Hystricomorpha_a	ANCESTRAL SPECIES	12	ENSGT00390000006218 #7	ENSGT00940000160574 #8	ENSGT00440000034605 #9	ENSGT00390000016768 #10	ENSGT00940000154234.a #11	ENSGT00940000155379 #12	ENSGT00530000063822.a.a #13	ENSGT00940000156046 #14	ENSGT00390000001680 #15	ENSGT00940000159310 #16	ENSGT00940000160980 #17	ENSGT00390000018100 #18	ENSGT00940000157661 #19	ENSGT00390000009140 #20	ENSGT00940000153438.a.b #21	ENSGT00940000160199 #22	ENSGT00940000153571.b #23	ENSGT00390000016309 #24	ENSGT00390000002169 #25	ENSGT00530000063472.b.b.a.b #26	ENSGT00940000155960.b #27	ENSGT00390000006758.b #28	ENSGT00940000157402 #29	ENSGT00950000182976.a.b #30	ENSGT00440000037417.A #31	ENSGT00940000158268.a #32	ENSGT00940000164776 #33	ENSGT00950000182857.a.a.a	ENSGT00940000155733.a.a	ENSGT00940000160892	ENSGT01030000234588.b.b.b.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	10	ENSGT00390000006218 #7	ENSGT00940000160574 #8	ENSGT00440000034605 #9	ENSGT00390000016768 #10	ENSGT00940000154234.a #11	ENSGT00940000155379 #12	ENSGT00530000063822.a.a #13	ENSGT00940000156046 #14	ENSGT00390000001680 #15	ENSGT00940000159310 #16	ENSGT00940000160980 #17	ENSGT00390000018100 #18	ENSGT00940000157661 #19	ENSGT00390000009140 #20	ENSGT00940000153438.a.b #21	ENSGT00940000160199 #22	ENSGT00940000153571.b #23	ENSGT00390000016309 #24	ENSGT00390000002169 #25	ENSGT00530000063472.b.b.a.b #26	ENSGT00940000155960.b #27	ENSGT00390000006758.b #28	ENSGT00940000157402 #29	ENSGT00950000182976.a.b #30	ENSGT00440000037417.A #31	ENSGT00940000158268.a #32	ENSGT00940000164776 #33	ENSGT00940000164129.b.b ##37	ENSGT00950000182857.a.a.a	ENSGT00940000155733.a.a	ENSGT00940000160892
Long-tailed chinchilla	MODERN SPECIES	129	COMMD9 (ENSCLAG00000014761) #7	LDLRAD3 (ENSCLAG00000013692) #8	TRIM44 (ENSCLAG00000014212) #9	FJX1 (ENSCLAG00000014978) #10	PAMR1 (ENSCLAG00000014744) #11	SLC1A2 (ENSCLAG00000014237) #12	ENSCLAG00000015376 #13	PDHX (ENSCLAG00000014466) #14	APIP (ENSCLAG00000014703) #15	EHF (ENSCLAG00000017235) #16	ELF5 (ENSCLAG00000013934) #17	CAT (ENSCLAG00000013690) #18	ABTB2 (ENSCLAG00000014834) #19	NAT10 (ENSCLAG00000016692) #20	ENSCLAG00000015468 #21	LMO2 (ENSCLAG00000015594) #22	FBXO3 (ENSCLAG00000015193) #23	ENSCLAG00000014692 #24	C11orf91 (ENSCLAG00000015126) #25	KIAA1549L (ENSCLAG00000014544) #26	HIPK3 (ENSCLAG00000015597) #27	CSTF3 (ENSCLAG00000016179) #28	TCP11L1 (ENSCLAG00000014173) #29	DEPDC7 (ENSCLAG00000014529) #30	QSER1 (ENSCLAG00000015487) #31	PRRG4 (ENSCLAG00000015908) #32	ENSCLAG00000014901 #33	ENSCLAG00000015090 #34	ENSCLAG00000015802 #35	ENSCLAG00000014871 #36	ENSCLAG00000016589 #37
Degu	MODERN SPECIES	59	ENSODEG00000016254	PAMR1 (ENSODEG00000016795) #11	SLC1A2 (ENSODEG00000016926) #12	ENSODEG00000016446 #13	PDHX (ENSODEG00000016591) #14	ENSODEG00000016598	ENSODEG00000016570 #15	EHF (ENSODEG00000017375) #16	ELF5 (ENSODEG00000016572) #17	CAT (ENSODEG00000016770) #18	ENSODEG00000016618	ABTB2 (ENSODEG00000016924) #19	NAT10 (ENSODEG00000017069) #20	CAPRIN1 (ENSODEG00000016723) #21	ENSODEG00000020372	LMO2 (ENSODEG00000016866) #22	FBXO3 (ENSODEG00000016802) #23	ENSODEG00000016777	C11orf91 (ENSODEG00000016808) #25	KIAA1549L (ENSODEG00000017186) #26	ENSODEG00000017088	HIPK3 (ENSODEG00000017164) #27	ENSODEG00000016631	ENSODEG00000016737 #28	TCP11L1 (ENSODEG00000017087) #29	DEPDC7 (ENSODEG00000016692) #30	QSER1 (ENSODEG00000016682) #31	ENSODEG00000020396	PRRG4 (ENSODEG00000016931) #32	ENSODEG00000016794	ENSODEG00000017179
Guinea pig	MODERN SPECIES	92	COMMD9 (ENSCPOG00000010648) #7	LDLRAD3 (ENSCPOG00000035009) #8	TRIM44 (ENSCPOG00000011263) #9	FJX1 (ENSCPOG00000022249) #10	PAMR1 (ENSCPOG00000007812) #11	SLC1A2 (ENSCPOG00000007801) #12	CD44 (ENSCPOG00000007792) #13	PDHX (ENSCPOG00000003099) #14	APIP (ENSCPOG00000003097) #15	EHF (ENSCPOG00000012596) #16	ELF5 (ENSCPOG00000012593) #17	CAT (ENSCPOG00000012582) #18	ABTB2 (ENSCPOG00000020779) #19	NAT10 (ENSCPOG00000015736) #20	CAPRIN1 (ENSCPOG00000015734) #21	LMO2 (ENSCPOG00000026645) #22	FBXO3 (ENSCPOG00000013568) #23	C11orf91 (ENSCPOG00000023939) #25	KIAA1549L (ENSCPOG00000005350) #26	HIPK3 (ENSCPOG00000002078) #27	CSTF3 (ENSCPOG00000005545) #28	TCP11L1 (ENSCPOG00000019920) #29	DEPDC7 (ENSCPOG00000014540) #30	QSER1 (ENSCPOG00000012681) #31	PRRG4 (ENSCPOG00000036780) #32	ENSCPOG00000002237 #34	ENSCPOG00000039157 #35	ENSCPOG00000033210 ##37	ENSCPOG00000037447 #33	ENSCPOG00000031373 ##34	ENSCPOG00000033019 ##34