Mus	ANCESTRAL SPECIES	11	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443 #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480 #26	ENSGT00390000009978 #27	ENSGT01060000248595.b.a.a #28	ENSGT00950000182939.a.b.a #29	ENSGT00860000136149 #30	ENSGT00940000160461 #31	ENSGT00940000157610 #32	ENSGT00940000153561.b.b #33	ENSGT00940000162430 #34	ENSGT00940000156551 #35	ENSGT00940000158899 #36	ENSGT00390000012906 #37
Shrew mouse	MODERN SPECIES	8	Mov10l1 (MGP_PahariEiJ_G0020153) #7	Panx2 (MGP_PahariEiJ_G0020154) #8	Trabd (MGP_PahariEiJ_G0020155) #9	Selenoo (MGP_PahariEiJ_G0020156) #10	Tubgcp6 (MGP_PahariEiJ_G0020157) #11	Hdac10 (MGP_PahariEiJ_G0020158) #12	Mapk12 (MGP_PahariEiJ_G0020159) #13	Mapk11 (MGP_PahariEiJ_G0020160) #14	Plxnb2 (MGP_PahariEiJ_G0020161) #15	Dennd6b (MGP_PahariEiJ_G0020162) #16	Ppp6r2 (MGP_PahariEiJ_G0020163) #17	Sbf1 (MGP_PahariEiJ_G0020164) #18	Adm2 (MGP_PahariEiJ_G0020165) #19	Miox (MGP_PahariEiJ_G0020166) #20	Lmf2 (MGP_PahariEiJ_G0020167) #21	Ncaph2 (MGP_PahariEiJ_G0020168) #22	Sco2 (MGP_PahariEiJ_G0020169) #23	Tymp (MGP_PahariEiJ_G0020170) #24	Odf3b (MGP_PahariEiJ_G0020171) #25	MGP_PahariEiJ_G0020172 #26	Syce3 (MGP_PahariEiJ_G0020173) #27	Cpt1b (MGP_PahariEiJ_G0020175) #28	Chkb (MGP_PahariEiJ_G0020174) #29	MGP_PahariEiJ_G0020176 #30	Mapk8ip2 (MGP_PahariEiJ_G0020177) #31	Arsa (MGP_PahariEiJ_G0020178) #32	Shank3 (MGP_PahariEiJ_G0020179) #33	Acr (MGP_PahariEiJ_G0020180) #34	Rabl2 (MGP_PahariEiJ_G0020181) #35	Syt10 (MGP_PahariEiJ_G0020182) #36	Alg10b (MGP_PahariEiJ_G0020183) #37
Mus_A	DUPLICATION
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443.k #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480 #26	ENSGT00390000009978 #27	ENSGT01060000248595.b.a.a #28	ENSGT00950000182939.a.b.a #29	ENSGT00860000136149 #30	ENSGT00940000160461 #31	ENSGT00940000157610 #32	ENSGT00940000153561.b.b #33	ENSGT00940000162430 #34	ENSGT00940000156551 #35	ENSGT00940000158899 #36	ENSGT00390000012906 #37
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443.k #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480 #26	ENSGT00390000009978 #27	ENSGT01060000248595.b.a.a #28	ENSGT00950000182939.a.b.a #29	ENSGT00860000136149 #30	ENSGT00940000160461 #31	ENSGT00940000157610 #32	ENSGT00940000153561.b.b #33	ENSGT00940000162430 #34	ENSGT00940000156551 #35	ENSGT00940000158899 #36	ENSGT00390000012906 #37
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000160150 #7	ENSGT00940000153972.C #8	ENSGT00390000009067 #9	ENSGT00390000005508.a #10	ENSGT00940000157810 #11	ENSGT00940000160061 #12	ENSGT00940000156189 #13	ENSGT00940000160790 #14	ENSGT01020000230394.e.a.a.a #15	ENSGT00390000005529.b #16	ENSGT00390000009899.b #17	ENSGT00940000155263 #18	ENSGT00940000154380.a #19	ENSGT00390000016211 #20	ENSGT00530000063702.a #21	ENSGT00390000014443.k #22	ENSGT00390000004323.a #23	ENSGT00390000009250 #24	ENSGT00940000161995 #25	ENSGT00940000163480 #26	ENSGT00390000009978 #27	ENSGT01060000248595.b.a.a #28	ENSGT00950000182939.a.b.a #29	ENSGT00860000136149 #30	ENSGT00940000160461 #31	ENSGT00940000157610 #32	ENSGT00940000153561.b.b #33	ENSGT00940000162430 #34	ENSGT00940000156551 #35	ENSGT00940000158899 #36	ENSGT00390000012906 #37
Steppe mouse	MODERN SPECIES	3375	Mlc1 (ENSMSIG00000021277)	Mov10l1 (ENSMSIG00000021302) #7	Panx2 (ENSMSIG00000021430) #8	Selenoo (ENSMSIG00000021500) #10	Tubgcp6 (ENSMSIG00000021518) #11	Hdac10 (ENSMSIG00000021649) #12	Mapk12 (ENSMSIG00000021754) #13	Mapk11 (ENSMSIG00000021771) #14	Plxnb2 (ENSMSIG00000021786) #15	Dennd6b (ENSMSIG00000021830) #16	Ppp6r2 (ENSMSIG00000022106) #17	Sbf1 (ENSMSIG00000022239) #18	Adm2 (ENSMSIG00000022357) #19	Miox (ENSMSIG00000022365) #20	Lmf2 (ENSMSIG00000022386) #21	Ncaph2 (ENSMSIG00000022410) #22	Sco2 (ENSMSIG00000022541) #23	Tymp (ENSMSIG00000022545) #24	Odf3b (ENSMSIG00000022554) #25	ENSMSIG00000022560 #26	Syce3 (ENSMSIG00000022563) #27	Cpt1b (ENSMSIG00000022570) #28	Chkb (ENSMSIG00000022596) #29	ENSMSIG00000022637 #30	Mapk8ip2 (ENSMSIG00000022642) #31	Arsa (ENSMSIG00000022691) #32	Shank3 (ENSMSIG00000022725) #33	Acr (ENSMSIG00000022877) #34	Rabl2 (ENSMSIG00000022891) #35	ENSMSIG00000022915	Syt10 (ENSMSIG00000022932) #36
spretus	MODERN SPECIES	6	Mov10l1 (MGP_SPRETEiJ_G0021045) #7	Panx2 (MGP_SPRETEiJ_G0021046) #8	Trabd (MGP_SPRETEiJ_G0021047) #9	MGP_SPRETEiJ_G0021048 #10	Tubgcp6 (MGP_SPRETEiJ_G0021049) #11	Hdac10 (MGP_SPRETEiJ_G0021050) #12	Mapk12 (MGP_SPRETEiJ_G0021051) #13	Mapk11 (MGP_SPRETEiJ_G0021052) #14	Plxnb2 (MGP_SPRETEiJ_G0021053) #15	Dennd6b (MGP_SPRETEiJ_G0021054) #16	Ppp6r2 (MGP_SPRETEiJ_G0021055) #17	Sbf1 (MGP_SPRETEiJ_G0021056) #18	Adm2 (MGP_SPRETEiJ_G0021057) #19	Miox (MGP_SPRETEiJ_G0021058) #20	Lmf2 (MGP_SPRETEiJ_G0021059) #21	Ncaph2 (MGP_SPRETEiJ_G0021060) #22	Sco2 (MGP_SPRETEiJ_G0021061) #23	Tymp (MGP_SPRETEiJ_G0021062) #24	Odf3b (MGP_SPRETEiJ_G0021063) #25	MGP_SPRETEiJ_G0021064 #26	Syce3 (MGP_SPRETEiJ_G0021065) #27	Cpt1b (MGP_SPRETEiJ_G0021067) #28	Chkb (MGP_SPRETEiJ_G0021066) #29	MGP_SPRETEiJ_G0021068 #30	Mapk8ip2 (MGP_SPRETEiJ_G0021069) #31	MGP_SPRETEiJ_G0021070 #32	Shank3 (MGP_SPRETEiJ_G0021071) #33	Acr (MGP_SPRETEiJ_G0021072) #34	Rabl2 (MGP_SPRETEiJ_G0021073) #35	Syt10 (MGP_SPRETEiJ_G0021074) #36	Alg10b (MGP_SPRETEiJ_G0021075) #37
Mouse	MODERN SPECIES	6	Mov10l1 (ENSMUSG00000015365) #7	Panx2 (ENSMUSG00000058441) #8	Trabd (ENSMUSG00000015363) #9	Selenoo (ENSMUSG00000035757) #10	Tubgcp6 (ENSMUSG00000051786) #11	Hdac10 (ENSMUSG00000062906) #12	Mapk12 (ENSMUSG00000022610) #13	Mapk11 (ENSMUSG00000053137) #14	Plxnb2 (ENSMUSG00000036606) #15	Dennd6b (ENSMUSG00000015377) #16	Ppp6r2 (ENSMUSG00000036561) #17	Sbf1 (ENSMUSG00000036529) #18	Adm2 (ENSMUSG00000054136) #19	Miox (ENSMUSG00000022613) #20	Lmf2 (ENSMUSG00000022614) #21	Ncaph2 (ENSMUSG00000008690) #22	Sco2 (ENSMUSG00000091780) #23	Tymp (ENSMUSG00000022615) #24	Odf3b (ENSMUSG00000047394) #25	Klhdc7b (ENSMUSG00000091680) #26	Syce3 (ENSMUSG00000078938) #27	Cpt1b (ENSMUSG00000078937) #28	Chkb (ENSMUSG00000022617) #29	Mapk8ip2 (ENSMUSG00000022619) #31	Arsa (ENSMUSG00000022620) #32	Shank3 (ENSMUSG00000022623) #33	Acr (ENSMUSG00000022622) #34	Rabl2 (ENSMUSG00000022621) #35	Syt10 (ENSMUSG00000063260) #36	Alg10b (ENSMUSG00000075470) #37	Cpne8 (ENSMUSG00000052560)
Ryukyu mouse	MODERN SPECIES	6	Mov10l1 (MGP_CAROLIEiJ_G0020148) #7	Panx2 (MGP_CAROLIEiJ_G0020149) #8	Trabd (MGP_CAROLIEiJ_G0020150) #9	MGP_CAROLIEiJ_G0020151 #10	Tubgcp6 (MGP_CAROLIEiJ_G0020152) #11	Hdac10 (MGP_CAROLIEiJ_G0020153) #12	Mapk12 (MGP_CAROLIEiJ_G0020154) #13	Mapk11 (MGP_CAROLIEiJ_G0020155) #14	Plxnb2 (MGP_CAROLIEiJ_G0020156) #15	Dennd6b (MGP_CAROLIEiJ_G0020157) #16	Ppp6r2 (MGP_CAROLIEiJ_G0020158) #17	Sbf1 (MGP_CAROLIEiJ_G0020159) #18	Adm2 (MGP_CAROLIEiJ_G0020160) #19	Miox (MGP_CAROLIEiJ_G0020161) #20	Lmf2 (MGP_CAROLIEiJ_G0020162) #21	Ncaph2 (MGP_CAROLIEiJ_G0020163) #22	Sco2 (MGP_CAROLIEiJ_G0020164) #23	Tymp (MGP_CAROLIEiJ_G0020165) #24	Odf3b (MGP_CAROLIEiJ_G0020166) #25	MGP_CAROLIEiJ_G0020167 #26	Syce3 (MGP_CAROLIEiJ_G0020168) #27	Cpt1b (MGP_CAROLIEiJ_G0020170) #28	Chkb (MGP_CAROLIEiJ_G0020169) #29	MGP_CAROLIEiJ_G0020171 #30	Mapk8ip2 (MGP_CAROLIEiJ_G0020172) #31	MGP_CAROLIEiJ_G0020173 #32	Shank3 (MGP_CAROLIEiJ_G0020174) #33	Acr (MGP_CAROLIEiJ_G0020175) #34	Rabl2 (MGP_CAROLIEiJ_G0020176) #35	Syt10 (MGP_CAROLIEiJ_G0020177) #36	Alg10b (MGP_CAROLIEiJ_G0020178) #37
Mus_A	ANCESTRAL SPECIES																	ENSGT00390000014443.l #22
Mus_B	ANCESTRAL SPECIES																	ENSGT00390000014443.l #22
Mus_C	ANCESTRAL SPECIES																	ENSGT00390000014443.l #22
Steppe mouse	MODERN SPECIES	3211						Ezr (ENSMSIG00000014644)	Sytl3 (ENSMSIG00000014687)	ENSMSIG00000014712	Tmem181a (ENSMSIG00000014774)	Tulp4 (ENSMSIG00000014861)	Gtf2h5 (ENSMSIG00000014886)	Serac1 (ENSMSIG00000014904)	Synj2 (ENSMSIG00000015028)	Snx9 (ENSMSIG00000015240)	Zdhhc14 (ENSMSIG00000015288)	ENSMSIG00000015308 #22	Tmem242 (ENSMSIG00000015329)	Arid1b (ENSMSIG00000015417)	ENSMSIG00000015661	ENSMSIG00000015702