Bovidae ANCESTRAL SPECIES 9 ENSGT00390000017390 #9 ENSGT00530000063970.d #10 ENSGT00940000162055 #11 ENSGT00940000158134.B #12 ENSGT00390000014574 #13 ENSGT00940000160085 #14 ENSGT00940000159385 #15 ENSGT00390000017765 #16 ENSGT00940000156371 #17 ENSGT00940000162182 ENSGT00940000163343 #18 ENSGT00390000003446 #19 ENSGT00940000156028 #20 ENSGT00410000029325 ENSGT00390000004871.a ##22 ENSGT00390000004871.b #22 ENSGT00950000183224 #23 ENSGT00940000153998.a #24 ENSGT00390000004910 #25 ENSGT00960000187533 #26 ENSGT00940000161692 #27 ENSGT00940000153251.a #28 ENSGT00940000160318 #29 ENSGT00940000162944 #30 ENSGT00390000006307 #31 ENSGT00390000007697 #33 ENSGT00940000158592 #36 ENSGT00390000008948 #37 ENSGT00940000156631.B ENSGT00940000156881 ENSGT00940000156527 Bovinae DUPLICATION Bovinae DUPLICATION Bovinae ANCESTRAL SPECIES 6 ENSGT00390000010308 #8 ENSGT00390000017390 #9 ENSGT00530000063970.d #10 ENSGT00940000162055 #11 ENSGT00940000158134.B #12 ENSGT00390000014574 #13 ENSGT00940000160085 #14 ENSGT00940000159385 #15 ENSGT00390000017765 #16 ENSGT00940000156371 #17 ENSGT00940000162182 ENSGT00940000163343 #18 ENSGT00390000003446 #19 ENSGT00940000156028 #20 ENSGT00390000004871.a ##22 ENSGT00390000004871.b.e.a #22 ENSGT00950000183224 #23 ENSGT00940000153998.a #24 ENSGT00390000004910 #25 ENSGT00960000187533 #26 ENSGT00940000161692 #27 ENSGT00940000153251.a #28 ENSGT00940000160318 #29 ENSGT00940000162944 #30 ENSGT00390000006307 #31 ENSGT00390000007697 #33 ENSGT00940000158592 #36 ENSGT00390000008948 #37 ENSGT00940000156631.B ENSGT00940000156881 ENSGT00940000156527 Bos ANCESTRAL SPECIES 7 ENSGT00390000010308 #8 ENSGT00390000017390 #9 ENSGT00530000063970.d.c #10 ENSGT00940000162055 #11 ENSGT00940000158134.B #12 ENSGT00390000014574 #13 ENSGT00940000160085 #14 ENSGT00940000159385 #15 ENSGT00390000017765 #16 ENSGT00940000156371 #17 ENSGT00940000162182 ENSGT00940000163343 #18 ENSGT00390000003446 #19 ENSGT00940000156028 #20 ENSGT00390000004871.a ##22 ENSGT00390000004871.b.e.a #22 ENSGT00950000183224 #23 ENSGT00940000153998.a #24 ENSGT00390000004910 #25 ENSGT00960000187533 #26 ENSGT00940000161692 #27 ENSGT00940000153251.a #28 ENSGT00940000160318 #29 ENSGT00940000162944 #30 ENSGT00390000006307 #31 ENSGT00940000162286.a.a.e.b.b.b.b.a.a.a.a.b.b #32 ENSGT00390000007697 #33 ENSGT00940000158592 #36 ENSGT00390000008948 #37 ENSGT00940000156631.B ENSGT00940000156881 Bos_b ANCESTRAL SPECIES 5 ENSGT00390000010308 #8 ENSGT00390000017390 #9 ENSGT00530000063970.d.c #10 ENSGT00940000162055 #11 ENSGT00940000158134.B #12 ENSGT00390000014574 #13 ENSGT00940000160085 #14 ENSGT00940000159385 #15 ENSGT00390000017765 #16 ENSGT00940000156371 #17 ENSGT00940000162182 ENSGT00940000163343 #18 ENSGT00390000003446 #19 ENSGT00940000156028 #20 ENSGT00390000004871.a ##22 ENSGT00390000004871.b.e.a #22 ENSGT00950000183224 #23 ENSGT00940000153998.a #24 ENSGT00390000004910 #25 ENSGT00960000187533 #26 ENSGT00940000161692 #27 ENSGT00940000153251.a #28 ENSGT00940000160318 #29 ENSGT00940000162944 #30 ENSGT00390000006307 #31 ENSGT00940000162286.a.a.e.b.b.b.b.a.a.a.a.b.b #32 ENSGT00390000007697 #33 ENSGT00940000158592 #36 ENSGT00390000008948 #37 ENSGT00940000156631.B ENSGT00940000156881 Hybrid Bos Indicus MODERN SPECIES SLC35A5 (ENSBIXG00005014922) #7 ATG3 (ENSBIXG00005014958) #8 BTLA (ENSBIXG00005014991) #9 CD200 (ENSBIXG00005015027) #10 SLC9C1 (ENSBIXG00005002228) #11 GCSAM (ENSBIXG00005007129) #12 C3orf52 (ENSBIXG00005002234) #13 TMPRSS7 (ENSBIXG00005015268) #14 TAGLN3 (ENSBIXG00005015337) #15 ABHD10 (ENSBIXG00005015384) #16 PHLDB2 (ENSBIXG00005015664) #17 ZBED2 (ENSBIXG00005015745) #18 CD96 (ENSBIXG00005006238) #19 NECTIN3 (ENSBIXG00005015840) #20 ENSBIXG00005015914 #21 DPPA2 (ENSBIXG00005000111) #22 C3orf85 (ENSBIXG00005002537) #23 MORC1 (ENSBIXG00005016050) #24 ENSBIXG00005016091 #25 ENSBIXG00005016106 #26 DZIP3 (ENSBIXG00005016143) #27 CIP2A (ENSBIXG00005006386) #28 MYH15 (ENSBIXG00005016532) #29 HHLA2 (ENSBIXG00005016590) #30 IFT57 (ENSBIXG00005016629) #31 ENSBIXG00005016655 #32 CD47 (ENSBIXG00005016762) #33 ENSBIXG00005016825 #34 ENSBIXG00005002719 #35 BBX (ENSBIXG00005016980) #36 CCDC54 (ENSBIXG00005017049) #37 Cow MODERN SPECIES SLC9C1 (ENSBTAG00000019332) #11 GCSAM (ENSBTAG00000048550) #12 C1H3orf52 (ENSBTAG00000016554) #13 TMPRSS7 (ENSBTAG00000015065) #14 TAGLN3 (ENSBTAG00000004599) #15 ABHD10 (ENSBTAG00000004601) #16 PHLDB2 (ENSBTAG00000001209) #17 PLCXD2 (ENSBTAG00000012646) ZBED2 (ENSBTAG00000046637) #18 CD96 (ENSBTAG00000014441) #19 NECTIN3 (ENSBTAG00000013769) #20 ENSBTAG00000033360 ENSBTAG00000051495 ENSBTAG00000022275 #21 DPPA4 (ENSBTAG00000038103) ##22 DPPA2 (ENSBTAG00000020460) #22 TRAT1 (ENSBTAG00000049108) #25 ENSBTAG00000054027 #26 DZIP3 (ENSBTAG00000006158) #27 CIP2A (ENSBTAG00000017140) #28 MYH15 (ENSBTAG00000018399) #29 HHLA2 (ENSBTAG00000018397) #30 IFT57 (ENSBTAG00000005787) #31 ENSBTAG00000049729 #32 CD47 (ENSBTAG00000003585) #33 BBX (ENSBTAG00000006893) #36 CCDC54 (ENSBTAG00000046313) #37 CBLB (ENSBTAG00000013057) ALCAM (ENSBTAG00000000088) ZPLD1 (ENSBTAG00000003666) NFKBIZ (ENSBTAG00000010987) American bison MODERN SPECIES 3026 ENSBBBG00000011825 ENSBBBG00000002203 #22 C3orf85 (ENSBBBG00000011854) #23 MORC1 (ENSBBBG00000011907) #24 TRAT1 (ENSBBBG00000011919) #25 ENSBBBG00000011926 ENSBBBG00000001965 ENSBBBG00000011931 #26 ENSBBBG00000002227 DZIP3 (ENSBBBG00000011967) #27 CIP2A (ENSBBBG00000011987) #28 MYH15 (ENSBBBG00000002267) #29 IFT57 (ENSBBBG00000012091) #31 CD47 (ENSBBBG00000012123) #33 BBX (ENSBBBG00000012220) #36 CCDC54 (ENSBBBG00000012229) #37 CBLB (ENSBBBG00000007355) Bovinae ANCESTRAL SPECIES ENSGT00390000004871.b.e.b ##22 Bos ANCESTRAL SPECIES ENSGT00390000004871.b.e.b ##22 Bos_a ANCESTRAL SPECIES ENSGT00390000004871.b.e.b ##22 Domestic yak MODERN SPECIES BTLA (ENSBGRG00000000651) #9 ENSBGRG00000000619 #10 SLC9C1 (ENSBGRG00000000555) #11 GCSAM (ENSBGRG00000000533) #12 C3orf52 (ENSBGRG00000000506) #13 TMPRSS7 (ENSBGRG00000000450) #14 TAGLN3 (ENSBGRG00000000410) #15 ABHD10 (ENSBGRG00000000391) #16 PHLDB2 (ENSBGRG00000000255) #17 ENSBGRG00000000214 ##34 ZBED2 (ENSBGRG00000000207) #18 CD96 (ENSBGRG00000000198) #19 NECTIN3 (ENSBGRG00000000168) #20 ENSBGRG00000000156 ENSBGRG00000006977 DPPA2 (ENSBGRG00000006867) ##22 ENSBGRG00000006859 C3orf85 (ENSBGRG00000006827) #23 ENSBGRG00000006811 MORC1 (ENSBGRG00000006492) #24 ENSBGRG00000006452 ENSBGRG00000006345 #25 ENSBGRG00000006301 #26 DZIP3 (ENSBGRG00000006159) #27 CIP2A (ENSBGRG00000005873) #28 ENSBGRG00000005778 #29 HHLA2 (ENSBGRG00000005737) #30 IFT57 (ENSBGRG00000005675) #31 ENSBGRG00000005662 #32 CD47 (ENSBGRG00000005454) #33 ENSBGRG00000005428 Bos_b ANCESTRAL SPECIES ENSGT00390000004871.b.e.b ##22 Cow MODERN SPECIES 19 SORBS2 (ENSBTAG00000016486) TLR3 (ENSBTAG00000008682) FAM149A (ENSBTAG00000034393) CYP4V2 (ENSBTAG00000021263) KLKB1 (ENSBTAG00000009501) F11 (ENSBTAG00000003572) MTNR1A (ENSBTAG00000046938) FAT1 (ENSBTAG00000020657) ENSBTAG00000050498 ENSBTAG00000050692 ENSBTAG00000050561 ZFP42 (ENSBTAG00000044139) TRIML2 (ENSBTAG00000008637) TRIML1 (ENSBTAG00000008639) ENSBTAG00000045531 ENSBTAG00000047159 ##22 ENSBTAG00000005559 FRG1 (ENSBTAG00000007089) ASAH1 (ENSBTAG00000011257) PCM1 (ENSBTAG00000007236) FGL1 (ENSBTAG00000016177) ENSBTAG00000055214 MTUS1 (ENSBTAG00000039682) PDGFRL (ENSBTAG00000001966) SLC7A2 (ENSBTAG00000010085) MTMR7 (ENSBTAG00000010372) VPS37A (ENSBTAG00000010355) CNOT7 (ENSBTAG00000018036) ZDHHC2 (ENSBTAG00000044194) MICU3 (ENSBTAG00000020468) FGF20 (ENSBTAG00000044043) American bison MODERN SPECIES 2986 C4orf47 (ENSBBBG00000014420) ENSBBBG00000014415 PDLIM3 (ENSBBBG00000001406) SORBS2 (ENSBBBG00000003262) TLR3 (ENSBBBG00000001476) ENSBBBG00000003131 CYP4V2 (ENSBBBG00000013998) KLKB1 (ENSBBBG00000013988) F11 (ENSBBBG00000003065) MTNR1A (ENSBBBG00000003051) FAT1 (ENSBBBG00000013946) ENSBBBG00000013907 ZFP42 (ENSBBBG00000013901) TRIML2 (ENSBBBG00000007358) TRIML1 (ENSBBBG00000003005) ENSBBBG00000003000 ##22 Bovinae DUPLICATION Bovinae ANCESTRAL SPECIES ENSGT00390000004871.b.f.a ##22 Bos ANCESTRAL SPECIES ENSGT00390000004871.b.f.a ##22 Bos_a ANCESTRAL SPECIES ENSGT00390000004871.b.f.a ##22 Wild yak MODERN SPECIES 197 SEPTIN10 (ENSBMUG00000004797) EVA1A (ENSBMUG00000004741) ENSBMUG00000004697 ##22 MRPL19 (ENSBMUG00000004686) GCFC2 (ENSBMUG00000004657) SANBR (ENSBMUG00000004535) PEX13 (ENSBMUG00000004496) PUS10 (ENSBMUG00000004482) REL (ENSBMUG00000004455) PAPOLG (ENSBMUG00000004430) American bison MODERN SPECIES 3344 ENSBBBG00000020588 SLC5A7 (ENSBBBG00000020621) SULT1C3 (ENSBBBG00000020639) SULT1C2 (ENSBBBG00000000502) SULT1C4 (ENSBBBG00000020676) GCC2 (ENSBBBG00000020700) ENSBBBG00000020809 ENSBBBG00000020842 RANBP2 (ENSBBBG00000005701) CCDC138 (ENSBBBG00000021433) EDAR (ENSBBBG00000021445) SH3RF3 (ENSBBBG00000021463) SEPTIN10 (ENSBBBG00000021522) EVA1A (ENSBBBG00000021541) ENSBBBG00000021556 ENSBBBG00000021566 ##22 MRPL19 (ENSBBBG00000005745) GCFC2 (ENSBBBG00000005750) SANBR (ENSBBBG00000021794) PEX13 (ENSBBBG00000021817) PUS10 (ENSBBBG00000007680) REL (ENSBBBG00000005796) PAPOLG (ENSBBBG00000021917) ENSBBBG00000021975 ENSBBBG00000005813 ENSBBBG00000021993 ENSBBBG00000005815 FANCL (ENSBBBG00000022110) VRK2 (ENSBBBG00000022177) ENSBBBG00000022184 Bovinae ANCESTRAL SPECIES ENSGT00390000004871.b.f.b ##22 Bos ANCESTRAL SPECIES ENSGT00390000004871.b.f.b ##22 Bos_a ANCESTRAL SPECIES 5 ENSGT00940000161699 ENSGT00950000182827.A #7 ENSGT00390000010308 #8 ENSGT00390000017390 #9 ENSGT00530000063970.d.c #10 ENSGT00940000162055 #11 ENSGT00940000158134.B #12 ENSGT00390000014574 #13 ENSGT00940000160085 #14 ENSGT00940000159385 #15 ENSGT00390000017765 #16 ENSGT00940000156371 #17 ENSGT00940000163343 #18 ENSGT00390000003446 #19 ENSGT00940000156028 #20 ENSGT00390000004871.b.f.b ##22 ENSGT00950000183224 #23 ENSGT00940000153998.a #24 ENSGT00390000004910 #25 ENSGT00960000187533 #26 ENSGT00940000161692 #27 ENSGT00940000153251.a #28 ENSGT00940000160318 #29 ENSGT00940000162944 #30 ENSGT00390000006307 #31 ENSGT00940000162286.a.a.e.b.b.b.b.a.a.a.a.b.b #32 ENSGT00390000007697 #33 ENSGT00940000158592 #36 ENSGT00390000008948 #37 ENSGT00940000156631.B ENSGT00940000156881 Wild yak MODERN SPECIES 1849 ENSBMUG00000020170 ##22 C3orf85 (ENSBMUG00000020182) #23 MORC1 (ENSBMUG00000020245) #24 TRAT1 (ENSBMUG00000020282) #25 ENSBMUG00000020286 ENSBMUG00000020301 DZIP3 (ENSBMUG00000020383) #27 CIP2A (ENSBMUG00000020423) #28 MYH15 (ENSBMUG00000020500) #29 HHLA2 (ENSBMUG00000020543) #30 Caprinae ANCESTRAL SPECIES 8 ENSGT00950000182827.A #7 ENSGT00390000010308 #8 ENSGT00390000017390 #9 ENSGT00530000063970.d #10 ENSGT00940000162055 #11 ENSGT00940000158134.B #12 ENSGT00390000014574 #13 ENSGT00940000160085 #14 ENSGT00940000159385 #15 ENSGT00390000017765 #16 ENSGT00940000156371 #17 ENSGT00940000163343 #18 ENSGT00390000003446 #19 ENSGT00940000156028 #20 ENSGT00410000029325 ENSGT00390000004871.b #22 ENSGT00950000183224 #23 ENSGT00940000153998.a #24 ENSGT00390000004910 #25 ENSGT00960000187533 #26 ENSGT00940000161692 #27 ENSGT00940000153251.a #28 ENSGT00940000160318 #29 ENSGT00940000162944 #30 ENSGT00390000006307 #31 ENSGT00390000007697 #33 ENSGT00940000158592 #36 ENSGT00390000008948 #37 ENSGT00940000154451.l.b.b.b ENSGT00950000182841.b.a.a.b.a.a.a.b.o ENSGT00940000156631.B Rambouillet Sheep MODERN SPECIES BTLA (ENSOARG00020000440) #9 CD200 (ENSOARG00020000423) #10 SLC9C1 (ENSOARG00020000247) #11 GCSAM (ENSOARG00020000173) #12 ENSOARG00020006308 #13 TMPRSS7 (ENSOARG00020006147) #14 TAGLN3 (ENSOARG00020006108) #15 ABHD10 (ENSOARG00020006068) #16 ENSOARG00020006053 PLCXD2 (ENSOARG00020005631) #17 ZBED2 (ENSOARG00020005567) #18 CD96 (ENSOARG00020005504) #19 NECTIN3 (ENSOARG00020005424) #20 ENSOARG00020005383 ENSOARG00020005337 DPPA2 (ENSOARG00020005247) #22 C3orf85 (ENSOARG00020005209) #23 ENSOARG00020005186 TRAT1 (ENSOARG00020005093) #25 ENSOARG00020005055 #26 DZIP3 (ENSOARG00020004311) #27 CIP2A (ENSOARG00020004181) #28 MYH15 (ENSOARG00020003152) #29 HHLA2 (ENSOARG00020002934) #30 ENSOARG00020002914 IFT57 (ENSOARG00020002900) #31 CD47 (ENSOARG00020002866) #33 BBX (ENSOARG00020002768) #36 CCDC54 (ENSOARG00020002739) #37 ENSOARG00020002736 ENSOARG00020002728