Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000158060	ENSGT00940000162832 #7	ENSGT00510000050080 #8	ENSGT00390000000732 #9	ENSGT00940000156407 #11	ENSGT00950000182970.A.b #12	ENSGT01030000234597.a.b.b.f #13	ENSGT00410000025596.a.a #14	ENSGT00940000160694 #15	ENSGT00390000006008 #16	ENSGT00940000161518 #17	ENSGT00940000161218 #18	ENSGT00390000009113.a.a #19	ENSGT00950000183029.C #20	ENSGT00940000160093 #21	ENSGT00940000159329 #22	ENSGT00940000153769.G #23	ENSGT00890000139515 #24	ENSGT00940000157989.b #25	ENSGT00940000160406 #26	ENSGT00940000156911 #27	ENSGT00940000158186 #28	ENSGT00390000015162 #29	ENSGT00940000155532 #30	ENSGT00390000002821 #31	ENSGT00940000161930 #33	ENSGT00390000018730.A #34	ENSGT00390000007823 #35	ENSGT01100000263518.A.a.a.a #36	ENSGT01080000257410.C #37	ENSGT00940000160139
Hystricomorpha_a	ANCESTRAL SPECIES	66	ENSGT00940000158060	ENSGT00940000162832 #7	ENSGT00510000050080 #8	ENSGT00390000000732 #9	ENSGT00940000156407 #11	ENSGT00950000182970.A.b #12	ENSGT01030000234597.a.b.b.f #13	ENSGT00410000025596.a.a #14	ENSGT00940000160694 #15	ENSGT00390000006008 #16	ENSGT00940000161518 #17	ENSGT00940000161218 #18	ENSGT00390000009113.a.a #19	ENSGT00950000183029.C #20	ENSGT00940000160093 #21	ENSGT00940000159329 #22	ENSGT00940000153769.G #23	ENSGT00890000139515 #24	ENSGT00940000157989.b #25	ENSGT00940000160406 #26	ENSGT00940000156911 #27	ENSGT00940000158186 #28	ENSGT00390000015162 #29	ENSGT00940000155532 #30	ENSGT00390000002821 #31	ENSGT00940000161930 #33	ENSGT00390000018730.A #34	ENSGT00390000007823 #35	ENSGT01100000263518.A.a.a.a #36	ENSGT01080000257410.C #37	ENSGT00940000160139
Hystricomorpha_b	ANCESTRAL SPECIES	83	ENSGT00940000158060	ENSGT00940000162832 #7	ENSGT00510000050080 #8	ENSGT00390000000732 #9	ENSGT00940000156407 #11	ENSGT00950000182970.A.b #12	ENSGT01030000234597.a.b.b.f #13	ENSGT00410000025596.a.a #14	ENSGT00940000160694 #15	ENSGT00390000006008 #16	ENSGT00940000161518 #17	ENSGT00940000161218 #18	ENSGT00390000009113.a.a #19	ENSGT00950000183029.C #20	ENSGT00940000160093 #21	ENSGT00940000159329 #22	ENSGT00940000153769.G #23	ENSGT00890000139515 #24	ENSGT00940000157989.b #25	ENSGT00940000160406 #26	ENSGT00940000156911 #27	ENSGT00940000158186 #28	ENSGT00390000015162 #29	ENSGT00940000155532 #30	ENSGT00390000002821 #31	ENSGT00940000161930 #33	ENSGT00390000018730.A #34	ENSGT00390000007823 #35	ENSGT01100000263518.A.a.a.a #36	ENSGT01080000257410.C #37	ENSGT00940000160139
Degu	MODERN SPECIES	235	SLC2A4RG (ENSODEG00000006508) #7	LIME1 (ENSODEG00000006535) #8	ZGPAT (ENSODEG00000006562) #9	ENSODEG00000006608 #10	ARFRP1 (ENSODEG00000006629) #11	RTEL1 (ENSODEG00000006769) #12	STMN3 (ENSODEG00000007140) #13	ENSODEG00000007154 #14	HELZ2 (ENSODEG00000007200) #15	ENSODEG00000007298 #16	SRMS (ENSODEG00000007310) #17	PTK6 (ENSODEG00000007334) #18	PPDPF (ENSODEG00000003923) #19	EEF1A2 (ENSODEG00000003948) #20	KCNQ2 (ENSODEG00000004014) #21	CHRNA4 (ENSODEG00000004088) #22	ENSODEG00000004143 #23	ARFGAP1 (ENSODEG00000004250) #24	NKAIN4 (ENSODEG00000004313) #25	BIRC7 (ENSODEG00000004350) #26	ENSODEG00000004380 #27	SLC17A9 (ENSODEG00000004413) #28	ENSODEG00000004429 #29	DIDO1 (ENSODEG00000004463) #30	TCFL5 (ENSODEG00000004537) #31	ENSODEG00000004560 #32	ENSODEG00000004588 #33	OGFR (ENSODEG00000004656) #34	MRGBP (ENSODEG00000004674) #35	NTSR1 (ENSODEG00000004689) #36	SLCO4A1 (ENSODEG00000004720) #37
Long-tailed chinchilla	MODERN SPECIES	235	ZBTB46 (ENSCLAG00000009288)	SLC2A4RG (ENSCLAG00000009004) #7	LIME1 (ENSCLAG00000003864) #8	ZGPAT (ENSCLAG00000004087) #9	ARFRP1 (ENSCLAG00000004200) #11	RTEL1 (ENSCLAG00000005519) #12	STMN3 (ENSCLAG00000004737) #13	GMEB2 (ENSCLAG00000005998) #14	HELZ2 (ENSCLAG00000006292) #15	FNDC11 (ENSCLAG00000005206) #16	SRMS (ENSCLAG00000005546) #17	PTK6 (ENSCLAG00000005884) #18	PPDPF (ENSCLAG00000005999) #19	EEF1A2 (ENSCLAG00000006710) #20	KCNQ2 (ENSCLAG00000004205) #21	CHRNA4 (ENSCLAG00000002115) #22	ENSCLAG00000002569 #23	ARFGAP1 (ENSCLAG00000003171) #24	NKAIN4 (ENSCLAG00000003530) #25	BIRC7 (ENSCLAG00000003588) #26	YTHDF1 (ENSCLAG00000005989) #27	SLC17A9 (ENSCLAG00000006378) #28	GID8 (ENSCLAG00000006562) #29	DIDO1 (ENSCLAG00000006615) #30	ENSCLAG00000007594 #31	ENSCLAG00000007710 #33	OGFR (ENSCLAG00000008130) #34	ENSCLAG00000002627 #35	NTSR1 (ENSCLAG00000002645) #36	SLCO4A1 (ENSCLAG00000007190) #37	CABLES2 (ENSCLAG00000007291)
Guinea pig	MODERN SPECIES	119	ABHD16B (ENSCPOG00000014395)	ZBTB46 (ENSCPOG00000002803)	SLC2A4RG (ENSCPOG00000035815) #7	ENSCPOG00000019294 #8	ZGPAT (ENSCPOG00000014427) #9	ARFRP1 (ENSCPOG00000038193) #11	RTEL1 (ENSCPOG00000014414) #12	STMN3 (ENSCPOG00000023626) #13	GMEB2 (ENSCPOG00000025567) #14	HELZ2 (ENSCPOG00000006905) #15	FNDC11 (ENSCPOG00000010652) #16	SRMS (ENSCPOG00000006895) #17	PTK6 (ENSCPOG00000006885) #18	EEF1A2 (ENSCPOG00000022072) #20	KCNQ2 (ENSCPOG00000006949) #21	CHRNA4 (ENSCPOG00000010559) #22	ENSCPOG00000021624	ARFGAP1 (ENSCPOG00000025055) #24	NKAIN4 (ENSCPOG00000005586) #25	BIRC7 (ENSCPOG00000020366) #26	YTHDF1 (ENSCPOG00000010202) #27	SLC17A9 (ENSCPOG00000001082) #28	GID8 (ENSCPOG00000007888) #29	DIDO1 (ENSCPOG00000004884) #30	TCFL5 (ENSCPOG00000020307) #31	ENSCPOG00000002720 #33	OGFR (ENSCPOG00000003143) #34	MRGBP (ENSCPOG00000020272) #35	NTSR1 (ENSCPOG00000033878) #36	SLCO4A1 (ENSCPOG00000015749) #37	GATA5 (ENSCPOG00000030979)