXNB2 (ENSMMNG00015016364) #15	DENND6B (ENSMMNG00015016466) #16	ENSMMNG00015016498	PPP6R2 (ENSMMNG00015016540) #17	ADM2 (ENSMMNG00015017928) #19	MIOX (ENSMMNG00015017956) #20	LMF2 (ENSMMNG00015018004) #21	NCAPH2 (ENSMMNG00015018057) #22	SCO2 (ENSMMNG00015018107) #23	ODF3B (ENSMMNG00015018135) #25	ENSMMNG00015018199	SYCE3 (ENSMMNG00015018276) #26	CPT1B (ENSMMNG00015018342) #27	CHKB (ENSMMNG00015018562) #28	MAPK8IP2 (ENSMMNG00015018611) #29	ARSA (ENSMMNG00015018640) #30	SHANK3 (ENSMMNG00015018687) #31	ENSMMNG00015018715	ENSMMNG00015018749 #33
Vaquita	MODERN SPECIES	1	ENSPSNG00000019023 #7	PANX2 (ENSPSNG00000018969) #8	ENSPSNG00000018926 #9	SELENOO (ENSPSNG00000018843) #10	TUBGCP6 (ENSPSNG00000017416) #11	HDAC10 (ENSPSNG00000017027) #12	MAPK12 (ENSPSNG00000016740) #13	MAPK11 (ENSPSNG00000016662) #14	PLXNB2 (ENSPSNG00000016563) #15	DENND6B (ENSPSNG00000016501) #16	ENSPSNG00000016460	PPP6R2 (ENSPSNG00000016325) #17	ENSPSNG00000015502 #18	ADM2 (ENSPSNG00000015413) #19	MIOX (ENSPSNG00000015092) #20	NCAPH2 (ENSPSNG00000014970) #22	SCO2 (ENSPSNG00000014919) #23	ODF3B (ENSPSNG00000014712) #25	SYCE3 (ENSPSNG00000014396) #26	CPT1B (ENSPSNG00000013798) #27	CHKB (ENSPSNG00000013678) #28	MAPK8IP2 (ENSPSNG00000013607) #29	ARSA (ENSPSNG00000013435) #30	SHANK3 (ENSPSNG00000013189) #31	ACR (ENSPSNG00000012882) #32	ENSPSNG00000012792 #33
Dolphin	MODERN SPECIES	3082												PPP6R2 (ENSTTRG00000013942) #17	SBF1 (ENSTTRG00000013959) #18	MIOX (ENSTTRG00000013971) #20	LMF2 (ENSTTRG00000013973) #21	NCAPH2 (ENSTTRG00000013974) #22	SCO2 (ENSTTRG00000013975) #23	ENSTTRG00000013976 #24	ENSTTRG00000013977 #25	SYCE3 (ENSTTRG00000013979) #26	CPT1B (ENSTTRG00000013980) #27	CHKB (ENSTTRG00000013987) #28	ENSTTRG00000013994	MAPK8IP2 (ENSTTRG00000013997) #29	ARSA (ENSTTRG00000013999) #30	ENSTTRG00000014003 #31	ACR (ENSTTRG00000014004) #32
Sperm whale	MODERN SPECIES	463															LMF2 (ENSPCTG00005018140) #21	NCAPH2 (ENSPCTG00005018090) #22	SCO2 (ENSPCTG00005018076) #23	ODF3B (ENSPCTG00005017959) #25	ENSPCTG00005017900
Blue whale	MODERN SPECIES	1	MLC1 (ENSBMSG00010019317)	ENSBMSG00010019351 #7	PANX2 (ENSBMSG00010019374) #8	TRABD (ENSBMSG00010019398) #9	SELENOO (ENSBMSG00010019434) #10	TUBGCP6 (ENSBMSG00010019546) #11	HDAC10 (ENSBMSG00010019871) #12	MAPK12 (ENSBMSG00010020111) #13	MAPK11 (ENSBMSG00010020151) #14	PLXNB2 (ENSBMSG00010020234) #15	DENND6B (ENSBMSG00010006343) #16	ENSBMSG00010006373 #17	SBF1 (ENSBMSG00010006438) #18	ADM2 (ENSBMSG00010006557) #19	MIOX (ENSBMSG00010006569) #20	NCAPH2 (ENSBMSG00010006615) #22	SCO2 (ENSBMSG00010006648) #23	ODF3B (ENSBMSG00010006666) #25	KLHDC7B (ENSBMSG00010006691)	SYCE3 (ENSBMSG00010006700) #26	CPT1B (ENSBMSG00010006727) #27	CHKB (ENSBMSG00010006761) #28	MAPK8IP2 (ENSBMSG00010006794) #29	ARSA (ENSBMSG00010006818) #30	SHANK3 (ENSBMSG00010006839) #31	ACR (ENSBMSG00010006858) #32	ENSBMSG00010006878 #33
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00960000191028	ENSGT00940000156551 #33
Yarkand deer	MODERN SPECIES	14	IL17REL (ENSCHYG00000021215)	TTLL8 (ENSCHYG00000021382)	MLC1 (ENSCHYG00000021858)	MOV10L1 (ENSCHYG00000021975) #7	SELENOO (ENSCHYG00000022131) #10	TUBGCP6 (ENSCHYG00000022232) #11	HDAC10 (ENSCHYG00000022450) #12	MAPK12 (ENSCHYG00000023061) #13	MAPK11 (ENSCHYG00000023279) #14	PLXNB2 (ENSCHYG00000023351) #15	PPP6R2 (ENSCHYG00000023531) #17	ENSCHYG00000023600	ADM2 (ENSCHYG00000025454) #19	MIOX (ENSCHYG00000025475) #20	LMF2 (ENSCHYG00000025535) #21	NCAPH2 (ENSCHYG00000025580) #22	SCO2 (ENSCHYG00000025623) #23	ODF3B (ENSCHYG00000025644) #25	ENSCHYG00000025728	SYCE3 (ENSCHYG00000025730) #26	CPT1B (ENSCHYG00000025748) #27	CHKB (ENSCHYG00000025786) #28	MAPK8IP2 (ENSCHYG00000025831) #29	ARSA (ENSCHYG00000025866) #30	ENSCHYG00000025892 #31	ENSCHYG00000025904 #31	ACR (ENSCHYG00000025909) #32	ENSCHYG00000025922	ENSCHYG00000025945 #33
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00960000191028	ENSGT00940000156551 #33
Siberian musk deer	MODERN SPECIES	235													ADM2 (ENSMMSG00000002842) #19	MIOX (ENSMMSG00000002809) #20	LMF2 (ENSMMSG00000002760) #21	NCAPH2 (ENSMMSG00000002722) #22	SCO2 (ENSMMSG00000002706) #23	ODF3B (ENSMMSG00000002632) #25	ENSMMSG00000002605	SYCE3 (ENSMMSG00000002596) #26	CPT1B (ENSMMSG00000002548) #27	CHKB (ENSMMSG00000002517) #28	MAPK8IP2 (ENSMMSG00000002426) #29	ARSA (ENSMMSG00000002396) #30	ENSMMSG00000002374 #31	ENSMMSG00000002347 #31	ENSMMSG00000002275	ENSMMSG00000002252	ENSMMSG00000002235 #33	ENSMMSG00000002223
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00960000191028	ENSGT00940000156551 #33
Bovinae	ANCESTRAL SPECIES	10	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00960000191028	ENSGT00940000156551 #33
Bos	ANCESTRAL SPECIES	2	ENSGT00940000155320.p.b	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00960000191028	ENSGT00940000156551 #33
Bos_b	ANCESTRAL SPECIES	30	ENSGT00940000155320.p.b	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00960000191028	ENSGT00940000156551 #33
Cow	MODERN SPECIES	24	PANX2 (ENSBTAG00000009297) #8	TRABD (ENSBTAG00000001931) #9	SELENOO (ENSBTAG00000000647) #10	TUBGCP6 (ENSBTAG00000000650) #11	HDAC10 (ENSBTAG00000011000) #12	MAPK12 (ENSBTAG00000019574) #13	MAPK11 (ENSBTAG00000030182) #14	PLXNB2 (ENSBTAG00000014966) #15	DENND6B (ENSBTAG00000024756) #16	PPP6R2 (ENSBTAG00000018660) #17	SBF1 (ENSBTAG00000021337) #18	ENSBTAG00000051406	ADM2 (ENSBTAG00000054072) #19	MIOX (ENSBTAG00000002559) #20	LMF2 (ENSBTAG00000017925) #21	NCAPH2 (ENSBTAG00000012607) #22	SCO2 (ENSBTAG00000012609) #23	ODF3B (ENSBTAG00000026467) #25	KLHDC7B (ENSBTAG00000046800)	SYCE3 (ENSBTAG00000046298) #26	CPT1B (ENSBTAG00000016048) #27	CHKB (ENSBTAG00000016050) #28	MAPK8IP2 (ENSBTAG00000030179) #29	ARSA (ENSBTAG00000016053) #30	SHANK3 (ENSBTAG00000030180) #31	ACR (ENSBTAG00000010182)	ENSBTAG00000053921	RABL2B (ENSBTAG00000004876) #33
Hybrid Bos Indicus	MODERN SPECIES	24	PANX2 (ENSBIXG00005009391) #8	TRABD (ENSBIXG00005009416) #9	SELENOO (ENSBIXG00005009462) #10	TUBGCP6 (ENSBIXG00005009520) #11	HDAC10 (ENSBIXG00005009606) #12	MAPK12 (ENSBIXG00005009635) #13	MAPK11 (ENSBIXG00005009677) #14	PLXNB2 (ENSBIXG00005000556) #15	DENND6B (ENSBIXG00005009775) #16	PPP6R2 (ENSBIXG00005006198) #17	ENSBIXG00005006770	SBF1 (ENSBIXG00005005580) #18	ADM2 (ENSBIXG00005009961) #19	MIOX (ENSBIXG00005009982) #20	LMF2 (ENSBIXG00005000757) #21	NCAPH2 (ENSBIXG00005007423) #22	ENSBIXG00005010136 #25	ENSBIXG00005010154	CPT1B (ENSBIXG00005000825) #27	CHKB (ENSBIXG00005010302) #28	MAPK8IP2 (ENSBIXG00005010330) #29	ARSA (ENSBIXG00005000857) #30	SHANK3 (ENSBIXG00005010413) #31	ENSBIXG00005010433	ENSBIXG00005000736	ENSBIXG00005010516 #33
Bos_a	ANCESTRAL SPECIES	24	ENSGT00940000155320.p.b	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00960000191028	ENSGT00940000156551 #33
Domestic yak	MODERN SPECIES	24	ENSBGRG00000002468 #7	ENSBGRG00000002477	PANX2 (ENSBGRG00000002485) #8	TRABD (ENSBGRG00000002502) #9	SELENOO (ENSBGRG00000002527) #10	HDAC10 (ENSBGRG00000002796) #12	MAPK12 (ENSBGRG00000003265) #13	MAPK11 (ENSBGRG00000003319) #14	PLXNB2 (ENSBGRG00000003331) #15	DENND6B (ENSBGRG00000003411) #16	PPP6R2 (ENSBGRG00000003493) #17	ENSBGRG00000003552 #18	ADM2 (ENSBGRG00000004240) #19	MIOX (ENSBGRG00000004286) #20	LMF2 (ENSBGRG00000004503) #21	NCAPH2 (ENSBGRG00000004597) #22	SCO2 (ENSBGRG00000004735) #23	ENSBGRG00000004764	ENSBGRG00000004842	CPT1B (ENSBGRG00000004887) #27	CHKB (ENSBGRG00000005249) #28	MAPK8IP2 (ENSBGRG00000005404) #29	ARSA (ENSBGRG00000005440) #30	ENSBGRG00000006015	ENSBGRG00000006028	ENSBGRG00000006059 #33
Wild yak	MODERN SPECIES	1527											PPP6R2 (ENSBMUG00000013215) #17	SBF1 (ENSBMUG00000015449) #18	ADM2 (ENSBMUG00000016550) #19	MIOX (ENSBMUG00000016556) #20	LMF2 (ENSBMUG00000016580) #21	NCAPH2 (ENSBMUG00000016597) #22	SCO2 (ENSBMUG00000016618) #23	ENSBMUG00000016636 #25	ENSBMUG00000016647	SYCE3 (ENSBMUG00000016658) #26	CPT1B (ENSBMUG00000016704) #27	CHKB (ENSBMUG00000016717) #28	MAPK8IP2 (ENSBMUG00000016752) #29	ARSA (ENSBMUG00000016802) #30	SHANK3 (ENSBMUG00000016867) #31	ENSBMUG00000016910	ENSBMUG00000016926	ENSBMUG00000016951 #33
American bison	MODERN SPECIES	1778												ENSBBBG00000005972	MIOX (ENSBBBG00000022718) #20	LMF2 (ENSBBBG00000022742) #21	ENSBBBG00000007241	ENSBBBG00000022760 #22	SCO2 (ENSBBBG00000022766) #23	ENSBBBG00000022774 #25	SYCE3 (ENSBBBG00000022781) #26	CPT1B (ENSBBBG00000022930) #27	CHKB (ENSBBBG00000022957) #28	ENSBBBG00000022963 #29
Caprinae	ANCESTRAL SPECIES		ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263.t #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777	ENSGT00940000156551 #33	ENSGT00950000184876	ENSGT00940000160189	ENSGT00940000174032	ENSGT00940000157785
Rambouillet Sheep	MODERN SPECIES	18	CFAP97 (ENSOARG00020014262)	SLC25A4 (ENSOARG00020014234)	HELT (ENSOARG00020014117)	ACSL1 (ENSOARG00020013348)	PRIMPOL (ENSOARG00020013241)	CASP3 (ENSOARG00020013157)	IRF2 (ENSOARG00020013042)	ENPP6 (ENSOARG00020012535)	STOX2 (ENSOARG00020012344)	TRAPPC11 (ENSOARG00020011964)	RWDD4 (ENSOARG00020011673)	ENSOARG00020011629	ENSOARG00020011624	ING2 (ENSOARG00020025427)	CDKN2AIP (ENSOARG00020025421)	ENSOARG00020025415 #22	ENSOARG00020025411	ENSOARG00020025406	WWC2 (ENSOARG00020025347)	DCTD (ENSOARG00020025328)	TENM3 (ENSOARG00020025305)	AGA (ENSOARG00020025240)	NEIL3 (ENSOARG00020025196)	VEGFC (ENSOARG00020025167)	SPCS3 (ENSOARG00020025151)	ASB5 (ENSOARG00020025125)	SPATA4 (ENSOARG00020025097)	WDR17 (ENSOARG00020024883)	GPM6A (ENSOARG00020024811)	ENSOARG00020024792	ENSOARG00020024782
Goat	MODERN SPECIES	24	MOV10L1 (ENSCHIG00000018369) #7	PANX2 (ENSCHIG00000013892) #8	TRABD (ENSCHIG00000017582) #9	SELENOO (ENSCHIG00000021219) #10	TUBGCP6 (ENSCHIG00000021357) #11	HDAC10 (ENSCHIG00000017017) #12	MAPK12 (ENSCHIG00000016446) #13	MAPK11 (ENSCHIG00000018583) #14	ENSCHIG00000014299 #15	PPP6R2 (ENSCHIG00000015410) #17	DENND6B (ENSCHIG00000019757) #16	ENSCHIG00000016085 #18	ADM2 (ENSCHIG00000025359) #19	MIOX (ENSCHIG00000021543) #20	LMF2 (ENSCHIG00000018273) #21	NCAPH2 (ENSCHIG00000009831) #22	ODF3B (ENSCHIG00000018561) #25	ENSCHIG00000014214	SYCE3 (ENSCHIG00000021321) #26	CPT1B (ENSCHIG00000023593) #27	CHKB (ENSCHIG00000009286) #28	MAPK8IP2 (ENSCHIG00000008393) #29	ARSA (ENSCHIG00000013679) #30	SHANK3 (ENSCHIG00000017950) #31	ENSCHIG00000023128	ENSCHIG00000000591 #33
Atlantogenata	ANCESTRAL SPECIES	147												ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777
Afrotheria	ANCESTRAL SPECIES	190												ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30
Afrotheria_a	ANCESTRAL SPECIES	191												ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30
Elephant	MODERN SPECIES	219												PPP6R2 (ENSLAFG00000000025) #17	SBF1 (ENSLAFG00000027298) #18	MIOX (ENSLAFG00000030567) #20	LMF2 (ENSLAFG00000004239) #21	NCAPH2 (ENSLAFG00000027516) #22	TYMP (ENSLAFG00000029114) #24	ODF3B (ENSLAFG00000020850) #25	ENSLAFG00000026031	SYCE3 (ENSLAFG00000022013) #26	CPT1B (ENSLAFG00000014537) #27	CHKB (ENSLAFG00000013569) #28	MAPK8IP2 (ENSLAFG00000017962) #29	ENSLAFG00000031662 #30	ENSLAFG00000028038 ##31
Hyrax	MODERN SPECIES	203														ENSPCAG00000001174 #20	LMF2 (ENSPCAG00000001213) #21	NCAPH2 (ENSPCAG00000001297) #22	TYMP (ENSPCAG00000001405) #24	ENSPCAG00000001456 #25
Xenarthra	ANCESTRAL SPECIES	601												ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000163480	ENSGT00390000009978 #26
Armadillo	MODERN SPECIES	1722											PPP6R2 (ENSDNOG00000005094) #17	SBF1 (ENSDNOG00000038873) #18	ENSDNOG00000011955 #20	ENSDNOG00000047232 #20	LMF2 (ENSDNOG00000043653) #21	NCAPH2 (ENSDNOG00000015743) #22	ENSDNOG00000031396 #24	KLHDC7B (ENSDNOG00000044024)	SYCE3 (ENSDNOG00000025822) #26	VIP (ENSDNOG00000038917)	MYCT1 (ENSDNOG00000035399)	ENSDNOG00000048000	ENSDNOG00000032987	ENSDNOG00000033660	ESR1 (ENSDNOG00000038208)	CCDC170 (ENSDNOG00000002029)	ARMT1 (ENSDNOG00000019662)	RMND1 (ENSDNOG00000001802)	ENSDNOG00000030670	ZBTB2 (ENSDNOG00000047729)	AKAP12 (ENSDNOG00000036531)
Marsupialia	ANCESTRAL SPECIES	11	ENSGT00940000165434	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.a ##31	ENSGT00940000162430 #32	ENSGT00390000006791	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00390000011355
Marsupialia_b	ANCESTRAL SPECIES	13	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777.c	ENSGT00390000006791	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00390000011355
Diprotodontia	ANCESTRAL SPECIES	8	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777.c	ENSGT00390000006791	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00390000011355
Diprotodontia_a	ANCESTRAL SPECIES	8	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00940000164836	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480	ENSGT00390000009978 #26	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00940000160461 #29	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000162777.c	ENSGT00390000006791	ENSGT00950000183194.b	ENSGT00950000183194.a.a	ENSGT00390000011355
koala	MODERN SPECIES	13	ENSPCIG00000011125	PANX2 (ENSPCIG00000035129) #8	TRABD (ENSPCIG00000034313) #9	ENSPCIG00000033724	SELENOO (ENSPCIG00000016158) #10	TUBGCP6 (ENSPCIG00000016151) #11	HDAC10 (ENSPCIG00000016148) #12	MAPK12 (ENSPCIG00000035075) #13	MAPK11 (ENSPCIG00000034016) #14	PLXNB2 (ENSPCIG00000016132) #15	DENND6B (ENSPCIG00000016129) #16	PPP6R2 (ENSPCIG00000026109) #17	SBF1 (ENSPCIG00000026429) #18	MIOX (ENSPCIG00000026432) #20	LMF2 (ENSPCIG00000026433) #21	NCAPH2 (ENSPCIG00000026435) #22	SCO2 (ENSPCIG00000026442) #23	TYMP (ENSPCIG00000026444) #24	ENSPCIG00000026447	SYCE3 (ENSPCIG00000034717) #26	CPT1B (ENSPCIG00000008276) #27	CHKB (ENSPCIG00000023489) #28	MAPK8IP2 (ENSPCIG00000019525) #29	ARSA (ENSPCIG00000002293) #30	SHANK3 (ENSPCIG00000002325) #31	ENSPCIG00000031773	SHISAL1 (ENSPCIG00000007811)	ENSPCIG00000007814	PARVB (ENSPCIG00000015090)	SAMM50 (ENSPCIG00000018526)	PNPLA3 (ENSPCIG00000031779)
Common wonbat	MODERN SPECIES	657	TRABD (ENSVURG00010001133) #9	ENSVURG00010001194	SELENOO (ENSVURG00010001210) #10	TUBGCP6 (ENSVURG00010001278) #11	HDAC10 (ENSVURG00010001834) #12	MAPK12 (ENSVURG00010001860) #13	MAPK11 (ENSVURG00010001892) #14	PLXNB2 (ENSVURG00010001916) #15	DENND6B (ENSVURG00010002044) #16	PPP6R2 (ENSVURG00010002499) #17	SBF1 (ENSVURG00010002747) #18	ENSVURG00010005401	ENSVURG00010005406 #19	MIOX (ENSVURG00010005414) #20	LMF2 (ENSVURG00010005448) #21	NCAPH2 (ENSVURG00010005480) #22	SCO2 (ENSVURG00010005520) #23	TYMP (ENSVURG00010005533) #24	ODF3B (ENSVURG00010005554) #25	ENSVURG00010005575	SYCE3 (ENSVURG00010005579) #26	CPT1B (ENSVURG00010005593) #27	CHKB (ENSVURG00010005933) #28	ENSVURG00010005957 #29	ARSA (ENSVURG00010005970) #30	ENSVURG00010006036 ##31	ENSVURG00010006167 #32	SHISAL1 (ENSVURG00010006200)	PARVG (ENSVURG00010006206)	PARVB (ENSVURG00010006255)	SAMM50 (ENSVURG00010006929)
Wallaby	MODERN SPECIES	886															LMF2 (ENSMEUG00000004669) #21	NCAPH2 (ENSMEUG00000004692) #22	SCO2 (ENSMEUG00000004731) #23	TYMP (ENSMEUG00000004735) #24
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000023510	PANX2 (ENSSHAG00000021304) #8	TRABD (ENSSHAG00000008744) #9	TUBGCP6 (ENSSHAG00000009233) #11	ENSSHAG00000031282 #12	MAPK12 (ENSSHAG00000009604) #13	ENSSHAG00000009776 #14	ENSSHAG00000029547 #14	PLXNB2 (ENSSHAG00000010107) #15	DENND6B (ENSSHAG00000010749) #16	PPP6R2 (ENSSHAG00000011257) #17	SBF1 (ENSSHAG00000000303) #18	ENSSHAG00000021406 #19	MIOX (ENSSHAG00000004066) #20	LMF2 (ENSSHAG00000004843) #21	NCAPH2 (ENSSHAG00000000189) #22	TYMP (ENSSHAG00000001515) #24	ENSSHAG00000030059 #25	ENSSHAG00000022464 #26	CPT1B (ENSSHAG00000003537) #27	MAPK8IP2 (ENSSHAG00000026548) #29	ARSA (ENSSHAG00000005296) #30	ENSSHAG00000025292 #31	ENSSHAG00000006747	ENSSHAG00000028619	ENSSHAG00000000935	PARVG (ENSSHAG00000000574)	PARVB (ENSSHAG00000003780)	SAMM50 (ENSSHAG00000001501)	PNPLA3 (ENSSHAG00000002603)	ENSSHAG00000004007
Platypus	MODERN SPECIES	5	ENSOANG00000030717	ENSOANG00000043233	SULT4A1 (ENSOANG00000042734)	ENSOANG00000028635	ENSOANG00000008782	SCUBE1 (ENSOANG00000045735)	TTLL12 (ENSOANG00000021608)	ENSOANG00000044048	MCAT (ENSOANG00000015880)	TTLL1 (ENSOANG00000015127)	PACSIN2 (ENSOANG00000046272)	ARFGAP3 (ENSOANG00000005849)	A4GALT (ENSOANG00000008967)	ENSOANG00000038441	CYB5R3 (ENSOANG00000038457)	ENSOANG00000042312 #22	LMF2 (ENSOANG00000038368) #21	SCO2 (ENSOANG00000045997) #23	TYMP (ENSOANG00000028714) #24	ODF3B (ENSOANG00000036484) #25	ENSOANG00000046539	ENSOANG00000035177 #26	CPT1B (ENSOANG00000030397) #27	ENSOANG00000049088 #28	MAPK8IP2 (ENSOANG00000046713) #29	ENSOANG00000047870 #31	ENSOANG00000047431	ENSOANG00000043156
Sauria	ANCESTRAL SPECIES	4	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00950000183157.b	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00940000175182	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00940000156265.w	ENSGT00940000165068	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000157610 #30	ENSGT00940000162777.b	ENSGT00940000162777.a	ENSGT00940000162430 #32
Lepidosauria	ANCESTRAL SPECIES	95	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000157610 #30	ENSGT00940000162777.b	ENSGT00940000162777.a	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000160284	ENSGT01100000263570.B.c.b	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000009250 #24	ENSGT00940000161995.s #25
Episquamata	ANCESTRAL SPECIES	3	ENSGT00940000157610 #30	ENSGT00940000162777.b	ENSGT00940000162777.a.k.b	ENSGT00940000162430.a.b #32	ENSGT00940000162777.a.k.a.a.a	ENSGT00960000189403.b	ENSGT00940000162430.a.a #32	ENSGT00940000162777.a.l	ENSGT00940000156551 #33	ENSGT00940000173712	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000003224.B	ENSGT00390000013208	ENSGT00940000153588.a.b	ENSGT00940000159122	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00940000159484	ENSGT00940000157206	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000004852.a.b
Toxicofera	DUPLICATION
Toxicofera	ANCESTRAL SPECIES	197															ENSGT01020000230616	ENSGT00390000014443.g #22
Elapidae	ANCESTRAL SPECIES																	ENSGT00390000014443.g #22
Elapidae_a	ANCESTRAL SPECIES																	ENSGT00390000014443.g #22
Blue-lipped sea krait	MODERN SPECIES	5636																ENSLLTG00000009473 #22
Lizard	MODERN SPECIES	100															ENSACAG00000039551	ENSACAG00000013108 #22
Toxicofera	ANCESTRAL SPECIES	163																ENSGT00390000014443.h #22	ENSGT00390000004323.a #23
Elapidae	ANCESTRAL SPECIES	149																ENSGT00390000014443.h #22	ENSGT00390000004323.a #23
Elapidae_a	ANCESTRAL SPECIES	300																ENSGT00390000014443.h #22	ENSGT00390000004323.a #23
Blue-lipped sea krait	MODERN SPECIES	5635																ENSLLTG00000009438 #22	SCO2 (ENSLLTG00000009456) #23
Laterata	ANCESTRAL SPECIES	55	ENSGT00940000162777.b	ENSGT00940000162777.a.k.b	ENSGT00940000162430.a.b #32	ENSGT00940000162777.a.k.a.a.a	ENSGT00960000189403.b	ENSGT00940000162430.a.a #32	ENSGT00940000162430.b #32	ENSGT00940000156551 #33	ENSGT00960000189467	ENSGT01100000263561.A.j.a.b	ENSGT00940000158997	ENSGT00730000111007.a.a	ENSGT00940000164333	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23
Argentine black and white tegu	MODERN SPECIES	6											HCLS1 (ENSSMRG00000013636)	GOLGB1 (ENSSMRG00000013635)	ENSSMRG00000013634	MIOX (ENSSMRG00000013633) #20	LMF2 (ENSSMRG00000013630) #21	NCAPH2 (ENSSMRG00000013626) #22	SCO2 (ENSSMRG00000013625) #23	ENSSMRG00000013624	ENSSMRG00000013623 #25	TYMP (ENSSMRG00000013622) #24	ENSSMRG00000013585 #25	ENSSMRG00000013584	ENSSMRG00000013583	ENSSMRG00000013581	ENSSMRG00000013580	ENSSMRG00000013578	GARIN1B (ENSSMRG00000013577)	ENSSMRG00000013576	ENSSMRG00000013575	FLNC (ENSSMRG00000013567)	ENSSMRG00000013564
Common wall lizard	MODERN SPECIES	1	ENSPMRG00000014549	ENSPMRG00000014557 #33	ENSPMRG00000014562	ENSPMRG00000014566	ENSPMRG00000014571	ENSPMRG00000014574	ENSPMRG00000014578	ENSPMRG00000014585	ENSPMRG00000014595	HCLS1 (ENSPMRG00000014602)	GOLGB1 (ENSPMRG00000014613)	ENSPMRG00000014625	ENSPMRG00000014631	MIOX (ENSPMRG00000014646) #20	LMF2 (ENSPMRG00000014663) #21	NCAPH2 (ENSPMRG00000014678) #22	SCO2 (ENSPMRG00000014699) #23	ENSPMRG00000014707	ENSPMRG00000012760	ENSPMRG00000012771	GCC1 (ENSPMRG00000012775)	ENSPMRG00000012783	FSCN3 (ENSPMRG00000012785)	PAX4 (ENSPMRG00000012791)	SND1 (ENSPMRG00000012798)	LRRC4 (ENSPMRG00000012808)	ENSPMRG00000012811	LEP (ENSPMRG00000012815)	RBM28 (ENSPMRG00000012821)	PRRT4 (ENSPMRG00000012835)	ENSPMRG00000012838
tuatara	MODERN SPECIES	437									ENSSPUG00000006710	ENSSPUG00000006718	ENSSPUG00000006730	ENSSPUG00000006737	ENSSPUG00000006751	LMF2 (ENSSPUG00000006837) #21	MIOX (ENSSPUG00000006856) #20	NCAPH2 (ENSSPUG00000006882) #22	ENSSPUG00000006950	TYMP (ENSSPUG00000006955) #24	ODF3B (ENSSPUG00000006965) #25	CALU (ENSSPUG00000006976)	OPN1SW (ENSSPUG00000006986)	ENSSPUG00000006999	FLNC (ENSSPUG00000007046)	ATP6V1F (ENSSPUG00000007261)	ATP6V1FNB (ENSSPUG00000007269)	KCP (ENSSPUG00000007280)
Archelosauria	ANCESTRAL SPECIES	3	ENSGT00550000074976	ENSGT00390000011772	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00950000183157.b	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00940000156265.w	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000157610 #30	ENSGT00940000162777.b	ENSGT00940000162777.a	ENSGT00940000162430 #32	ENSGT00940000156551 #33
Cryptodira	ANCESTRAL SPECIES	58	ENSGT00550000074976	ENSGT00390000011772	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00950000183157.b	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24
Testudinoidea	ANCESTRAL SPECIES	47	ENSGT00550000074976	ENSGT00390000011772	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00950000183157.b	ENSGT00940000156878.h	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24
Testudinidae	ANCESTRAL SPECIES	101							ENSGT00940000156878.g	ENSGT00940000153772.A	ENSGT00940000181929	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT01030000234722.a.c.b.b
Goode s thornscrub tortoise	MODERN SPECIES		RBM28 (ENSGEVG00005000769)	LEP (ENSGEVG00005000745)	LRRC4 (ENSGEVG00005000731)	SND1 (ENSGEVG00005000711)	PAX4 (ENSGEVG00005000690)	FSCN3 (ENSGEVG00005000677)	ARF5 (ENSGEVG00005000664)	GCC1 (ENSGEVG00005000650)	ENSGEVG00005000636	DENND6B (ENSGEVG00005000593) #16	ENSGEVG00005000571	PPP6R2 (ENSGEVG00005000516) #17	SBF1 (ENSGEVG00005000266) #18	MIOX (ENSGEVG00005000161) #20	LMF2 (ENSGEVG00005000119) #21	NCAPH2 (ENSGEVG00005000046) #22	SCO2 (ENSGEVG00005000028) #23	TYMP (ENSGEVG00005000021) #24	ENSGEVG00005000016	ENSGEVG00005000006	ENSGEVG00005012402	ENSGEVG00005012380	ENSGEVG00005012346	ENSGEVG00005012331	ENSGEVG00005012288	ENSGEVG00005012107 #25	ENSGEVG00005012039	ENSGEVG00005011824 #25	ENSGEVG00005011748 #25	ENSGEVG00005011660	ENSGEVG00005011590
Abingdon island giant tortoise	MODERN SPECIES	838														MIOX (ENSCABG00000021294) #20	LMF2 (ENSCABG00000021295) #21	NCAPH2 (ENSCABG00000021300) #22	SCO2 (ENSCABG00000021302) #23	ENSCABG00000021303 #24	ENSCABG00000021304
Emydidae	ANCESTRAL SPECIES	66	ENSGT00390000011772	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00950000183157.b	ENSGT00940000156878.h	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000153568.B.b.a	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24
Three-toed box turtle	MODERN SPECIES	105	LEP (ENSTMTG00000013111)	LRRC4 (ENSTMTG00000013132)	SND1 (ENSTMTG00000013183)	ENSTMTG00000013612	FSCN3 (ENSTMTG00000013625)	ENSTMTG00000013644	GCC1 (ENSTMTG00000013653)	ENSTMTG00000013665	DENND6B (ENSTMTG00000013706) #16	PPP6R2 (ENSTMTG00000013966) #17	ENSTMTG00000014010	SBF1 (ENSTMTG00000014506) #18	ADM2 (ENSTMTG00000020529) #19	MIOX (ENSTMTG00000020536) #20	LMF2 (ENSTMTG00000020552) #21	NCAPH2 (ENSTMTG00000020560) #22	SCO2 (ENSTMTG00000020571) #23
painted turtle	MODERN SPECIES	886	SND1 (ENSCPBG00000018094)	LRRC4 (ENSCPBG00000018095)	PAX4 (ENSCPBG00000018097)	FSCN3 (ENSCPBG00000018099)	ENSCPBG00000018100	GCC1 (ENSCPBG00000018101)	ENSCPBG00000018102	DENND6B (ENSCPBG00000018106) #16	PPP6R2 (ENSCPBG00000018111) #17	ENSCPBG00000018115	ENSCPBG00000018116	SBF1 (ENSCPBG00000018127) #18	ADM2 (ENSCPBG00000018130) #19	MIOX (ENSCPBG00000018131) #20	LMF2 (ENSCPBG00000018132) #21	NCAPH2 (ENSCPBG00000018133) #22	SCO2 (ENSCPBG00000018134) #23	TYMP (ENSCPBG00000018135) #24	ENSCPBG00000018136
Chinese turtle	MODERN SPECIES	1597														ENSPSIG00000002853	LMF2 (ENSPSIG00000002861) #21	NCAPH2 (ENSPSIG00000002931) #22	SCO2 (ENSPSIG00000002948) #23
Archosauria	ANCESTRAL SPECIES	4					ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000165441	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000157610 #30	ENSGT00940000162777.a	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000160284	ENSGT01100000263561.A	ENSGT00940000158997
Aves	ANCESTRAL SPECIES	1					ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000165441	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000157610 #30	ENSGT00940000162777.a	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000160284	ENSGT01100000263561.A	ENSGT00940000158997
Neognathae	ANCESTRAL SPECIES	3	ENSGT00390000013208	ENSGT00940000165748	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000162777.a	ENSGT00940000157610 #30	ENSGT00960000189403	ENSGT00940000162430 #32	ENSGT00940000156551 #33	ENSGT00940000160284
Neognathae_b	ANCESTRAL SPECIES	2	ENSGT00940000153588.a.b	ENSGT00390000013208	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00940000181929	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000157610 #30	ENSGT00960000189403	ENSGT00940000162430 #32	ENSGT00940000162777.a	ENSGT00940000156551 #33	ENSGT00940000160284
Neognathae_c	ANCESTRAL SPECIES		ENSGT00940000159926	ENSGT01010000222360.E.c	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28	ENSGT00390000003014	ENSGT01020000230860	ENSGT00940000160461 #29	ENSGT00940000153561.b.b #31	ENSGT00940000157610 #30	ENSGT00940000162777.a	ENSGT00940000156551 #33	ENSGT00940000160284	ENSGT01100000263570.B
Golden eagle	MODERN SPECIES	21	ATP6V1F (ENSACCG00020001014)	ENSACCG00020000999	ENSACCG00020000984	LRRC4 (ENSACCG00020000969)	ENSACCG00020000929	SND1 (ENSACCG00020000852)	PAX4 (ENSACCG00020000810)	ENSACCG00020000771	GCC1 (ENSACCG00020000751)	DENND6B (ENSACCG00020000731) #16	PPP6R2 (ENSACCG00020000657) #17	SBF1 (ENSACCG00020000513) #18	ADM2 (ENSACCG00020000363) #19	MIOX (ENSACCG00020000341) #20	LMF2 (ENSACCG00020000309) #21	NCAPH2 (ENSACCG00020004365) #22	TYMP (ENSACCG00020004344) #24	ODF3B (ENSACCG00020004319) #25	ENSACCG00020004312	ENSACCG00020004296	ENSACCG00020004284	CPT1B (ENSACCG00020004256) #27	CHKB (ENSACCG00020004186) #28	ENSACCG00020004114	ENSACCG00020004106	MAPK8IP2 (ENSACCG00020004094) #29	SHANK3 (ENSACCG00020004002) #31	ENSACCG00020003848	ENSACCG00020003822	ARSA (ENSACCG00020003814) #30	ENSACCG00020003789
Kakapo	MODERN SPECIES	32			ENSSHBG00005009575	LRRC4 (ENSSHBG00005009570)	SND1 (ENSSHBG00005009563)	PAX4 (ENSSHBG00005009543)	ARF5 (ENSSHBG00005009534)	GCC1 (ENSSHBG00005009527)	DENND6B (ENSSHBG00005009514) #16	PPP6R2 (ENSSHBG00005009489) #17	SBF1 (ENSSHBG00005000909) #18	ENSSHBG00005000878	ADM2 (ENSSHBG00005000872) #19	MIOX (ENSSHBG00005014097) #20	LMF2 (ENSSHBG00005014081) #21	NCAPH2 (ENSSHBG00005014062) #22	SCO2 (ENSSHBG00005014057) #23	ODF3B (ENSSHBG00005014046) #25	CHKB (ENSSHBG00005014040) #28	CPT1B (ENSSHBG00005014019) #27	ENSSHBG00005013987	ENSSHBG00005013972	ENSSHBG00005013940	SHANK3 (ENSSHBG00005013916) #31	MAPK8IP2 (ENSSHBG00005013898) #29	ENSSHBG00005013888	ARSA (ENSSHBG00005013876) #30	ENSSHBG00005013872 #33	NME6 (ENSSHBG00005013866)	ENSSHBG00005013857	HCLS1 (ENSSHBG00005013832)
Passeriformes	ANCESTRAL SPECIES	59								ENSGT00940000153772.A	ENSGT00940000181929	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000175182	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28
Passeriformes_d	ANCESTRAL SPECIES	54								ENSGT00940000153772.A	ENSGT00940000181929	ENSGT00390000005529.b #16	ENSGT00390000009899.b.d #17	ENSGT00940000155263 #18	ENSGT00940000175182	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28
Passeriformes_g	ANCESTRAL SPECIES	4	ENSGT00990000204718	ENSGT00400000022095.a	ENSGT00950000182981.b.f.a.f	ENSGT00940000157206	ENSGT00940000159484	ENSGT00940000157610.m #30	ENSGT00940000162777.a.b.b.b	ENSGT00940000153772.A	ENSGT00940000181929	ENSGT00390000005529.b #16	ENSGT00390000009899.b.d #17	ENSGT00940000155263 #18	ENSGT00940000175182	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28
Medium ground finch	MODERN SPECIES	378													ENSGFOG00000010331	PPP6R2 (ENSGFOG00000010390) #17	SBF1 (ENSGFOG00000010544) #18	NCAPH2 (ENSGFOG00000011970) #22
Passeroidea	ANCESTRAL SPECIES	59	ENSGT00990000204718	ENSGT00400000022095.a	ENSGT00950000182981.b.f.a.f	ENSGT00940000157206	ENSGT00940000159484	ENSGT00940000157610.m #30	ENSGT00940000162777.a.b.b.b	ENSGT00940000153772.A	ENSGT00940000181929	ENSGT00390000005529.b #16	ENSGT00390000009899.b.d #17	ENSGT00940000155263 #18	ENSGT00940000175182	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT01030000234937.b	ENSGT01060000248595.b.a.a #27	ENSGT00950000182939.a.b.a #28
Zebra finch	MODERN SPECIES	72	ENSTGUG00000016228 #16	ENSTGUG00000016248 #17	ENSTGUG00000022109	ENSTGUG00000025539	ENSTGUG00000028543 #18	ENSTGUG00000028280	MIOX (ENSTGUG00000020556) #20	LMF2 (ENSTGUG00000016093) #21	SCO2 (ENSTGUG00000028468) #23	TYMP (ENSTGUG00000029600) #24	ENSTGUG00000023355	ENSTGUG00000025250	ENSTGUG00000026180	CPT1B (ENSTGUG00000021686) #27	ENSTGUG00000019547 #28	NCAPH2 (ENSTGUG00000024475) #22	ENSTGUG00000027032 #31	ENSTGUG00000028871	ENSTGUG00000028323	ENSTGUG00000023344	ENSTGUG00000026385	LEP (ENSTGUG00000022426)	RBM28 (ENSTGUG00000021871)	ENSTGUG00000028384	IMPDH1 (ENSTGUG00000029733)	ENSTGUG00000021573	ENSTGUG00000019852	ENSTGUG00000027720	OPN1SW (ENSTGUG00000025790)	ENSTGUG00000016061	ATP6V1F (ENSTGUG00000028137)
Common canary	MODERN SPECIES	335																NCAPH2 (ENSSCAG00000007796) #22
Galloanserae	ANCESTRAL SPECIES	3	ENSGT00940000160461 #29	ENSGT00950000182939.a.b.a #28	ENSGT00940000159260	ENSGT00510000047270	ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT01010000222360.E.c	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00940000159484	ENSGT00940000157206	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000004852.a.b	ENSGT00390000006086	ENSGT00940000155977	ENSGT00390000016897
Phasianidae	ANCESTRAL SPECIES		ENSGT00940000156551 #33	ENSGT00940000162430 #32	ENSGT00940000162777.a.j	ENSGT00940000157610 #30	ENSGT00940000162777.a.i	ENSGT00940000153561.b.b #31	ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000153772.A	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00940000157206	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000004852.a.b	ENSGT00390000006086	ENSGT00940000155977	ENSGT00390000016897	ENSGT00390000013963	ENSGT00940000160121	ENSGT00940000168513
Phasianidae_b	ANCESTRAL SPECIES	9						ENSGT00940000161709	ENSGT00940000165441	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT00940000157206	ENSGT00950000182981.b.f.a.f	ENSGT00400000022095.a	ENSGT00640000091917	ENSGT00390000006835	ENSGT00390000004852.a.b	ENSGT00390000006086	ENSGT00940000155977	ENSGT00390000016897	ENSGT00390000013963	ENSGT00940000160121	ENSGT00940000168513
Chicken	MODERN SPECIES		ENSGALG00010007427	SHANK3 (ENSGALG00010007457) #31	ENSGALG00010007589	ENSGALG00010007591	ENSGALG00010007592	ENSGALG00010006267	ENSGALG00010006271	ARF5 (ENSGALG00010006288)	GCC1 (ENSGALG00010006300)	DENND6B (ENSGALG00010006327) #16	PPP6R2 (ENSGALG00010006347) #17	SBF1 (ENSGALG00010006372) #18	ADM2 (ENSGALG00010006410) #19	MIOX (ENSGALG00010007888) #20	LMF2 (ENSGALG00010006421) #21	NCAPH2 (ENSGALG00010006457) #22	SCO2 (ENSGALG00010006463) #23	IRF5 (ENSGALG00010005486)	TNPO3 (ENSGALG00010005492)	ENSGALG00010005496	SMO (ENSGALG00010005498)	AHCYL2 (ENSGALG00010005511)	STRIP2 (ENSGALG00010005524)	SMKR1 (ENSGALG00010007597)	NRF1 (ENSGALG00010005546)	UBE2H (ENSGALG00010006496)	ZC3HC1 (ENSGALG00010006528)	KLHDC10 (ENSGALG00010006532)	ENSGALG00010006536	TMEM209 (ENSGALG00010006548)	CPA2 (ENSGALG00010006552)
Turkey	MODERN SPECIES		ENSMGAG00000002460	ENSMGAG00000005344	ENSMGAG00000001104	ENSMGAG00000007116	ENSMGAG00000011441	ENSMGAG00000008311	ENSMGAG00000020647	ENSMGAG00000019721	ENSMGAG00000008562	ENSMGAG00000002631	DENND6B (ENSMGAG00000002574) #16	PPP6R2 (ENSMGAG00000004437) #17	SBF1 (ENSMGAG00000002514) #18	MIOX (ENSMGAG00000002742) #20	LMF2 (ENSMGAG00000002735) #21	NCAPH2 (ENSMGAG00000002891) #22	IRF5 (ENSMGAG00000022799)	TNPO3 (ENSMGAG00000002839)	SMO (ENSMGAG00000002781)	AHCYL2 (ENSMGAG00000002746)	STRIP2 (ENSMGAG00000002686)	NRF1 (ENSMGAG00000002652)	UBE2H (ENSMGAG00000002957)	ZC3HC1 (ENSMGAG00000002977)	KLHDC10 (ENSMGAG00000003019)	ENSMGAG00000003044	TMEM209 (ENSMGAG00000003060)	CPA2 (ENSMGAG00000003101)	ENSMGAG00000017747	CPA1 (ENSMGAG00000003148)	CEP41 (ENSMGAG00000003164)
Japanese quail	MODERN SPECIES		ENSCJPG00005000266	ARSA (ENSCJPG00005000274) #30	ENSCJPG00005000277	ENSCJPG00005000295 #31	ENSCJPG00005000305	ENSCJPG00005000310 ##31	ENSCJPG00005000311 #29	ENSCJPG00005000316	GCC1 (ENSCJPG00005000323)	DENND6B (ENSCJPG00005000338) #16	PPP6R2 (ENSCJPG00005000356) #17	SBF1 (ENSCJPG00005000380) #18	ENSCJPG00005000440 #19	MIOX (ENSCJPG00005000444) #20	LMF2 (ENSCJPG00005000449) #21	NCAPH2 (ENSCJPG00005000460) #22	SCO2 (ENSCJPG00005000464) #23	IRF5 (ENSCJPG00005000471)	TNPO3 (ENSCJPG00005000477)	SMO (ENSCJPG00005000486)	AHCYL2 (ENSCJPG00005000499)	ENSCJPG00005000517	STRIP2 (ENSCJPG00005000519)	SMKR1 (ENSCJPG00005000523)	NRF1 (ENSCJPG00005000527)	UBE2H (ENSCJPG00005000542)	ZC3HC1 (ENSCJPG00005000551)	KLHDC10 (ENSCJPG00005000554)	TMEM209 (ENSCJPG00005000558)	CPA2 (ENSCJPG00005000563)	ENSCJPG00005000571
Anatidae	ANCESTRAL SPECIES	97			ENSGT00940000159260	ENSGT00510000047270	ENSGT00960000191690	ENSGT00940000161709	ENSGT00940000156878	ENSGT00940000153772.A	ENSGT00660000097187	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24
Pink-footed goose	MODERN SPECIES	358				SND1 (ENSABRG00000021754)	LRRC4 (ENSABRG00000021809)	PAX4 (ENSABRG00000021814)	ARF5 (ENSABRG00000021816)	GCC1 (ENSABRG00000021819)	ENSABRG00000021822	DENND6B (ENSABRG00000021828) #16	PPP6R2 (ENSABRG00000021837) #17	SBF1 (ENSABRG00000021840) #18	ADM2 (ENSABRG00000021848) #19	MIOX (ENSABRG00000021851) #20	LMF2 (ENSABRG00000021854) #21	NCAPH2 (ENSABRG00000021858) #22	SCO2 (ENSABRG00000021862) #23	TYMP (ENSABRG00000021864) #24
Australian saltwater crocodile	MODERN SPECIES	49								ENSCPRG00005005456	GCC1 (ENSCPRG00005005451)	DENND6B (ENSCPRG00005005431) #16	PPP6R2 (ENSCPRG00005005098) #17	SBF1 (ENSCPRG00005003782) #18	ADM2 (ENSCPRG00005003636) #19	MIOX (ENSCPRG00005003628) #20	LMF2 (ENSCPRG00005003619) #21	NCAPH2 (ENSCPRG00005003616) #22	SCO2 (ENSCPRG00005003614) #23	TYMP (ENSCPRG00005003609) #24	ODF3B (ENSCPRG00005003599) #25	ENSCPRG00005003597	IRF5 (ENSCPRG00005003592)	TNPO3 (ENSCPRG00005003583)	SMO (ENSCPRG00005003575)	AHCYL2 (ENSCPRG00005002992)	STRIP2 (ENSCPRG00005002397)	SMKR1 (ENSCPRG00005002340)	NRF1 (ENSCPRG00005002334)	UBE2H (ENSCPRG00005002316)	ZC3HC1 (ENSCPRG00005002312)	KLHDC10 (ENSCPRG00005002307)	ENSCPRG00005002297
Anura	ANCESTRAL SPECIES	5	ENSGT00550000074976	ENSGT00390000011772	ENSGT00940000159260	ENSGT00940000165785	ENSGT00510000047270	ENSGT00940000154156.d	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.c	ENSGT00940000153772.A	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000175182	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000160284	ENSGT00940000156551 #33	ENSGT00940000162777.f	ENSGT00940000162777.e	ENSGT00940000157610 #30	ENSGT00940000153561.b.b #31	ENSGT00940000160461 #29	ENSGT00390000003014	ENSGT00950000182939.a.b.a #28	ENSGT01060000248595.b.a.a #27	ENSGT00940000161011.j	ENSGT00940000154447
Frog	MODERN SPECIES	3	lep (ENSXETG00000042746)	ENSXETG00000049436	snd1 (ENSXETG00000023043)	LRRC4 (ENSXETG00000030410)	ENSXETG00000037969	impdh1 (ENSXETG00000023047)	opn1sw (ENSXETG00000023057)	calu (ENSXETG00000023059)	gcc1 (ENSXETG00000023063)	dennd6b (ENSXETG00000023066) #16	ppp6r2 (ENSXETG00000023068) #17	sbf1 (ENSXETG00000023079) #18	ENSXETG00000034576	miox (ENSXETG00000023087) #20	lmf2 (ENSXETG00000023089) #21	ncaph2 (ENSXETG00000023090) #22	ENSXETG00000049228	tymp (ENSXETG00000015724) #24	odf3 (ENSXETG00000015719) #25	nme6 (ENSXETG00000015714)	rabl2b (ENSXETG00000015712) #33	arsa.2 (ENSXETG00000033466) #30	shank3 (ENSXETG00000015689) #31	mapk8ip2 (ENSXETG00000015685) #29	ENSXETG00000040953	chkb (ENSXETG00000031132) #28	cpt1b (ENSXETG00000015426) #27	reg4 (ENSXETG00000033383)	reg1b (ENSXETG00000033573)	hcls1 (ENSXETG00000015412)	ENSXETG00000047176
Leishan spiny toad	MODERN SPECIES	6	ENSLLEG00000023830	PAX4 (ENSLLEG00000023743)	ENSLLEG00000023558	IMPDH1 (ENSLLEG00000023196)	OPN1SW (ENSLLEG00000023103)	CALU (ENSLLEG00000022911)	ENSLLEG00000022856	DENND6B (ENSLLEG00000022454) #16	PPP6R2 (ENSLLEG00000022134) #17	SBF1 (ENSLLEG00000019370) #18	ENSLLEG00000019227	ENSLLEG00000019191	MIOX (ENSLLEG00000018979) #20	LMF2 (ENSLLEG00000018828) #21	SCO2 (ENSLLEG00000018762) #23	NCAPH2 (ENSLLEG00000018366) #22	ENSLLEG00000018321	ENSLLEG00000018253	ENSLLEG00000018136	ENSLLEG00000017935	ENSLLEG00000017808	BAG4 (ENSLLEG00000017662)	ENSLLEG00000017507	STAR (ENSLLEG00000017335)	ASH2L (ENSLLEG00000016401)	ENSLLEG00000016267	TACC1 (ENSLLEG00000015817)	ENSLLEG00000015744	ENSLLEG00000015647	ENSLLEG00000015619	ENSLLEG00000015591
Coelacanth	MODERN SPECIES	1960																NCAPH2 (ENSLACG00000001063) #22	SCO2 (ENSLACG00000003327) #23	ENSLACG00000006245	FLNC (ENSLACG00000007766)
Actinopterygii	ANCESTRAL SPECIES	1	ENSGT00390000008645	ENSGT00940000153110.B	ENSGT00940000154818	ENSGT00940000156615	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b ##15	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00940000155472.b	ENSGT00940000155343.b	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT01030000234563.a.a.c.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.a	ENSGT00390000011863.d
Neopterygii	ANCESTRAL SPECIES	20	ENSGT00390000008645	ENSGT00940000153110.B	ENSGT00940000154818	ENSGT00940000156615	ENSGT00940000160526	ENSGT00940000155016	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b ##15	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122	ENSGT00940000153588.a.b	ENSGT00940000155472.b	ENSGT00940000155343.b	ENSGT00510000047764	ENSGT00940000156619	ENSGT00940000164736	ENSGT00390000015216	ENSGT00940000157480	ENSGT00950000183004.a.b.a.a	ENSGT01030000234563.a.a.c.a	ENSGT00510000047522	ENSGT01070000253775.a.d.a.a.a.b	ENSGT01070000253775.a.d.a.a.a.a
Osteoglossocephalai	ANCESTRAL SPECIES	43	ENSGT00940000154818	ENSGT00940000156615	ENSGT00940000160526	ENSGT00940000155016	ENSGT00940000153655.B	ENSGT00390000003290	ENSGT00940000156334	ENSGT00940000158165	ENSGT00390000005848	ENSGT00940000157275.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b ##15	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Osteoglossiformes	ANCESTRAL SPECIES																	ENSGT00390000014443 #22
P. kingsleyae	MODERN SPECIES	162	tbk1 (ENSPKIG00000002351)	gpr19 (ENSPKIG00000002301)	crebl2 (ENSPKIG00000002284)	dusp16 (ENSPKIG00000002246)	lrp6 (ENSPKIG00000002174)	PTHLH (ENSPKIG00000002142)	AGBL3 (ENSPKIG00000002112)	rpl18a (ENSPKIG00000002081)	xpot (ENSPKIG00000001935)	rtcb (ENSPKIG00000001881)	fbxo7 (ENSPKIG00000001848)	MFAP4 (ENSPKIG00000001795)	MFAP4 (ENSPKIG00000001640)	kiaa0930 (ENSPKIG00000001561)	LTA4H (ENSPKIG00000001490)	NCAPH2 (ENSPKIG00000001436) #22	ENSPKIG00000001418	ENSPKIG00000001409	ENSPKIG00000001388	ENSPKIG00000001370	ENSPKIG00000001350	ENSPKIG00000001309	tdg.1 (ENSPKIG00000001279)	ENSPKIG00000001245	SLC41A2 (ENSPKIG00000001169)	FBXL14 (ENSPKIG00000001135)	ENSPKIG00000001094	stmp1 (ENSPKIG00000001016)	coa6 (ENSPKIG00000001008)	ovch1 (ENSPKIG00000000992)	si:dkey-97m3.1 (ENSPKIG00000000922)
Asian bonytongue	MODERN SPECIES	11	ENSSFOG00015013590	dusp6 (ENSSFOG00015031634)	POC1B (ENSSFOG00015013560)	TES (ENSSFOG00015013536)	ENSSFOG00015013521	cav1 (ENSSFOG00015030307)	met (ENSSFOG00015013423)	ENSSFOG00015013339	ST7 (ENSSFOG00015013213)	asz1 (ENSSFOG00015013181)	cftr (ENSSFOG00015013079)	TIMP3 (ENSSFOG00015013032)	ENSSFOG00015013014	FLNC (ENSSFOG00015012863)	LTA4H (ENSSFOG00015012722)	ENSSFOG00015012650 #22	lamb4 (ENSSFOG00015012356)	ENSSFOG00015012218	PTPRZ1 (ENSSFOG00015012128)	aass (ENSSFOG00015012006)	fezf1 (ENSSFOG00015011943)	CADPS2 (ENSSFOG00015011827)	IQUB (ENSSFOG00015011787)	ndufa5 (ENSSFOG00015011772)	ASB15 (ENSSFOG00015011729)	ASB15 (ENSSFOG00015011697)	wasla (ENSSFOG00015011660)	hyal6 (ENSSFOG00015011649)	HYAL4 (ENSSFOG00015011646)	spam1 (ENSSFOG00015011634)	GPR37 (ENSSFOG00015024804)
Clupeocephala	ANCESTRAL SPECIES	294							ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b ##15	ENSGT00940000166426	ENSGT00940000161090.B.c.b.a.a.a	ENSGT00940000161090.B.c.a.a	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566
Otomorpha	ANCESTRAL SPECIES	386											ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566
Clupeiformes	ANCESTRAL SPECIES	418														ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Denticle herring	MODERN SPECIES	6	sft2d2b (ENSDCDG00000030283)	ENSDCDG00000030274	ENSDCDG00000029956	ENSDCDG00000029941	cryba2a (ENSDCDG00000029939)	cdk5r2a (ENSDCDG00000029938)	ENSDCDG00000029937	CHPF (ENSDCDG00000029935)	ENSDCDG00000029933	asic4b (ENSDCDG00000029886)	ENSDCDG00000029874	gmppab (ENSDCDG00000029858)	ENSDCDG00000029849	cradd (ENSDCDG00000029847)	socs2 (ENSDCDG00000029846)	ncaph2 (ENSDCDG00000029844) #22	sco2 (ENSDCDG00000029842) #23	ENSDCDG00000029840	FLNC (ENSDCDG00000020308)	kcnd2 (ENSDCDG00000020160)	tspan12 (ENSDCDG00000020154)	ing3 (ENSDCDG00000020148)	ENSDCDG00000020145	wnt16 (ENSDCDG00000020142)	ENSDCDG00000020136 ##15	ENSDCDG00000020130 ##15	CEP83 (ENSDCDG00000020117)	arfgap3 (ENSDCDG00000019300)	pacsin2 (ENSDCDG00000019263)	ttll1 (ENSDCDG00000019243)	ENSDCDG00000019237
Atlantic herring	MODERN SPECIES	7	ENSCHAG00000017825	ENSCHAG00000017804	ENSCHAG00000017788	ENSCHAG00000017780	trmu (ENSCHAG00000017690)	ENSCHAG00000016028	ENSCHAG00000015985	ENSCHAG00000015982	phyh (ENSCHAG00000015872)	ucmaa (ENSCHAG00000015857)	ENSCHAG00000015843	ENSCHAG00000015823 ##15	slc22a4 (ENSCHAG00000015709)	socs2 (ENSCHAG00000015691)	cradd (ENSCHAG00000015689)	ENSCHAG00000015681 #22	sco2 (ENSCHAG00000015669) #23	ENSCHAG00000015664	FLNC (ENSCHAG00000003874)	kcnd2 (ENSCHAG00000003420)	tspan12 (ENSCHAG00000003366)	ing3 (ENSCHAG00000003187)	CPED1 (ENSCHAG00000002923)	wnt16 (ENSCHAG00000002894)	ENSCHAG00000002642	ENSCHAG00000002442	ENSCHAG00000002425	ENSCHAG00000002361	ENSCHAG00000025003	ENSCHAG00000024982	ENSCHAG00000024970
Otophysi	ANCESTRAL SPECIES	162	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT00940000164630	ENSGT01050000244882.b.d	ENSGT00940000157710	ENSGT00940000154572	ENSGT00600000084428.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01040000242246	ENSGT00390000017006	ENSGT00940000159852.a	ENSGT00390000007925	ENSGT00940000157097.h	ENSGT00940000158861.B	ENSGT00390000010377	ENSGT00950000183017.b.b.a.a	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b.c	ENSGT01070000253775.a.d.a.a.a.b.d
Characiphysae	ANCESTRAL SPECIES	63	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT00940000164630	ENSGT01050000244882.b.d	ENSGT00940000157710	ENSGT00940000154572	ENSGT00600000084428.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23
Characiphysae_b	ANCESTRAL SPECIES	31	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT00940000164630	ENSGT01050000244882.b.d	ENSGT00940000157710	ENSGT00940000154572	ENSGT00600000084428.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00530000063981.a.g	ENSGT00390000011648.a	ENSGT00390000007283.a	ENSGT00390000001969.b	ENSGT00940000164289.b	ENSGT00390000012875	ENSGT00530000063534.a	ENSGT00940000165989	ENSGT00940000157946.e	ENSGT00940000156400.a	ENSGT00940000154003.A	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00390000009899.b.m #17
Characoidei	ANCESTRAL SPECIES	80	ENSGT00940000156000	ENSGT00390000014084	ENSGT01030000234578.B.a	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT00940000157710	ENSGT00940000154572	ENSGT00600000084428.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00530000063981.a.g	ENSGT00390000011648.a	ENSGT00390000007283.a	ENSGT00390000001969.b	ENSGT00940000164289.b	ENSGT00390000012875	ENSGT00530000063534.a	ENSGT00940000157946.e	ENSGT00940000156400.a	ENSGT00940000154003.A	ENSGT01030000234563.a.a.c.a	ENSGT00950000183004.a.b.a.a	ENSGT00390000009899.b.m #17	ENSGT00390000005529.b #16
Red-bellied piranha	MODERN SPECIES	120														cradd (ENSPNAG00000009609)	socs2 (ENSPNAG00000009598)	ncaph2 (ENSPNAG00000009589) #22	sco2 (ENSPNAG00000009540) #23	PRR5 (ENSPNAG00000009517)	phtf2 (ENSPNAG00000009448)	TMEM60 (ENSPNAG00000009323)	RSBN1L (ENSPNAG00000009316)	ENSPNAG00000001308	GSAP (ENSPNAG00000009262)	ccdc146 (ENSPNAG00000009204)	fgl2a (ENSPNAG00000009177)	lrrc17 (ENSPNAG00000009167)	ENSPNAG00000009155	ENSPNAG00000009125	fam3c (ENSPNAG00000009111)	ppp6r2a (ENSPNAG00000006805) #17	dennd6b (ENSPNAG00000009061) #16
Mexicana tetra	MODERN SPECIES	22	dram1 (ENSAMXG00000031247)	gnptab (ENSAMXG00000007331)	chpt1 (ENSAMXG00000030966)	mybpc1 (ENSAMXG00000037531)	spic (ENSAMXG00000015800)	ENSAMXG00000033995	dnajb9b (ENSAMXG00000041402)	apaf1 (ENSAMXG00000015838)	ENSAMXG00000036523	anks1b (ENSAMXG00000015871)	ENSAMXG00000038317	uhrf1bp1l (ENSAMXG00000015887)	ENSAMXG00000032778 ##15	cradd (ENSAMXG00000030107)	socs2 (ENSAMXG00000015948)	ncaph2 (ENSAMXG00000015963) #22	sco2 (ENSAMXG00000025118) #23	PRR5 (ENSAMXG00000031753)	phtf2 (ENSAMXG00000016006)	ENSAMXG00000041668	TMEM60 (ENSAMXG00000025119)	RSBN1L (ENSAMXG00000016045)	ENSAMXG00000016060	GSAP (ENSAMXG00000016075)	fgl2a (ENSAMXG00000040760)	ccdc146 (ENSAMXG00000016086)	lrrc17 (ENSAMXG00000016099)	CEP83 (ENSAMXG00000016112)	ENSAMXG00000016131	fam3c (ENSAMXG00000016139)	ppp6r2a (ENSAMXG00000016145) #17
Electric eel	MODERN SPECIES	441							si:ch73-252i11.1 (ENSEEEG00000005656)	ETV6 (ENSEEEG00000005654)	ENSEEEG00000005652	zgc:165507 (ENSEEEG00000005650)	lrig3 (ENSEEEG00000005644)	atp23 (ENSEEEG00000005642)	rpap3 (ENSEEEG00000005627)	cradd (ENSEEEG00000005619)	socs2 (ENSEEEG00000005618)	ncaph2 (ENSEEEG00000005615) #22	sco2 (ENSEEEG00000005613) #23	PRR5 (ENSEEEG00000005611)
Cyprinoidei	ANCESTRAL SPECIES	28	ENSGT00390000006747	ENSGT00950000183117.a.a	ENSGT00940000158254	ENSGT00940000155067.b.a	ENSGT00940000155067.a	ENSGT00940000156246.c.b	ENSGT01050000244882.b.d	ENSGT00940000157710	ENSGT00940000154572	ENSGT00600000084428.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01040000242246	ENSGT00390000017006	ENSGT00940000159852.a	ENSGT00390000007925	ENSGT00940000157097.h	ENSGT00940000158861.B	ENSGT00390000010377	ENSGT00950000183017.b.b.a.a	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b.c	ENSGT01070000253775.a.d.a.a.a.b.d	ENSGT00510000047522	ENSGT01030000234980	ENSGT00390000013715
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	44	ENSGT00940000158254.d	ENSGT00940000155067.b.a.b	ENSGT00940000155067.a.v	ENSGT00940000156246.c.b.a	ENSGT01050000244882.b.d.b	ENSGT00940000157710.f	ENSGT00940000154572.e.a	ENSGT00600000084428.b.h	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983.t	ENSGT01020000230616	ENSGT00390000014443.b #22	ENSGT00940000157983.s	ENSGT00390000014443.a #22	ENSGT00390000004323.a #23	ENSGT00390000017006.c	ENSGT00940000159852.a.b	ENSGT00390000007925	ENSGT00940000157097.h.a	ENSGT00940000158861.B.b	ENSGT00390000010377.g	ENSGT00950000183017.b.b.a.a.g	ENSGT01070000253775.a.d.a.a.a.b.c.b	ENSGT00510000047522.c.b	ENSGT01030000234980.c	ENSGT00390000013715.a	ENSGT00940000164058.j	ENSGT00940000154156.c.b.a	ENSGT00730000111591.b.j
Cyprininae_a	ANCESTRAL SPECIES	200										ENSGT00940000154572.f	ENSGT00940000177480.a	ENSGT00940000154572.e.b	ENSGT00600000084428.b.g	ENSGT00390000014448.l	ENSGT00940000157983.s	ENSGT00390000014443.a #22	ENSGT00390000004323.a.e #23	ENSGT00940000162970	ENSGT00390000017006.d	ENSGT00940000159852.a.b	ENSGT00940000157097.h.b	ENSGT00940000158861.B.a	ENSGT00390000010377.h	ENSGT00950000183017.b.b.a.a.h	ENSGT01070000253775.a.d.a.a.a.a	ENSGT01070000253775.a.d.a.a.a.b.c.a	ENSGT01070000253775.a.d.a.a.a.b.d.a	ENSGT00510000047522.c.a	ENSGT01030000234980.d	ENSGT00390000013715.b	ENSGT00940000154429
Golden-line barbel	MODERN SPECIES	7	klhl42 (ENSSGRG00000037765)	cwf19l1 (ENSSGRG00000037766)	washc3 (ENSSGRG00000037799)	dram1 (ENSSGRG00000037800)	gnptab (ENSSGRG00000037804)	chpt1 (ENSSGRG00000037889)	mybpc1 (ENSSGRG00000037925)	ENSSGRG00000038439	spic (ENSSGRG00000038440)	dnajb9b (ENSSGRG00000038441)	avpr2l (ENSSGRG00000038442)	anks1b (ENSSGRG00000038446)	uhrf1bp1l (ENSSGRG00000038491)	cradd (ENSSGRG00000038500)	socs2 (ENSSGRG00000038501)	ncaph2 (ENSSGRG00000038502) #22	sco2 (ENSSGRG00000038505) #23	ENSSGRG00000038508	rint1 (ENSSGRG00000038509)	cdkn1ba (ENSSGRG00000038536)	ENSSGRG00000038537	pparaa (ENSSGRG00000038539)	ENSSGRG00000038548	atxn10 (ENSSGRG00000038550)	ENSSGRG00000038552	slc26a4 (ENSSGRG00000038553)	slc26a3.2 (ENSSGRG00000038556)	slc26a3.1 (ENSSGRG00000038571)	cbll1 (ENSSGRG00000038574)	MCAT (ENSSGRG00000038579)	ENSSGRG00000038580
Common carp reference	MODERN SPECIES	8	washc3 (ENSCCRG00000057924)	dram1 (ENSCCRG00000031656)	gnptab (ENSCCRG00000081071)	chpt1 (ENSCCRG00000065425)	mybpc1 (ENSCCRG00000042444)	ENSCCRG00000043300	spic (ENSCCRG00000043304)	dnajb9b (ENSCCRG00000075779)	avpr2l (ENSCCRG00000009813)	apaf1 (ENSCCRG00000080886)	anks1b (ENSCCRG00000072266)	uhrf1bp1l (ENSCCRG00000001016)	ENSCCRG00000073704 ##15	cradd (ENSCCRG00000043779)	socs2 (ENSCCRG00000075325)	ncaph2 (ENSCCRG00000020929) #22	sco2 (ENSCCRG00000059810) #23	rint1 (ENSCCRG00000020182)	cdkn1ba (ENSCCRG00000070949)	pparaa (ENSCCRG00000020939)	ENSCCRG00000062955	atxn10 (ENSCCRG00000020955)	ENSCCRG00000020963	slc26a4 (ENSCCRG00000035641)	slc26a3.2 (ENSCCRG00000029675)	slc26a3.1 (ENSCCRG00000036251)	cbll1 (ENSCCRG00000029584)	bik (ENSCCRG00000036551)	ENSCCRG00000074195	rap1b (ENSCCRG00000034488)	ENSCCRG00000058295
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	33	MCAT (ENSCARG00000005433)	bik (ENSCARG00000005424)	cbll1 (ENSCARG00000005411)	slc26a3.1 (ENSCARG00000005382)	slc26a3.2 (ENSCARG00000005169)	slc26a4 (ENSCARG00000004795)	ENSCARG00000004752	atxn10 (ENSCARG00000004718)	ENSCARG00000004692	ENSCARG00000004675	uhrf1bp1l (ENSCARG00000004647)	ENSCARG00000004578	ENSCARG00000004535 ##15	ENSCARG00000004520	socs2 (ENSCARG00000004511)	ncaph2 (ENSCARG00000004490) #22	sco2 (ENSCARG00000004480) #23	cdkn1ba (ENSCARG00000004475)	pparaa (ENSCARG00000004463)	hgfa (ENSCARG00000004392)	ENSCARG00000004367	LRRC4 (ENSCARG00000004359)	snd1 (ENSCARG00000001913)	dera (ENSCARG00000001719)	mgst1.2 (ENSCARG00000001714)	ENSCARG00000001708	mgst1.1 (ENSCARG00000001703)	lmo3 (ENSCARG00000001688)	arhgef39 (ENSCARG00000001678)	rergla (ENSCARG00000001671)	ENSCARG00000001649
Goldfish	MODERN SPECIES	3046															socs2 (ENSCARG00000042115)	ncaph2 (ENSCARG00000042077) #22
Cyprininae	ANCESTRAL SPECIES	44	ENSGT00390000006747.m	ENSGT00950000183117.a.a.j	ENSGT00940000158254.d	ENSGT00940000155067.b.a.b	ENSGT00940000155067.a.v	ENSGT00940000156246.c.b.a	ENSGT01050000244882.b.d.b	ENSGT00940000157710.f	ENSGT00940000154572.e.a	ENSGT00600000084428.b.h	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983.t	ENSGT01020000230616	ENSGT00390000014443.b #22	ENSGT00940000157983.s	ENSGT00390000014443.a #22	ENSGT00390000004323.a #23	ENSGT00390000017006.c	ENSGT00940000159852.a.b	ENSGT00390000007925	ENSGT00940000157097.h.a	ENSGT00940000158861.B.b	ENSGT00390000010377.g	ENSGT00950000183017.b.b.a.a.g	ENSGT01070000253775.a.d.a.a.a.b.c.b	ENSGT00510000047522.c.b	ENSGT01030000234980.c	ENSGT00390000013715.a	ENSGT00940000164058.j
Cyprininae_a	ANCESTRAL SPECIES	223	ENSGT01030000234578.B.a.b	ENSGT00390000006747.m	ENSGT00950000183117.a.a.j	ENSGT00940000158254.d	ENSGT00940000155067.b.a.b	ENSGT00940000155067.a.v	ENSGT00940000156246.c.b.a	ENSGT01050000244882.b.d.b	ENSGT00940000157710.f	ENSGT00940000154572.e.a	ENSGT00600000084428.b.h	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.b ##15	ENSGT00390000014448.k	ENSGT00940000157983.t	ENSGT01020000230616	ENSGT00390000014443.b #22	ENSGT00390000004323.a.f #23	ENSGT00390000017006.c	ENSGT00940000159852.a.a	ENSGT00390000007925	ENSGT00940000157097.h.a	ENSGT00940000158861.B.b	ENSGT00390000010377.g	ENSGT00950000183017.b.b.a.a.g	ENSGT01070000253775.a.d.a.a.a.b.c.b	ENSGT00510000047522.c.b	ENSGT01030000234980.c	ENSGT00390000013715.a	ENSGT00940000164058.j	ENSGT00940000154156.c.b.a	ENSGT00730000111591.b.j
Golden-line barbel	MODERN SPECIES	483								wnt5a (ENSSGRG00000026616)	ENSSGRG00000026615	ENSSGRG00000026613	LRTM1 (ENSSGRG00000026612)	cradd (ENSSGRG00000026605)	ENSSGRG00000026604	socs2 (ENSSGRG00000026603)	ENSSGRG00000026602	ncaph2 (ENSSGRG00000026599) #22	sco2 (ENSSGRG00000026597) #23	rint1 (ENSSGRG00000026586)	cdkn1ba (ENSSGRG00000026584)	cdpf1 (ENSSGRG00000026583)	pparaa (ENSSGRG00000026581)	ENSSGRG00000026579	atxn10 (ENSSGRG00000026578)	ENSSGRG00000026576	slc26a4 (ENSSGRG00000026567)	ENSSGRG00000026566	slc26a3.1 (ENSSGRG00000026565)	bik (ENSSGRG00000026563)	cbll1 (ENSSGRG00000026560)	MCAT (ENSSGRG00000026559)	rap1b (ENSSGRG00000026414)
Common carp reference	MODERN SPECIES	36	dram1 (ENSCCRG00000038915)	chpt1 (ENSCCRG00000039523)	mybpc1 (ENSCCRG00000040183)	ENSCCRG00000042420	spic (ENSCCRG00000042424)	GNPTAB (ENSCCRG00000038935)	dnajb9b (ENSCCRG00000075532)	avpr2l (ENSCCRG00000031437)	apaf1 (ENSCCRG00000012510)	anks1b (ENSCCRG00000058152)	uhrf1bp1l (ENSCCRG00000051878)	ENSCCRG00000068849 ##15	ENSCCRG00000072762 ##15	cradd (ENSCCRG00000079735)	socs2 (ENSCCRG00000020927)	ncaph2 (ENSCCRG00000020157) #22	sco2 (ENSCCRG00000067408) #23	ENSCCRG00000073882	ENSCCRG00000069107	rint1 (ENSCCRG00000059187)	cdkn1ba (ENSCCRG00000067944)	pparaa (ENSCCRG00000008572)	ENSCCRG00000078586	atxn10 (ENSCCRG00000030010)	ENSCCRG00000029995	slc26a3.2 (ENSCCRG00000035774)	cbll1 (ENSCCRG00000036543)	bik (ENSCCRG00000020993)	ENSCCRG00000020997	ENSCCRG00000021005	impdh1b (ENSCCRG00000076447)
Goldfish	MODERN SPECIES	21	cwf19l1 (ENSCARG00000035086)	washc3 (ENSCARG00000035026)	dram1 (ENSCARG00000035003)	chpt1 (ENSCARG00000034926)	gnptab (ENSCARG00000034674)	mybpc1 (ENSCARG00000030596)	spic (ENSCARG00000030425)	dnajb9b (ENSCARG00000030416)	avpr2l (ENSCARG00000030407)	anks1b (ENSCARG00000026817)	uhrf1bp1l (ENSCARG00000026618)	ENSCARG00000026605 ##15	ENSCARG00000026595	cradd (ENSCARG00000026584)	socs2 (ENSCARG00000026577)	ncaph2 (ENSCARG00000026558) #22	ENSCARG00000026500	ENSCARG00000026477	rint1 (ENSCARG00000026452)	cdkn1ba (ENSCARG00000026445)	cdpf1 (ENSCARG00000026418)	pparaa (ENSCARG00000026407)	ENSCARG00000026389	atxn10 (ENSCARG00000026355)	ENSCARG00000026346	slc26a3.2 (ENSCARG00000024645)	cbll1 (ENSCARG00000024535)	bik (ENSCARG00000024524)	MCAT (ENSCARG00000024512)	rap1b (ENSCARG00000024464)	impdh1b (ENSCARG00000024123)
Zebrafish	MODERN SPECIES	19	washc3 (ENSDARG00000045563)	dram1 (ENSDARG00000045561)	gnptab (ENSDARG00000030153)	chpt1 (ENSDARG00000014572)	mybpc1 (ENSDARG00000045560)	ENSDARG00000087438	spic (ENSDARG00000012435)	dnajb9b (ENSDARG00000016886)	avpr2l (ENSDARG00000076690)	apaf1 (ENSDARG00000021239)	anks1b (ENSDARG00000003512)	uhrf1bp1l (ENSDARG00000004055)	PLXNC1 (ENSDARG00000015278) ##15	cradd (ENSDARG00000028192)	socs2 (ENSDARG00000045557)	ncaph2 (ENSDARG00000033757) #22	sco2 (ENSDARG00000045555) #23	ENSDARG00000073965	ENSDARG00000045552	rint1 (ENSDARG00000005547)	cdkn1ba (ENSDARG00000029018)	cdpf1 (ENSDARG00000095705)	pparaa (ENSDARG00000031777)	ENSDARG00000022858	atxn10 (ENSDARG00000008439)	ENSDARG00000034717	slc26a4 (ENSDARG00000069431)	slc26a3.2 (ENSDARG00000003615)	slc26a3.1 (ENSDARG00000007371)	cbll1 (ENSDARG00000015222)	MCAT (ENSDARG00000096473)
Euteleosteomorpha	ANCESTRAL SPECIES	30	ENSGT00390000007134	ENSGT00390000011492.a	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b ##15	ENSGT00940000166426	ENSGT00940000161090.B.c.b.a.a.a	ENSGT00940000161090.B.c.a.a	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566
Acanthomorphata	ANCESTRAL SPECIES	76	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566
Euacanthomorphacea	ANCESTRAL SPECIES	45	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566	ENSGT00940000163017
Percomorphaceae	ANCESTRAL SPECIES	35	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000159401.c
Percomorphaceae_B	ANCESTRAL SPECIES	27	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529
Percomorphaceae_C	ANCESTRAL SPECIES	22	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529
Percomorphaceae_D	ANCESTRAL SPECIES	22	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375
Carangaria	ANCESTRAL SPECIES	28	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375
Carangaria_A	ANCESTRAL SPECIES	69	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000177211.a.b
Seriola	ANCESTRAL SPECIES	104	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b.lc.a.a	ENSGT01070000256091	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000177211.a.b	ENSGT00940000181598
Yellowtail amberjack	MODERN SPECIES	3099												ENSSLDG00000011640	cradd (ENSSLDG00000011669)	socs2 (ENSSLDG00000011686)	ENSSLDG00000011694	ncaph2 (ENSSLDG00000011704) #22	ENSSLDG00000011770	FLNC (ENSSLDG00000012024)
Greater amberjack	MODERN SPECIES	85	rtcb (ENSSDUG00000012605)	xpot (ENSSDUG00000012514)	rpl18a (ENSSDUG00000012476)	pthlha (ENSSDUG00000012461)	C11orf98 (ENSSDUG00000012443)	ENSSDUG00000012429	lrp6 (ENSSDUG00000012323)	tbk1 (ENSSDUG00000012247)	gpr19 (ENSSDUG00000012227)	crebl2 (ENSSDUG00000012216)	dusp16 (ENSSDUG00000012199)	eps8a (ENSSDUG00000012072)	PTPRO (ENSSDUG00000011991)	cradd (ENSSDUG00000011973)	socs2 (ENSSDUG00000011967)	ncaph2 (ENSSDUG00000011924) #22	sco2 (ENSSDUG00000011906) #23	ENSSDUG00000011884	FLNC (ENSSDUG00000011793)	kcnd2 (ENSSDUG00000011772)	tspan12 (ENSSDUG00000011756)	ing3 (ENSSDUG00000011731)	wnt16 (ENSSDUG00000011687)	ENSSDUG00000011626	ENSSDUG00000011596	ovch1 (ENSSDUG00000011566)	parp12b (ENSSDUG00000011543)	ENSSDUG00000011529	svopl (ENSSDUG00000011494)	ENSSDUG00000011475	ENSSDUG00000011467
Barramundi perch	MODERN SPECIES	60	ENOX1 (ENSLCAG00010020461)	ENSLCAG00010020465	eps8a (ENSLCAG00010020480)	dusp16 (ENSLCAG00010020499)	gpr19 (ENSLCAG00010020504)	crebl2 (ENSLCAG00010020507)	tbk1 (ENSLCAG00010020516)	lrp6 (ENSLCAG00010020570)	ENSLCAG00010020833	C11orf98 (ENSLCAG00010020836)	pthlha (ENSLCAG00010020842)	rpl18a (ENSLCAG00010020846)	xpot (ENSLCAG00010020874)	rtcb (ENSLCAG00010020903)	fbxo7 (ENSLCAG00010020957)	ncaph2 (ENSLCAG00010021066) #22	sco2 (ENSLCAG00010021071) #23	ENSLCAG00010021074	FLNC (ENSLCAG00010021189)	ENSLCAG00010021566
Pleuronectoidei	ANCESTRAL SPECIES	61	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000153377.A	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000181823	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375	ENSGT00940000156878.i.b.a.a
Turbot	MODERN SPECIES	11	ENSSMAG00000038023	pthlha (ENSSMAG00000010549)	dusp16 (ENSSMAG00000010564)	crebl2 (ENSSMAG00000010592)	gpr19 (ENSSMAG00000010603)	tbk1 (ENSSMAG00000010611)	ENSSMAG00000010656	ENSSMAG00000010708	ENSSMAG00000028724	ENSSMAG00000010736	ENSSMAG00000035764	ENSSMAG00000036104	ENSSMAG00000025364	ENSSMAG00000032303	ENSSMAG00000010858	ENSSMAG00000010921 #22	ENSSMAG00000010937 #23	ENSSMAG00000021578	ENSSMAG00000010959	kcnd2 (ENSSMAG00000011026)	tspan12 (ENSSMAG00000027018)	ing3 (ENSSMAG00000011057)	ENSSMAG00000030005	ENSSMAG00000031420	wnt16 (ENSSMAG00000011086)	ENSSMAG00000011097	ENSSMAG00000024126	ENSSMAG00000011235	mical3b (ENSSMAG00000011272)	ENSSMAG00000011295	ENSSMAG00000011361
Anabantaria	ANCESTRAL SPECIES	27	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375
Anabantoidei	ANCESTRAL SPECIES	21	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT01030000234601.n.a.a.b.a	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375
Climbing perch	MODERN SPECIES	14	fbxo7 (ENSATEG00000000608)	ENSATEG00000000618	xpot (ENSATEG00000000675)	ENSATEG00000000802	ENSATEG00000000811	ENSATEG00000000814	ENSATEG00000000851	tbk1 (ENSATEG00000000952)	gpr19 (ENSATEG00000001050)	crebl2 (ENSATEG00000025249)	dusp16 (ENSATEG00000001097)	ENSATEG00000001135	ENSATEG00000001206	cradd (ENSATEG00000001460)	socs2 (ENSATEG00000029174)	ncaph2 (ENSATEG00000001488) #22	sco2 (ENSATEG00000001500) #23	ENSATEG00000001513	ENSATEG00000001587	kcnd2 (ENSATEG00000001819)	tspan12 (ENSATEG00000029209)	ing3 (ENSATEG00000001895)	ENSATEG00000026395	wnt16 (ENSATEG00000025535)	stab2 (ENSATEG00000001977)	ENSATEG00000026682	parp12b (ENSATEG00000002255)	ENSATEG00000028301	ENSATEG00000028819	ENSATEG00000002301	svopl (ENSATEG00000002451)
Siamese fighting fish	MODERN SPECIES	20	fbxo7 (ENSBSLG00000001914)	rtcb (ENSBSLG00000001934)	xpot (ENSBSLG00000001958)	rpl18a (ENSBSLG00000002004)	pthlha (ENSBSLG00000002140)	C11orf98 (ENSBSLG00000002152)	ENSBSLG00000002168	lrp6 (ENSBSLG00000002259)	tbk1 (ENSBSLG00000002592)	gpr19 (ENSBSLG00000002754)	crebl2 (ENSBSLG00000002762)	dusp16 (ENSBSLG00000002797)	PTPRO (ENSBSLG00000003992)	cradd (ENSBSLG00000004438)	socs2 (ENSBSLG00000004439)	ncaph2 (ENSBSLG00000004443) #22	sco2 (ENSBSLG00000004451) #23	ENSBSLG00000004454	FLNC (ENSBSLG00000005062)	kcnd2 (ENSBSLG00000006069)	tspan12 (ENSBSLG00000006073)	ing3 (ENSBSLG00000006080)	ENSBSLG00000006338	wnt16 (ENSBSLG00000006520)	stab2 (ENSBSLG00000006731)	ENSBSLG00000007282	parp12b (ENSBSLG00000007288)	svopl (ENSBSLG00000007322)	ENSBSLG00000007385	lta4h (ENSBSLG00000007403)	dennd6b (ENSBSLG00000007523) #16
Zig-zag eel	MODERN SPECIES	15	ENSMAMG00000020676	xpot (ENSMAMG00000020690)	ENSMAMG00000020722	ENSMAMG00000020730	C11orf98 (ENSMAMG00000027792)	ENSMAMG00000027690	ENSMAMG00000020748	ENSMAMG00000020771	crebl2 (ENSMAMG00000020787)	ENSMAMG00000020803	ENSMAMG00000020809	ENSMAMG00000020816	ENSMAMG00000020840	cradd (ENSMAMG00000020862)	socs2 (ENSMAMG00000027551)	ncaph2 (ENSMAMG00000020866) #22	sco2 (ENSMAMG00000020874) #23	ENSMAMG00000020878	ENSMAMG00000020885	kcnd2 (ENSMAMG00000020906)	tspan12 (ENSMAMG00000026832)	ing3 (ENSMAMG00000020912)	CPED1 (ENSMAMG00000020919)	wnt16 (ENSMAMG00000020921)	stab2 (ENSMAMG00000020926)	ENSMAMG00000020966	parp12b (ENSMAMG00000021004)	ENSMAMG00000021019	svopl (ENSMAMG00000021056)	ENSMAMG00000021076	TNPO3 (ENSMAMG00000021096)
Eupercaria	ANCESTRAL SPECIES	21	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375
Tetraodontidae	ANCESTRAL SPECIES	112						ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000155472.a.b.b	ENSGT00510000047764	ENSGT00940000156619.f	ENSGT00940000157480
Tetraodon	MODERN SPECIES	26	cntn2 (ENSTNIG00000006124)	chia.3 (ENSTNIG00000006123)	chia.1 (ENSTNIG00000000017)	ENSTNIG00000006120	cldn10a (ENSTNIG00000006119)	ENSTNIG00000006118	ANKRD33B (ENSTNIG00000005744)	ENSTNIG00000006115	ENSTNIG00000006114	pcgf5a (ENSTNIG00000006113)	ANKRD1 (ENSTNIG00000006112)	ENSTNIG00000006111	PTPRO (ENSTNIG00000006110)	cradd (ENSTNIG00000006109)	socs2 (ENSTNIG00000006108)	ncaph2 (ENSTNIG00000006107) #22	sco2 (ENSTNIG00000006106) #23	ENSTNIG00000001120	ENSTNIG00000006817	SLITRK2 (ENSTNIG00000006071)	usp25 (ENSTNIG00000006070)	slc8a2a (ENSTNIG00000006069)	irf2bp1 (ENSTNIG00000001701)	micu2 (ENSTNIG00000006068)	ENSTNIG00000006067	DOK7 (ENSTNIG00000006060)	HGFAC (ENSTNIG00000006059)	ENSTNIG00000006058	dtx4a (ENSTNIG00000006057)	coro1b (ENSTNIG00000006056)	osbp (ENSTNIG00000006055)
Fugu	MODERN SPECIES	9													cradd (ENSTRUG00000024874)	ENSTRUG00000031404	socs2 (ENSTRUG00000027093)	ENSTRUG00000031324 #22	sco2 (ENSTRUG00000026134) #23	ENSTRUG00000026406	ENSTRUG00000031645	tspan12 (ENSTRUG00000020619)	ing3 (ENSTRUG00000001599)	wnt16 (ENSTRUG00000011840)	CNOT2 (ENSTRUG00000002202)	ENSTRUG00000029176	ENSTRUG00000028949	ENSTRUG00000020888	KCNA1 (ENSTRUG00000001616)	ENSTRUG00000002493	ENSTRUG00000021771	nup50 (ENSTRUG00000031740)	kiaa0930 (ENSTRUG00000000520)
Eupecaria_A	ANCESTRAL SPECIES	21	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529
Ballan wrasse	DUPLICATION
Ballan wrasse	MODERN SPECIES	738								tbk1 (ENSLBEG00000007357)	gpr19 (ENSLBEG00000007323)	crebl2 (ENSLBEG00000007299)	dusp16 (ENSLBEG00000007277)	eps8a (ENSLBEG00000007153)	PTPRO (ENSLBEG00000007005)	cradd (ENSLBEG00000006943)	socs2 (ENSLBEG00000006939)	ncaph2 (ENSLBEG00000006868) #22	sco2 (ENSLBEG00000006831) #23	ENSLBEG00000006811
Ballan wrasse	MODERN SPECIES	3598																ncaph2 (ENSLBEG00000006307) #22	sco2 (ENSLBEG00000006383) #23
Eupecaria_B	ANCESTRAL SPECIES	21	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529
Eupecaria_C	ANCESTRAL SPECIES	18	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375
Gilthead seabream	MODERN SPECIES	5	crebl2 (ENSSAUG00010016569)	gpr19 (ENSSAUG00010016571)	tbk1 (ENSSAUG00010016611)	lrp6 (ENSSAUG00010016689)	ENSSAUG00010016840	ENSSAUG00010016841	C11orf98 (ENSSAUG00010016842)	xpot (ENSSAUG00010016848)	rpl18a (ENSSAUG00010016867)	ENSSAUG00010016873	dusp16 (ENSSAUG00010016875)	eps8a (ENSSAUG00010016903)	ENSSAUG00010017776	cradd (ENSSAUG00010017778)	socs2 (ENSSAUG00010017779)	ncaph2 (ENSSAUG00010017781) #22	sco2 (ENSSAUG00010017783) #23	FLNC (ENSSAUG00010017805)	ENSSAUG00010019210	tspan12 (ENSSAUG00010019215)	ing3 (ENSSAUG00010019230)	wnt16 (ENSSAUG00010019439)	stab2 (ENSSAUG00010001819)	ovch1 (ENSSAUG00010005449)	ENSSAUG00010005454	parp12b (ENSSAUG00010005456)	ENSSAUG00010005464	svopl (ENSSAUG00010005481)	mical3b (ENSSAUG00010005511)	mical3b (ENSSAUG00010005514)	lta4h (ENSSAUG00010005528)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	46	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000169980	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000156375
Large yellow croaker	MODERN SPECIES	482	gjd2b (ENSLCRG00005003523)	ENSLCRG00005003525	meis2b (ENSLCRG00005003529)	ENSLCRG00005003533	C14orf132 (ENSLCRG00005003534)	ENSLCRG00005003535	ENSLCRG00005003536	ENSLCRG00005003537	CNIH3 (ENSLCRG00005003538)	ENSLCRG00005003540	rpl7l1 (ENSLCRG00005003541)	slc5a6a (ENSLCRG00005003545)	ENSLCRG00005003547	cradd (ENSLCRG00005003769)	socs2 (ENSLCRG00005003771)	ncaph2 (ENSLCRG00005003772) #22	sco2 (ENSLCRG00005003774) #23	ENSLCRG00005003775	kcnd2 (ENSLCRG00005004231)	tspan12 (ENSLCRG00005004235)	ing3 (ENSLCRG00005004237)	CPED1 (ENSLCRG00005004252)	wnt16 (ENSLCRG00005004268)	ovch1 (ENSLCRG00005004438)	parp12b (ENSLCRG00005004442)	ENSLCRG00005004448	svopl (ENSLCRG00005004454)	mical3b (ENSLCRG00005004511)	lta4h (ENSLCRG00005004550)	dennd6b (ENSLCRG00005004610) #16	gcc1 (ENSLCRG00005005115)
European seabass	MODERN SPECIES	12	ENSDLAG00005027134	ENSDLAG00005029275	ENSDLAG00005028838	ENSDLAG00005028201	ENSDLAG00005014893	tbk1 (ENSDLAG00005014011)	gpr19 (ENSDLAG00005027573)	crebl2 (ENSDLAG00005028749)	dusp16 (ENSDLAG00005031476)	ENSDLAG00005019098	ENSDLAG00005032147	ENSDLAG00005023759	ENSDLAG00005023493	cradd (ENSDLAG00005024603)	socs2 (ENSDLAG00005027365)	ncaph2 (ENSDLAG00005014061) #22	sco2 (ENSDLAG00005003872) #23	ENSDLAG00005027766	ENSDLAG00005014174	kcnd2 (ENSDLAG00005011187)	tspan12 (ENSDLAG00005031559)	ing3 (ENSDLAG00005007310)	CPED1 (ENSDLAG00005032049)	ENSDLAG00005033048	stab2 (ENSDLAG00005003809)	ENSDLAG00005003686	ENSDLAG00005034901	ENSDLAG00005028118	ENSDLAG00005021542	ssbp1 (ENSDLAG00005033320)	creb3l2 (ENSDLAG00005021521)
Perciformes	ANCESTRAL SPECIES	18	ENSGT00390000006670	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529
Cottioidei	ANCESTRAL SPECIES	55	ENSGT00390000006670	ENSGT00940000155911	ENSGT00390000007890	ENSGT00390000015797	ENSGT00390000004933.k.a	ENSGT00390000002615	ENSGT00940000158990.t	ENSGT00950000182937.B.b	ENSGT00940000160365	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d	ENSGT00940000163017	ENSGT00940000164581.A.a.b	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b	ENSGT00940000163529
Lumpfish	MODERN SPECIES	15	ENSCLMG00005015902	pthlha (ENSCLMG00005015904)	C11orf98 (ENSCLMG00005015905)	lrp6 (ENSCLMG00005015932)	tbk1 (ENSCLMG00005018688)	gpr19 (ENSCLMG00005018689)	crebl2 (ENSCLMG00005018690)	dusp16 (ENSCLMG00005018691)	eps8a (ENSCLMG00005018692)	PTPRO (ENSCLMG00005018694)	ENSCLMG00005018697	ENSCLMG00005018698	ENSCLMG00005018699	cradd (ENSCLMG00005018700)	socs2 (ENSCLMG00005018701)	ncaph2 (ENSCLMG00005018702) #22	sco2 (ENSCLMG00005018704) #23	FLNC (ENSCLMG00005002811)	kcnd2 (ENSCLMG00005002899)	tspan12 (ENSCLMG00005002973)	ing3 (ENSCLMG00005003001)	wnt16 (ENSCLMG00005003179)	ENSCLMG00005003195	stab2 (ENSCLMG00005003197)	ovch1 (ENSCLMG00005003199)	ENSCLMG00005003238	ENSCLMG00005003242	svopl (ENSCLMG00005003254)	mical3b (ENSCLMG00005003474)	lta4h (ENSCLMG00005003481)	atp6v1f (ENSCLMG00005004143)
Stickleback	MODERN SPECIES	591	fbxo7 (ENSGACG00000000581)	rtcb (ENSGACG00000000586)	xpot (ENSGACG00000000589)	rpl18a (ENSGACG00000000590)	pthlha (ENSGACG00000000596)	C11orf98 (ENSGACG00000000597)	lrp6 (ENSGACG00000000598)	tbk1 (ENSGACG00000000607)	gpr19 (ENSGACG00000000611)	crebl2 (ENSGACG00000000613)	dusp16 (ENSGACG00000000616)	eps8a (ENSGACG00000000619)	PTPRO (ENSGACG00000000623)	cradd (ENSGACG00000000634)	socs2 (ENSGACG00000000635)	ncaph2 (ENSGACG00000000636) #22	sco2 (ENSGACG00000000639) #23	ENSGACG00000000640	FLNC (ENSGACG00000000642)	kcnd2 (ENSGACG00000000650)	tspan12 (ENSGACG00000000652)	ing3 (ENSGACG00000000654)	ENSGACG00000000655	wnt16 (ENSGACG00000000657)	ovch1 (ENSGACG00000000658)	ENSGACG00000000660	svopl (ENSGACG00000000662)	mical3b (ENSGACG00000000668)	ENSGACG00000000673	lta4h (ENSGACG00000000675)	atp6v1f (ENSGACG00000000683)
Perciformes_a	ANCESTRAL SPECIES	58	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000156375	ENSGT00940000155580.b.a.b	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448
Channel bull blenny	MODERN SPECIES	38											ENSCGOG00000017627	ENSCGOG00000017625	ENSCGOG00000017616	FLNC (ENSCGOG00000014683)	ENSCGOG00000014602	ncaph2 (ENSCGOG00000014600) #22	sco2 (ENSCGOG00000014599) #23	socs2 (ENSCGOG00000014598)	cradd (ENSCGOG00000014596)
Ovalentaria	ANCESTRAL SPECIES	24	ENSGT00940000156375	ENSGT00940000155580.b.a.b.e.b	ENSGT00940000163529	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00950000182937.B.b	ENSGT00940000158990.t	ENSGT00940000169980	ENSGT00390000002615	ENSGT00390000004933.k.a
Atherinomorphae	ANCESTRAL SPECIES	37	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00940000154814.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01030000234549.a.a.a.a.b	ENSGT01010000222360.E.d	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00390000013208	ENSGT00390000016053	ENSGT00940000156878.i.b.a.a	ENSGT00940000153772.A	ENSGT00390000005529.b #16	ENSGT00940000156375	ENSGT00940000163529	ENSGT00940000155580.b.a.b.f
Cyprinodontiformes	ANCESTRAL SPECIES	19	ENSGT00390000005388	ENSGT00940000157164	ENSGT00940000156403.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01010000222360.E.d	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a
Cyprinodontoidei	ANCESTRAL SPECIES	74				ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01010000222360.E.d	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00940000159122.h	ENSGT00530000063472.a	ENSGT00940000158632
NAME_4	ANCESTRAL SPECIES	208				ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT01020000230616	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01010000222360.E.d	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00940000159122.h	ENSGT00530000063472.a	ENSGT00940000158632
Sheepshead minnow	MODERN SPECIES	513														ENSCVAG00000019576	ENSCVAG00000019603	ncaph2 (ENSCVAG00000019673) #22	sco2 (ENSCVAG00000019716) #23	calua (ENSCVAG00000019744)	opn1sw1 (ENSCVAG00000019774)	opn1sw1 (ENSCVAG00000019796)	svopl (ENSCVAG00000019866)	ENSCVAG00000019902	ENSCVAG00000019931	ENSCVAG00000019976	ENSCVAG00000020029	ENSCVAG00000020090	irf5 (ENSCVAG00000020118)	tnpo3 (ENSCVAG00000020285)	rpl18a (ENSCVAG00000020360)	xpot (ENSCVAG00000020453)	ENSCVAG00000020489
Mummichog	MODERN SPECIES	2373	cradd (ENSFHEG00000011703)	socs2 (ENSFHEG00000011710)	FLNC (ENSFHEG00000011850)	ENSFHEG00000011857	ovch1 (ENSFHEG00000011871)	ENSFHEG00000011925	ENSFHEG00000011953	wnt16 (ENSFHEG00000011958)	ENSFHEG00000011962	ing3 (ENSFHEG00000012033)	tspan12 (ENSFHEG00000012042)	ENSFHEG00000012052	kcnd2 (ENSFHEG00000012076)	ENSFHEG00000012086	sco2 (ENSFHEG00000012099) #23	ncaph2 (ENSFHEG00000012107) #22	calua (ENSFHEG00000012115)	opn1sw1 (ENSFHEG00000012300)	opn1sw1 (ENSFHEG00000012792)	tnpo3 (ENSFHEG00000012859)	irf5 (ENSFHEG00000012870)	ENSFHEG00000012888	ENSFHEG00000012930	ENSFHEG00000013050	ENSFHEG00000013346	svopl (ENSFHEG00000013362)
Poeciliinae	ANCESTRAL SPECIES	57						ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000164581.A.a.b	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01010000222360.E.d	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00940000159122.h	ENSGT00530000063472.a.e	ENSGT00940000158632
Poecilia	ANCESTRAL SPECIES	95						ENSGT00390000014448	ENSGT00940000157983	ENSGT00940000153588.a.a.a	ENSGT00940000164581.A.a.b	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01010000222360.E.d	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a	ENSGT00940000160974.a	ENSGT00940000159122.h	ENSGT00530000063472.a.e	ENSGT00940000158632
NAME_6	ANCESTRAL SPECIES	447											ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22
Sailfin molly	MODERN SPECIES	3354															sco2 (ENSPLAG00000021386) #23	ncaph2 (ENSPLAG00000021400) #22	calua (ENSPLAG00000021406)	opn1sw1 (ENSPLAG00000021425)
Amazon molly	MODERN SPECIES	1069											wnt16 (ENSPFOG00000000258)	CPED1 (ENSPFOG00000000280)	ing3 (ENSPFOG00000022186)	tspan12 (ENSPFOG00000000326)	kcnd2 (ENSPFOG00000000361)	ENSPFOG00000000385 #22	eps8a (ENSPFOG00000000473)	eps8a (ENSPFOG00000000503)
Guppy	MODERN SPECIES		gpr19 (ENSPREG00000018866)	crebl2 (ENSPREG00000018876)	dusp16 (ENSPREG00000018898)	eps8a (ENSPREG00000018918)	kcnd2 (ENSPREG00000018943)	tspan12 (ENSPREG00000018966)	ing3 (ENSPREG00000018984)	wnt16 (ENSPREG00000019014)	ENSPREG00000019022	ENSPREG00000019047	parp12b (ENSPREG00000019105)	FLNC (ENSPREG00000019162)	socs2 (ENSPREG00000019251)	cradd (ENSPREG00000019284)	PTPRO (ENSPREG00000019338)	ncaph2 (ENSPREG00000019464) #22	sco2 (ENSPREG00000019483) #23	calua (ENSPREG00000019522)	opn1sw (ENSPREG00000019709)	tnpo3 (ENSPREG00000019847)	tnpo3 (ENSPREG00000000839)	irf5 (ENSPREG00000000909)	ENSPREG00000001046	ENSPREG00000001085	ENSPREG00000001116	ENSPREG00000001146	svopl (ENSPREG00000001219)
Aplocheiloidei	ANCESTRAL SPECIES	267																ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT01010000222360.E.d	ENSGT01030000234549.a.a.a.a.b	ENSGT00530000063347.B	ENSGT00940000159926	ENSGT00940000165748.a
Mangrove rivulus	MODERN SPECIES	626															ENSKMAG00000010362	ncaph2 (ENSKMAG00000010398) #22	sco2 (ENSKMAG00000010429) #23	calua (ENSKMAG00000010439)	opn1sw1 (ENSKMAG00000010455)	tnpo3 (ENSKMAG00000010497)	irf5 (ENSKMAG00000010547)	ENSKMAG00000010582
Oryzias	ANCESTRAL SPECIES	20								ENSGT00940000153588.a.a.a	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b.f	ENSGT00940000177211.a.a	ENSGT00940000156375	ENSGT00390000005529.b #16	ENSGT00940000153772.A	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926
Oryzias_b	ANCESTRAL SPECIES	19								ENSGT00940000153588.a.a.a	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00530000063472.a	ENSGT00940000158632	ENSGT00940000155580.b.a.b.f	ENSGT00940000177211.a.a	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000160974.a	ENSGT00940000165748.a	ENSGT00940000159926	ENSGT00530000063347.B	ENSGT01030000234549.a.a.a.a.b	ENSGT00940000157983
Indian medaka	MODERN SPECIES	2					ENSOMEG00000020166	FLNC (ENSOMEG00000020241)	ovch1 (ENSOMEG00000020287)	ENSOMEG00000020329	ENSOMEG00000020342	wnt16 (ENSOMEG00000020374)	CPED1 (ENSOMEG00000020429)	ing3 (ENSOMEG00000020463)	tspan12 (ENSOMEG00000020480)	kcnd2 (ENSOMEG00000020493)	sco2 (ENSOMEG00000000538) #23	ENSOMEG00000020540 #22	ENSOMEG00000020555	ENSOMEG00000020598	svopl (ENSOMEG00000020637)	ENSOMEG00000020672	ENSOMEG00000020692	lta4h (ENSOMEG00000020722)	gcc1 (ENSOMEG00000020737)	dennd6b (ENSOMEG00000020800) #16	zgc:77650 (ENSOMEG00000020821)	lamtor4 (ENSOMEG00000020846)	atp6v1f (ENSOMEG00000020862)	ENSOMEG00000020875	ENSOMEG00000020882	ENSOMEG00000020895	irf5 (ENSOMEG00000020932)
Javanese ricefish	MODERN SPECIES	15									msrb3 (ENSOJAG00000021696)	dera (ENSOJAG00000021578)	ENSOJAG00000020998	wnt16 (ENSOJAG00000020224)	ing3 (ENSOJAG00000020153)	tspan12 (ENSOJAG00000020118)	kcnd2 (ENSOJAG00000020108)	ncaph2 (ENSOJAG00000020095) #22	sco2 (ENSOJAG00000020090) #23	ENSOJAG00000020049	ENSOJAG00000019823	gcc1 (ENSOJAG00000019243)	ARF5 (ENSOJAG00000019186)	lamtor4 (ENSOJAG00000019170)	atp6v1f (ENSOJAG00000019162)	ENSOJAG00000019132	irf5 (ENSOJAG00000019090)	opn1sw1 (ENSOJAG00000018114)	socs2 (ENSOJAG00000018105)	cradd (ENSOJAG00000018099)	ARHGAP8 (ENSOJAG00000018087)	pdzrn4 (ENSOJAG00000018083)	gxylt1b (ENSOJAG00000018071)
Oryzias_a	ANCESTRAL SPECIES	188																ENSGT00390000014443 #22	ENSGT00390000004323.a #23
Japanese Medaka HdrR	MODERN SPECIES	15			ENSORLG00000019909	ovch1 (ENSORLG00000018277)	ENSORLG00000026269	ENSORLG00000028346	ENSORLG00000029421	wnt16 (ENSORLG00000018300)	CPED1 (ENSORLG00000025107)	ENSORLG00000023859	ing3 (ENSORLG00000023901)	ENSORLG00000022124	tspan12 (ENSORLG00000021979)	kcnd2 (ENSORLG00000021857)	sco2 (ENSORLG00000019958) #23	ncaph2 (ENSORLG00000019964) #22	ENSORLG00000024812	ENSORLG00000030249	ENSORLG00000029974	svopl (ENSORLG00000019435)	ENSORLG00000023456	ENSORLG00000021810	ENSORLG00000026478	ENSORLG00000026298	lta4h (ENSORLG00000020578)	dennd6b (ENSORLG00000020574) #16	gcc1 (ENSORLG00000022380)	arf5 (ENSORLG00000020571)	lamtor4 (ENSORLG00000019289)	atp6v1f (ENSORLG00000018592)	ENSORLG00000020114
Chinese medaka	MODERN SPECIES	4634																ENSOSIG00000002967 #22	sco2 (ENSOSIG00000002964) #23
Ovalentaria_B	ANCESTRAL SPECIES	42	ENSGT00390000005529.b #16	ENSGT00940000156375	ENSGT00940000155580.b.a.b.e.b	ENSGT00940000177211.a.b	ENSGT00940000155580.b.a.b.f	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365
Pomacentridae	ANCESTRAL SPECIES	75	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000158632	ENSGT00940000155580.b.a.b.f	ENSGT00940000177211.a.b	ENSGT00940000156375	ENSGT00530000063472.a	ENSGT00940000163017	ENSGT00940000156566.c.a	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b
Pomacentridae_A	ANCESTRAL SPECIES	59	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000158632	ENSGT00940000155580.b.a.b.f	ENSGT00940000177211.a.b	ENSGT00940000156375	ENSGT00530000063472.a	ENSGT00940000163017	ENSGT00940000156566.c.a	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000155241.c	ENSGT00550000074972	ENSGT00640000091554	ENSGT00730000111360.a	ENSGT00940000163342.b.a.c.a	ENSGT00440000033468	ENSGT00940000154256.ac	ENSGT00940000159490	ENSGT00940000156037.b
Amphiprion	ANCESTRAL SPECIES	77	ENSGT00940000156878.i.b.a.a	ENSGT00390000016053	ENSGT00390000013208	ENSGT00940000158632	ENSGT00940000155580.b.a.b.f	ENSGT00940000177211.a.b	ENSGT00940000156375	ENSGT00530000063472.a	ENSGT00940000163017	ENSGT00940000156566.c.a	ENSGT00940000157480	ENSGT01100000263527.b.b.a.a.b	ENSGT00940000156619	ENSGT00510000047764	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000155241.c	ENSGT00550000074972	ENSGT00640000091554	ENSGT00730000111360.a	ENSGT00940000163342.b.a.c.a	ENSGT00440000033468	ENSGT00940000154256.ac	ENSGT00940000159490	ENSGT00940000156037.b
Clown anemonefish	MODERN SPECIES	3473				plekha3 (ENSAOCG00000015315)	ZNF365 (ENSAOCG00000015333)	adob (ENSAOCG00000015344)	EGR2 (ENSAOCG00000015371)	kif11 (ENSAOCG00000002030)	ENSAOCG00000015425	ENSAOCG00000015439	ENSAOCG00000015458	slc22a15 (ENSAOCG00000015503)	ENSAOCG00000002411	tspan12 (ENSAOCG00000015547)	kcnd2 (ENSAOCG00000015567)	ncaph2 (ENSAOCG00000015579) #22	sco2 (ENSAOCG00000015595) #23
Orange clownfish	MODERN SPECIES	13	atp6v1f (ENSAPEG00000024605)	svopl (ENSAPEG00000024594)	ENSAPEG00000024588	ENSAPEG00000024586	ENSAPEG00000024582	lta4h (ENSAPEG00000024559)	ENSAPEG00000024545	ENSAPEG00000024525	ENSAPEG00000024520	ENSAPEG00000024512	wnt16 (ENSAPEG00000024504)	ENSAPEG00000024502	ing3 (ENSAPEG00000024493)	tspan12 (ENSAPEG00000024481)	kcnd2 (ENSAPEG00000024473)	ncaph2 (ENSAPEG00000024465) #22	sco2 (ENSAPEG00000024462) #23	ENSAPEG00000024451	FLNC (ENSAPEG00000024425)	socs2 (ENSAPEG00000024410)	ENSAPEG00000024406	PTPRO (ENSAPEG00000024366)	dennd6b (ENSAPEG00000024340) #16	ENSAPEG00000024335	irf5 (ENSAPEG00000024328)	tnpo3 (ENSAPEG00000024300)	opn1sw1 (ENSAPEG00000024262)	opn1sw1 (ENSAPEG00000024257)	calua (ENSAPEG00000024235)	ENSAPEG00000024229	ENSAPEG00000024223
Spiny chromis	MODERN SPECIES	784														tspan12 (ENSAPOG00000011197)	kcnd2 (ENSAPOG00000010980)	ncaph2 (ENSAPOG00000010958) #22	sco2 (ENSAPOG00000010931) #23	ENSAPOG00000010920	FLNC (ENSAPOG00000010876)	socs2 (ENSAPOG00000010716)	ENSAPOG00000010705
Bicolor damselfish	MODERN SPECIES	1573															ENSSPAG00000001385	ncaph2 (ENSSPAG00000001337) #22	sco2 (ENSSPAG00000001325) #23	ENSSPAG00000001240	FLNC (ENSSPAG00000001082)	socs2 (ENSSPAG00000001062)	ENSSPAG00000001056	PTPRO (ENSSPAG00000000965)
Cichlidae	ANCESTRAL SPECIES	63	ENSGT00940000156375	ENSGT00940000155580.b.a.b.e.b	ENSGT00940000163529	ENSGT00940000155580.b.a.b.e.a	ENSGT00940000158632	ENSGT00530000063472.a	ENSGT00940000164581.A.a.b	ENSGT00940000163017	ENSGT00940000156566.d	ENSGT00940000157480	ENSGT00390000015216	ENSGT00940000156619	ENSGT00510000047764	ENSGT01100000263483.E.b.b	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365
Pseudocrenilabrinae	ANCESTRAL SPECIES	23															ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT01100000263483.E.b.b.t	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	10	ENSGT00390000004933.k.a	ENSGT00390000015797	ENSGT00390000007890	ENSGT00940000155911	ENSGT00390000006670	ENSGT00390000004190	ENSGT00440000035348	ENSGT00940000161105	ENSGT00940000160758	ENSGT00940000164299.b.a.d	ENSGT00940000158576.b	ENSGT00940000161860	ENSGT00950000183089.c.b	ENSGT00940000179738	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566.d.t
Haplochromini	ANCESTRAL SPECIES	9	ENSGT00390000004933.k.a	ENSGT00390000015797	ENSGT00390000007890	ENSGT00940000155911	ENSGT00390000006670	ENSGT00390000004190	ENSGT00440000035348	ENSGT00940000161105	ENSGT00940000160758	ENSGT00940000164299.b.a.d	ENSGT00940000158576.b	ENSGT00940000161860	ENSGT00950000183089.c.b	ENSGT00940000179738	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000180874	ENSGT00940000157480
Haplochromini_A	ANCESTRAL SPECIES	9	ENSGT00390000002615	ENSGT00390000004933.k.a	ENSGT00390000015797	ENSGT00390000007890	ENSGT00940000155911	ENSGT00390000006670	ENSGT00390000004190	ENSGT00440000035348	ENSGT00940000161105	ENSGT00940000160758	ENSGT00940000158576.b	ENSGT00940000161860	ENSGT00950000183089.c.b	ENSGT00940000179738	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000180874	ENSGT00940000157480
Haplochromini_B	ANCESTRAL SPECIES	11	ENSGT00940000155911	ENSGT00390000006670	ENSGT00390000004190	ENSGT00440000035348	ENSGT00940000161105	ENSGT00940000160758	ENSGT00940000158576.b	ENSGT00940000161860	ENSGT00990000203553.c.a.a.b.a.a.b.a.a.b	ENSGT00940000156944.a.a	ENSGT01020000230360.d.f	ENSGT01100000263506.a.d.fb	ENSGT01100000263567.a.a.d.b.l	ENSGT00950000183089.c.b	ENSGT00940000155472.a.b.a.a	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000157983	ENSGT00390000014448	ENSGT00940000154814.b	ENSGT00940000156403.b	ENSGT00940000157164	ENSGT00390000005388	ENSGT00940000160365	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000180874	ENSGT00940000157480
Eastern happy	MODERN SPECIES	8	ENSACLG00000008466	rpl18a (ENSACLG00000008450)	xpot (ENSACLG00000008404)	rtcb (ENSACLG00000008367)	fbxo7 (ENSACLG00000008351)	kiaa0930 (ENSACLG00000008334)	nup50 (ENSACLG00000008324)	PHF21B (ENSACLG00000008319)	ARHGAP8 (ENSACLG00000008301)	ENSACLG00000007661	KCNA5 (ENSACLG00000007649)	ENSACLG00000007642	ENSACLG00000007594	si:ch73-368j24.12 (ENSACLG00000007578)	kcnd2 (ENSACLG00000007563)	ncaph2 (ENSACLG00000007091) #22	sco2 (ENSACLG00000007084) #23	ENSACLG00000007078	FLNC (ENSACLG00000007030)	socs2 (ENSACLG00000007022)	ENSACLG00000007016	PTPRO (ENSACLG00000006942)	eps8a (ENSACLG00000006856)	dusp16 (ENSACLG00000006831)	crebl2 (ENSACLG00000006824)	gpr19 (ENSACLG00000006815)	tspan12 (ENSACLG00000006802)	ing3 (ENSACLG00000006777)	wnt16 (ENSACLG00000006773)	stab2 (ENSACLG00000006733)	ENSACLG00000005937
Zebra mbuna	MODERN SPECIES	1099	xpot (ENSMZEG00005018955)	rtcb (ENSMZEG00005018942)	fbxo7 (ENSMZEG00005018936)	kiaa0930 (ENSMZEG00005018930)	nup50 (ENSMZEG00005018926)	ENSMZEG00005018921	PHF21B (ENSMZEG00005018911)	ARHGAP8 (ENSMZEG00005018894)	ENSMZEG00005018883	KCNA5 (ENSMZEG00005018878)	ENSMZEG00005018873	ENSMZEG00005018382	ENSMZEG00005018379	kcnd2 (ENSMZEG00005018374)	ENSMZEG00005018368	ncaph2 (ENSMZEG00005018364) #22	sco2 (ENSMZEG00005018361) #23	ENSMZEG00005018357	FLNC (ENSMZEG00005018342)	socs2 (ENSMZEG00005018335)	ENSMZEG00005018331	PTPRO (ENSMZEG00005018303)	eps8a (ENSMZEG00005018285)	dusp16 (ENSMZEG00005018278)	crebl2 (ENSMZEG00005018274)	gpr19 (ENSMZEG00005018269)	tspan12 (ENSMZEG00005018266)	ing3 (ENSMZEG00005018257)	CPED1 (ENSMZEG00005018247)	ENSMZEG00005018241	wnt16 (ENSMZEG00005018238)
Burton s mouthbrooder	MODERN SPECIES	487		f13a1b (ENSHBUG00000003951)	ENSHBUG00000003905	ENSHBUG00000003892	tex261 (ENSHBUG00000003871)	ENSHBUG00000003856	vax2 (ENSHBUG00000003841)	ADISSP (ENSHBUG00000003829)	KCNA1 (ENSHBUG00000003814)	KCNA5 (ENSHBUG00000003804)	ENSHBUG00000003796	H4C15 (ENSHBUG00000003790)	ENSHBUG00000003783	histh1l1 (ENSHBUG00000003743)	kcnd2 (ENSHBUG00000003729)	ncaph2 (ENSHBUG00000003702) #22	sco2 (ENSHBUG00000003685) #23	ENSHBUG00000003680	FLNC (ENSHBUG00000003663)	socs2 (ENSHBUG00000003594)	ENSHBUG00000000082	ENSHBUG00000003575	eps8a (ENSHBUG00000000077)	dusp16 (ENSHBUG00000003506)	crebl2 (ENSHBUG00000003492)	gpr19 (ENSHBUG00000003485)	tspan12 (ENSHBUG00000003477)	ing3 (ENSHBUG00000003451)	CPED1 (ENSHBUG00000003418)	ENSHBUG00000003402	wnt16 (ENSHBUG00000003395)
Nile tilapia	MODERN SPECIES	8	rtcb (ENSONIG00000007474)	fbxo7 (ENSONIG00000007479)	kiaa0930 (ENSONIG00000007482)	nup50 (ENSONIG00000007489)	PHF21B (ENSONIG00000041576)	ARHGAP8 (ENSONIG00000007499)	ENSONIG00000020770	KCNA1 (ENSONIG00000020771)	KCNA5 (ENSONIG00000020772)	ENSONIG00000031263	ENSONIG00000020768	ENSONIG00000040068	ENSONIG00000007504	kcnd2 (ENSONIG00000040524)	ENSONIG00000039312	ncaph2 (ENSONIG00000007505) #22	sco2 (ENSONIG00000007516) #23	ENSONIG00000007517	FLNC (ENSONIG00000007519)	socs2 (ENSONIG00000007523)	cradd (ENSONIG00000007525)	PTPRO (ENSONIG00000007528)	eps8a (ENSONIG00000007534)	ENSONIG00000037215	dusp16 (ENSONIG00000007543)	crebl2 (ENSONIG00000007545)	gpr19 (ENSONIG00000020773)	ENSONIG00000042373	ENSONIG00000018710	ENSONIG00000018711	ENSONIG00000035088
Midas cichlid	MODERN SPECIES	1105								ENSACIG00000004940	ovch1 (ENSACIG00000004844)	stab2 (ENSACIG00000004189)	wnt16 (ENSACIG00000004104)	ing3 (ENSACIG00000004072)	tspan12 (ENSACIG00000004049)	ENSACIG00000004040	kcnd2 (ENSACIG00000004023)	ncaph2 (ENSACIG00000003973) #22	sco2 (ENSACIG00000003963) #23	ENSACIG00000003952	ENSACIG00000003946
Tiger tail seahorse	MODERN SPECIES	472	PHF21B (ENSHCOG00000006677)	nup50 (ENSHCOG00000006666)	kiaa0930 (ENSHCOG00000006638)	fbxo7 (ENSHCOG00000006599)	rtcb (ENSHCOG00000006450)	xpot (ENSHCOG00000006415)	rpl18a (ENSHCOG00000006361)	KCNA1 (ENSHCOG00000006347)	KCNA5 (ENSHCOG00000006337)	ENSHCOG00000006332	ENSHCOG00000006323	ENSHCOG00000006304	rab21 (ENSHCOG00000006297)	ENSHCOG00000006272	cradd (ENSHCOG00000006256)	ENSHCOG00000006253 #22	sco2 (ENSHCOG00000006241) #23	dclre1c (ENSHCOG00000006196)	cpm (ENSHCOG00000006187)	ENSHCOG00000006176	TRHDE (ENSHCOG00000006167)	ENSHCOG00000006117	ENSHCOG00000006108	ENSHCOG00000006087	ENSHCOG00000006064	dyrk2 (ENSHCOG00000006050)	ENSHCOG00000006019	ENSHCOG00000006013	ENSHCOG00000006005	cand1 (ENSHCOG00000005985)	usp6nl (ENSHCOG00000005967)
Pinecone sodierfish	MODERN SPECIES	15	rtcb (ENSMMDG00005012697)	xpot (ENSMMDG00005012700)	rpl18a (ENSMMDG00005013443)	pthlha (ENSMMDG00005013481)	C11orf98 (ENSMMDG00005013483)	ENSMMDG00005013484	lrp6 (ENSMMDG00005013515)	tbk1 (ENSMMDG00005014700)	gpr19 (ENSMMDG00005014825)	crebl2 (ENSMMDG00005014829)	dusp16 (ENSMMDG00005014835)	eps8a (ENSMMDG00005014850)	PTPRO (ENSMMDG00005014901)	cradd (ENSMMDG00005015092)	socs2 (ENSMMDG00005015094)	ncaph2 (ENSMMDG00005015098) #22	sco2 (ENSMMDG00005015102) #23	FLNC (ENSMMDG00005015121)	kcnd2 (ENSMMDG00005015324)	tspan12 (ENSMMDG00005015326)	ing3 (ENSMMDG00005015329)	wnt16 (ENSMMDG00005015331)	ENSMMDG00005015334	stab2 (ENSMMDG00005015349)	ENSMMDG00005015593	ovch1 (ENSMMDG00005015598)	ENSMMDG00005015601	kcnj8 (ENSMMDG00005015602)	abcc9 (ENSMMDG00005015623)	plxnb2a.1 (ENSMMDG00005016350) #15	dclre1c (ENSMMDG00005016641)
Cod	MODERN SPECIES	17	ENSGMOG00000018888	ENSGMOG00000018907	ENSGMOG00000032878	ENSGMOG00000036239	ENSGMOG00000025545	ENSGMOG00000029050	ENSGMOG00000016937	TBK1 (ENSGMOG00000016984)	gpr19 (ENSGMOG00000029230)	crebl2 (ENSGMOG00000017023)	dusp16 (ENSGMOG00000025213)	ENSGMOG00000006062	ENSGMOG00000006093	cradd (ENSGMOG00000010443)	socs2 (ENSGMOG00000025287)	ncaph2 (ENSGMOG00000003228) #22	sco2 (ENSGMOG00000003285) #23	ntn4 (ENSGMOG00000009327)	ENSGMOG00000007741	amdhd1 (ENSGMOG00000007738)	pah (ENSGMOG00000001263)	th2 (ENSGMOG00000001233)	nup37 (ENSGMOG00000001219)	parpbp (ENSGMOG00000001191)	IGF1 (ENSGMOG00000030090)	ENSGMOG00000001151	btbd11a (ENSGMOG00000001108)	ENSGMOG00000001088	tnnt2c (ENSGMOG00000001076)	ENSGMOG00000003257	ENSGMOG00000010347
Protacanthopterygii	ANCESTRAL SPECIES	10	ENSGT00530000063808.b	ENSGT00390000007134	ENSGT00390000011492.a	ENSGT00390000001775.B	ENSGT00940000155834.i.a	ENSGT00940000157129.f.b	ENSGT00940000164702.a	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b ##15	ENSGT00940000166426	ENSGT00940000161090.B.c.b.a.b	ENSGT00940000161090.B.c.a.a	ENSGT01050000244850.A.a.o.b	ENSGT00390000014448	ENSGT00940000157983	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00940000159122.h	ENSGT00940000153588.a.a.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764	ENSGT00940000156619	ENSGT00390000015216	ENSGT00940000157480	ENSGT00940000156566	ENSGT00530000063702.a.b #21	ENSGT00940000163017	ENSGT00940000158027	ENSGT00940000158848	ENSGT00940000153438.b	ENSGT00390000006485.c.sc
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	378	ENSGT00390000007134.f	ENSGT00390000011492.a.a	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000164702.a.i	ENSGT00940000154003.A	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd ##15	ENSGT01050000244850.A.a.o.b.d	ENSGT00390000014448.r	ENSGT00940000157983.`b.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.a ##15	ENSGT00390000014448.q.a	ENSGT00940000157983.`b.a	ENSGT00390000014443.e #22	ENSGT00390000004323.a.c.b #23	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764.d	ENSGT00940000156619.d	ENSGT00390000015216.`b	ENSGT00390000014443.f #22	ENSGT00390000004323.a.c.a #23
Salmoninae_a	ANCESTRAL SPECIES	11	ENSGT00940000156776.d.b.b.a.b	ENSGT00390000014429.b.e	ENSGT00530000063808.b.n	ENSGT00390000011492.a.b	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd ##15	ENSGT01050000244850.A.a.o.b.d	ENSGT00390000014448.r	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.a ##15	ENSGT00390000014448.q.a	ENSGT00940000157983.`b.a	ENSGT00390000014443.e #22	ENSGT00390000004323.a.c.a #23	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b	ENSGT00510000047764.d	ENSGT00940000156619.d	ENSGT00390000015216.`b	ENSGT00940000157480.b	ENSGT00530000063702.a.b.e #21	ENSGT00940000163017.a.a	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c	ENSGT00940000153678.a.a.c	ENSGT00390000006760
Salmo	ANCESTRAL SPECIES	46	ENSGT00940000156776.d.b.b.a.b	ENSGT00390000014429.b.e	ENSGT00530000063808.b.n.b	ENSGT00530000063808.b.n.a	ENSGT00390000010760.e.b.a.b	ENSGT00390000007134.f	ENSGT00390000011492.a.a.b	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.a ##15	ENSGT00390000014448.q.a	ENSGT00940000157983.`b.a	ENSGT00390000014443.e #22	ENSGT00390000004323.a.c.a #23	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b	ENSGT00510000047764.d	ENSGT00940000156619.d	ENSGT00390000015216.`b	ENSGT00940000157480.b	ENSGT00530000063702.a.b.e #21	ENSGT00940000163017.a.a	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.b.a	ENSGT00940000158027.r	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c
Atlantic salmon	MODERN SPECIES	8	ucmaa (ENSSSAG00000086626)	phyh (ENSSSAG00000102646)	cdk17 (ENSSSAG00000082189)	ENSSSAG00000117100	ENSSSAG00000103330	ucmaa (ENSSSAG00000114126)	ENSSSAG00000085247	cdk17 (ENSSSAG00000102249)	ENSSSAG00000095103	ENSSSAG00000092031	CEP83 (ENSSSAG00000073067)	ENSSSAG00000050582 ##15	cradd (ENSSSAG00000084503)	socs2 (ENSSSAG00000073047)	sco2 (ENSSSAG00000096017) #23	ncaph2 (ENSSSAG00000073043) #22	ENSSSAG00000073033	ENSSSAG00000066886	kcnd2 (ENSSSAG00000066605)	tspan12 (ENSSSAG00000066598)	ing3 (ENSSSAG00000066577)	CPED1 (ENSSSAG00000066561)	wnt16 (ENSSSAG00000066553)	lmf2b (ENSSSAG00000066543) #21	ovch1 (ENSSSAG00000066534)	ENSSSAG00000066524	TMTC1 (ENSSSAG00000066480)	ipo8 (ENSSSAG00000066083)	caprin2 (ENSSSAG00000066057)	ENSSSAG00000066045	ENSSSAG00000092352
Oncorhynchus	ANCESTRAL SPECIES	22	ENSGT00940000154045.a.c	ENSGT00390000003057.c.a	ENSGT00940000156776.d.b.b.a.b	ENSGT00390000014429.b.e	ENSGT00530000063808.b.n	ENSGT00390000011492.a.b	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd ##15	ENSGT01050000244850.A.a.o.b.d	ENSGT00390000014448.r	ENSGT00940000157983.`b.a	ENSGT00390000014443.e #22	ENSGT00390000004323.a.c.a #23	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b	ENSGT00510000047764.d	ENSGT00940000156619.d	ENSGT00390000015216.`b	ENSGT00940000157480.b	ENSGT00530000063702.a.b.e #21	ENSGT00940000163017.a.a	ENSGT00940000158027.t.a	ENSGT00940000158027.s	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c
Oncorhynchus_a	ANCESTRAL SPECIES	31	ENSGT00990000206164.A	ENSGT00940000154045.a.c	ENSGT00390000003057.c.a	ENSGT00940000156776.d.b.b.a.b	ENSGT00390000014429.b.e	ENSGT00530000063808.b.n	ENSGT00390000011492.a.b	ENSGT00390000001775.B.y	ENSGT00940000155834.i.a.b	ENSGT00940000157129.f.b.c	ENSGT00940000164702.a.j	ENSGT00940000154003.A.k	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd ##15	ENSGT01050000244850.A.a.o.b.d	ENSGT00940000157983.`b.a	ENSGT00390000014443.e #22	ENSGT00390000004323.a.c.a #23	ENSGT00940000159122.h.c	ENSGT00940000153588.a.a.a.m.b	ENSGT00940000155472.a.b.a.a.b	ENSGT00510000047764.d	ENSGT00940000156619.d	ENSGT00390000015216.`b	ENSGT00940000157480.b	ENSGT00530000063702.a.b.e #21	ENSGT00940000163017.a.a	ENSGT00940000158027.t.a	ENSGT00940000158027.s	ENSGT00940000158848.d.a	ENSGT00940000153438.b.d	ENSGT00390000006485.c.sc.c
Chinook salmon	MODERN SPECIES	8	ENSOTSG00005012759	camk1da (ENSOTSG00005010925)	ccdc3a (ENSOTSG00005010920)	ENSOTSG00005010919	ENSOTSG00005010918	optn (ENSOTSG00005010916)	ucmaa (ENSOTSG00005010913)	phyh (ENSOTSG00005010911)	ENSOTSG00005010910	cdk17 (ENSOTSG00005010849)	ELK3 (ENSOTSG00005010845)	hcfc2 (ENSOTSG00005010843)	CEP83 (ENSOTSG00005010842)	ENSOTSG00005010840 ##15	socs2 (ENSOTSG00005010839)	ncaph2 (ENSOTSG00005010837) #22	sco2 (ENSOTSG00005010836) #23	ENSOTSG00005010834	FLNC (ENSOTSG00005009161)	ELFN2 (ENSOTSG00005009153)	ELFN2 (ENSOTSG00005009152)	ENSOTSG00005009151	kcnd2 (ENSOTSG00005009150)	tspan12 (ENSOTSG00005009148)	ing3 (ENSOTSG00005009142)	ENSOTSG00005009135	wnt16 (ENSOTSG00005009134)	lmf2b (ENSOTSG00005009132) #21	ovch1 (ENSOTSG00005009130)	ENSOTSG00005009129	TMTC1 (ENSOTSG00005009127)
Huchen	MODERN SPECIES	1907														ENSHHUG00000004068	socs2 (ENSHHUG00000004052)	ncaph2 (ENSHHUG00000004038) #22	sco2 (ENSHHUG00000004033) #23	ENSHHUG00000003999	FLNC (ENSHHUG00000003333)
Salmoninae	ANCESTRAL SPECIES	378	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.qd ##15	ENSGT01050000244850.A.a.o.b.d	ENSGT00390000014448.r	ENSGT00940000157983.`b.b	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.a ##15	ENSGT00390000014448.q.a	ENSGT00940000157983.`b.a	ENSGT00390000014443.e #22	ENSGT00390000004323.a.c.b #23	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a	ENSGT00510000047764.d	ENSGT00940000156619.d	ENSGT00390000015216.`b	ENSGT00390000014443.f #22	ENSGT00390000004323.a.c.a #23
Salmoninae_a	ANCESTRAL SPECIES	75	ENSGT00390000003057.d	ENSGT00940000156776.d.b.b.a.a	ENSGT00390000014429.b.f	ENSGT00530000063808.b.m	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.b ##15	ENSGT00390000014448.q.b	ENSGT00940000157983.`b.b	ENSGT00390000014443.f #22	ENSGT00390000004323.a.c.b #23	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a	ENSGT00510000047764.c.b	ENSGT00510000047764.c.a.a	ENSGT00940000156619.c	ENSGT00390000015216.ab	ENSGT00940000157480.a	ENSGT00940000156566	ENSGT00530000063702.a.b.f #21	ENSGT00940000163017.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158027	ENSGT00940000158848.d.b
Salmo	ANCESTRAL SPECIES	25	ENSGT00390000003057.c.b	ENSGT00940000156776.d.b.b.a.a	ENSGT00390000014429.b.f	ENSGT00530000063808.b.m	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01020000230394.e.a.a.b.a.a.b.a.b.pd.a.b ##15	ENSGT00390000014448.q.b	ENSGT00940000157983.`b.b	ENSGT00390000014443.f #22	ENSGT00390000004323.a.c.b #23	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a	ENSGT00510000047764.c.b	ENSGT00940000156619.c	ENSGT00390000015216.ab	ENSGT00940000157480.a	ENSGT00940000156566	ENSGT00530000063702.a.b.f #21	ENSGT00940000163017.a.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158027.q	ENSGT00940000158848.d.b	ENSGT00940000153438.b.c
River trout	MODERN SPECIES	38	ccdc3a (ENSSTUG00000013537)	optn (ENSSTUG00000013531)	ENSSTUG00000013527	mcm10 (ENSSTUG00000013255)	ucmaa (ENSSTUG00000013237)	phyh (ENSSTUG00000013213)	cdk17 (ENSSTUG00000011668)	ENSSTUG00000011624	ELK3 (ENSSTUG00000011620)	hcfc2 (ENSSTUG00000011609)	hcfc2 (ENSSTUG00000011586)	CEP83 (ENSSTUG00000011502)	ENSSTUG00000011483 ##15	cradd (ENSSTUG00000011470)	socs2 (ENSSTUG00000011458)	ncaph2 (ENSSTUG00000011434) #22	sco2 (ENSSTUG00000011414) #23	ENSSTUG00000011377	FLNC (ENSSTUG00000010279)	kcnd2 (ENSSTUG00000010222)	tspan12 (ENSSTUG00000010204)	ing3 (ENSSTUG00000010176)	CPED1 (ENSSTUG00000010156)	wnt16 (ENSSTUG00000010146)	stab2 (ENSSTUG00000007625)	lmf2b (ENSSTUG00000007454) #21	ovch1 (ENSSTUG00000007440)	ENSSTUG00000007435	TMTC1 (ENSSTUG00000007098)	ipo8 (ENSSTUG00000006855)	caprin2 (ENSSTUG00000006828)
Atlantic salmon	MODERN SPECIES	26	nudt5 (ENSSSAG00000057739)	cdc123 (ENSSSAG00000057708)	camk1da (ENSSSAG00000054122)	optn (ENSSSAG00000121606)	ccdc3a (ENSSSAG00000053999)	mcm10 (ENSSSAG00000053979)	ucmaa (ENSSSAG00000053968)	phyh (ENSSSAG00000053964)	cdk17 (ENSSSAG00000073164)	ENSSSAG00000115537	ENSSSAG00000050756	CEP83 (ENSSSAG00000050654)	ENSSSAG00000098082 ##15	socs2 (ENSSSAG00000091709)	sco2 (ENSSSAG00000092263) #23	ENSSSAG00000050529 #22	ENSSSAG00000050488	ENSSSAG00000046597	kcnd2 (ENSSSAG00000046267)	tspan12 (ENSSSAG00000081986)	ing3 (ENSSSAG00000046181)	CPED1 (ENSSSAG00000046171)	wnt16 (ENSSSAG00000090697)	stab2 (ENSSSAG00000045007)	lmf2b (ENSSSAG00000044688) #21	ovch1 (ENSSSAG00000044656)	ENSSSAG00000102149	TMTC1 (ENSSSAG00000044469)	ipo8 (ENSSSAG00000043974)	caprin2 (ENSSSAG00000043923)	ENSSSAG00000084869
Oncorhynchus	ANCESTRAL SPECIES	9	ENSGT00940000154045.a.d	ENSGT00390000003057.d	ENSGT00940000156776.d.b.b.a.a	ENSGT00390000014429.b.f	ENSGT00530000063808.b.m	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01050000244850.A.a.o.b.c	ENSGT00940000157983.`b.b	ENSGT00390000014443.f #22	ENSGT00390000004323.a.c.b #23	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a	ENSGT00510000047764.c.a.a	ENSGT00940000156619.c	ENSGT00390000015216.ab	ENSGT00940000157480.a	ENSGT00940000156566	ENSGT00530000063702.a.b.f #21	ENSGT00940000163017.a.b	ENSGT00940000158027.t.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158848.d.b	ENSGT00940000153438.b.c
Oncorhynchus_a	ANCESTRAL SPECIES	16	ENSGT00390000003057.c.b	ENSGT00940000156776.d.b.b.b	ENSGT00390000014429.b.f	ENSGT00530000063808.b.m	ENSGT00390000010760.e.b.b	ENSGT00390000007134.e	ENSGT00390000011492.a.a	ENSGT00390000001775.B.z	ENSGT00940000155834.i.a.a	ENSGT00940000157129.f.b.d	ENSGT00940000164702.a.i	ENSGT00940000154003.A.l	ENSGT01050000244850.A.a.o.b.c	ENSGT00390000014448.r	ENSGT00940000157983.`b.b	ENSGT00390000014443.f #22	ENSGT00940000159122.h.d	ENSGT00940000153588.a.a.a.m.a	ENSGT00940000155472.a.b.a.a.a	ENSGT00510000047764.c.a.a	ENSGT00940000156619.c	ENSGT00390000015216.ab	ENSGT00940000157480.a	ENSGT00940000156566	ENSGT00530000063702.a.b.f #21	ENSGT00940000163017.a.b	ENSGT00940000158027.t.b	ENSGT01040000240385.A.b.b.a.b.a.a.a.a.a.a.a.a.a	ENSGT00940000158848.d.b	ENSGT00940000153438.b.c	ENSGT00390000006485.c.sc.d
Chinook salmon	MODERN SPECIES	6	camk1da (ENSOTSG00005018476)	ccdc3a (ENSOTSG00005018477)	optn (ENSOTSG00005018482)	ENSOTSG00005018484	mcm10 (ENSOTSG00005018490)	ucmaa (ENSOTSG00005018519)	phyh (ENSOTSG00005018522)	cdk17 (ENSOTSG00005018538)	ELK3 (ENSOTSG00005019785)	hcfc2 (ENSOTSG00005019786)	CEP83 (ENSOTSG00005019788)	ENSOTSG00005019791 ##15	ENSOTSG00005019793	cradd (ENSOTSG00005019795)	socs2 (ENSOTSG00005019796)	ncaph2 (ENSOTSG00005002070) #22	ENSOTSG00005002075	FLNC (ENSOTSG00005002281)	kcnd2 (ENSOTSG00005012035)	tspan12 (ENSOTSG00005012036)	ing3 (ENSOTSG00005012041)	CPED1 (ENSOTSG00005012068)	wnt16 (ENSOTSG00005012071)	stab2 (ENSOTSG00005012081)	lmf2b (ENSOTSG00005012241) #21	ovch1 (ENSOTSG00005012267)	TMTC1 (ENSOTSG00005012269)	ENSOTSG00005012270	ipo8 (ENSOTSG00005012285)	caprin2 (ENSOTSG00005012459)	sinhcaf (ENSOTSG00005012461)
Coho salmon	MODERN SPECIES	29	nudt5 (ENSOKIG00005005485)	cdc123 (ENSOKIG00005005525)	ENSOKIG00005005691	ccdc3a (ENSOKIG00005006045)	optn (ENSOKIG00005006057)	ENSOKIG00005006068	mcm10 (ENSOKIG00005006093)	PHYH (ENSOKIG00005006307)	cdk17 (ENSOKIG00005006347)	ELK3 (ENSOKIG00005006569)	hcfc2 (ENSOKIG00005006594)	ENSOKIG00005006634	ENSOKIG00005007138	cradd (ENSOKIG00005007214)	socs2 (ENSOKIG00005007218)	ncaph2 (ENSOKIG00005007230) #22	ENSOKIG00005007254	FLNC (ENSOKIG00005007362)	kcnd2 (ENSOKIG00005008748)	tspan12 (ENSOKIG00005008768)	ing3 (ENSOKIG00005008783)	CPED1 (ENSOKIG00005008811)	wnt16 (ENSOKIG00005008834)	stab2 (ENSOKIG00005008963)	lmf2b (ENSOKIG00005010030) #21	ovch1 (ENSOKIG00005010064)	TMTC1 (ENSOKIG00005010111)	ENSOKIG00005010525	ipo8 (ENSOKIG00005010552)	caprin2 (ENSOKIG00005010624)	sinhcaf (ENSOKIG00005010636)
Rainbow trout	MODERN SPECIES	13	cdc123 (ENSOMYG00000038066)	camk1da (ENSOMYG00000038103)	ccdc3a (ENSOMYG00000038131)	optn (ENSOMYG00000038144)	ENSOMYG00000036030	mcm10 (ENSOMYG00000038156)	ENSOMYG00000038162	PHYH (ENSOMYG00000038226)	cdk17 (ENSOMYG00000038585)	ENSOMYG00000038685	ENSOMYG00000038695	ENSOMYG00000038721	ENSOMYG00000038759	cradd (ENSOMYG00000038792)	SOCS2a2 (ENSOMYG00000058535)	ncaph2 (ENSOMYG00000035152) #22	sco2 (ENSOMYG00000035171) #23	ENSOMYG00000064525	ENSOMYG00000035855	ENSOMYG00000074324	ENSOMYG00000040476	kcnd2 (ENSOMYG00000040483)	ENSOMYG00000066878	tspan12 (ENSOMYG00000040497)	ing3 (ENSOMYG00000040519)	CPED1 (ENSOMYG00000040539)	wnt16 (ENSOMYG00000040551)	stab2 (ENSOMYG00000040741)	lmf2b (ENSOMYG00000041354) #21	ovch1 (ENSOMYG00000041382)	TMTC1 (ENSOMYG00000041406)
Huchen	MODERN SPECIES	2582									cdk17 (ENSHHUG00000003779)	ELK3 (ENSHHUG00000004200)	hcfc2 (ENSHHUG00000004207)	ENSHHUG00000004226	ENSHHUG00000004238	cradd (ENSHHUG00000004246)	socs2 (ENSHHUG00000004251)	ncaph2 (ENSHHUG00000004272) #22	sco2 (ENSHHUG00000004285) #23
Northern pike	MODERN SPECIES	22	camk1da (ENSELUG00000006665)	ccdc3a (ENSELUG00000006689)	optn (ENSELUG00000006704)	mcm10 (ENSELUG00000006765)	ENSELUG00000026506	ucmaa (ENSELUG00000006785)	phyh (ENSELUG00000001133)	cdk17 (ENSELUG00000006881)	ELK3 (ENSELUG00000006922)	hcfc2 (ENSELUG00000006965)	ENSELUG00000006997	ENSELUG00000007354	ENSELUG00000025445	cradd (ENSELUG00000007467)	socs2 (ENSELUG00000030544)	ncaph2 (ENSELUG00000001341) #22	sco2 (ENSELUG00000007587) #23	ENSELUG00000007613	btbd11a (ENSELUG00000001508)	shisal1a (ENSELUG00000007707)	ENSELUG00000001134	ENSELUG00000025751	ENSELUG00000026492	cdpf1 (ENSELUG00000030088)	cdkn1ba (ENSELUG00000007811)	pparaa (ENSELUG00000007870)	ENSELUG00000007904	atxn10 (ENSELUG00000007937)	ENSELUG00000008077	ENSELUG00000008160	ENSELUG00000008278
Spotted gar	MODERN SPECIES	674	CCDC38 (ENSLOCG00000015742)	snrpf (ENSLOCG00000015744)	ntn4 (ENSLOCG00000015745)	usp44 (ENSLOCG00000015748)	metap2b (ENSLOCG00000015749)	ENSLOCG00000015751	vezt (ENSLOCG00000015752)	fgd6 (ENSLOCG00000015755)	nr2c1 (ENSLOCG00000015757)	tmcc3 (ENSLOCG00000015758)	hal (ENSLOCG00000015759)	CEP83 (ENSLOCG00000015765)	PLXNC1 (ENSLOCG00000015767) ##15	cradd (ENSLOCG00000015772)	socs2 (ENSLOCG00000015773)	ncaph2 (ENSLOCG00000015775) #22	sco2 (ENSLOCG00000017903) #23	ENSLOCG00000015776	ENSLOCG00000015779	FLNC (ENSLOCG00000015781)	ENSLOCG00000015789	tspan12 (ENSLOCG00000015791)	ing3 (ENSLOCG00000015792)	ENSLOCG00000015794	CPED1 (ENSLOCG00000015795)	ENSLOCG00000015797	wnt16 (ENSLOCG00000015799)	fam3c (ENSLOCG00000015800)	ENSLOCG00000015801	cbll1 (ENSLOCG00000015804)	slc26a3.1 (ENSLOCG00000015805)
Reedfish	MODERN SPECIES		elk3 (ENSECRG00000006976)	lta4h (ENSECRG00000006961)	amdhd1 (ENSECRG00000006944)	hal (ENSECRG00000006929)	ntn4 (ENSECRG00000006909)	usp44 (ENSECRG00000006899)	metap2b (ENSECRG00000006884)	vezt (ENSECRG00000006867)	fgd6 (ENSECRG00000006846)	nr2c1 (ENSECRG00000006803)	ndufa12 (ENSECRG00000006791)	CEP83 (ENSECRG00000006774)	PLXNC1 (ENSECRG00000006751) ##15	cradd (ENSECRG00000006747)	socs2 (ENSECRG00000006741)	ncaph2 (ENSECRG00000006729) #22	sco2 (ENSECRG00000006718) #23	ENSECRG00000006701	FLNC (ENSECRG00000005679)	ENSECRG00000005462	tspan12 (ENSECRG00000005443)	ing3 (ENSECRG00000005419)	wnt16 (ENSECRG00000005399)	fam3c (ENSECRG00000005387)	ENSECRG00000005357	cbll1 (ENSECRG00000005325)	slc26a3.2 (ENSECRG00000003681)	slc26a4 (ENSECRG00000003515)	bcap29 (ENSECRG00000003504)	dus4l (ENSECRG00000003491)	ENSECRG00000003480