Vertebrata	ANCESTRAL SPECIES																	ENSGT00940000158009 #22
Gnathostomata	ANCESTRAL SPECIES	273											ENSGT00940000170624	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT01100000266363
Euteleostomi	ANCESTRAL SPECIES	149	ENSGT00390000017600	ENSGT00730000111317	ENSGT00940000158167	ENSGT00940000164469	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00390000001801	ENSGT00730000111052	ENSGT00730000111450 #27	ENSGT00940000155469 #26	ENSGT00940000160746 #25	ENSGT00390000018047 #24	ENSGT00940000160025 #23	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22
Sarcopterygii	ANCESTRAL SPECIES	167													ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317	ENSGT00390000017600
Tetrapoda	ANCESTRAL SPECIES	1													ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Amniota	ANCESTRAL SPECIES	3	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Mammalia	ANCESTRAL SPECIES	65	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Theria	ANCESTRAL SPECIES	11	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Eutheria	ANCESTRAL SPECIES	6	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Boreoeutheria	ANCESTRAL SPECIES	9	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Euarchontoglires	ANCESTRAL SPECIES	8	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Primates	ANCESTRAL SPECIES	8	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Haplorrhini	ANCESTRAL SPECIES	4	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749
Simiiformes	ANCESTRAL SPECIES	6	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00910000147292	ENSGT00390000001801	ENSGT00910000144505
Catarrhini	ANCESTRAL SPECIES	7	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000012138.a.a.j.b	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT01100000263504.b	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000158211.u.a	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00910000147292
Cercopithecidae	ANCESTRAL SPECIES	5	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000012138.a.a.j.b	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00940000154631.mb #17	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT01100000263504.b	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000167895	ENSGT00940000153876.B.j.a.b.b	ENSGT00940000158211.u.a	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a
Cercopithecinae	ANCESTRAL SPECIES	9	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00940000154631.mb #17	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT01100000263504.b.r.a	ENSGT01100000263504.b.r.b	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000167895	ENSGT00940000153876.B.j.a.b.b	ENSGT00940000158211.u.a	ENSGT00940000154187.a.a	ENSGT00940000160496.b
Cercopithecinae_a	ANCESTRAL SPECIES	9	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00940000154631.mb #17	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00910000147515	ENSGT01100000263504.b.r.b	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000167895	ENSGT00940000153876.B.j.a.b.b	ENSGT00940000158211.u.a	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a
Cercopithecinae_b	ANCESTRAL SPECIES	4	ENSGT00390000014771.a	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00940000154631.mb #17	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000167895	ENSGT00940000153876.B.j.a.b.b	ENSGT00940000158211.u.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052
Cercopithecinae_d	ANCESTRAL SPECIES	117	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00940000154631.mb #17	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000166073 #21	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28
Sooty mangabey	MODERN SPECIES	651	CCT5 (ENSCATG00000030742) #7	CMBL (ENSCATG00000033887) #8	MARCHF6 (ENSCATG00000013412) #9	ROPN1L (ENSCATG00000020298) #10	ANKRD33B (ENSCATG00000039092) #11	ENSCATG00000012211 #12	CTNND2 (ENSCATG00000032880) #13	DNAH5 (ENSCATG00000036141) #14	TRIO (ENSCATG00000041897) #15	OTULINL (ENSCATG00000010694) #16	ENSCATG00000038885 #17	OTULIN (ENSCATG00000036861) #18	ENSCATG00000039416 #19	ANKH (ENSCATG00000037767) #20	ENSCATG00000040500 #21	FBXL7 (ENSCATG00000044863) #22	MARCHF11 (ENSCATG00000040604) #23	ZNF622 (ENSCATG00000031254) #24	RETREG1 (ENSCATG00000009952) #25	MYO10 (ENSCATG00000017095) #26	BASP1 (ENSCATG00000017063) #27	LINC02218 (ENSCATG00000032022) #28
Drill	MODERN SPECIES	1129									DNAH5 (ENSMLEG00000028943) #14	TRIO (ENSMLEG00000040461) #15	OTULINL (ENSMLEG00000028772) #16	OTULIN (ENSMLEG00000030194) #18	ENSMLEG00000035542 #19	ANKH (ENSMLEG00000038701) #20	ENSMLEG00000043587 #21	FBXL7 (ENSMLEG00000036522) #22
Olive baboon	MODERN SPECIES	15	MARCHF6 (ENSPANG00000001813) #9	ROPN1L (ENSPANG00000008958) #10	ANKRD33B (ENSPANG00000021670) #11	ENSPANG00000009356 #12	ENSPANG00000042254	CTNND2 (ENSPANG00000023864) #13	ENSPANG00000019790	ENSPANG00000007304	ENSPANG00000040641	DNAH5 (ENSPANG00000044963) #14	ENSPANG00000047693	TRIO (ENSPANG00000016240) #15	OTULINL (ENSPANG00000014910) #16	OTULIN (ENSPANG00000016505) #18	ANKH (ENSPANG00000014384) #20	FBXL7 (ENSPANG00000012119) #22	ENSPANG00000046248	MARCHF11 (ENSPANG00000017253) #23	ENSPANG00000046759	ZNF622 (ENSPANG00000009355) #24	RETREG1 (ENSPANG00000019521) #25	MYO10 (ENSPANG00000002428) #26	ENSPANG00000039610	ENSPANG00000039022	ENSPANG00000032323	ENSPANG00000044439	ENSPANG00000041697	BASP1 (ENSPANG00000050916) #27	ENSPANG00000050716	LINC02218 (ENSPANG00000007263) #28	ENSPANG00000041896
Macaca	ANCESTRAL SPECIES	7	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00940000154631.mb #17	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00390000000950.c.a	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00910000147515	ENSGT00390000013228.e.b #28	ENSGT01100000263504.b.r.b	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000167895	ENSGT00940000153876.B.j.a.b.b	ENSGT00940000158211.u.a	ENSGT00940000154187.a.a	ENSGT00940000160496.b
Macaca_a	ANCESTRAL SPECIES	8	ENSGT00390000014771.a	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT01080000257579.b.a.a	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT01090000260213.a.a.a.a.a.a	ENSGT00730000111450 #27	ENSGT00390000013228.e.b.g.a.b.a #28	ENSGT00390000013228.e.b.h #28	ENSGT01100000263504.b.r.a	ENSGT00390000013228.e.b.g.a.a #28	ENSGT00390000013228.e.b.g.b #28	ENSGT01100000263504.b.r.b	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000158211.u.a
Crab-eating macaque	MODERN SPECIES	16	ENSMFAG00000048413	ENSMFAG00000063851	ENSMFAG00000036456 #12	CTNND2 (ENSMFAG00000044186) #13	DNAH5 (ENSMFAG00000001076) #14	ENSMFAG00000057716	ENSMFAG00000035974 #15	ENSMFAG00000062808 #15	ENSMFAG00000054607	ENSMFAG00000064998	OTULINL (ENSMFAG00000037715) #16	OTULIN (ENSMFAG00000037873) #18	ANKH (ENSMFAG00000038859) #20	ENSMFAG00000063263	ENSMFAG00000060701	FBXL7 (ENSMFAG00000000432) #22	ZNF622 (ENSMFAG00000058196) #24	RETREG1 (ENSMFAG00000015961) #25	ENSMFAG00000044958 #26	ENSMFAG00000058675	ENSMFAG00000051530 #26	ENSMFAG00000051169	ENSMFAG00000062744 #27	ENSMFAG00000048201	ENSMFAG00000048030 #28	ENSMFAG00000061865	ENSMFAG00000064842 #28	ENSMFAG00000048587 #28	ENSMFAG00000020824 #28	ENSMFAG00000035474 #28	ENSMFAG00000061466
Rhesus	MODERN SPECIES	16	ROPN1L (ENSMMUG00000060969) #10	ANKRD33B (ENSMMUG00000001130) #11	DAP (ENSMMUG00000001131) #12	CTNND2 (ENSMMUG00000023419) #13	DNAH5 (ENSMMUG00000011026) #14	ENSMMUG00000061003	TRIO (ENSMMUG00000015489) #15	ENSMMUG00000050304	ENSMMUG00000064349	ENSMMUG00000065193	OTULINL (ENSMMUG00000005665) #16	OTULIN (ENSMMUG00000059554) #18	ENSMMUG00000060654	ANKH (ENSMMUG00000021942) #20	ENSMMUG00000059412	FBXL7 (ENSMMUG00000013364) #22	MARCHF11 (ENSMMUG00000007069) #23	ZNF622 (ENSMMUG00000055492) #24	RETREG1 (ENSMMUG00000001375) #25	MYO10 (ENSMMUG00000012672) #26	ENSMMUG00000062111	BASP1 (ENSMMUG00000061751) #27	ENSMMUG00000064602 #28	ENSMMUG00000059710 #28	ENSMMUG00000049919 #28	H3Y1 (ENSMMUG00000060891)	CDH18 (ENSMMUG00000004389)	ENSMMUG00000063679	ENSMMUG00000029743	ENSMMUG00000050051	ENSMMUG00000061125
Pig-tailed macaque	MODERN SPECIES	189							DNAH5 (ENSMNEG00000033291) #14	ENSMNEG00000041446	TRIO (ENSMNEG00000035913) #15	OTULINL (ENSMNEG00000035378) #16	ENSMNEG00000033826 #17	OTULIN (ENSMNEG00000028710) #18	ENSMNEG00000039192 #19	ANKH (ENSMNEG00000033750) #20	ENSMNEG00000032726	FBXL7 (ENSMNEG00000015203) #22	MARCHF11 (ENSMNEG00000014598) #23	ZNF622 (ENSMNEG00000036952) #24	RETREG1 (ENSMNEG00000041528) #25	MYO10 (ENSMNEG00000043997) #26	BASP1 (ENSMNEG00000023203) #27	ENSMNEG00000013688
Vervet Monkey	MODERN SPECIES	23	TAS2R1 (ENSCSAG00000018987)	ATPSCKMT (ENSCSAG00000017326)	CCT5 (ENSCSAG00000017323) #7	CMBL (ENSCSAG00000017321) #8	MARCHF6 (ENSCSAG00000017319) #9	ROPN1L (ENSCSAG00000017316) #10	ENSCSAG00000017314	ANKRD33B (ENSCSAG00000017312) #11	ENSCSAG00000017308 #12	CTNND2 (ENSCSAG00000017304) #13	DNAH5 (ENSCSAG00000017291) #14	TRIO (ENSCSAG00000017284) #15	OTULINL (ENSCSAG00000017275) #16	OTULIN (ENSCSAG00000017269) #18	ANKH (ENSCSAG00000017267) #20	FBXL7 (ENSCSAG00000017265) #22	MARCHF11 (ENSCSAG00000017263) #23	ZNF622 (ENSCSAG00000017262) #24	RETREG1 (ENSCSAG00000017260) #25	MYO10 (ENSCSAG00000017255) #26	BASP1 (ENSCSAG00000018988) #27	ENSCSAG00000018989 #28	ENSCSAG00000018990	ENSCSAG00000018991 #28	ENSCSAG00000017248	CDH18 (ENSCSAG00000017245)	CDH12 (ENSCSAG00000017239)	ENSCSAG00000017233	ENSCSAG00000017229	CDH10 (ENSCSAG00000017224)	ENSCSAG00000017221
Rhinopithecus	ANCESTRAL SPECIES	335							ENSGT00390000007084.c.a.d.c.a.b	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00940000154631.mb #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00860000135740 #19	ENSGT00910000147847	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00910000147515
Black snub-nosed monkey	MODERN SPECIES	1806																FBXL7 (ENSRBIG00000025869) #22	MARCHF11 (ENSRBIG00000038853) #23	ZNF622 (ENSRBIG00000026260) #24	RETREG1 (ENSRBIG00000036633) #25	MYO10 (ENSRBIG00000040026) #26
Golden snub-nosed monkey	MODERN SPECIES	1773							ENSRROG00000037267	DNAH5 (ENSRROG00000034442) #14	TRIO (ENSRROG00000036518) #15	OTULINL (ENSRROG00000029065) #16	ENSRROG00000022524 #17	OTULIN (ENSRROG00000028826) #18	ANKH (ENSRROG00000040288) #20	ENSRROG00000029425 #19	ENSRROG00000039150	FBXL7 (ENSRROG00000017801) #22	MARCHF11 (ENSRROG00000034909) #23
Hominoidea	ANCESTRAL SPECIES	8	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000012138.a.a.j.b	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148085	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b.j #28	ENSGT00390000013228.e.b.i.a #28	ENSGT01100000263504.b	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000158211.u.a	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052
Hominidae	ANCESTRAL SPECIES	7	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000012138.a.a.j.b	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148085	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b.j #28	ENSGT01100000263504.b.p	ENSGT00390000013228.e.b.i.b #28	ENSGT00390000013228.e.b.i.a #28	ENSGT01100000263504.b.o	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000158211.u.a	ENSGT00940000154187.a.a	ENSGT00940000160496.b
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	7	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000012138.a.a.j.b	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148085	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00860000135740 #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b.b	ENSGT00390000013228.e.b.i.a.a.a #28	ENSGT01100000263504.b.o	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000163405	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052
Gorilla	MODERN SPECIES	8	ENSGGOG00000038735	ANKRD33B (ENSGGOG00000002528) #11	ENSGGOG00000012480 #12	ENSGGOG00000042335	CTNND2 (ENSGGOG00000014843) #13	DNAH5 (ENSGGOG00000007206) #14	ENSGGOG00000043604	TRIO (ENSGGOG00000013607) #15	OTULINL (ENSGGOG00000014004) #16	ENSGGOG00000041699	OTULIN (ENSGGOG00000039258) #18	ENSGGOG00000036947 #19	ENSGGOG00000039201	ANKH (ENSGGOG00000015324) #20	ENSGGOG00000041512	FBXL7 (ENSGGOG00000011159) #22	ENSGGOG00000015876 #23	ZNF622 (ENSGGOG00000009831) #24	RETREG1 (ENSGGOG00000010613) #25	MYO10 (ENSGGOG00000007641) #26	BASP1 (ENSGGOG00000040563) #27	ENSGGOG00000024641	ENSGGOG00000037119 #28	ENSGGOG00000024293 #28	MPP2 (ENSGGOG00000041392)	CDH18 (ENSGGOG00000010981)	CDH12 (ENSGGOG00000016817)	ENSGGOG00000038517	PRDM9 (ENSGGOG00000024584)	ENSGGOG00000040189	CDH10 (ENSGGOG00000012457)
Homo/Pan group	ANCESTRAL SPECIES	8	ENSGT00390000014771.a	ENSGT00550000074988.u.b #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000012138.a.a.j.b	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b.o #13	ENSGT00940000155533.d #14	ENSGT00910000148085	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b.b	ENSGT00390000013228.e.b.i.a.a.a #28	ENSGT01100000263504.b.o	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000163405	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052
Human	MODERN SPECIES	17	SEMA5A (ENSG00000112902)	TAS2R1 (ENSG00000169777)	ATPSCKMT (ENSG00000150756)	CCT5 (ENSG00000150753) #7	CMBL (ENSG00000164237) #8	MARCHF6 (ENSG00000145495) #9	ROPN1L (ENSG00000145491) #10	ANKRD33B (ENSG00000164236) #11	DAP (ENSG00000112977)	CTNND2 (ENSG00000169862) #13	DNAH5 (ENSG00000039139) #14	TRIO (ENSG00000038382) #15	OTULINL (ENSG00000145569) #16	OTULIN (ENSG00000154124) #18	ANKH (ENSG00000154122) #20	FBXL7 (ENSG00000183580) #22	MARCHF11 (ENSG00000183654) #23	ZNF622 (ENSG00000173545) #24	RETREG1 (ENSG00000154153) #25	MYO10 (ENSG00000145555) #26	BASP1 (ENSG00000176788) #27	LINC02218 (ENSG00000249662) #28	H3Y2 (ENSG00000268799)	TAF11L2 (ENSG00000284373) #28	TAF11L3 (ENSG00000284439) #28	TAF11L4 (ENSG00000284283) #28	TAF11L5 (ENSG00000284234) #28	TAF11L6 (ENSG00000284042) #28	TAF11L7 (ENSG00000284465) #28	TAF11L8 (ENSG00000283967) #28	TAF11L9 (ENSG00000283988) #28
Pan	ANCESTRAL SPECIES	21	ENSGT00940000154574.c	ENSGT00940000154952.a.b.o #13	ENSGT00910000148267	ENSGT00940000154952.a.b.p #13	ENSGT00390000007084.c.a.d.c.a.b.b	ENSGT00940000155533.d #14	ENSGT00910000148085	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00950000183029.B.c.b.b.b	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00860000135740 #19	ENSGT00910000147847	ENSGT00940000153375.kb.b	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.a.b.b	ENSGT00940000157385	ENSGT00940000154828.k.a	ENSGT00900000141068.m.a.a	ENSGT00850000132411	ENSGT00390000014160	ENSGT00390000018225.B	ENSGT01050000244841.B.b	ENSGT00940000158982	ENSGT00390000016407
Chimpanzee	MODERN SPECIES	18	ROPN1L (ENSPTRG00000016728) #10	ANKRD33B (ENSPTRG00000016729) #11	ENSPTRG00000040212	CTNND2 (ENSPTRG00000016731) #13	ENSPTRG00000044329	DNAH5 (ENSPTRG00000016734) #14	TRIO (ENSPTRG00000016735) #15	ENSPTRG00000043022	OTULINL (ENSPTRG00000045722) #16	ENSPTRG00000045231 #17	ENSPTRG00000051935	OTULIN (ENSPTRG00000016738) #18	ANKH (ENSPTRG00000016739) #20	ENSPTRG00000043268 #19	ENSPTRG00000052184	FBXL7 (ENSPTRG00000016741) #22	MARCHF11 (ENSPTRG00000016742) #23	ZNF622 (ENSPTRG00000016743) #24	RETREG1 (ENSPTRG00000016744) #25	MYO10 (ENSPTRG00000016745) #26	BASP1 (ENSPTRG00000044904) #27	ENSPTRG00000050024	LINC02218 (ENSPTRG00000052795) #28	PCSK1 (ENSPTRG00000017091)	ELL2 (ENSPTRG00000017090)	GLRX (ENSPTRG00000044246)	RHOBTB3 (ENSPTRG00000017087)	SPATA9 (ENSPTRG00000017086)	RFESD (ENSPTRG00000017085)	GPR150 (ENSPTRG00000028773)	ARSK (ENSPTRG00000017084)
Bonobo	MODERN SPECIES	18	ENSPPAG00000033743	ENSPPAG00000036981 #13	ENSPPAG00000025352	DNAH5 (ENSPPAG00000038258) #14	TRIO (ENSPPAG00000042679) #15	ENSPPAG00000041606	OTULINL (ENSPPAG00000012785) #16	ENSPPAG00000033437 #17	ENSPPAG00000031191	OTULIN (ENSPPAG00000031497) #18	ANKH (ENSPPAG00000029143) #20	ENSPPAG00000021833 #19	ENSPPAG00000015929	ENSPPAG00000040662	ENSPPAG00000016923	FBXL7 (ENSPPAG00000020751) #22	ENSPPAG00000016393 #23	ZNF622 (ENSPPAG00000028322) #24	ENSPPAG00000035828 #25	MYO10 (ENSPPAG00000033643) #26	ENSPPAG00000004561	ENSPPAG00000042399 #28	PCSK1 (ENSPPAG00000037499)	ELL2 (ENSPPAG00000018384)	GLRX (ENSPPAG00000043613)	RHOBTB3 (ENSPPAG00000031638)	SPATA9 (ENSPPAG00000035429)	ENSPPAG00000032941	ARSK (ENSPPAG00000037483)	SKIC3 (ENSPPAG00000032676)	ENSPPAG00000044070
Orangutan	MODERN SPECIES	18	CCT5 (ENSPPYG00000015342) #7	CMBL (ENSPPYG00000015343) #8	MARCHF6 (ENSPPYG00000015344) #9	ENSPPYG00000015345 #10	ENSPPYG00000037234	ANKRD33B (ENSPPYG00000015346) #11	ENSPPYG00000039207 #12	CTNND2 (ENSPPYG00000015348) #13	ENSPPYG00000041438	ENSPPYG00000039629	DNAH5 (ENSPPYG00000015349) #14	TRIO (ENSPPYG00000015350) #15	OTULINL (ENSPPYG00000015351) #16	OTULIN (ENSPPYG00000031564) #18	ANKH (ENSPPYG00000015353) #20	FBXL7 (ENSPPYG00000015354) #22	ENSPPYG00000041039	MARCHF11 (ENSPPYG00000015355) #23	ZNF622 (ENSPPYG00000029803) #24	RETREG1 (ENSPPYG00000041318) #25	MYO10 (ENSPPYG00000015356) #26	BASP1 (ENSPPYG00000015357) #27	H3Y2 (ENSPPYG00000039218)	ENSPPYG00000038058 #28	ENSPPYG00000037527 #28	ENSPPYG00000031629	ENSPPYG00000040099 #28	ENSPPYG00000033880 #28	H3Y1 (ENSPPYG00000032677)	CDH18 (ENSPPYG00000015363)	ENSPPYG00000041008
Gibbon	MODERN SPECIES	21	ANKRD33B (ENSNLEG00000011694) #11	DAP (ENSNLEG00000011695)	CTNND2 (ENSNLEG00000011705) #13	DNAH5 (ENSNLEG00000030158) #14	TRIO (ENSNLEG00000011777) #15	ENSNLEG00000033622	OTULINL (ENSNLEG00000011842) #16	ENSNLEG00000018902	ENSNLEG00000036186 #17	OTULIN (ENSNLEG00000011846) #18	ANKH (ENSNLEG00000011853) #20	ENSNLEG00000035747	ENSNLEG00000030862	ENSNLEG00000031835	ENSNLEG00000035266 #21	FBXL7 (ENSNLEG00000011867) #22	MARCHF11 (ENSNLEG00000032192) #23	ZNF622 (ENSNLEG00000011876) #24	ENSNLEG00000011893	RETREG1 (ENSNLEG00000030442) #25	MYO10 (ENSNLEG00000011899) #26	ENSNLEG00000018903	BASP1 (ENSNLEG00000011959) #27	ENSNLEG00000031258	ENSNLEG00000035479	CDH18 (ENSNLEG00000011961)	ENSNLEG00000029518	ENSNLEG00000032705	ENSNLEG00000011990	ENSNLEG00000032467	ENSNLEG00000032385
Platyrrhini	ANCESTRAL SPECIES	7	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183.l #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047.a #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00910000147292	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Cebidae	ANCESTRAL SPECIES	6	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183.l #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00910000148358	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047.a #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00910000147292	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00940000160263
Cebidae_a	ANCESTRAL SPECIES	82	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183.l #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000164737 #12	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d.i #14	ENSGT00910000148358	ENSGT00940000155533.d.j #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047.a #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00940000157512	ENSGT00940000154187.a.b
Capuchin	MODERN SPECIES	35											ENSCCAG00000030740 #14	TRIO (ENSCCAG00000027836) #15	OTULINL (ENSCCAG00000037191) #16	OTULIN (ENSCCAG00000025591) #18	ANKH (ENSCCAG00000011430) #20	FBXL7 (ENSCCAG00000027611) #22	MARCHF11 (ENSCCAG00000024495) #23	ENSCCAG00000023780	ENSCCAG00000032090	ZNF622 (ENSCCAG00000035492) #24	RETREG1 (ENSCCAG00000037769) #25	MYO10 (ENSCCAG00000031156) #26	CDH18 (ENSCCAG00000025772)	CDH12 (ENSCCAG00000019124)
Bolivian squirrel monkey	MODERN SPECIES	92	ATPSCKMT (ENSSBOG00000021099)	CCT5 (ENSSBOG00000022734) #7	CMBL (ENSSBOG00000021093) #8	MARCHF6 (ENSSBOG00000020372) #9	ROPN1L (ENSSBOG00000021335) #10	ENSSBOG00000032547 #11	ENSSBOG00000026915 #12	ENSSBOG00000025627	CTNND2 (ENSSBOG00000024406) #13	DNAH5 (ENSSBOG00000021905) #14	ENSSBOG00000011358	TRIO (ENSSBOG00000029501) #15	OTULINL (ENSSBOG00000027772) #16	OTULIN (ENSSBOG00000026879) #18	ANKH (ENSSBOG00000024577) #20	FBXL7 (ENSSBOG00000031131) #22	MARCHF11 (ENSSBOG00000035655) #23
Marmoset	MODERN SPECIES	11	ANKRD33B (ENSCJAG00000009224) #11	ENSCJAG00000046611 #12	ENSCJAG00000085149	CTNND2 (ENSCJAG00000009238) #13	ENSCJAG00000004019	ENSCJAG00000080282	ENSCJAG00000074642	ENSCJAG00000071150	ENSCJAG00000076372	DNAH5 (ENSCJAG00000009326) #14	ENSCJAG00000072293	TRIO (ENSCJAG00000010904) #15	OTULINL (ENSCJAG00000010893) #16	OTULIN (ENSCJAG00000010884) #18	ANKH (ENSCJAG00000010839) #20	FBXL7 (ENSCJAG00000010823) #22	MARCHF11 (ENSCJAG00000047285) #23	RETREG1 (ENSCJAG00000042515) #25	MYO10 (ENSCJAG00000011831) #26	ENSCJAG00000053651	BASP1 (ENSCJAG00000046235) #27	ENSCJAG00000082447	ENSCJAG00000085722	ENSCJAG00000081133	ENSCJAG00000031497	CDH18 (ENSCJAG00000011808)	ENSCJAG00000080182	ENSCJAG00000076231	ENSCJAG00000047554	ENSCJAG00000083660	ENSCJAG00000072646
Mas night monkey	MODERN SPECIES	837	ATPSCKMT (ENSANAG00000022943)	CCT5 (ENSANAG00000026097) #7	CMBL (ENSANAG00000029875) #8	MARCHF6 (ENSANAG00000037794) #9	ROPN1L (ENSANAG00000021831) #10	ANKRD33B (ENSANAG00000027592) #11	ENSANAG00000033682 #12	CTNND2 (ENSANAG00000036393) #13	DNAH5 (ENSANAG00000030588) #14	ENSANAG00000019517	TRIO (ENSANAG00000026493) #15	ENSANAG00000025539	OTULINL (ENSANAG00000035304) #16	OTULIN (ENSANAG00000003357) #18	ANKH (ENSANAG00000019438) #20	FBXL7 (ENSANAG00000028663) #22	ENSANAG00000030785	MARCHF11 (ENSANAG00000029893) #23	ENSANAG00000031551 #24	RETREG1 (ENSANAG00000036598) #25	MYO10 (ENSANAG00000036842) #26	ENSANAG00000019238	CDH18 (ENSANAG00000030633)	CDH12 (ENSANAG00000034476)	CDH10 (ENSANAG00000028080)	ENSANAG00000003887	ENSANAG00000036366
Tarsier	MODERN SPECIES	5255																FBXL7 (ENSTSYG00000028067) #22
Strepsirrhini	ANCESTRAL SPECIES	5	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00390000000950.c.a.n	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00940000160263
Lemuriformes	ANCESTRAL SPECIES	47	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00390000000950.c.a.n	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00940000160263
Mouse lemur	MODERN SPECIES	3	ENSMICG00000010134	ATPSCKMT (ENSMICG00000043453)	CCT5 (ENSMICG00000000530) #7	CMBL (ENSMICG00000000533) #8	MARCHF6 (ENSMICG00000010632) #9	ROPN1L (ENSMICG00000035924) #10	ANKRD33B (ENSMICG00000017147) #11	DAP (ENSMICG00000044020)	CTNND2 (ENSMICG00000013931) #13	DNAH5 (ENSMICG00000015344) #14	TRIO (ENSMICG00000015477) #15	ENSMICG00000017363 #16	OTULIN (ENSMICG00000017364) #18	ANKH (ENSMICG00000017365) #20	ENSMICG00000004970	FBXL7 (ENSMICG00000010535) #22	ENSMICG00000047304 #23	ZNF622 (ENSMICG00000010544) #24	RETREG1 (ENSMICG00000010548) #25	MYO10 (ENSMICG00000010556) #26	ENSMICG00000046999 #27	ENSMICG00000035529	ENSMICG00000028486	TNPO1 (ENSMICG00000008468)	ZNF366 (ENSMICG00000026789)	ENSMICG00000043984	PTCD2 (ENSMICG00000004535)	MRPS27 (ENSMICG00000004527)	MAP1B (ENSMICG00000038435)	CARTPT (ENSMICG00000038285)	MCCC2 (ENSMICG00000000849)
Lemuriformes_a	ANCESTRAL SPECIES	215										ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00390000000950.c.a.n	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b
Greater bamboo lemur	MODERN SPECIES	62										TRIO (ENSPSMG00000016041) #15	OTULINL (ENSPSMG00000015913) #16	OTULIN (ENSPSMG00000015862) #18	ANKH (ENSPSMG00000015827) #20	ENSPSMG00000015787	ENSPSMG00000015782	FBXL7 (ENSPSMG00000015771) #22	MARCHF11 (ENSPSMG00000015740) #23	ZNF622 (ENSPSMG00000015735) #24	RETREG1 (ENSPSMG00000015709) #25	ENSPSMG00000015658	MYO10 (ENSPSMG00000015616) #26	BASP1 (ENSPSMG00000015527) #27	CDH18 (ENSPSMG00000015506)	CDH12 (ENSPSMG00000015451)	ENSPSMG00000015381	ENSPSMG00000015373	ENSPSMG00000015369	CDH10 (ENSPSMG00000015354)
Coquerels sifaka	MODERN SPECIES	52										DNAH5 (ENSPCOG00000027561) #14	TRIO (ENSPCOG00000022681) #15	OTULINL (ENSPCOG00000023521) #16	OTULIN (ENSPCOG00000020862) #18	ANKH (ENSPCOG00000012875) #20	ENSPCOG00000021858	FBXL7 (ENSPCOG00000016187) #22	MARCHF11 (ENSPCOG00000018629) #23	ZNF622 (ENSPCOG00000020267) #24	RETREG1 (ENSPCOG00000022290) #25	MYO10 (ENSPCOG00000014161) #26	ENSPCOG00000016592
Bushbaby	MODERN SPECIES	148	ENSOGAG00000024134	ATPSCKMT (ENSOGAG00000003583)	CCT5 (ENSOGAG00000029948) #7	CMBL (ENSOGAG00000016909) #8	MARCHF6 (ENSOGAG00000002304) #9	ROPN1L (ENSOGAG00000002306) #10	ANKRD33B (ENSOGAG00000009776) #11	ENSOGAG00000034923	CTNND2 (ENSOGAG00000005411) #13	DNAH5 (ENSOGAG00000009433) #14	TRIO (ENSOGAG00000014252) #15	OTULINL (ENSOGAG00000014270) #16	OTULIN (ENSOGAG00000008440) #18	ANKH (ENSOGAG00000006664) #20	ENSOGAG00000024319	FBXL7 (ENSOGAG00000003172) #22	MARCHF11 (ENSOGAG00000011673) #23	ZNF622 (ENSOGAG00000014834) #24	RETREG1 (ENSOGAG00000014839) #25	MYO10 (ENSOGAG00000014841) #26	CDH18 (ENSOGAG00000004532)	CDH12 (ENSOGAG00000012968)	ENSOGAG00000003705	ENSOGAG00000012971	ENSOGAG00000030812	CDH10 (ENSOGAG00000008502)	ENSOGAG00000026618	ENSOGAG00000028406	CDH9 (ENSOGAG00000014717)	ENSOGAG00000034191	ENSOGAG00000026429
Euarchontoglires_A	ANCESTRAL SPECIES	8	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Tree shrew	MODERN SPECIES	4452																FBXL7 (ENSTBEG00000012786) #22	ENSTBEG00000012912 #23
Glires	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Lagomorpha	ANCESTRAL SPECIES	125			ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT01050000246290	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00940000160263
Rabbit	MODERN SPECIES	2	ROPN1L (ENSOCUG00000005753) #10	ANKRD33B (ENSOCUG00000002595) #11	ENSOCUG00000010666	CTNND2 (ENSOCUG00000012709) #13	ENSOCUG00000035464	ENSOCUG00000036713	ENSOCUG00000027984	DNAH5 (ENSOCUG00000010205) #14	TRIO (ENSOCUG00000012986) #15	ENSOCUG00000029747	OTULINL (ENSOCUG00000017585) #16	OTULIN (ENSOCUG00000012048) #18	ANKH (ENSOCUG00000012051) #20	ENSOCUG00000022356	ENSOCUG00000025979	FBXL7 (ENSOCUG00000004406) #22	ENSOCUG00000035790	MARCHF11 (ENSOCUG00000004408) #23	ZNF622 (ENSOCUG00000017508) #24	RETREG1 (ENSOCUG00000017516) #25	MYO10 (ENSOCUG00000017519) #26	BASP1 (ENSOCUG00000039590) #27	ENSOCUG00000024067 #17	ENSOCUG00000011274 #28	ENSOCUG00000030287	ENSOCUG00000008955	ENSOCUG00000026247	CDH18 (ENSOCUG00000017732)	CDH12 (ENSOCUG00000007832)	ENSOCUG00000032366	ENSOCUG00000033301
Pika	MODERN SPECIES	3959																FBXL7 (ENSOPRG00000008246) #22
Rodentia	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Long-tailed chinchilla	MODERN SPECIES	133		ENSCLAG00000009724	ATPSCKMT (ENSCLAG00000007449)	CCT5 (ENSCLAG00000008074) #7	CMBL (ENSCLAG00000012029) #8	MARCHF6 (ENSCLAG00000013772) #9	ROPN1L (ENSCLAG00000007892) #10	ANKRD33B (ENSCLAG00000008394) #11	DAP (ENSCLAG00000008486)	CTNND2 (ENSCLAG00000010220) #13	DNAH5 (ENSCLAG00000013894) #14	TRIO (ENSCLAG00000009822) #15	OTULINL (ENSCLAG00000015072) #16	OTULIN (ENSCLAG00000012182) #18	ANKH (ENSCLAG00000011007) #20	FBXL7 (ENSCLAG00000014128) #22	MARCHF11 (ENSCLAG00000010027) #23	ZNF622 (ENSCLAG00000011494) #24	RETREG1 (ENSCLAG00000014211) #25	MYO10 (ENSCLAG00000014503) #26	BASP1 (ENSCLAG00000015086) #27	CDH18 (ENSCLAG00000011951)	CDH12 (ENSCLAG00000013527)	CDH10 (ENSCLAG00000011884)	CDH9 (ENSCLAG00000008482)	CDH6 (ENSCLAG00000007448)	DROSHA (ENSCLAG00000013048)	C5orf22 (ENSCLAG00000007169)	PDZD2 (ENSCLAG00000007256)	GOLPH3 (ENSCLAG00000008270)	MTMR12 (ENSCLAG00000008003)
Degu	MODERN SPECIES	248									ENSODEG00000018704	TRIO (ENSODEG00000001585) #15	ENSODEG00000001372 #16	OTULIN (ENSODEG00000001281) #18	ANKH (ENSODEG00000001253) #20	ENSODEG00000018653	ENSODEG00000001227	FBXL7 (ENSODEG00000001152) #22	MARCHF11 (ENSODEG00000001708) #23	ENSODEG00000001594 #24	RETREG1 (ENSODEG00000001553) #25	ENSODEG00000001536	MYO10 (ENSODEG00000000934) #26	ENSODEG00000000634
Guinea pig	MODERN SPECIES	55	ENSCPOG00000005307	ENSCPOG00000038189	ENSCPOG00000039180	ATPSCKMT (ENSCPOG00000002022)	CCT5 (ENSCPOG00000002023) #7	CMBL (ENSCPOG00000002024) #8	MARCHF6 (ENSCPOG00000000213) #9	ROPN1L (ENSCPOG00000032598) #10	ENSCPOG00000040408	CTNND2 (ENSCPOG00000023221) #13	DNAH5 (ENSCPOG00000015078) #14	TRIO (ENSCPOG00000009097) #15	OTULINL (ENSCPOG00000008574) #16	OTULIN (ENSCPOG00000012126) #18	ANKH (ENSCPOG00000012339) #20	FBXL7 (ENSCPOG00000013129) #22	MARCHF11 (ENSCPOG00000026502) #23	ZNF622 (ENSCPOG00000002276) #24	RETREG1 (ENSCPOG00000002278) #25	MYO10 (ENSCPOG00000004645) #26	BASP1 (ENSCPOG00000040611) #27	CDH18 (ENSCPOG00000015587)
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000004654 #10	ANKRD33B (ENSHGLG00000036584) #11	ENSHGLG00000015867	ENSHGLG00000007547 #13	ENSHGLG00000032946	ENSHGLG00000034637	ENSHGLG00000017230	ENSHGLG00000034661	ENSHGLG00000004104 #14	ENSHGLG00000004346 #15	OTULINL (ENSHGLG00000007364) #16	ENSHGLG00000040674	OTULIN (ENSHGLG00000008326) #18	ANKH (ENSHGLG00000009005) #20	ENSHGLG00000049744	FBXL7 (ENSHGLG00000039624) #22	ENSHGLG00000005413	ENSHGLG00000047002 #23	ENSHGLG00000042572	ZNF622 (ENSHGLG00000040123) #24	RETREG1 (ENSHGLG00000033002) #25	MYO10 (ENSHGLG00000006481) #26	ENSHGLG00000041373 #27	ENSHGLG00000040982	ENSHGLG00000000095	ENSHGLG00000011908	ENSHGLG00000003890	ENSHGLG00000003675	ENSHGLG00000036098	ENSHGLG00000040270	ENSHGLG00000019942
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Marmotini	ANCESTRAL SPECIES	75	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23
Alpin marmot	MODERN SPECIES	27	CCT5 (ENSMMMG00000016876) #7	CMBL (ENSMMMG00000016882) #8	MARCHF6 (ENSMMMG00000016892) #9	ROPN1L (ENSMMMG00000016907) #10	ANKRD33B (ENSMMMG00000016918) #11	DAP (ENSMMMG00000016933)	CTNND2 (ENSMMMG00000016961) #13	ENSMMMG00000017027	ENSMMMG00000017037	DNAH5 (ENSMMMG00000017061) #14	ENSMMMG00000017112 #15	ENSMMMG00000017138 #15	OTULINL (ENSMMMG00000017171) #16	OTULIN (ENSMMMG00000017186) #18	ANKH (ENSMMMG00000017192) #20	FBXL7 (ENSMMMG00000017213) #22	ENSMMMG00000017221	CCDC152 (ENSMMMG00000017224)	GHR (ENSMMMG00000017240)	FBXO4 (ENSMMMG00000017291)	RIMOC1 (ENSMMMG00000017296)	ENSMMMG00000017300	PLCXD3 (ENSMMMG00000017352)	C6 (ENSMMMG00000017358)	MROH2B (ENSMMMG00000017369)	ENSMMMG00000017396	C7 (ENSMMMG00000017398)	CARD6 (ENSMMMG00000017776)	RPL37 (ENSMMMG00000017779)	PRKAA1 (ENSMMMG00000017787)	TTC33 (ENSMMMG00000017819)
Marmotini_b	ANCESTRAL SPECIES	157	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23
Squirrel	MODERN SPECIES	265											DNAH5 (ENSSTOG00000012887) #14	TRIO (ENSSTOG00000012982) #15	OTULINL (ENSSTOG00000012967) #16	OTULIN (ENSSTOG00000014627) #18	ANKH (ENSSTOG00000014630) #20	FBXL7 (ENSSTOG00000026709) #22	MARCHF11 (ENSSTOG00000015947) #23
Arctic ground squirrel	MODERN SPECIES	101									CTNND2 (ENSUPAG00010018407) #13	DNAH5 (ENSUPAG00010018491) #14	TRIO (ENSUPAG00010018613) #15	OTULINL (ENSUPAG00010018805) #16	OTULIN (ENSUPAG00010018826) #18	ANKH (ENSUPAG00010018838) #20	ENSUPAG00010018857	FBXL7 (ENSUPAG00010018865) #22	MARCHF11 (ENSUPAG00010018880) #23
Eurasian red squirrel	MODERN SPECIES	15	ATPSCKMT (ENSSVLG00005005707)	ENSSVLG00005005577 #7	CMBL (ENSSVLG00005005537) #8	ENSSVLG00005005507	ENSSVLG00005005490 ##9	ROPN1L (ENSSVLG00005005364) #10	ANKRD33B (ENSSVLG00005005329) #11	DAP (ENSSVLG00005005317)	CTNND2 (ENSSVLG00005005089) #13	DNAH5 (ENSSVLG00005004822) #14	ENSSVLG00005004695 #15	ENSSVLG00005004640 #15	OTULINL (ENSSVLG00005004612) #16	OTULIN (ENSSVLG00005004587) #18	ANKH (ENSSVLG00005004559) #20	FBXL7 (ENSSVLG00005004530) #22	MARCHF11 (ENSSVLG00005004512) #23	ZNF622 (ENSSVLG00005004487) #24	RETREG1 (ENSSVLG00005004440) #25	MYO10 (ENSSVLG00005004378) #26	ENSSVLG00005004321 #27	ENSSVLG00005004307	CDH18 (ENSSVLG00005004254)	ENSSVLG00005004221	ENSSVLG00005004196	CDH12 (ENSSVLG00005010824)	ENSSVLG00005010760	ENSSVLG00005010723	ENSSVLG00005010682	CDH10 (ENSSVLG00005010571)	ENSSVLG00005010536
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Kangaroo rat	MODERN SPECIES	340	Fastkd3 (ENSDORG00000028341)	ENSDORG00000030090	Sema5a (ENSDORG00000009214)	Cct5 (ENSDORG00000008787) #7	Cmbl (ENSDORG00000008783) #8	Marchf6 (ENSDORG00000009942) #9	Ropn1l (ENSDORG00000004133) #10	Dap (ENSDORG00000023386)	ENSDORG00000028473 #13	ENSDORG00000029046	Dnah5 (ENSDORG00000012492) #14	Trio (ENSDORG00000011919) #15	Otulinl (ENSDORG00000003148) #16	Otulin (ENSDORG00000003904) #18	Ank (ENSDORG00000001662) #20	Fbxl7 (ENSDORG00000030041) #22	Marchf11 (ENSDORG00000007351) #23	Zfp622 (ENSDORG00000000939) #24	Retreg1 (ENSDORG00000000940) #25	Myo10 (ENSDORG00000005883) #26	ENSDORG00000026313	Cdh18 (ENSDORG00000009490)	ENSDORG00000001664	Cdh10 (ENSDORG00000007213)	Cdh9 (ENSDORG00000002684)	ENSDORG00000028346
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Muroidea	ANCESTRAL SPECIES	4	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a.k	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a.k	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Golden Hamster	MODERN SPECIES	729											Dnah5 (ENSMAUG00000000528) #14	Trio (ENSMAUG00000006892) #15	ENSMAUG00000007540 #16	Otulin (ENSMAUG00000004691) #18	Ank (ENSMAUG00000000192) #20	Fbxl7 (ENSMAUG00000002455) #22	Marchf11 (ENSMAUG00000019378) #23	Zfp622 (ENSMAUG00000010395) #24	Retreg1 (ENSMAUG00000000079) #25	Myo10 (ENSMAUG00000018170) #26	Cdh18 (ENSMAUG00000016819)	Cdh12 (ENSMAUG00000014852)
Chinese hamster chok1gshd	MODERN SPECIES	1	Cmbl (ENSCGRG00001002936) #8	Marchf6 (ENSCGRG00001001973) #9	Ropn1l (ENSCGRG00001000818) #10	Ankrd33b (ENSCGRG00001016919) #11	Dap (ENSCGRG00001007075)	ENSCGRG00001009079	Ctnnd2 (ENSCGRG00001012344) #13	ENSCGRG00001009256	ENSCGRG00001008572	Dnah5 (ENSCGRG00001002726) #14	ENSCGRG00001007408	Trio (ENSCGRG00001018514) #15	Otulinl (ENSCGRG00001013918) #16	Otulin (ENSCGRG00001009097) #18	Ank (ENSCGRG00001007186) #20	Fbxl7 (ENSCGRG00001002330) #22	Marchf11 (ENSCGRG00001000995) #23	Zfp622 (ENSCGRG00001024661) #24	Retreg1 (ENSCGRG00001003409) #25	Myo10 (ENSCGRG00001006922) #26	Basp1 (ENSCGRG00001010849) #27	Cdh18 (ENSCGRG00001012079)	Cdh12 (ENSCGRG00001015709)	Cdh10 (ENSCGRG00001001483)	Cdh9 (ENSCGRG00001007635)	ENSCGRG00001006251	ENSCGRG00001013307	Cdh6 (ENSCGRG00001014466)	Drosha (ENSCGRG00001008885)	6030458C11Rik (ENSCGRG00001024155)	ENSCGRG00001007160
Cricetidae_B	ANCESTRAL SPECIES	37	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a.k	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Prairie vole	MODERN SPECIES	6	Atpsckmt (ENSMOCG00000010214)	Cct5 (ENSMOCG00000011025) #7	Cmbl (ENSMOCG00000000662) #8	Marchf6 (ENSMOCG00000005447) #9	Ropn1l (ENSMOCG00000019170) #10	Ankrd33b (ENSMOCG00000012066) #11	Dap (ENSMOCG00000007932)	ENSMOCG00000008873	Ctnnd2 (ENSMOCG00000011727) #13	Dnah5 (ENSMOCG00000002151) #14	Trio (ENSMOCG00000017194) #15	Otulinl (ENSMOCG00000014807) #16	Otulin (ENSMOCG00000018018) #18	Ank (ENSMOCG00000015187) #20	ENSMOCG00000003518	Fbxl7 (ENSMOCG00000022587) #22	Marchf11 (ENSMOCG00000005112) #23	ENSMOCG00000014111 #24	Retreg1 (ENSMOCG00000022687) #25	Myo10 (ENSMOCG00000001624) #26	Basp1 (ENSMOCG00000001482) #27	Cdh18 (ENSMOCG00000016086)	Cdh12 (ENSMOCG00000001651)	Cdh10 (ENSMOCG00000012651)	Cdh9 (ENSMOCG00000000711)	ENSMOCG00000009877	ENSMOCG00000009545	Cdh6 (ENSMOCG00000016401)	Drosha (ENSMOCG00000015044)	6030458C11Rik (ENSMOCG00000021733)	ENSMOCG00000022274
Northern American deer mouse	MODERN SPECIES	6	ENSPEMG00000022370 #7	Cmbl (ENSPEMG00000023901) #8	Marchf6 (ENSPEMG00000023219) #9	Ropn1l (ENSPEMG00000021994) #10	Ankrd33b (ENSPEMG00000022398) #11	Dap (ENSPEMG00000030453)	Ctnnd2 (ENSPEMG00000023801) #13	ENSPEMG00000030112	Dnah5 (ENSPEMG00000021827) #14	Trio (ENSPEMG00000023464) #15	ENSPEMG00000029934	Otulinl (ENSPEMG00000021713) #16	Otulin (ENSPEMG00000021987) #18	Ank (ENSPEMG00000021948) #20	ENSPEMG00000028925	Fbxl7 (ENSPEMG00000019691) #22	Marchf11 (ENSPEMG00000020080) #23	Zfp622 (ENSPEMG00000019901) #24	Retreg1 (ENSPEMG00000000999) #25	Myo10 (ENSPEMG00000019555) #26	Cdh18 (ENSPEMG00000019662)	Cdh12 (ENSPEMG00000019791)	ENSPEMG00000009396	ENSPEMG00000025057	Cdh6 (ENSPEMG00000000108)	ENSPEMG00000030570	Drosha (ENSPEMG00000000607)	6030458C11Rik (ENSPEMG00000010726)	Pdzd2 (ENSPEMG00000020494)	Golph3 (ENSPEMG00000028341)	Mtmr12 (ENSPEMG00000010153)
Murinae	ANCESTRAL SPECIES	24	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00860000135775
Mus	ANCESTRAL SPECIES	22	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00860000135775
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00860000135677	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a.i	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a
Ryukyu mouse	MODERN SPECIES	6	Sema5a (MGP_CAROLIEiJ_G0019715)	Tas2r119 (MGP_CAROLIEiJ_G0019714)	Atpsckmt (MGP_CAROLIEiJ_G0019713)	Cct5 (MGP_CAROLIEiJ_G0019712) #7	Cmbl (MGP_CAROLIEiJ_G0019711) #8	Marchf6 (MGP_CAROLIEiJ_G0019710) #9	Ropn1l (MGP_CAROLIEiJ_G0019709) #10	Ankrd33b (MGP_CAROLIEiJ_G0019708) #11	Dap (MGP_CAROLIEiJ_G0019707)	Ctnnd2 (MGP_CAROLIEiJ_G0019706) #13	Dnah5 (MGP_CAROLIEiJ_G0019705) #14	Trio (MGP_CAROLIEiJ_G0019704) #15	Otulinl (MGP_CAROLIEiJ_G0019703) #16	Otulin (MGP_CAROLIEiJ_G0019702) #18	Ank (MGP_CAROLIEiJ_G0019701) #20	Fbxl7 (MGP_CAROLIEiJ_G0019700) #22	MGP_CAROLIEiJ_G0019699 #23	Zfp622 (MGP_CAROLIEiJ_G0019698) #24	Retreg1 (MGP_CAROLIEiJ_G0019697) #25	Myo10 (MGP_CAROLIEiJ_G0019696) #26	MGP_CAROLIEiJ_G0019695	Basp1 (MGP_CAROLIEiJ_G0019694) #27	MGP_CAROLIEiJ_G0019693	Cdh18 (MGP_CAROLIEiJ_G0019692)	Cdh12 (MGP_CAROLIEiJ_G0019691)	Cdh10 (MGP_CAROLIEiJ_G0019690)	Cdh9 (MGP_CAROLIEiJ_G0019689)	Cdh6 (MGP_CAROLIEiJ_G0019688)	Drosha (MGP_CAROLIEiJ_G0019687)	6030458C11Rik (MGP_CAROLIEiJ_G0019686)	Pdzd2 (MGP_CAROLIEiJ_G0019685)
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00860000135677	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00390000005330.cb	ENSGT00940000154187.a.a.i	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749
Mus_C	ANCESTRAL SPECIES	28	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00860000135677	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00390000005330.cb	ENSGT00940000154187.a.a.i	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749
Steppe mouse	MODERN SPECIES	3249											Dnah5 (ENSMSIG00000020379) #14	Trio (ENSMSIG00000020539) #15	Otulinl (ENSMSIG00000020899) #16	Otulin (ENSMSIG00000020973) #18	Ank (ENSMSIG00000020995) #20	Fbxl7 (ENSMSIG00000021074) #22	Marchf11 (ENSMSIG00000021111) #23	ENSMSIG00000021134	ENSMSIG00000021139	Zfp622 (ENSMSIG00000021146) #24	Retreg1 (ENSMSIG00000021158) #25	Myo10 (ENSMSIG00000021199) #26	ENSMSIG00000021319
spretus	MODERN SPECIES	6	Atpsckmt (MGP_SPRETEiJ_G0020609)	Cct5 (MGP_SPRETEiJ_G0020608) #7	Cmbl (MGP_SPRETEiJ_G0020607) #8	Marchf6 (MGP_SPRETEiJ_G0020606) #9	Ropn1l (MGP_SPRETEiJ_G0020605) #10	Ankrd33b (MGP_SPRETEiJ_G0020604) #11	MGP_SPRETEiJ_G0020603	Dap (MGP_SPRETEiJ_G0020602)	Ctnnd2 (MGP_SPRETEiJ_G0020601) #13	Dnah5 (MGP_SPRETEiJ_G0020600) #14	MGP_SPRETEiJ_G0020599	Trio (MGP_SPRETEiJ_G0020598) #15	Otulinl (MGP_SPRETEiJ_G0020597) #16	Otulin (MGP_SPRETEiJ_G0020596) #18	Ank (MGP_SPRETEiJ_G0020595) #20	Fbxl7 (MGP_SPRETEiJ_G0020594) #22	Marchf11 (MGP_SPRETEiJ_G0020593) #23	Zfp622 (MGP_SPRETEiJ_G0020592) #24	Retreg1 (MGP_SPRETEiJ_G0020591) #25	Myo10 (MGP_SPRETEiJ_G0020590) #26	MGP_SPRETEiJ_G0020589	Basp1 (MGP_SPRETEiJ_G0020588) #27	MGP_SPRETEiJ_G0020587	Cdh18 (MGP_SPRETEiJ_G0020586)	Cdh12 (MGP_SPRETEiJ_G0020585)	Acot10 (MGP_SPRETEiJ_G0020584)	Cdh10 (MGP_SPRETEiJ_G0020583)	Cdh9 (MGP_SPRETEiJ_G0020582)	Cdh6 (MGP_SPRETEiJ_G0020581)	Drosha (MGP_SPRETEiJ_G0020580)	6030458C11Rik (MGP_SPRETEiJ_G0020579)
Mouse	MODERN SPECIES	6	Sema5a (ENSMUSG00000022231)	Tas2r119 (ENSMUSG00000045267)	Atpsckmt (ENSMUSG00000039065)	Cct5 (ENSMUSG00000022234) #7	Cmbl (ENSMUSG00000022235) #8	Marchf6 (ENSMUSG00000039100) #9	Ropn1l (ENSMUSG00000022236) #10	Ankrd33b (ENSMUSG00000022237) #11	Dap (ENSMUSG00000039168)	Ctnnd2 (ENSMUSG00000022240) #13	Dnah5 (ENSMUSG00000022262) #14	Trio (ENSMUSG00000022263) #15	Otulinl (ENSMUSG00000056069) #16	Otulin (ENSMUSG00000046034) #18	Ank (ENSMUSG00000022265) #20	Fbxl7 (ENSMUSG00000043556) #22	Marchf11 (ENSMUSG00000022269) #23	Zfp622 (ENSMUSG00000052253) #24	Retreg1 (ENSMUSG00000022270) #25	Myo10 (ENSMUSG00000022272) #26	Basp1 (ENSMUSG00000045763) #27	Cdh18 (ENSMUSG00000040420)	Acot10 (ENSMUSG00000047565)	Cdh12 (ENSMUSG00000040452)	Cdh10 (ENSMUSG00000022321)	Cdh9 (ENSMUSG00000025370)	Cdh6 (ENSMUSG00000039385)	Drosha (ENSMUSG00000022191)	6030458C11Rik (ENSMUSG00000022195)	Pdzd2 (ENSMUSG00000022197)	Golph3 (ENSMUSG00000022200)
Shrew mouse	MODERN SPECIES	2	MGP_PahariEiJ_G0016091	Tas2r119 (MGP_PahariEiJ_G0016090)	Atpsckmt (MGP_PahariEiJ_G0016089)	MGP_PahariEiJ_G0016088 #7	Cmbl (MGP_PahariEiJ_G0016087) #8	Marchf6 (MGP_PahariEiJ_G0016086) #9	Ropn1l (MGP_PahariEiJ_G0016085) #10	Ankrd33b (MGP_PahariEiJ_G0016084) #11	Dap (MGP_PahariEiJ_G0016083)	Ctnnd2 (MGP_PahariEiJ_G0016082) #13	Dnah5 (MGP_PahariEiJ_G0016081) #14	Trio (MGP_PahariEiJ_G0016080) #15	Otulinl (MGP_PahariEiJ_G0016079) #16	Otulin (MGP_PahariEiJ_G0016078) #18	Ank (MGP_PahariEiJ_G0016077) #20	Fbxl7 (MGP_PahariEiJ_G0016076) #22	Marchf11 (MGP_PahariEiJ_G0016075) #23	Zfp622 (MGP_PahariEiJ_G0016074) #24	Retreg1 (MGP_PahariEiJ_G0016073) #25	Myo10 (MGP_PahariEiJ_G0016072) #26	MGP_PahariEiJ_G0016071	Basp1 (MGP_PahariEiJ_G0016070) #27	MGP_PahariEiJ_G0016069	Cdh18 (MGP_PahariEiJ_G0016068)	Cdh12 (MGP_PahariEiJ_G0016067)	Cdh10 (MGP_PahariEiJ_G0016066)	Cdh9 (MGP_PahariEiJ_G0016065)	Cdh6 (MGP_PahariEiJ_G0016064)	Drosha (MGP_PahariEiJ_G0016063)	6030458C11Rik (MGP_PahariEiJ_G0016062)	Pdzd2 (MGP_PahariEiJ_G0016061)
Rat	MODERN SPECIES	11	Tas2r119 (ENSRNOG00000011963)	Atpsckmt (ENSRNOG00000022347)	Cct5 (ENSRNOG00000011632) #7	Cmbl (ENSRNOG00000011260) #8	Marchf6 (ENSRNOG00000011066) #9	Ropn1l (ENSRNOG00000042781) #10	Ankrd33b (ENSRNOG00000010888) #11	Dap (ENSRNOG00000010747)	Ctnnd2 (ENSRNOG00000010649) #13	Dnah5 (ENSRNOG00000048363) #14	Trio (ENSRNOG00000012148) #15	Otulinl (ENSRNOG00000012109) #16	AABR07008940.1 (ENSRNOG00000011997)	Otulin (ENSRNOG00000012017) #18	Ankh (ENSRNOG00000010960) #20	Fbxl7 (ENSRNOG00000024433) #22	Marchf11 (ENSRNOG00000024461) #23	AABR07008911.1 (ENSRNOG00000056969)	Zfp622 (ENSRNOG00000010589) #24	Myo10 (ENSRNOG00000010161) #26	Cwc15-ps3 (ENSRNOG00000025157)	Basp1 (ENSRNOG00000066065) #27	Cdh18 (ENSRNOG00000010535)	ENSRNOG00000068483	AABR07008724.1 (ENSRNOG00000019037)	Cdh12 (ENSRNOG00000026392)	ENSRNOG00000068443	ENSRNOG00000066871	Cdh10 (ENSRNOG00000009771)	Cdh9 (ENSRNOG00000033837)	AABR07008608.1 (ENSRNOG00000055439)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1778									Dnah5 (ENSNGAG00000000799) #14	Trio (ENSNGAG00000022178) #15	ENSNGAG00000007346	Otulinl (ENSNGAG00000022804) #16	Otulin (ENSNGAG00000021789) #18	Ank (ENSNGAG00000021196) #20	ENSNGAG00000020279	Fbxl7 (ENSNGAG00000018840) #22	Marchf11 (ENSNGAG00000016639) #23	Zfp622 (ENSNGAG00000012958) #24	Retreg1 (ENSNGAG00000011943) #25	Myo10 (ENSNGAG00000013287) #26	ENSNGAG00000004229	Basp1 (ENSNGAG00000001116) #27	Cdh18 (ENSNGAG00000022603)
Lesser Egyptian jerboa	MODERN SPECIES	48	Dctn4 (ENSJJAG00000021369)	Smim3 (ENSJJAG00000011996)	Fam170a (ENSJJAG00000003910)	ENSJJAG00000016100	ENSJJAG00000006199	Prr16 (ENSJJAG00000016970)	Ankrd33b (ENSJJAG00000016371) #11	Dap (ENSJJAG00000022373)	ENSJJAG00000014543	Ctnnd2 (ENSJJAG00000015243) #13	Dnah5 (ENSJJAG00000021504) #14	Trio (ENSJJAG00000019719) #15	Otulinl (ENSJJAG00000019612) #16	Otulin (ENSJJAG00000021711) #18	Ank (ENSJJAG00000010626) #20	Fbxl7 (ENSJJAG00000013915) #22	ENSJJAG00000019583	Zfp622 (ENSJJAG00000000941) #24	Retreg1 (ENSJJAG00000007779) #25	Myo10 (ENSJJAG00000013696) #26	Cdh18 (ENSJJAG00000018092)	Cdh12 (ENSJJAG00000018602)	ENSJJAG00000014963	ENSJJAG00000014686	ENSJJAG00000011202	Cdh10 (ENSJJAG00000013847)	ENSJJAG00000020446	Cdh9 (ENSJJAG00000006219)	Cdh6 (ENSJJAG00000022038)	Drosha (ENSJJAG00000019758)	6030458C11Rik (ENSJJAG00000010209)
Laurasiatheria	ANCESTRAL SPECIES	8	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000158009 #22
Common shrew	MODERN SPECIES	5907																FBXL7 (ENSSARG00000010652) #22
Laurasiatheria_a	ANCESTRAL SPECIES	9	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749
Artiodactyla	ANCESTRAL SPECIES	8	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00390000007153.a.a	ENSGT00910000144505
Suina	ANCESTRAL SPECIES	25							ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT01070000254103	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00390000007153.a.a
Pig	MODERN SPECIES	7							ROPN1L (ENSSSCG00000022306) #10	ANKRD33B (ENSSSCG00000039609) #11	DAP (ENSSSCG00000032942)	CTNND2 (ENSSSCG00000016780) #13	DNAH5 (ENSSSCG00000032827) #14	TRIO (ENSSSCG00000016781) #15	OTULINL (ENSSSCG00000016782) #16	OTULIN (ENSSSCG00000034714) #18	ANKH (ENSSSCG00000016784) #20	FBXL7 (ENSSSCG00000028239) #22	ENSSSCG00000016789	MARCHF11 (ENSSSCG00000031525) #23	ENSSSCG00000016791	ZNF622 (ENSSSCG00000016793) #24	RETREG1 (ENSSSCG00000016792) #25	MYO10 (ENSSSCG00000016794) #26	ENSSSCG00000039222 #27	ENSSSCG00000016796	ENSSSCG00000043590	CDH18 (ENSSSCG00000026842)	ENSSSCG00000050005	CDH12 (ENSSSCG00000016799)	ENSSSCG00000016800	ENSSSCG00000058752	CDH10 (ENSSSCG00000016802)
Chacoan peccary	MODERN SPECIES	7	RPL37 (ENSCWAG00000003508)	CARD6 (ENSCWAG00000003528)	C7 (ENSCWAG00000003542)	MROH2B (ENSCWAG00000003569)	C6 (ENSCWAG00000003638)	PLCXD3 (ENSCWAG00000003655)	OXCT1 (ENSCWAG00000003672)	RIMOC1 (ENSCWAG00000003741)	FBXO4 (ENSCWAG00000003760)	GHR (ENSCWAG00000003810)	CCDC152 (ENSCWAG00000003977)	ENSCWAG00000004029	ENSCWAG00000004045	OTULIN (ENSCWAG00000004072) #18	ANKH (ENSCWAG00000004145) #20	FBXL7 (ENSCWAG00000004214) #22	MARCHF11 (ENSCWAG00000004269) #23	ZNF622 (ENSCWAG00000004360) #24	C5orf47 (ENSCWAG00000004398)	NSG2 (ENSCWAG00000004426)	MSX2 (ENSCWAG00000004450)	SLC36A2 (ENSCWAG00000004482)	SLC36A3 (ENSCWAG00000004581)	GM2A (ENSCWAG00000004632)	CCDC69 (ENSCWAG00000004656)	ANXA6 (ENSCWAG00000004732)	TNIP1 (ENSCWAG00000004930)	GPX3 (ENSCWAG00000004993)	MARCHF6 (ENSCWAG00000005026) #9	CMBL (ENSCWAG00000005191) #8	CCT5 (ENSCWAG00000005226) #7
Artiodactyla_a	ANCESTRAL SPECIES	7	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000013228.e.b #28	ENSGT00730000111450.h #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Artiodactyla_b	ANCESTRAL SPECIES	8	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00730000111450.h #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Cetacea	ANCESTRAL SPECIES	1	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00950000183198.c.b.a.t.a	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.h #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00390000003781.e.b.o	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Odontoceti	ANCESTRAL SPECIES	1	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00950000183198.c.b.a.t.a	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.h #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505
Odontoceti_a	ANCESTRAL SPECIES	1	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.h #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749
Odontoceti_b	ANCESTRAL SPECIES	1	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.h #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00980000202649	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000153299.d.q.b	ENSGT00940000154673.a	ENSGT00730000111052
Monodontidae	ANCESTRAL SPECIES	7	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00530000063929.a.a.e.b	ENSGT00390000018829.g.b.d	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.h #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00980000202649	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00490000043329.a.a.a.ob.a	ENSGT00940000153299.d.q.b	ENSGT00940000154673.a
Beluga whale	MODERN SPECIES	16	ANKRD33B (ENSDLEG00000001095) #11	DAP (ENSDLEG00000001108)	ENSDLEG00000001124	CTNND2 (ENSDLEG00000001157) #13	ENSDLEG00000001313	ENSDLEG00000001324	ENSDLEG00000001339	DNAH5 (ENSDLEG00000001370) #14	ENSDLEG00000001564	TRIO (ENSDLEG00000001825) #15	FAM105A (ENSDLEG00000002824) #16	OTULIN (ENSDLEG00000002839) #18	ANKH (ENSDLEG00000002865) #20	ENSDLEG00000002893	ENSDLEG00000002904	FBXL7 (ENSDLEG00000002908) #22	MARCHF11 (ENSDLEG00000002915) #23	ENSDLEG00000002924	ZNF622 (ENSDLEG00000002935) #24	RETREG1 (ENSDLEG00000002953) #25	MYO10 (ENSDLEG00000002973) #26	ENSDLEG00000003030 #27	ENSDLEG00000003035 #28	ENSDLEG00000003046	ENSDLEG00000003056	CDH18 (ENSDLEG00000003072)	CDH12 (ENSDLEG00000003093)	ENSDLEG00000003145	CDH10 (ENSDLEG00000003157)	CDH9 (ENSDLEG00000003174)	ENSDLEG00000003206
Narwhal	MODERN SPECIES	298	ATPSCKMT (ENSMMNG00015005677)	CCT5 (ENSMMNG00015005728) #7	CMBL (ENSMMNG00015005779) #8	MARCHF6 (ENSMMNG00015005820) #9	ROPN1L (ENSMMNG00015005909) #10	ANKRD33B (ENSMMNG00015005921) #11	DAP (ENSMMNG00015005933)	CTNND2 (ENSMMNG00015005980) #13	ENSMMNG00015006124	ENSMMNG00015006148	DNAH5 (ENSMMNG00015006185) #14	TRIO (ENSMMNG00015006412) #15	OTULINL (ENSMMNG00015006675) #16	OTULIN (ENSMMNG00015006695) #18	ANKH (ENSMMNG00015006722) #20	FBXL7 (ENSMMNG00015006745) #22	MARCHF11 (ENSMMNG00015006768) #23	ENSMMNG00015006789	ZNF622 (ENSMMNG00015006807) #24	RETREG1 (ENSMMNG00015006854) #25	MYO10 (ENSMMNG00015006986) #26	BASP1 (ENSMMNG00015007172) #27	ENSMMNG00015007183 #28	ENSMMNG00015007196	ENSMMNG00015007206	CDH18 (ENSMMNG00015007252)	CDH12 (ENSMMNG00015007326)	ENSMMNG00015007381	CDH10 (ENSMMNG00015007404)	CDH9 (ENSMMNG00015007453)	ENSMMNG00015007479
Vaquita	MODERN SPECIES	14	ENSPSNG00000001545	SEMA5A (ENSPSNG00000001504)	ATPSCKMT (ENSPSNG00000001462)	CCT5 (ENSPSNG00000001419) #7	CMBL (ENSPSNG00000001379) #8	MARCHF6 (ENSPSNG00000001274) #9	ROPN1L (ENSPSNG00000001126) #10	ANKRD33B (ENSPSNG00000001044) #11	ENSPSNG00000001006	CTNND2 (ENSPSNG00000000871) #13	DNAH5 (ENSPSNG00000000658) #14	TRIO (ENSPSNG00000000361) #15	OTULINL (ENSPSNG00000000205) #16	OTULIN (ENSPSNG00000000165) #18	ANKH (ENSPSNG00000000115) #20	FBXL7 (ENSPSNG00000008848) #22	MARCHF11 (ENSPSNG00000008797) #23	ENSPSNG00000008763	ZNF622 (ENSPSNG00000008731) #24	RETREG1 (ENSPSNG00000008600) #25	MYO10 (ENSPSNG00000008517) #26	BASP1 (ENSPSNG00000008407) #27	ENSPSNG00000008390 #28	ENSPSNG00000008306	CDH18 (ENSPSNG00000008241)	CDH12 (ENSPSNG00000008078)	ENSPSNG00000008037	CDH10 (ENSPSNG00000007961)	CDH9 (ENSPSNG00000007920)	ENSPSNG00000007896	ENSPSNG00000007873
Dolphin	MODERN SPECIES	2300																FBXL7 (ENSTTRG00000004125) #22	MARCHF11 (ENSTTRG00000004150) #23
Sperm whale	MODERN SPECIES	19	ENSPCTG00005002747	ROPN1L (ENSPCTG00005002753) #10	ANKRD33B (ENSPCTG00005002770) #11	DAP (ENSPCTG00005002789)	CTNND2 (ENSPCTG00005002822) #13	ENSPCTG00005002965	ENSPCTG00005002979	ENSPCTG00005002988	DNAH5 (ENSPCTG00005003015) #14	TRIO (ENSPCTG00005003109) #15	OTULINL (ENSPCTG00005003212) #16	OTULIN (ENSPCTG00005003221) #18	ENSPCTG00005003233	ANKH (ENSPCTG00005003239) #20	ENSPCTG00005003250	FBXL7 (ENSPCTG00005003269) #22	MARCH11 (ENSPCTG00005003284) #23	ENSPCTG00005003297	ENSPCTG00005003299	ENSPCTG00005003316 #24	RETREG1 (ENSPCTG00005003333) #25	ENSPCTG00005003348 #24	MYO10 (ENSPCTG00005003379) #26	BASP1 (ENSPCTG00005003406) #27	ENSPCTG00005003411 #28	ENSPCTG00005003416	CDH18 (ENSPCTG00005003431)	ENSPCTG00005003442	CDH12 (ENSPCTG00005003472)	ENSPCTG00005003531	CDH10 (ENSPCTG00005003543)
Blue whale	MODERN SPECIES	14	MARCHF6 (ENSBMSG00010015821) #9	ENSBMSG00010016023	ROPN1L (ENSBMSG00010016036) #10	ANKRD33B (ENSBMSG00010016062) #11	DAP (ENSBMSG00010016082)	CTNND2 (ENSBMSG00010016138) #13	ENSBMSG00010016472	ENSBMSG00010016498	ENSBMSG00010016511	DNAH5 (ENSBMSG00010016560) #14	TRIO (ENSBMSG00010016884) #15	OTULINL (ENSBMSG00010017214) #16	ENSBMSG00010017247 #18	ENSBMSG00010017287	ANKH (ENSBMSG00010017320) #20	FBXL7 (ENSBMSG00010017389) #22	MARCHF11 (ENSBMSG00010017427) #23	ENSBMSG00010017457	ENSBMSG00010017471	ZNF622 (ENSBMSG00010017487) #24	RETREG1 (ENSBMSG00010017525) #25	ENSBMSG00010017567	ENSBMSG00010017604 #26	ENSBMSG00010017662	BASP1 (ENSBMSG00010017687) #27	ENSBMSG00010017699 #28	ENSBMSG00010017713	ENSBMSG00010017731	CDH18 (ENSBMSG00010017770)	CDH12 (ENSBMSG00010017903)	ENSBMSG00010017996
Pecora	ANCESTRAL SPECIES	25	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT01070000254103	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00390000009405.b.p.b.a.b.a.b.a.a.a	ENSGT00940000154673.a	ENSGT00730000111052
Percora_a	ANCESTRAL SPECIES	26	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT01070000254103	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Bovidae	ANCESTRAL SPECIES	26	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000008610.a.b.a.a.a	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000154598.ac.a	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT01070000254103	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a
Caprinae	ANCESTRAL SPECIES	24	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00940000159547.d	ENSGT00940000154598.ac.a	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00390000011864.e	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Rambouillet Sheep	MODERN SPECIES	7	SEMA5A (ENSOARG00020022080)	ENSOARG00020022027	ATPSCKMT (ENSOARG00020021986)	CCT5 (ENSOARG00020021843) #7	CMBL (ENSOARG00020021802) #8	MARCHF6 (ENSOARG00020020993) #9	DAP (ENSOARG00020020846)	ENSOARG00020020806	CTNND2 (ENSOARG00020019950) #13	ENSOARG00020019873	DNAH5 (ENSOARG00020019327) #14	TRIO (ENSOARG00020015605) #15	OTULINL (ENSOARG00020015405) #16	OTULIN (ENSOARG00020015362) #18	ANKH (ENSOARG00020015114) #20	FBXL7 (ENSOARG00020014968) #22	MARCHF11 (ENSOARG00020014889) #23	ZNF622 (ENSOARG00020014823) #24	RETREG1 (ENSOARG00020014626) #25	MYO10 (ENSOARG00020013822) #26	ENSOARG00020013742 #27	ENSOARG00020013700	ENSOARG00020013658 #28	ENSOARG00020013600	CDH18 (ENSOARG00020013503)	ENSOARG00020013447	ENSOARG00020013424	CDH12 (ENSOARG00020013109)	ENSOARG00020013037	CDH10 (ENSOARG00020012850)	CDH9 (ENSOARG00020012679)
Goat	MODERN SPECIES	12	ENSCHIG00000019011	ATPSCKMT (ENSCHIG00000018299)	CCT5 (ENSCHIG00000018198) #7	CMBL (ENSCHIG00000023506) #8	MARCHF6 (ENSCHIG00000017175) #9	ROPN1L (ENSCHIG00000024633) #10	ANKRD33B (ENSCHIG00000021552) #11	DAP (ENSCHIG00000018806)	CTNND2 (ENSCHIG00000013482) #13	DNAH5 (ENSCHIG00000021054) #14	ENSCHIG00000016462	TRIO (ENSCHIG00000016556) #15	OTULINL (ENSCHIG00000000624) #16	OTULIN (ENSCHIG00000021689) #18	ANKH (ENSCHIG00000019071) #20	FBXL7 (ENSCHIG00000011704) #22	MARCHF11 (ENSCHIG00000018244) #23	ZNF622 (ENSCHIG00000007951) #24	RETREG1 (ENSCHIG00000021819) #25	MYO10 (ENSCHIG00000023439) #26	ENSCHIG00000010404	BASP1 (ENSCHIG00000006852) #27	ENSCHIG00000012577	ENSCHIG00000000477	ENSCHIG00000019812	CDH18 (ENSCHIG00000020499)	ENSCHIG00000010974	ENSCHIG00000024979	ENSCHIG00000017981	CDH12 (ENSCHIG00000014575)	ENSCHIG00000009895
Bovinae	ANCESTRAL SPECIES	25	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000013228.e.b #28	ENSGT00940000159547.d	ENSGT00940000154598.ac.a	ENSGT00940000157512	ENSGT00940000154509.y.b.b	ENSGT00940000154187.a.b	ENSGT01070000254103	ENSGT00910000147942.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b
Bos	ANCESTRAL SPECIES	26	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000013228.e.b.a #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154509.y.b.b	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Bos_a	ANCESTRAL SPECIES	38	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000013228.e.b.a #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154509.y.b.b	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Wild yak	MODERN SPECIES	1013																FBXL7 (ENSBMUG00000007973) #22	ZNF622 (ENSBMUG00000007953) #24	RETREG1 (ENSBMUG00000007900) #25	MYO10 (ENSBMUG00000007845) #26	BASP1 (ENSBMUG00000007799) #27	ENSBMUG00000007791
Domestic yak	MODERN SPECIES	15	ENSBGRG00000012367	ATPSCKMT (ENSBGRG00000012505)	CCT5 (ENSBGRG00000012720) #7	CMBL (ENSBGRG00000013187) #8	MARCHF6 (ENSBGRG00000013423) #9	ANKRD33B (ENSBGRG00000016682) #11	ENSBGRG00000016754	CTNND2 (ENSBGRG00000016883) #13	ENSBGRG00000017939	DNAH5 (ENSBGRG00000018062) #14	ENSBGRG00000018948 #15	ENSBGRG00000019222 #15	OTULINL (ENSBGRG00000019549) #16	OTULIN (ENSBGRG00000019637) #18	ANKH (ENSBGRG00000019829) #20	FBXL7 (ENSBGRG00000020043) #22	MARCHF11 (ENSBGRG00000020077) #23	ZNF622 (ENSBGRG00000020128) #24	FAM134B (ENSBGRG00000020222) #25	MYO10 (ENSBGRG00000020569) #26	ENSBGRG00000021114 #27	ENSBGRG00000021130 #28	ENSBGRG00000021278	CDH18 (ENSBGRG00000006988)	ENSBGRG00000007130	CDH12 (ENSBGRG00000007165)	CDH10 (ENSBGRG00000007320)	CDH9 (ENSBGRG00000007438)	ENSBGRG00000007593	ENSBGRG00000007608	ENSBGRG00000007634
Bos_b	ANCESTRAL SPECIES	29	ENSGT01100000263481.n.a.a.a.a.a.a.b.b.a.a.b.b	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.g.b #27	ENSGT00390000013228.e.b.a #28	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154509.y.b.b	ENSGT00940000154187.a.b	ENSGT00940000160407.f	ENSGT01070000254103	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a
Hybrid Bos Indicus	MODERN SPECIES	12	CCT5 (ENSBIXG00005005013) #7	ENSBIXG00005005028 #8	MARCHF6 (ENSBIXG00005005112) #9	ROPN1L (ENSBIXG00005002000) #10	ANKRD33B (ENSBIXG00005001972) #11	ENSBIXG00005005156	CTNND2 (ENSBIXG00005005195) #13	DNAH5 (ENSBIXG00005030493) #14	ENSBIXG00005030473	ENSBIXG00005030459 #15	ENSBIXG00005030443 #15	OTULINL (ENSBIXG00005030429) #16	OTULIN (ENSBIXG00005030412) #18	ANKH (ENSBIXG00005030407) #20	ENSBIXG00005030392	FBXL7 (ENSBIXG00005030372) #22	MARCHF11 (ENSBIXG00005030353) #23	ZNF622 (ENSBIXG00005030343) #24	RETREG1 (ENSBIXG00005030325) #25	MYO10 (ENSBIXG00005030308) #26	ENSBIXG00005030286 #27	ENSBIXG00005030265 #28	ENSBIXG00005030260 #28	ENSBIXG00005030258 #28	ENSBIXG00005030254 #28	ENSBIXG00005030250 #28	ENSBIXG00005030243 #28	ENSBIXG00005030240 #28	ENSBIXG00005030233	CDH18 (ENSBIXG00005030166)	ENSBIXG00005030123
Cow	MODERN SPECIES	12	CCT5 (ENSBTAG00000017889) #7	CMBL (ENSBTAG00000010801) #8	MARCHF6 (ENSBTAG00000003536) #9	ROPN1L (ENSBTAG00000003539) #10	ANKRD33B (ENSBTAG00000011337) #11	DAP (ENSBTAG00000006346)	CTNND2 (ENSBTAG00000017222) #13	ENSBTAG00000049263	ENSBTAG00000053006	DNAH5 (ENSBTAG00000021972) #14	ENSBTAG00000054860	TRIO (ENSBTAG00000005514) #15	OTULINL (ENSBTAG00000000672) #16	OTULIN (ENSBTAG00000003186) #18	ANKH (ENSBTAG00000013391) #20	FBXL7 (ENSBTAG00000003219) #22	MARCHF11 (ENSBTAG00000037576) #23	ZNF622 (ENSBTAG00000016441) #24	RETREG1 (ENSBTAG00000016444) #25	MYO10 (ENSBTAG00000020126) #26	BASP1 (ENSBTAG00000048565) #27	ENSBTAG00000053528	ENSBTAG00000049518 #28	ENSBTAG00000055246 #28	ENSBTAG00000053920 #28	ENSBTAG00000048368 #28	ENSBTAG00000049086 #28	ENSBTAG00000051411 #28	ENSBTAG00000054794 #28	ENSBTAG00000049990 #28	ENSBTAG00000012971
American bison	MODERN SPECIES	3308											DNAH5 (ENSBBBG00000020759) #14	TRIO (ENSBBBG00000005564) #15	OTULINL (ENSBBBG00000020414) #16	OTULIN (ENSBBBG00000005517) #18	ANKH (ENSBBBG00000020391) #20	FBXL7 (ENSBBBG00000020366) #22	MARCHF11 (ENSBBBG00000005507) #23	ZNF622 (ENSBBBG00000020347) #24	RETREG1 (ENSBBBG00000020337) #25	MYO10 (ENSBBBG00000007383) #26	ENSBBBG00000020182 #28
Siberian musk deer	MODERN SPECIES	1233	CCT5 (ENSMMSG00000021573) #7	CMBL (ENSMMSG00000021656) #8	MARCHF6 (ENSMMSG00000021699) #9	ROPN1L (ENSMMSG00000021911) #10	ANKRD33B (ENSMMSG00000021936) #11	DAP (ENSMMSG00000021965)	ENSMMSG00000021978	CTNND2 (ENSMMSG00000022008) #13	DNAH5 (ENSMMSG00000022273) #14	ENSMMSG00000022427	ENSMMSG00000022496	ENSMMSG00000022506 #15	OTULINL (ENSMMSG00000022534) #16	OTULIN (ENSMMSG00000022546) #18	ANKH (ENSMMSG00000022568) #20	FBXL7 (ENSMMSG00000022595) #22	MARCHF11 (ENSMMSG00000022610) #23	ZNF622 (ENSMMSG00000022625) #24	RETREG1 (ENSMMSG00000022645) #25	MYO10 (ENSMMSG00000022680) #26	BASP1 (ENSMMSG00000022727) #27	ENSMMSG00000022732 #28	ENSMMSG00000022739	ENSMMSG00000022750	CDH18 (ENSMMSG00000022767)
Yarkand deer	MODERN SPECIES	17	MARCHF6 (ENSCHYG00000015092) #9	ANKRD33B (ENSCHYG00000014906) #11	DAP (ENSCHYG00000014843)	ENSCHYG00000014792	ENSCHYG00000014724	CTNND2 (ENSCHYG00000014547) #13	DNAH5 (ENSCHYG00000013613) #14	ENSCHYG00000013334 #15	ENSCHYG00000013264	ENSCHYG00000012999 #15	OTULINL (ENSCHYG00000012915) #16	ENSCHYG00000012895	OTULIN (ENSCHYG00000012858) #18	ANKH (ENSCHYG00000012797) #20	ENSCHYG00000012770	FBXL7 (ENSCHYG00000012633) #22	MARCHF11 (ENSCHYG00000012594) #23	ZNF622 (ENSCHYG00000012501) #24	RETREG1 (ENSCHYG00000012421) #25	MYO10 (ENSCHYG00000010240) #26	ENSCHYG00000010107 #27	ENSCHYG00000010075 #28	ENSCHYG00000010026	ENSCHYG00000010009	CDH18 (ENSCHYG00000009881)	CDH12 (ENSCHYG00000009733)	ENSCHYG00000026639	CDH10 (ENSCHYG00000026619)	ENSCHYG00000026612	ENSCHYG00000026607	CDH9 (ENSCHYG00000026605)
Camelidae	ANCESTRAL SPECIES	1	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047.m.a #24	ENSGT00390000018047.m.b #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.h #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749
Arabian camel	MODERN SPECIES	22	CCT5 (ENSCDRG00005003627) #7	CMBL (ENSCDRG00005003573) #8	MARCHF6 (ENSCDRG00005003229) #9	ROPN1L (ENSCDRG00005003147) #10	ANKRD33B (ENSCDRG00005003131) #11	DAP (ENSCDRG00005003120)	CTNND2 (ENSCDRG00005003082) #13	DNAH5 (ENSCDRG00005002951) #14	ENSCDRG00005002883 #15	ENSCDRG00005002834	ENSCDRG00005002774 #15	OTULINL (ENSCDRG00005002746) #16	OTULIN (ENSCDRG00005002724) #18	ENSCDRG00005002709	ANKH (ENSCDRG00005002678) #20	FBXL7 (ENSCDRG00005002650) #22	MARCHF11 (ENSCDRG00005002629) #23	ENSCDRG00005002615 #24	ENSCDRG00005002600 #24	RETREG1 (ENSCDRG00005002579) #25	MYO10 (ENSCDRG00005002542) #26	ENSCDRG00005002517 #27	ENSCDRG00005002502	CDH18 (ENSCDRG00005002478)	ENSCDRG00005002470	CDH12 (ENSCDRG00005002445)	CDH10 (ENSCDRG00005002409)	CDH9 (ENSCDRG00005002390)	ENSCDRG00005002378	ENSCDRG00005002367	CDH6 (ENSCDRG00005002349)
Alpaca	MODERN SPECIES	2366																FBXL7 (ENSVPAG00000009772) #22	MARCHF11 (ENSVPAG00000009773) #23
Laurasiatheria_b	ANCESTRAL SPECIES	9	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749
Laurasiatheria_c	ANCESTRAL SPECIES	7	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749
Chiroptera	ANCESTRAL SPECIES	1	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749
Megabat	MODERN SPECIES	2715																FBXL7 (ENSPVAG00000001916) #22
Microchiroptera	ANCESTRAL SPECIES	3	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749
Greater horseshoe bat	MODERN SPECIES	25	ATPSCKMT (ENSRFEG00010003174)	CCT5 (ENSRFEG00010003237) #7	CMBL (ENSRFEG00010003311) #8	MARCHF6 (ENSRFEG00010003360) #9	ROPN1L (ENSRFEG00010003413) #10	ANKRD33B (ENSRFEG00010003433) #11	DAP (ENSRFEG00010003456)	CTNND2 (ENSRFEG00010003516) #13	DNAH5 (ENSRFEG00010003650) #14	TRIO (ENSRFEG00010003793) #15	OTULINL (ENSRFEG00010003944) #16	ENSRFEG00010003959	OTULIN (ENSRFEG00010003972) #18	ANKH (ENSRFEG00010003994) #20	ENSRFEG00010004021	FBXL7 (ENSRFEG00010004038) #22	MARCHF11 (ENSRFEG00010004055) #23	ZNF622 (ENSRFEG00010004066) #24	RETREG1 (ENSRFEG00010004080) #25	ENSRFEG00010004116	MYO10 (ENSRFEG00010004145) #26	ENSRFEG00010004228	BASP1 (ENSRFEG00010004237) #27	CDH18 (ENSRFEG00010004292)	CDH12 (ENSRFEG00010004340)	ENSRFEG00010004378	CDH10 (ENSRFEG00010004391)	CDH9 (ENSRFEG00010004408)	CDH6 (ENSRFEG00010004434)	DROSHA (ENSRFEG00010004507)	C5orf22 (ENSRFEG00010004597)
Microbat	MODERN SPECIES	937										CTNND2 (ENSMLUG00000000833) #13	DNAH5 (ENSMLUG00000003652) #14	TRIO (ENSMLUG00000000763) #15	OTULINL (ENSMLUG00000000804) #16	OTULIN (ENSMLUG00000000810) #18	ANKH (ENSMLUG00000005172) #20	FBXL7 (ENSMLUG00000007857) #22	MYADM (ENSMLUG00000015492)	ZNF622 (ENSMLUG00000007088) #24	MARCHF11 (ENSMLUG00000003673) #23	RETREG1 (ENSMLUG00000007101) #25	MYO10 (ENSMLUG00000009101) #26	ENSMLUG00000024599	BASP1 (ENSMLUG00000023928) #27	ENSMLUG00000027425 #28	CDH18 (ENSMLUG00000007826)	ENSMLUG00000006406	CDH10 (ENSMLUG00000013350)	CDH9 (ENSMLUG00000013831)	ENSMLUG00000013374	ENSMLUG00000026909	CDH6 (ENSMLUG00000002574)
Equus	ANCESTRAL SPECIES	23	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00390000013228.e.b #28	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749
Donkey	MODERN SPECIES	1	SEMA5A (ENSEASG00005018591)	TAS2R1 (ENSEASG00005018593)	ATPSCKMT (ENSEASG00005018594)	CCT5 (ENSEASG00005018595) #7	CMBL (ENSEASG00005018596) #8	MARCHF6 (ENSEASG00005018598) #9	ROPN1L (ENSEASG00005018599) #10	ANKRD33B (ENSEASG00005033374) #11	DAP (ENSEASG00005037402)	CTNND2 (ENSEASG00005018602) #13	DNAH5 (ENSEASG00005018225) #14	TRIO (ENSEASG00005017933) #15	OTULINL (ENSEASG00005017778) #16	OTULIN (ENSEASG00005017769) #18	ANKH (ENSEASG00005017738) #20	FBXL7 (ENSEASG00005038620) #22	MARCHF11 (ENSEASG00005038351) #23	ENSEASG00005033563	ZNF622 (ENSEASG00005007253) #24	RETREG1 (ENSEASG00005029345) #25	MYO10 (ENSEASG00005007206) #26	BASP1 (ENSEASG00005026829) #27	ENSEASG00005007184 #28	CDH18 (ENSEASG00005007180)	CDH12 (ENSEASG00005007168)	CDH10 (ENSEASG00005007161)	CDH9 (ENSEASG00005007157)	ENSEASG00005023693	CDH6 (ENSEASG00005007155)	ENSEASG00005035698	DROSHA (ENSEASG00005007149)
Horse	MODERN SPECIES	13	CMBL (ENSECAG00000015898) #8	MARCHF6 (ENSECAG00000012069) #9	ENSECAG00000047348	ROPN1L (ENSECAG00000011750) #10	ANKRD33B (ENSECAG00000033821) #11	DAP (ENSECAG00000031921)	ENSECAG00000043848	CTNND2 (ENSECAG00000010901) #13	ENSECAG00000048274	DNAH5 (ENSECAG00000014954) #14	TRIO (ENSECAG00000019952) #15	OTULINL (ENSECAG00000017059) #16	ENSECAG00000057645	OTULIN (ENSECAG00000016599) #18	ANKH (ENSECAG00000006338) #20	FBXL7 (ENSECAG00000005529) #22	MARCHF11 (ENSECAG00000024858) #23	ZNF622 (ENSECAG00000020350) #24	RETREG1 (ENSECAG00000016899) #25	MYO10 (ENSECAG00000007941) #26	BASP1 (ENSECAG00000040740) #27	ENSECAG00000005030 #28	CDH18 (ENSECAG00000019320)	CDH12 (ENSECAG00000014223)	CDH10 (ENSECAG00000004842)	CDH9 (ENSECAG00000016167)	ENSECAG00000014131	ENSECAG00000035420	CDH6 (ENSECAG00000016111)	DROSHA (ENSECAG00000013578)	C21H5orf22 (ENSECAG00000011712)
Carnivora	ANCESTRAL SPECIES	8	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749
Felidae	ANCESTRAL SPECIES	6	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.q #15	ENSGT00940000166969.b	ENSGT00940000154766.a.a.r #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00960000192784	ENSGT00990000211033	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Panthera	ANCESTRAL SPECIES	6	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.q #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00960000192784	ENSGT00990000211033	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
Panthera_a	ANCESTRAL SPECIES	3	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.r #15	ENSGT00940000166969.b	ENSGT00940000154766.a.a.q #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00960000192784	ENSGT00990000211033	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801
leopard	MODERN SPECIES	19	TAS2R1 (ENSPPRG00000014981)	ATPSCKMT (ENSPPRG00000005698)	CCT5 (ENSPPRG00000006386) #7	CMBL (ENSPPRG00000006791) #8	MARCHF6 (ENSPPRG00000012698) #9	ROPN1L (ENSPPRG00000013036) #10	ANKRD33B (ENSPPRG00000013078) #11	DAP (ENSPPRG00000013275)	CTNND2 (ENSPPRG00000000905) #13	DNAH5 (ENSPPRG00000003569) #14	ENSPPRG00000005068 #15	ENSPPRG00000005790	OTULINL (ENSPPRG00000006096) #16	OTULIN (ENSPPRG00000007038) #18	ANKH (ENSPPRG00000007398) #20	FBXL7 (ENSPPRG00000008025) #22	MARCHF11 (ENSPPRG00000008162) #23	ENSPPRG00000008274 #24	ENSPPRG00000008393 #24	RETREG1 (ENSPPRG00000008874) #25	MYO10 (ENSPPRG00000012166) #26	BASP1 (ENSPPRG00000016134) #27	ENSPPRG00000012741	ENSPPRG00000012964	CDH18 (ENSPPRG00000015628)	CDH12 (ENSPPRG00000018034)	CDH10 (ENSPPRG00000020168)	ENSPPRG00000000864	ENSPPRG00000001400	CDH9 (ENSPPRG00000001687)	ENSPPRG00000016322
lion	MODERN SPECIES		TAS2R1 (ENSPLOG00000010440)	ENSPLOG00000010455	ATPSCKMT (ENSPLOG00000010468)	CCT5 (ENSPLOG00000010569) #7	CMBL (ENSPLOG00000010689) #8	MARCHF6 (ENSPLOG00000010780) #9	ROPN1L (ENSPLOG00000011281) #10	ANKRD33B (ENSPLOG00000011323) #11	ENSPLOG00000011345	CTNND2 (ENSPLOG00000011401) #13	DNAH5 (ENSPLOG00000011942) #14	TRIO (ENSPLOG00000012691) #15	OTULINL (ENSPLOG00000013236) #16	OTULIN (ENSPLOG00000013270) #18	ANKH (ENSPLOG00000013310) #20	FBXL7 (ENSPLOG00000013347) #22	MARCHF11 (ENSPLOG00000013400) #23	ZNF622 (ENSPLOG00000013434) #24	RETREG1 (ENSPLOG00000013464) #25	MYO10 (ENSPLOG00000013576) #26	ENSPLOG00000013785 #27	ENSPLOG00000013827	CDH18 (ENSPLOG00000013887)	CDH12 (ENSPLOG00000014183)	CDH10 (ENSPLOG00000014378)	CDH9 (ENSPLOG00000014486)	ENSPLOG00000014589	ENSPLOG00000014612	ENSPLOG00000014663	CDH6 (ENSPLOG00000014725)	DROSHA (ENSPLOG00000014937)
Tiger	MODERN SPECIES	399								DNAH5 (ENSPTIG00000007989) #14	ENSPTIG00000009184 #15	ENSPTIG00000009248 #15	ENSPTIG00000009309	OTULINL (ENSPTIG00000009360) #16	OTULIN (ENSPTIG00000009407) #18	ANKH (ENSPTIG00000009437) #20	ENSPTIG00000008154	FBXL7 (ENSPTIG00000009515) #22	MARCHF11 (ENSPTIG00000009585) #23	ZNF622 (ENSPTIG00000009603) #24	RETREG1 (ENSPTIG00000009754) #25	MYO10 (ENSPTIG00000009835) #26	ENSPTIG00000010201	ENSPTIG00000008162	CDH18 (ENSPTIG00000010486)
Cat	MODERN SPECIES		ATPSCKMT (ENSFCAG00000027158)	CCT5 (ENSFCAG00000003129) #7	CMBL (ENSFCAG00000028005) #8	MARCHF6 (ENSFCAG00000003132) #9	ROPN1L (ENSFCAG00000003135) #10	ANKRD33B (ENSFCAG00000009294) #11	ENSFCAG00000034118	CTNND2 (ENSFCAG00000002522) #13	DNAH5 (ENSFCAG00000015341) #14	ENSFCAG00000046989 #15	ENSFCAG00000043724	ENSFCAG00000052934 #15	OTULINL (ENSFCAG00000026260) #16	OTULIN (ENSFCAG00000006066) #18	ANKH (ENSFCAG00000012251) #20	FBXL7 (ENSFCAG00000030930) #22	MARCHF11 (ENSFCAG00000005741) #23	ZNF622 (ENSFCAG00000018947) #24	RETREG1 (ENSFCAG00000041849) #25	MYO10 (ENSFCAG00000010325) #26	ENSFCAG00000042777 #27	CDH18 (ENSFCAG00000013641)	CDH12 (ENSFCAG00000007961)	CDH10 (ENSFCAG00000027287)	CDH9 (ENSFCAG00000029402)	ENSFCAG00000045725	ENSFCAG00000048491	ENSFCAG00000050728	CDH6 (ENSFCAG00000000359)	DROSHA (ENSFCAG00000000360)	CA1H5orf22 (ENSFCAG00000039953)
Caniformia	ANCESTRAL SPECIES	5	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a
Caniformia_b	ANCESTRAL SPECIES	4	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c.d	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.j #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a
Mustelinae	ANCESTRAL SPECIES	149	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c.d	ENSGT00940000154952.a.b #13	ENSGT00940000154426.b.b.y.a.b	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.j #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154673.b
Ferret	MODERN SPECIES	239	CCT5 (ENSMPUG00000011256) #7	CMBL (ENSMPUG00000011238) #8	MARCHF6 (ENSMPUG00000011228) #9	ROPN1L (ENSMPUG00000011224) #10	ENSMPUG00000011222	ANKRD33B (ENSMPUG00000011211) #11	CTNND2 (ENSMPUG00000011203) #13	ENSMPUG00000011198 #13	ENSMPUG00000011188	DNAH5 (ENSMPUG00000011161) #14	TRIO (ENSMPUG00000011143) #15	OTULINL (ENSMPUG00000011140) #16	ENSMPUG00000019940	OTULIN (ENSMPUG00000011131) #18	ANKH (ENSMPUG00000011126) #20	FBXL7 (ENSMPUG00000011123) #22	MARCHF11 (ENSMPUG00000011114) #23	ENSMPUG00000011113	ZNF622 (ENSMPUG00000011110) #24	RETREG1 (ENSMPUG00000011093) #25	MYO10 (ENSMPUG00000011073) #26	BASP1 (ENSMPUG00000011070) #27	ENSMPUG00000019939	CDH18 (ENSMPUG00000010948)
American mink	MODERN SPECIES	247																FBXL7 (ENSNVIG00000001338) #22	MARCHF11 (ENSNVIG00000001329) #23	ZNF622 (ENSNVIG00000001307) #24	RETREG1 (ENSNVIG00000001248) #25	MYO10 (ENSNVIG00000001080) #26	BASP1 (ENSNVIG00000001061) #27	ENSNVIG00000001049
Ursidae	ANCESTRAL SPECIES	24	ENSGT00950000183210.d.a.c.a.a.a	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c.d	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.p #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.j #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a.g	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT00390000007153.a.a
Ursus	ANCESTRAL SPECIES	114	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT01090000260283	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.p #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00940000159547.d	ENSGT00940000157512
American black bear	MODERN SPECIES	5334																FBXL7 (ENSUAMG00000021350) #22
Polar bear	MODERN SPECIES	165	CCT5 (ENSUMAG00000022376) #7	CMBL (ENSUMAG00000022374) #8	MARCHF6 (ENSUMAG00000022100) #9	ROPN1L (ENSUMAG00000022032) #10	ENSUMAG00000022025 #11	ENSUMAG00000022022	ENSUMAG00000022008 #13	ENSUMAG00000021996 #13	DNAH5 (ENSUMAG00000021992) #14	TRIO (ENSUMAG00000021795) #15	OTULINL (ENSUMAG00000021747) #16	OTULIN (ENSUMAG00000021740) #18	ENSUMAG00000021737	ANKH (ENSUMAG00000021732) #20	ENSUMAG00000021730	FBXL7 (ENSUMAG00000021723) #22	ZNF622 (ENSUMAG00000021715) #24	RETREG1 (ENSUMAG00000021712) #25	MYO10 (ENSUMAG00000021360) #26	ENSUMAG00000021260	CDH18 (ENSUMAG00000021239)	ENSUMAG00000021225	ENSUMAG00000021221
Giant Panda	MODERN SPECIES	13	ENSAMEG00000003878	ATPSCKMT (ENSAMEG00000003866)	CCT5 (ENSAMEG00000003838) #7	CMBL (ENSAMEG00000003820) #8	MARCHF6 (ENSAMEG00000003768) #9	ROPN1L (ENSAMEG00000003758) #10	ANKRD33B (ENSAMEG00000025303) #11	DAP (ENSAMEG00000028019)	CTNND2 (ENSAMEG00000013097) #13	DNAH5 (ENSAMEG00000009669) #14	ENSAMEG00000009695 #15	OTULINL (ENSAMEG00000009720) #16	ENSAMEG00000025544	OTULIN (ENSAMEG00000009737) #18	ANKH (ENSAMEG00000009745) #20	FBXL7 (ENSAMEG00000009793) #22	MARCHF11 (ENSAMEG00000026687) #23	ZNF622 (ENSAMEG00000015369) #24	RETREG1 (ENSAMEG00000026077) #25	MYO10 (ENSAMEG00000015404) #26	ENSAMEG00000026804 #27	ENSAMEG00000019207	ENSAMEG00000024937	CDH18 (ENSAMEG00000007705)	CDH12 (ENSAMEG00000030530)	CDH10 (ENSAMEG00000010644)	ENSAMEG00000013460	CDH6 (ENSAMEG00000005964)	DROSHA (ENSAMEG00000006000)	C5orf22 (ENSAMEG00000006084)	PDZD2 (ENSAMEG00000006091)
Canidae	ANCESTRAL SPECIES	7															ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00390000007153.a.a.c	ENSGT00910000144505
Canis_lupus	ANCESTRAL SPECIES	12															ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000159547.d	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000172218	ENSGT00390000000707.h	ENSGT00940000154187.a.a	ENSGT00530000063666.b.y.a.a.a.b	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052
Dog	MODERN SPECIES	32														ANKH (ENSCAFG00845003814) #20	ENSCAFG00845003801	FBXL7 (ENSCAFG00845003787) #22	MARCHF11 (ENSCAFG00845003766) #23	RETREG1 (ENSCAFG00845003719) #24	MYO10 (ENSCAFG00845003406) #26	BASP1 (ENSCAFG00845003311) #27	ENSCAFG00845003298	CDH18 (ENSCAFG00845003254)	CDH12 (ENSCAFG00845003180)	ENSCAFG00845003037	ENSCAFG00845003009	CDH10 (ENSCAFG00845002970)	ENSCAFG00845002958	CDH9 (ENSCAFG00845002921)	ENSCAFG00845002893	CDH6 (ENSCAFG00845002783)	DROSHA (ENSCAFG00845002476)
Dingo	MODERN SPECIES	313														ANKH (ENSCAFG00020020171) #20	ENSCAFG00020020169	FBXL7 (ENSCAFG00020020167) #22	MARCHF11 (ENSCAFG00020020163) #23	ZNF622 (ENSCAFG00020020158) #24	RETREG1 (ENSCAFG00020020155) #25	MYO10 (ENSCAFG00020019702) #26	BASP1 (ENSCAFG00020019666) #27	ENSCAFG00020019658	CDH18 (ENSCAFG00020019550)	ENSCAFG00020019544	CDH12 (ENSCAFG00020019537)	ENSCAFG00020019531	ENSCAFG00020019524	CDH10 (ENSCAFG00020019506)	ENSCAFG00020019502	ENSCAFG00020019501	CDH9 (ENSCAFG00020019498)
Atlantogenata	ANCESTRAL SPECIES		ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Xenarthra	ANCESTRAL SPECIES	878																ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27
Armadillo	MODERN SPECIES	1110						ENSDNOG00000045432	ENSDNOG00000040257	NR4A2 (ENSDNOG00000031336)	GPD2 (ENSDNOG00000009348)	GALNT5 (ENSDNOG00000033007)	ERMN (ENSDNOG00000040595)	CYTIP (ENSDNOG00000049227)	ACVR1C (ENSDNOG00000004277)	ENSDNOG00000039978	ENSDNOG00000040727	FBXL7 (ENSDNOG00000049796) #22	ENSDNOG00000031427 #23	ZNF622 (ENSDNOG00000035990) #24	RETREG1 (ENSDNOG00000018975) #25	MYO10 (ENSDNOG00000004469) #26	BASP1 (ENSDNOG00000035443) #27
Afrotheria	ANCESTRAL SPECIES	12								ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00940000160263
Afrotheria_a	ANCESTRAL SPECIES	12								ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a	ENSGT00940000160263
Elephant	MODERN SPECIES	526	ENSLAFG00000011431	SLC6A3 (ENSLAFG00000003040)	CLPTM1L (ENSLAFG00000012245)	TERT (ENSLAFG00000013077)	SLC6A18 (ENSLAFG00000006023)	SLC6A19 (ENSLAFG00000005422)	ENSLAFG00000029202	ANKRD33B (ENSLAFG00000011206) #11	DAP (ENSLAFG00000011209)	CTNND2 (ENSLAFG00000007728) #13	DNAH5 (ENSLAFG00000012310) #14	TRIO (ENSLAFG00000007860) #15	OTULINL (ENSLAFG00000011190) #16	OTULIN (ENSLAFG00000025751) #18	ANKH (ENSLAFG00000002813) #20	FBXL7 (ENSLAFG00000013099) #22	ENSLAFG00000006191 #23	ZNF622 (ENSLAFG00000031794) #24	RETREG1 (ENSLAFG00000018195) #25	MYO10 (ENSLAFG00000004123) #26	ENSLAFG00000003845	CDH12 (ENSLAFG00000017027)	CDH10 (ENSLAFG00000008284)	CDH9 (ENSLAFG00000018440)	CDH6 (ENSLAFG00000007375)	DROSHA (ENSLAFG00000013831)	C5orf22 (ENSLAFG00000013850)	ENSLAFG00000029968	PDZD2 (ENSLAFG00000007149)	GOLPH3 (ENSLAFG00000007155)	MTMR12 (ENSLAFG00000017955)
Hyrax	MODERN SPECIES	10205																FBXL7 (ENSPCAG00000016114) #22
Marsupialia	ANCESTRAL SPECIES	1	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00950000185637	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.b #15	ENSGT00940000166969.b	ENSGT00940000154766.a.a.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Opossum	MODERN SPECIES	2	ENSMODG00000025607	ENSMODG00000002471	ENSMODG00000045468	CTNND2 (ENSMODG00000002489) #13	ENSMODG00000036425	ENSMODG00000017321	ENSMODG00000049658	DNAH5 (ENSMODG00000002817) #14	ENSMODG00000002909 #15	ENSMODG00000039565 #15	OTULINL (ENSMODG00000002927) #16	OTULIN (ENSMODG00000002941) #18	ANKH (ENSMODG00000002970) #20	ENSMODG00000036561	ENSMODG00000029539	FBXL7 (ENSMODG00000003438) #22	MARCHF11 (ENSMODG00000003445) #23	ENSMODG00000037624	ZNF622 (ENSMODG00000003459) #24	RETREG1 (ENSMODG00000038378) #25	MYO10 (ENSMODG00000003552) #26	ENSMODG00000003560 #27	ENSMODG00000003590	ENSMODG00000029590	CDH18 (ENSMODG00000003670)	ENSMODG00000044928	CDH12 (ENSMODG00000003756)	ENSMODG00000044359	CDH10 (ENSMODG00000004059)	ENSMODG00000039051	ENSMODG00000046253
Marsupialia_b	ANCESTRAL SPECIES	2	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.b #15	ENSGT00940000166969.b	ENSGT00940000154766.a.a.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Diprotodontia	ANCESTRAL SPECIES	1	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.b #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167	ENSGT00730000111317
Diprotodontia_a	ANCESTRAL SPECIES		ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988 #7	ENSGT00390000000183 #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.b #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450.b #27	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00390000009405.e.a.b	ENSGT01020000230695	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469
Common wonbat	MODERN SPECIES	1028	MARCHF6 (ENSVURG00010021297) #9	ROPN1L (ENSVURG00010021288) #10	ANKRD33B (ENSVURG00010021286) #11	DAP (ENSVURG00010021276)	ENSVURG00010021266 #13	ENSVURG00010021260	ENSVURG00010021256	ENSVURG00010021228	ENSVURG00010021225	DNAH5 (ENSVURG00010021185) #14	TRIO (ENSVURG00010021149) #15	OTULINL (ENSVURG00010021137) #16	OTULIN (ENSVURG00010021135) #18	ANKH (ENSVURG00010021123) #20	ENSVURG00010021114	FBXL7 (ENSVURG00010021107) #22	MARCHF11 (ENSVURG00010021104) #23	ZNF622 (ENSVURG00010021097) #24	RETREG1 (ENSVURG00010021092) #25	MYO10 (ENSVURG00010021079) #26	ENSVURG00010021069 #27	ENSVURG00010021066	ENSVURG00010021063	ENSVURG00010021059	CDH18 (ENSVURG00010021029)	ENSVURG00010021025	ENSVURG00010021023	ENSVURG00010021019	ENSVURG00010021011	CDH12 (ENSVURG00010021006)	ENSVURG00010020988
koala	MODERN SPECIES	131						ENSPCIG00000026023	ENSPCIG00000026022	DNAH5 (ENSPCIG00000024266) #14	ENSPCIG00000002846 #15	ENSPCIG00000014044 #15	ENSPCIG00000031853	OTULINL (ENSPCIG00000014039) #16	OTULIN (ENSPCIG00000014035) #18	ANKH (ENSPCIG00000024004) #20	ENSPCIG00000024000	FBXL7 (ENSPCIG00000004033) #22	MARCHF11 (ENSPCIG00000003964) #23	ZNF622 (ENSPCIG00000025058) #24	RETREG1 (ENSPCIG00000025061) #25	MYO10 (ENSPCIG00000027061) #26	ENSPCIG00000027066 #27	ENSPCIG00000027069	ENSPCIG00000006733	CDH18 (ENSPCIG00000013480)
Wallaby	MODERN SPECIES	8961																FBXL7 (ENSMEUG00000002311) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000025425 #7	CMBL (ENSSHAG00000027779) #8	ENSSHAG00000029153 ##9	ENSSHAG00000030222	MARCHF6 (ENSSHAG00000000452) #9	ANKRD33B (ENSSHAG00000025830) #11	DAP (ENSSHAG00000029014)	CTNND2 (ENSSHAG00000026816) #13	ENSSHAG00000020832	DNAH5 (ENSSHAG00000006224) #14	ENSSHAG00000032390 #15	ENSSHAG00000008840 #15	OTULINL (ENSSHAG00000011137) #16	OTULIN (ENSSHAG00000011460) #18	ANKH (ENSSHAG00000011934) #20	FBXL7 (ENSSHAG00000010989) #22	MARCHF11 (ENSSHAG00000025647) #23	ZNF622 (ENSSHAG00000004315) #24	RETREG1 (ENSSHAG00000005315) #25	ENSSHAG00000007802	BASP1 (ENSSHAG00000024924) #27	ENSSHAG00000025423	CDH18 (ENSSHAG00000007404)	ENSSHAG00000027970	ENSSHAG00000032124	CDH12 (ENSSHAG00000009110)	ENSSHAG00000029966	CDH10 (ENSSHAG00000007764)	ENSSHAG00000021295	ENSSHAG00000031784	CDH9 (ENSSHAG00000004715)
Platypus	MODERN SPECIES	86	MTRR (ENSOANG00000011583)	SEMA5A (ENSOANG00000011586)	ATPSCKMT (ENSOANG00000011590)	CCT5 (ENSOANG00000011592) #7	CMBL (ENSOANG00000011594) #8	MARCHF6 (ENSOANG00000011595) #9	ROPN1L (ENSOANG00000011597) #10	ENSOANG00000011598 #11	DAP (ENSOANG00000011599)	CTNND2 (ENSOANG00000011600) #13	DNAH5 (ENSOANG00000011603) #14	TRIO (ENSOANG00000011610) #15	OTULINL (ENSOANG00000011613) #16	OTULIN (ENSOANG00000011614) #18	ANKH (ENSOANG00000011616) #20	FBXL7 (ENSOANG00000036368) #22	MARCHF11 (ENSOANG00000009145) #23	ZNF622 (ENSOANG00000021071) #24	RETREG1 (ENSOANG00000009147) #25	MYO10 (ENSOANG00000009146) #26	BASP1 (ENSOANG00000041988) #27	CDH18 (ENSOANG00000002498)	CDH12 (ENSOANG00000002500)	CDH10 (ENSOANG00000002504)	CDH9 (ENSOANG00000002505)	CDH6 (ENSOANG00000015746)	DROSHA (ENSOANG00000015744)	ENSOANG00000015740	WRNIP1 (ENSOANG00000015739)	ENSOANG00000044472	GMDS (ENSOANG00000029425)
Sauria	ANCESTRAL SPECIES		ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469
Lepidosauria	ANCESTRAL SPECIES	2	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Episquamata	ANCESTRAL SPECIES	1	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000012189 #20	ENSGT01090000260321	ENSGT00390000009802.b #18	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Laterata	ANCESTRAL SPECIES	5	ENSGT00940000157664	ENSGT00940000156325	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000012189 #20	ENSGT01090000260321	ENSGT00390000009802.b #18	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Common wall lizard	MODERN SPECIES	15	ENSPMRG00000005544	CDH18 (ENSPMRG00000005552)	ENSPMRG00000005560	ENSPMRG00000005566	ENSPMRG00000005571	ENSPMRG00000005574	ENSPMRG00000005581	BASP1 (ENSPMRG00000005584) #27	CTNND2 (ENSPMRG00000005602) #13	DNAH5 (ENSPMRG00000005858) #14	TRIO (ENSPMRG00000007268) #15	OTULINL (ENSPMRG00000010151) #16	ANKH (ENSPMRG00000010162) #20	ENSPMRG00000010173	OTULIN (ENSPMRG00000010182) #18	FBXL7 (ENSPMRG00000010193) #22	MARCHF11 (ENSPMRG00000010197) #23	ZNF622 (ENSPMRG00000010202) #24	ENSPMRG00000010209	MYO10 (ENSPMRG00000010277) #26	ENSPMRG00000010602	DAP (ENSPMRG00000010609)	ENSPMRG00000010613 #11	ENSPMRG00000010621 #11	ENSPMRG00000010633	ROPN1L (ENSPMRG00000010645) #10	MARCHF6 (ENSPMRG00000010662) #9	ENSPMRG00000010684 #8	ENSPMRG00000010688 #8	NFX1 (ENSPMRG00000010727)	ANKS6 (ENSPMRG00000010999)
Argentine black and white tegu	MODERN SPECIES	4										TRIO (ENSSMRG00000009677) #15	OTULINL (ENSSMRG00000009658) #16	ENSSMRG00000009655	ANKH (ENSSMRG00000009649) #20	OTULIN (ENSSMRG00000009604) #18	ENSSMRG00000009603	FBXL7 (ENSSMRG00000009602) #22	MARCHF11 (ENSSMRG00000009580) #23	ZNF622 (ENSSMRG00000009579) #24	RETREG1 (ENSSMRG00000009577) #25	MYO10 (ENSSMRG00000009537) #26	BASP1 (ENSSMRG00000009533) #27	ENSSMRG00000009517	CDH18 (ENSSMRG00000009457)	ENSSMRG00000009393	ENSSMRG00000009388	CDH10 (ENSSMRG00000009311)	ENSSMRG00000009261	CDH9 (ENSSMRG00000009260)	ENSSMRG00000009215	ENSSMRG00000009176	CDH6 (ENSSMRG00000009145)
Toxicofera	ANCESTRAL SPECIES	1	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000012189 #20	ENSGT01090000260321	ENSGT00390000009802.b #18	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Elapidae	ANCESTRAL SPECIES	8	ENSGT00940000156325	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000012189 #20	ENSGT00390000009802.b #18	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052.e	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Elapidae_a	ANCESTRAL SPECIES	35	ENSGT00940000156325	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000012189 #20	ENSGT00390000009802.b #18	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a.e	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052.f	ENSGT00730000111052.e	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469
Acanthophiinae	ANCESTRAL SPECIES	35	ENSGT00940000156325	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c.i	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000012189 #20	ENSGT00390000009802.b #18	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00990000212917	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a.e	ENSGT00940000160496.b.f	ENSGT00940000154673.a	ENSGT00730000111052.e	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469
Eastern brown snake	MODERN SPECIES	15	ANKS6 (ENSPTXG00000004146)	NFX1 (ENSPTXG00000004148)	ENSPTXG00000013218 #8	ENSPTXG00000013219 #8	MARCHF6 (ENSPTXG00000013220) #9	ROPN1L (ENSPTXG00000013221) #10	SNRNP48 (ENSPTXG00000013222)	ANKRD33B (ENSPTXG00000013224) #11	DAP (ENSPTXG00000013228)	CTNND2 (ENSPTXG00000013231) #13	DNAH5 (ENSPTXG00000013268) #14	TRIO (ENSPTXG00000013305) #15	OTULINL (ENSPTXG00000018075) #16	ANKH (ENSPTXG00000018077) #20	OTULIN (ENSPTXG00000018078) #18	FBXL7 (ENSPTXG00000018079) #22	MARCHF11 (ENSPTXG00000018080) #23	ZNF622 (ENSPTXG00000018081) #24	RETREG1 (ENSPTXG00000018082) #25	ENSPTXG00000018083	BASP1 (ENSPTXG00000018096) #27	ENSPTXG00000018097	ENSPTXG00000018098	CDH18 (ENSPTXG00000018100)	ENSPTXG00000018102	CDH10 (ENSPTXG00000018105)	ENSPTXG00000018107	ENSPTXG00000018108	CDH6 (ENSPTXG00000018111)	DROSHA (ENSPTXG00000018118)	C5orf22 (ENSPTXG00000018349)
Mainland tiger snake	MODERN SPECIES	52	ENSNSUG00000008910	ROPN1L (ENSNSUG00000008911) #10	SNRNP48 (ENSNSUG00000008912)	ENSNSUG00000008913 #11	ENSNSUG00000008914 #11	ENSNSUG00000008915	CTNND2 (ENSNSUG00000008916) #13	DNAH5 (ENSNSUG00000008930) #14	ENSNSUG00000008931 #15	ENSNSUG00000008936 #15	ENSNSUG00000008937	ENSNSUG00000008938	OTULINL (ENSNSUG00000008940) #16	ANKH (ENSNSUG00000008941) #20	OTULIN (ENSNSUG00000008942) #18	FBXL7 (ENSNSUG00000008944) #22	MARCHF11 (ENSNSUG00000008945) #23	ZNF622 (ENSNSUG00000008946) #24	RETREG1 (ENSNSUG00000008947) #25	MYO10 (ENSNSUG00000008954) #26	BASP1 (ENSNSUG00000008955) #27	ENSNSUG00000008956	CDH18 (ENSNSUG00000008957)	ENSNSUG00000008959	CDH10 (ENSNSUG00000008960)
Blue-lipped sea krait	MODERN SPECIES	1403																FBXL7 (ENSLLTG00000002042) #22
Indian cobra	MODERN SPECIES	2	ENSNNAG00000001535	ENSNNAG00000001560	ENSNNAG00000001585 #8	ENSNNAG00000001600 #8	MARCHF6 (ENSNNAG00000001667) #9	ROPN1L (ENSNNAG00000001800) #10	SNRNP48 (ENSNNAG00000001823)	ANKRD33B (ENSNNAG00000001844) #11	DAP (ENSNNAG00000001852)	CTNND2 (ENSNNAG00000001906) #13	DNAH5 (ENSNNAG00000002255) #14	TRIO (ENSNNAG00000003423) #15	OTULINL (ENSNNAG00000006877) #16	ANKH (ENSNNAG00000006906) #20	OTULIN (ENSNNAG00000006936) #18	FBXL7 (ENSNNAG00000006960) #22	MARCHF11 (ENSNNAG00000006973) #23	ZNF622 (ENSNNAG00000007008) #24	RETREG1 (ENSNNAG00000007045) #25	ENSNNAG00000007097	BASP1 (ENSNNAG00000007154) #27	CDH18 (ENSNNAG00000007160)	ENSNNAG00000007199	ENSNNAG00000007235	ENSNNAG00000007241	CDH10 (ENSNNAG00000007256)	CDH9 (ENSNNAG00000007322)	CDH6 (ENSNNAG00000007358)	DROSHA (ENSNNAG00000007626)	ENSNNAG00000010953	MC4R (ENSNNAG00000010965)
Lizard	MODERN SPECIES	3	CTNND2 (ENSACAG00000002855) #13	ENSACAG00000035387	ENSACAG00000006100	ENSACAG00000044597	ENSACAG00000038628	ENSACAG00000040668	ENSACAG00000044167	ENSACAG00000005926 #14	ENSACAG00000035441	TRIO (ENSACAG00000005742) #15	OTULINL (ENSACAG00000005616) #16	ENSACAG00000005537 #20	ENSACAG00000034640	ENSACAG00000000278 #18	ENSACAG00000036252	FBXL7 (ENSACAG00000000302) #22	MARCHF11 (ENSACAG00000000305) #23	ZNF622 (ENSACAG00000000306) #24	ENSACAG00000036779	RETREG1 (ENSACAG00000000324) #25	MYO10 (ENSACAG00000000351) #26	ENSACAG00000031093	PHACTR1 (ENSACAG00000004337)	ENSACAG00000004331	GFOD1 (ENSACAG00000043438)	ENSACAG00000041173	ENSACAG00000004251	ENSACAG00000004205	NUP153 (ENSACAG00000004118)	FAM8A1 (ENSACAG00000038018)	CAP2 (ENSACAG00000003976)
tuatara	MODERN SPECIES	1304												TRIO (ENSSPUG00000013484) #15	OTULINL (ENSSPUG00000013460) #16	OTULIN (ENSSPUG00000013452) #18	ANKH (ENSSPUG00000013437) #20	FBXL7 (ENSSPUG00000013432) #22	MARCHF11 (ENSSPUG00000013422) #23	ZNF622 (ENSSPUG00000013414) #24	RETREG1 (ENSSPUG00000013403) #25	ENSSPUG00000013397	MYO10 (ENSSPUG00000013300) #26	BASP1 (ENSSPUG00000013281) #27
Archelosauria	ANCESTRAL SPECIES	5	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Cryptodira	ANCESTRAL SPECIES	46	ENSGT00390000000183.h #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00390000000183.g.a #8	ENSGT00390000000183.h #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.bb #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00390000000183.g.a #8	ENSGT00390000000183.h #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.bb #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b
Abingdon island giant tortoise	MODERN SPECIES	1424													OTULIN (ENSCABG00000004542) #18	ENSCABG00000004545	ANKH (ENSCABG00000004547) #20	FBXL7 (ENSCABG00000004551) #22	MARCHF11 (ENSCABG00000004553) #23	ZNF622 (ENSCABG00000004555) #24	RETREG1 (ENSCABG00000004559) #25	MYO10 (ENSCABG00000004563) #26	BASP1 (ENSCABG00000004571) #27
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005003084 #8	ENSGEVG00005003097 #8	ENSGEVG00005003162 #8	MARCHF6 (ENSGEVG00005003254) #9	ROPN1L (ENSGEVG00005003331) #10	SNRNP48 (ENSGEVG00005003377)	ENSGEVG00005003384 #11	ENSGEVG00005003387 #11	DAP (ENSGEVG00005003390)	CTNND2 (ENSGEVG00005003403) #13	DNAH5 (ENSGEVG00005003470) #14	TRIO (ENSGEVG00005004120) #15	OTULINL (ENSGEVG00005008156) #16	OTULIN (ENSGEVG00005000104) #18	ANKH (ENSGEVG00005000152) #20	FBXL7 (ENSGEVG00005000212) #22	MARCHF11 (ENSGEVG00005000252) #23	ZNF622 (ENSGEVG00005000274) #24	RETREG1 (ENSGEVG00005000289) #25	MYO10 (ENSGEVG00005000330) #26	BASP1 (ENSGEVG00005000485) #27	CDH18 (ENSGEVG00005000511)	CDH12 (ENSGEVG00005000540)	ENSGEVG00005000556	ENSGEVG00005000572	ENSGEVG00005000582	ENSGEVG00005000595	CDH10 (ENSGEVG00005000637)	ENSGEVG00005000661	PGAM2 (ENSGEVG00005000671)	ENSGEVG00005000684
Emydidae	ANCESTRAL SPECIES	58	ENSGT00550000074988 #7	ENSGT00940000161663	ENSGT00390000000183.g.a #8	ENSGT00390000000183.h #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a.bb #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b
painted turtle	MODERN SPECIES	2374	FRMD7 (ENSCPBG00000025985)	ENSCPBG00000025983	IL13RA1 (ENSCPBG00000025982)	DOCK11 (ENSCPBG00000017094)	WDR44 (ENSCPBG00000016791)	ENSCPBG00000016783	ENSCPBG00000016775	ENSCPBG00000016772	AGTR2 (ENSCPBG00000016768)	ENSCPBG00000016766	PLS3 (ENSCPBG00000016758)	ENSCPBG00000016753	LRCH2 (ENSCPBG00000016747)	IL13RA2 (ENSCPBG00000016746)	HTR2C (ENSCPBG00000016745)	FBXL7 (ENSCPBG00000016741) #22	ENSCPBG00000016739	GDPD2 (ENSCPBG00000016737)	DLG3 (ENSCPBG00000016726)	ENSCPBG00000016711	SLC7A3 (ENSCPBG00000016709)	SNX12 (ENSCPBG00000016706)	FOXO4 (ENSCPBG00000016704)	ENSCPBG00000016700	CXorf65 (ENSCPBG00000016697)	ENSCPBG00000016695	MED12 (ENSCPBG00000016686)	NLGN3 (ENSCPBG00000016680)	GJB1 (ENSCPBG00000016675)	ENSCPBG00000016673	ZMYM3 (ENSCPBG00000016663)
Three-toed box turtle	MODERN SPECIES	16													OTULIN (ENSTMTG00000009890) #18	ENSTMTG00000009912	ANKH (ENSTMTG00000009924) #20	FBXL7 (ENSTMTG00000009953) #22	MARCHF11 (ENSTMTG00000009969) #23	ZNF622 (ENSTMTG00000010041) #24	RETREG1 (ENSTMTG00000010063) #25	ENSTMTG00000010089	MYO10 (ENSTMTG00000010257) #26	BASP1 (ENSTMTG00000012791) #27	CDH18 (ENSTMTG00000012802)	CDH12 (ENSTMTG00000012840)
Chinese turtle	MODERN SPECIES	625					MARCHF11 (ENSPSIG00000010335) #23	ENSPSIG00000001051	ENSPSIG00000010791	ENSPSIG00000001058	ENSPSIG00000011078 #14	ENSPSIG00000014126 #14	ENSPSIG00000014147 #15	ENSPSIG00000001075	OTULINL (ENSPSIG00000010476) #16	OTULIN (ENSPSIG00000011025) #18	ANKH (ENSPSIG00000011686) #20	FBXL7 (ENSPSIG00000013846) #22
Archosauria	ANCESTRAL SPECIES		ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Australian saltwater crocodile	MODERN SPECIES		CFAP90 (ENSCPRG00005014773)	MTRR (ENSCPRG00005014774)	SEMA5A (ENSCPRG00005014820)	ATPSCKMT (ENSCPRG00005014868)	CCT5 (ENSCPRG00005014871) #7	MARCHF6 (ENSCPRG00005014885) #9	ROPN1L (ENSCPRG00005014893) #10	ANKRD33B (ENSCPRG00005014899) #11	ENSCPRG00005014921	CTNND2 (ENSCPRG00005014971) #13	DNAH5 (ENSCPRG00005015027) #14	TRIO (ENSCPRG00005015283) #15	OTULINL (ENSCPRG00005016210) #16	OTULIN (ENSCPRG00005016220) #18	ANKH (ENSCPRG00005016224) #20	FBXL7 (ENSCPRG00005016244) #22	MARCHF11 (ENSCPRG00005016246) #23	ZNF622 (ENSCPRG00005016273) #24	RETREG1 (ENSCPRG00005016280) #25	MYO10 (ENSCPRG00005016306) #26	BASP1 (ENSCPRG00005016454) #27	ENSCPRG00005016456	ENSCPRG00005016472	CDH18 (ENSCPRG00005016488)	CDH12 (ENSCPRG00005016516)	CDH10 (ENSCPRG00005016543)	CDH9 (ENSCPRG00005016570)	ENSCPRG00005016585	CDH6 (ENSCPRG00005016599)	DROSHA (ENSCPRG00005016610)	C5orf22 (ENSCPRG00005016614)
Aves	ANCESTRAL SPECIES	24	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
African ostrich	MODERN SPECIES	792														OTULIN (ENSSCUG00000012179) #18	ANKH (ENSSCUG00000012169) #20	FBXL7 (ENSSCUG00000012155) #22
Neognathae	ANCESTRAL SPECIES		ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Galloanserae	ANCESTRAL SPECIES		ENSGT00390000000183.g.a.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.a ##9	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00940000166969.b	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Anatidae	ANCESTRAL SPECIES	1	ENSGT00940000154843.F	ENSGT00940000157075	ENSGT00400000022103.a	ENSGT00940000157533	ENSGT00390000018605	ENSGT01050000244939.a.a.a	ENSGT00530000063853.a.a.b	ENSGT00940000158071	ENSGT00940000157289.a	ENSGT00940000163747	ENSGT00390000014167	ENSGT00940000155106	ENSGT00940000155105	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b
Pink-footed goose	MODERN SPECIES	98	SSR1 (ENSABRG00000005326)	RREB1 (ENSABRG00000005337)	LY86 (ENSABRG00000005360)	ENSABRG00000005368	F13A1 (ENSABRG00000005376)	ENSABRG00000005402	FARS2 (ENSABRG00000005420)	ENSABRG00000005454	PPP1R3G (ENSABRG00000005458)	ENSABRG00000005462	RPP40 (ENSABRG00000005475)	ENSABRG00000005477	ECI2 (ENSABRG00000005485)	OTULIN (ENSABRG00000005499) #18	ANKH (ENSABRG00000005512) #20	FBXL7 (ENSABRG00000005546) #22	MARCHF11 (ENSABRG00000005560) #23	ZNF622 (ENSABRG00000005569) #24	RETREG1 (ENSABRG00000005583) #25	MYO10 (ENSABRG00000005713) #26	BASP1 (ENSABRG00000006742) #27	ENSABRG00000006759
Duck	MODERN SPECIES	10	RIOK1 (ENSAPLG00000004196)	SSR1 (ENSAPLG00000004473)	RREB1 (ENSAPLG00000004726)	LY86 (ENSAPLG00000030505)	ENSAPLG00000020381	F13A1 (ENSAPLG00000005008)	NRN1 (ENSAPLG00000021023)	FARS2 (ENSAPLG00000005643)	ENSAPLG00000025581	PPP1R3G (ENSAPLG00000024792)	RPP40 (ENSAPLG00000005691)	ENSAPLG00000005925	ECI2 (ENSAPLG00000006010)	OTULIN (ENSAPLG00000006391) #18	ANKH (ENSAPLG00000006461) #20	FBXL7 (ENSAPLG00000006921) #22	MARCHF11 (ENSAPLG00000006967) #23	ZNF622 (ENSAPLG00000006976) #24	RETREG1 (ENSAPLG00000007153) #25	MYO10 (ENSAPLG00000007175) #26	BASP1 (ENSAPLG00000011462) #27	CDH18 (ENSAPLG00000005731)	ENSAPLG00000024985	ENSAPLG00000014337	ENSAPLG00000008266	ENSAPLG00000027763	ENSAPLG00000008560	SERPINB11 (ENSAPLG00000027357)	SERPINB5 (ENSAPLG00000022949)	VPS4B (ENSAPLG00000006557)	KDSR (ENSAPLG00000006943)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00550000074988 #7	ENSGT00940000161663	ENSGT00390000000183.g.a.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00550000074988 #7	ENSGT00940000161663	ENSGT00390000000183.g.a.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154673.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317
Chicken	MODERN SPECIES	11	ENSGALG00010000797 #8	ENSGALG00010000794	ENSGALG00010000792 #8	MARCH6 (ENSGALG00010000790) #9	ROPN1L (ENSGALG00010000789) #10	SNRNP48 (ENSGALG00010000787)	ANKRD33B (ENSGALG00010000786) #11	DAP (ENSGALG00010000783)	ENSGALG00010000799 #13	ENSGALG00010000798 #13	DNAH5 (ENSGALG00010000590) #14	TRIO (ENSGALG00010000753) #15	FAM105A (ENSGALG00010000741) #16	OTULIN (ENSGALG00010000728) #18	ANKH (ENSGALG00010000722) #20	FBXL7 (ENSGALG00010000714) #22	MARCHF11 (ENSGALG00010000605) #23	ZNF622 (ENSGALG00010000603) #24	RETREG1 (ENSGALG00010000599) #25	MYO10 (ENSGALG00010000595) #26	BASP1 (ENSGALG00010000822) #27	CDH18 (ENSGALG00010000814)	CDH12 (ENSGALG00010000770)	ENSGALG00010000768	CDH10 (ENSGALG00010000760)	ENSGALG00010000594	ENSGALG00010000600	CDH9 (ENSGALG00010000597)	ENSGALG00010011053	ENSGALG00010011048	CDH6 (ENSGALG00010011040)
Turkey	MODERN SPECIES	22	CCT5 (ENSMGAG00000006124) #7	ENSMGAG00000006120	ENSMGAG00000006110 #8	ENSMGAG00000019350 #8	MARCHF6 (ENSMGAG00000006048) #9	ROPN1L (ENSMGAG00000006020) #10	ENSMGAG00000006037	ANKRD33B (ENSMGAG00000006014) #11	DAP (ENSMGAG00000006012)	CTNND2 (ENSMGAG00000017240) #13	DNAH5 (ENSMGAG00000005882) #14	TRIO (ENSMGAG00000005861) #15	OTULINL (ENSMGAG00000005845) #16	OTULIN (ENSMGAG00000005837) #18	ANKH (ENSMGAG00000005791) #20	FBXL7 (ENSMGAG00000005758) #22	MARCHF11 (ENSMGAG00000005750) #23	ZNF622 (ENSMGAG00000005719) #24	RETREG1 (ENSMGAG00000005703) #25	MYO10 (ENSMGAG00000005628) #26	BASP1 (ENSMGAG00000015420) #27	ENSMGAG00000005603	ENSMGAG00000017283	CDH18 (ENSMGAG00000005465)	ENSMGAG00000018910	MBOAT1 (ENSMGAG00000002523)	ENSMGAG00000017871	ENSMGAG00000002510	CDKAL1 (ENSMGAG00000002506)	ENSMGAG00000008471	ENSMGAG00000008423
Japanese quail	MODERN SPECIES	11	ENSCJPG00005014922 #8	ENSCJPG00005014923 #8	MARCHF6 (ENSCJPG00005014940) #9	ROPN1L (ENSCJPG00005014941) #10	SNRNP48 (ENSCJPG00005014942)	ANKRD33B (ENSCJPG00005014943) #11	DAP (ENSCJPG00005014944)	CTNND2 (ENSCJPG00005014946) #13	DNAH5 (ENSCJPG00005014950) #14	ENSCJPG00005014953 #15	ANKH (ENSCJPG00005015490) #20	ENSCJPG00005015491 #15	OTULINL (ENSCJPG00005015509) #16	OTULIN (ENSCJPG00005015510) #18	ENSCJPG00005015511	FBXL7 (ENSCJPG00005015513) #22	MARCHF11 (ENSCJPG00005015515) #23	ZNF622 (ENSCJPG00005015517) #24	RETREG1 (ENSCJPG00005015518) #25	MYO10 (ENSCJPG00005015519) #26	BASP1 (ENSCJPG00005015520) #27	CDH18 (ENSCJPG00005015532)	CDH12 (ENSCJPG00005015536)	CDH10 (ENSCJPG00005015544)	CDH9 (ENSCJPG00005015547)	CDH6 (ENSCJPG00005015558)	DROSHA (ENSCJPG00005015599)	C5orf22 (ENSCJPG00005015600)	MC4R (ENSCJPG00005015602)	ENSCJPG00005015604	ENSCJPG00005015608
Neognathae_b	ANCESTRAL SPECIES	3	ENSGT00940000161663	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317
Neognathae_c	ANCESTRAL SPECIES	1	ENSGT00940000161663	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317
Kakapo	MODERN SPECIES		ENSSHBG00005008208	TMX3 (ENSSHBG00005008246)	ENSSHBG00005008264	DOK6 (ENSSHBG00005008281)	ENSSHBG00005008294	ENSSHBG00005008316	ENSSHBG00005008344	SOCS6 (ENSSHBG00005008363)	CBLN2 (ENSSHBG00005008367)	NETO1 (ENSSHBG00005008375)	DNAH5 (ENSSHBG00005008454) #14	TRIO (ENSSHBG00005009169) #15	OTULINL (ENSSHBG00005014443) #16	OTULIN (ENSSHBG00005014451) #18	ANKH (ENSSHBG00005014471) #20	FBXL7 (ENSSHBG00005014489) #22	MARCHF11 (ENSSHBG00005014500) #23	ZNF622 (ENSSHBG00005014514) #24	RETREG1 (ENSSHBG00005014529) #25	MYO10 (ENSSHBG00005014633) #26	BASP1 (ENSSHBG00005014787) #27	CDH18 (ENSSHBG00005014801)	CDH12 (ENSSHBG00005014815)	CDH10 (ENSSHBG00005014826)	ENSSHBG00005014843	CDH9 (ENSSHBG00005014849)	CDH6 (ENSSHBG00005014868)	ENSSHBG00005014876	DROSHA (ENSSHBG00005000539)	C5orf22 (ENSSHBG00005000583)	MC4R (ENSSHBG00005007263)
Golden eagle	MODERN SPECIES	9	ENSACCG00020013004 #8	MARCHF6 (ENSACCG00020013077) #9	ROPN1L (ENSACCG00020013137) #10	SNRNP48 (ENSACCG00020013167)	ENSACCG00020013193 #11	ENSACCG00020013213 #11	DAP (ENSACCG00020013235)	ENSACCG00020013278 #13	ENSACCG00020013316 #13	ENSACCG00020013332 #14	TRIO (ENSACCG00020014021) #15	OTULINL (ENSACCG00020014470) #16	OTULIN (ENSACCG00020014488) #18	ENSACCG00020014505	ANKH (ENSACCG00020014517) #20	FBXL7 (ENSACCG00020014543) #22	MARCHF11 (ENSACCG00020014555) #23	ZNF622 (ENSACCG00020014572) #24	RETREG1 (ENSACCG00020014595) #25	ENSACCG00020014615	BASP1 (ENSACCG00020014643) #27	CDH18 (ENSACCG00020014660)	ENSACCG00020014679	ENSACCG00020014702	CDH10 (ENSACCG00020014718)	CDH9 (ENSACCG00020014741)	ENSACCG00020014771	CDH6 (ENSACCG00020014800)	DROSHA (ENSACCG00020014847)	C5orf22 (ENSACCG00020014892)	MC4R (ENSACCG00020014915)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000161663	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317
Great tit	MODERN SPECIES	11	ENSPMJG00000006254	ENSPMJG00000006252 #8	ENSPMJG00000006232 #8	MARCHF6 (ENSPMJG00000006216) #9	ROPN1L (ENSPMJG00000006209) #10	SNRNP48 (ENSPMJG00000006195)	ENSPMJG00000006189 #11	ENSPMJG00000006188 #11	DAP (ENSPMJG00000006187)	CTNND2 (ENSPMJG00000005003) #13	DNAH5 (ENSPMJG00000003714) #14	TRIO (ENSPMJG00000003674) #15	OTULINL (ENSPMJG00000003634) #16	OTULIN (ENSPMJG00000003628) #18	ANKH (ENSPMJG00000003609) #20	FBXL7 (ENSPMJG00000003474) #22	MARCHF11 (ENSPMJG00000003442) #23	ZNF622 (ENSPMJG00000003437) #24	RETREG1 (ENSPMJG00000003430) #25	MYO10 (ENSPMJG00000003347) #26	BASP1 (ENSPMJG00000003334) #27	CDH18 (ENSPMJG00000003298)	ENSPMJG00000002985	GRB10 (ENSPMJG00000002920)	DDC (ENSPMJG00000002903)	FIGNL1 (ENSPMJG00000002898)	IKZF1 (ENSPMJG00000002694)	VWC2 (ENSPMJG00000002682)	CDH12 (ENSPMJG00000002485)	CDH10 (ENSPMJG00000002282)	CDH9 (ENSPMJG00000002238)
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000161663	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT01090000260321	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317
Flycatcher	MODERN SPECIES	11	ENSFALG00000026087	ENSFALG00000007815 #8	ENSFALG00000007809 #8	MARCHF6 (ENSFALG00000007802) #9	ROPN1L (ENSFALG00000026260) #10	ENSFALG00000007797	ANKRD33B (ENSFALG00000007796) #11	DAP (ENSFALG00000026204)	CTNND2 (ENSFALG00000007784) #13	DNAH5 (ENSFALG00000007364) #14	TRIO (ENSFALG00000007445) #15	OTULINL (ENSFALG00000024218) #16	OTULIN (ENSFALG00000007473) #18	ENSFALG00000026822	ANKH (ENSFALG00000007483) #20	FBXL7 (ENSFALG00000025992) #22	MARCHF11 (ENSFALG00000007497) #23	ZNF622 (ENSFALG00000007501) #24	RETREG1 (ENSFALG00000028884) #25	MYO10 (ENSFALG00000007507) #26	BASP1 (ENSFALG00000014299) #27	CDH18 (ENSFALG00000007516)	CDH12 (ENSFALG00000007539)	CDH10 (ENSFALG00000007598)	CDH9 (ENSFALG00000012759)	CDH6 (ENSFALG00000012791)	DROSHA (ENSFALG00000012843)	C5orf22 (ENSFALG00000012879)	ENSFALG00000014730	CDH20 (ENSFALG00000012917)	RNF152 (ENSFALG00000014751)
Passeriformes_g	ANCESTRAL SPECIES	3	ENSGT00550000074988 #7	ENSGT00940000161663	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d.c #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000158167	ENSGT00730000111317
Passeroidea	ANCESTRAL SPECIES	2	ENSGT00550000074988 #7	ENSGT00940000161663	ENSGT00390000000183.g.a #8	ENSGT00390000000183.g.b #8	ENSGT00940000155171.a.b #9	ENSGT00390000012731.a.a #10	ENSGT00390000004886	ENSGT00500000044852.a #11	ENSGT00940000154574.c	ENSGT00940000154952.a.b #13	ENSGT00940000155533.d.c #14	ENSGT00940000154766.a.a #15	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00960000191202	ENSGT00940000158167
Common canary	MODERN SPECIES		ENSSCAG00000004578 #8	ENSSCAG00000004574 #8	MARCHF6 (ENSSCAG00000004567) #9	ROPN1L (ENSSCAG00000004562) #10	SNRNP48 (ENSSCAG00000004553)	ANKRD33B (ENSSCAG00000004533) #11	DAP (ENSSCAG00000004526)	CTNND2 (ENSSCAG00000004440) #13	ENSSCAG00000004377 #14	ENSSCAG00000004333 #14	ENSSCAG00000004325 #14	TRIO (ENSSCAG00000004308) #15	OTULINL (ENSSCAG00000004288) #16	OTULIN (ENSSCAG00000004273) #18	ANKH (ENSSCAG00000004265) #20	FBXL7 (ENSSCAG00000004243) #22	ENSSCAG00000004232 #23	ZNF622 (ENSSCAG00000004227) #24	RETREG1 (ENSSCAG00000004221) #25	MYO10 (ENSSCAG00000004205) #26	BASP1 (ENSSCAG00000004194) #27	CDH18 (ENSSCAG00000004161)	CDH12 (ENSSCAG00000004098)	ENSSCAG00000004047	CDH10 (ENSSCAG00000004024)	CDH9 (ENSSCAG00000003904)	CDH6 (ENSSCAG00000003748)	DROSHA (ENSSCAG00000003730)	C5orf22 (ENSSCAG00000003726)	MC4R (ENSSCAG00000003721)	ENSSCAG00000003701
Zebra finch	MODERN SPECIES	12	SBK2 (ENSTGUG00000021210)	ENSTGUG00000007622 #8	ENSTGUG00000007618 #8	MARCHF6 (ENSTGUG00000007587) #9	ROPN1L (ENSTGUG00000007586) #10	SNRNP48 (ENSTGUG00000007575)	ANKRD33B (ENSTGUG00000026776) #11	ENSTGUG00000027879	ENSTGUG00000007531 #13	ENSTGUG00000027510 #13	ENSTGUG00000007486 #14	TRIO (ENSTGUG00000007442) #15	OTULINL (ENSTGUG00000007437) #16	OTULIN (ENSTGUG00000007427) #18	ANKH (ENSTGUG00000007404) #20	FBXL7 (ENSTGUG00000027230) #22	MARCHF11 (ENSTGUG00000007392) #23	ZNF622 (ENSTGUG00000007377) #24	MYO10 (ENSTGUG00000007271) #26	BASP1 (ENSTGUG00000007269) #27	CDH18 (ENSTGUG00000007189)	IGFBP3 (ENSTGUG00000028736)	IGFBP1 (ENSTGUG00000007176)	ADCY1 (ENSTGUG00000007142)	RAMP3 (ENSTGUG00000025072)	TNS3 (ENSTGUG00000007104)	HUS1 (ENSTGUG00000007091)	ENSTGUG00000007087	NFX1 (ENSTGUG00000007055)	ENSTGUG00000006931	ENSTGUG00000019076
Medium ground finch	MODERN SPECIES	43	SBK2 (ENSGFOG00000012218)	ENSGFOG00000012223 #8	ENSGFOG00000012228 #8	MARCHF6 (ENSGFOG00000012243) #9	ROPN1L (ENSGFOG00000012258) #10	SNRNP48 (ENSGFOG00000012263)	ANKRD33B (ENSGFOG00000012281) #11	DAP (ENSGFOG00000012339)	ENSGFOG00000012345 #13	ENSGFOG00000012362 #13	DNAH5 (ENSGFOG00000012373) #14	TRIO (ENSGFOG00000012551) #15	OTULINL (ENSGFOG00000012937) #16	OTULIN (ENSGFOG00000012939) #18	ANKH (ENSGFOG00000012941) #20	FBXL7 (ENSGFOG00000012944) #22	MARCHF11 (ENSGFOG00000012947) #23	ZNF622 (ENSGFOG00000012949) #24	RETREG1 (ENSGFOG00000012951) #25	MYO10 (ENSGFOG00000012959) #26	BASP1 (ENSGFOG00000013004) #27	CDH18 (ENSGFOG00000001505)	CDH12 (ENSGFOG00000001518)
Anura	ANCESTRAL SPECIES	1	ENSGT00940000160714	ENSGT00940000156387.a	ENSGT00450000040303	ENSGT01030000234543.F	ENSGT00390000000916	ENSGT00940000155783	ENSGT00390000014501	ENSGT00940000161612	ENSGT00940000153665.a	ENSGT00950000182886.b.b	ENSGT01030000234574.A.a	ENSGT00940000161224	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00940000164469	ENSGT00940000158167
Frog	MODERN SPECIES	6	ENSXETG00000048905	med10 (ENSXETG00000026404)	ube2ql1 (ENSXETG00000001734)	nsun2 (ENSXETG00000001732)	srd5a1 (ENSXETG00000001731)	lpcat1 (ENSXETG00000001729)	ENSXETG00000042490	ENSXETG00000045086	ENSXETG00000047371	slc6a3 (ENSXETG00000001728)	ENSXETG00000042575	otulinl (ENSXETG00000001727) #16	ENSXETG00000046322	otulin (ENSXETG00000001725) #18	ankh (ENSXETG00000001724) #20	fbxl7 (ENSXETG00000007541) #22	marchf11 (ENSXETG00000007540) #23	ENSXETG00000034605	znf622 (ENSXETG00000007539) #24	retreg1 (ENSXETG00000007538) #25	ENSXETG00000043673	ENSXETG00000045133	myo10 (ENSXETG00000007537) #26	ENSXETG00000042546	basp1 (ENSXETG00000021380) #27	ENSXETG00000041126	cdh18 (ENSXETG00000012238)	ENSXETG00000044741	cdh12 (ENSXETG00000020440)	cdh10 (ENSXETG00000002106)	ENSXETG00000046030
Leishan spiny toad	MODERN SPECIES	8	ELP2 (ENSLLEG00000018935)	GABBR2 (ENSLLEG00000019673)	ENSLLEG00000020200	ENSLLEG00000020259	ENSLLEG00000020312	MED10 (ENSLLEG00000020340)	UBE2QL1 (ENSLLEG00000020432)	NSUN2 (ENSLLEG00000020504)	SRD5A1 (ENSLLEG00000021076)	ENSLLEG00000021185	LPCAT1 (ENSLLEG00000021217)	SLC6A3 (ENSLLEG00000021446)	OTULINL (ENSLLEG00000021682) #16	OTULIN (ENSLLEG00000021770) #18	ANKH (ENSLLEG00000021937) #20	FBXL7 (ENSLLEG00000022086) #22	MARCHF11 (ENSLLEG00000022204) #23	ENSLLEG00000022374	ENSLLEG00000022392	ZNF622 (ENSLLEG00000022426) #24	ENSLLEG00000014589	ENSLLEG00000014651	ENSLLEG00000014848	MOCOS (ENSLLEG00000014900)	ENSLLEG00000015110	ENSLLEG00000015134	ENSLLEG00000015154	ENSLLEG00000015172	ENSLLEG00000015191	PTPN3 (ENSLLEG00000015249)	ENSLLEG00000015638
Coelacanth	MODERN SPECIES	389																FBXL7 (ENSLACG00000009967) #22	MARCHF11 (ENSLACG00000010477) #23	ZNF622 (ENSLACG00000011949) #24	RETREG1 (ENSLACG00000012286) #25	MYO10 (ENSLACG00000013439) #26	BASP1 (ENSLACG00000015519) #27
Actinopterygii	DUPLICATION
Actinopterygii	ANCESTRAL SPECIES																	ENSGT00940000158009.a #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT00940000158009.a #22
Osteoglossocephalai	ANCESTRAL SPECIES																	ENSGT00940000158009.a #22
Clupeocephala	ANCESTRAL SPECIES	150												ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00930000151367.d.b	ENSGT00390000016415	ENSGT00390000017582
Euteleosteomorpha	ANCESTRAL SPECIES	31	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.n	ENSGT00940000158727.a	ENSGT00940000164060.m	ENSGT00940000158727.b.a.a.b	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00930000151367.d.b	ENSGT00390000016415	ENSGT00390000017582
Acanthomorphata	ANCESTRAL SPECIES	17	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000158727.b.a.a.b	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000158727.b.a.a.b	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Percomorphaceae	ANCESTRAL SPECIES	28	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Tiger tail seahorse	MODERN SPECIES	337								rdh12l (ENSHCOG00000012770)	ca2 (ENSHCOG00000012756)	ENSHCOG00000012744	ENSHCOG00000012739	RALYL (ENSHCOG00000012719)	ENSHCOG00000012706	ralaa (ENSHCOG00000012702)	ENSHCOG00000012691	FBXL7 (ENSHCOG00000012659) #22	gad2 (ENSHCOG00000012625)	myo3a (ENSHCOG00000000855)	anxa13 (ENSHCOG00000012308)	GPR158 (ENSHCOG00000012271)	enkur (ENSHCOG00000012218)	ENSHCOG00000012153	ARHGAP21 (ENSHCOG00000012098)	apodb (ENSHCOG00000011798)	otos (ENSHCOG00000011794)	cops9 (ENSHCOG00000011786)	and1 (ENSHCOG00000011766)	ENSHCOG00000011720	ENSHCOG00000011644	tfr1b (ENSHCOG00000011624)	ENSHCOG00000011617
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415
Eupercaria	ANCESTRAL SPECIES	20	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415
Tetraodontidae	ANCESTRAL SPECIES	18	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000162058	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Tetraodon	MODERN SPECIES	21	THNSL1 (ENSTNIG00000013642)	pdss1 (ENSTNIG00000013643)	ENSTNIG00000013644	abi1a (ENSTNIG00000013645)	acbd5a (ENSTNIG00000013646)	mastl (ENSTNIG00000013647)	YME1L1 (ENSTNIG00000013648)	ENSTNIG00000013649	ENSTNIG00000013650	rdh12l (ENSTNIG00000013651)	ca2 (ENSTNIG00000013652)	ENSTNIG00000013653	ENSTNIG00000013654	ralaa (ENSTNIG00000013655)	ENSTNIG00000000348	FBXL7 (ENSTNIG00000013656) #22	ENSTNIG00000013657	ENSTNIG00000013658	tbcc (ENSTNIG00000013659)	IMPA1 (ENSTNIG00000013660)	ENSTNIG00000013661	CDH7 (ENSTNIG00000013662)	ENSTNIG00000013663	DSEL (ENSTNIG00000013664)	TMX3 (ENSTNIG00000013665)	PXDC1 (ENSTNIG00000013666)	prpf4bb (ENSTNIG00000013667)	gli3 (ENSTNIG00000013668)	CCR9 (ENSTNIG00000013669)	lztfl1 (ENSTNIG00000013670)	DNAJC13 (ENSTNIG00000013671)
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.e.b	ENSGT00760000120378	ENSGT00390000017291.a.e.e.a	ENSGT00390000017291.a.e.f	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.e.b	ENSGT00760000120378	ENSGT00390000017291.a.e.f	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e
Perciformes	ANCESTRAL SPECIES	21	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00940000160169	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e.f	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925.v.b	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Perciformes_a	ANCESTRAL SPECIES	22	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00940000160169	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.f	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925.v.b	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Pike perch	MODERN SPECIES	140	abi1a (ENSSLUG00000019007)	acbd5a (ENSSLUG00000019063)	mastl (ENSSLUG00000019069)	YME1L1 (ENSSLUG00000019115)	ENSSLUG00000020009	fasn2 (ENSSLUG00000020014)	rdh12l (ENSSLUG00000020017)	ca2 (ENSSLUG00000020019)	rad51b (ENSSLUG00000020022)	ENSSLUG00000020023	ENSSLUG00000020026	RALYL (ENSSLUG00000020030)	ENSSLUG00000020033	ralaa (ENSSLUG00000020042)	zgc:111976 (ENSSLUG00000020049)	FBXL7 (ENSSLUG00000020054) #22	ENSSLUG00000020061	ENSSLUG00000020067	ENSSLUG00000009431	IMPA1 (ENSSLUG00000009444)	ENSSLUG00000009458
Channel bull blenny	MODERN SPECIES	12	pdss1 (ENSCGOG00000015738)	abi1a (ENSCGOG00000015290)	acbd5a (ENSCGOG00000015251)	mastl (ENSCGOG00000015245)	YME1L1 (ENSCGOG00000014425)	ENSCGOG00000014360	fasn2 (ENSCGOG00000014353)	fasn2 (ENSCGOG00000014346)	rdh12l (ENSCGOG00000014344)	ca2 (ENSCGOG00000014240)	rad51b (ENSCGOG00000014235)	ENSCGOG00000014232	ENSCGOG00000014226	ENSCGOG00000014202	ralaa (ENSCGOG00000014177)	FBXL7 (ENSCGOG00000014172) #22	ENSCGOG00000014158	ENSCGOG00000014154	IMPA1 (ENSCGOG00000013998)	ENSCGOG00000013926	CDH7 (ENSCGOG00000012585)	ENSCGOG00000012560	TMX3 (ENSCGOG00000023304)	PXDC1 (ENSCGOG00000023300)	prpf4bb (ENSCGOG00000023299)	gli3 (ENSCGOG00000023297)	ENSCGOG00000023295	ENSCGOG00000023293	CCR9 (ENSCGOG00000023289)	lztfl1 (ENSCGOG00000023282)	topbp1 (ENSCGOG00000022933)
Cottioidei	ANCESTRAL SPECIES	21	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00940000160169	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e.f	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925.v.b	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Lumpfish	MODERN SPECIES	12	pdss1 (ENSCLMG00005022842)	abi1a (ENSCLMG00005022844)	acbd5a (ENSCLMG00005022846)	mastl (ENSCLMG00005022847)	YME1L1 (ENSCLMG00005022849)	ENSCLMG00005022871	fasn2 (ENSCLMG00005022872)	rdh12l (ENSCLMG00005022873)	ca2 (ENSCLMG00005022874)	rad51b (ENSCLMG00005022875)	ENSCLMG00005022876	ENSCLMG00005022877	ENSCLMG00005022878	ralaa (ENSCLMG00005022880)	zgc:111976 (ENSCLMG00005022881)	FBXL7 (ENSCLMG00005022882) #22	ENSCLMG00005008071	ENSCLMG00005008072	ENSCLMG00005008073	IMPA1 (ENSCLMG00005008074)	ENSCLMG00005008076	CDH7 (ENSCLMG00005008087)	ENSCLMG00005008912	DSEL (ENSCLMG00005008918)	TMX3 (ENSCLMG00005008926)	PXDC1 (ENSCLMG00005009333)	prpf4bb (ENSCLMG00005009339)	gli3 (ENSCLMG00005009375)	CCR9 (ENSCLMG00005009376)	lztfl1 (ENSCLMG00005009377)	DNAJC13 (ENSCLMG00005009383)
Stickleback	MODERN SPECIES	20	ENSGACG00000005134	pdss1 (ENSGACG00000005116)	abi1a (ENSGACG00000005109)	acbd5a (ENSGACG00000005097)	mastl (ENSGACG00000005087)	ENSGACG00000005074	fasn2 (ENSGACG00000005071)	rdh12l (ENSGACG00000005055)	ca2 (ENSGACG00000004999)	rad51b (ENSGACG00000004998)	ENSGACG00000004993	ENSGACG00000004991	ENSGACG00000004982	ralaa (ENSGACG00000004967)	zgc:111976 (ENSGACG00000004956)	FBXL7 (ENSGACG00000004953) #22	ENSGACG00000004949	ENSGACG00000004942	IMPA1 (ENSGACG00000004905)	ENSGACG00000004882	CDH7 (ENSGACG00000004878)	ENSGACG00000004873	DSEL (ENSGACG00000004870)	TMX3 (ENSGACG00000004863)	PXDC1 (ENSGACG00000004852)	prpf4bb (ENSGACG00000004845)	gli3 (ENSGACG00000004834)	CCR9 (ENSGACG00000004830)	lztfl1 (ENSGACG00000004804)	DNAJC13 (ENSGACG00000004764)	topbp1 (ENSGACG00000004755)
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e.e.b	ENSGT00980000198573.a.b	ENSGT00390000017291.a.e.f	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e
Gilthead seabream	MODERN SPECIES	10	ENSSAUG00010016604	pdss1 (ENSSAUG00010016594)	abi1a (ENSSAUG00010016517)	acbd5a (ENSSAUG00010016510)	mastl (ENSSAUG00010016506)	YME1L1 (ENSSAUG00010015803)	ENSSAUG00010015741	fasn2 (ENSSAUG00010015737)	rdh12l (ENSSAUG00010015731)	ENSSAUG00010015727	ca2 (ENSSAUG00010015717)	ENSSAUG00010015711	ENSSAUG00010015683	ralaa (ENSSAUG00010015673)	zgc:111976 (ENSSAUG00010015669)	FBXL7 (ENSSAUG00010015667) #22	ENSSAUG00010015665	ENSSAUG00010015662	ENSSAUG00010015658	ENSSAUG00010015655	ENSSAUG00010015650	IMPA1 (ENSSAUG00010015647)	ENSSAUG00010015644	CDH7 (ENSSAUG00010022823)	ENSSAUG00010022809	DSEL (ENSSAUG00010022808)	TMX3 (ENSSAUG00010022579)	PXDC1 (ENSSAUG00010022569)	prpf4bb (ENSSAUG00010022377)	ENSSAUG00010022369	cry-dash (ENSSAUG00010022353)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e.e.b	ENSGT00980000198573.a.b	ENSGT00390000017291.a.e.f	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e
European seabass	MODERN SPECIES	8	pdss1 (ENSDLAG00005020867)	abi1a (ENSDLAG00005020805)	acbd5a (ENSDLAG00005020860)	ENSDLAG00005002516	mastl (ENSDLAG00005020768)	YME1L1 (ENSDLAG00005020501)	ENSDLAG00005020479	ENSDLAG00005020462	RDH12 (ENSDLAG00005020447)	ca2 (ENSDLAG00005020435)	ENSDLAG00005027545	ENSDLAG00005020419	ENSDLAG00005020109	RALA (ENSDLAG00005027457)	zgc:111976 (ENSDLAG00005031816)	ENSDLAG00005020061 #22	ENSDLAG00005020046	ENSDLAG00005027155	ENSDLAG00005027259	ENSDLAG00005019997	ENSDLAG00005019957	ENSDLAG00005019941	CDH7 (ENSDLAG00005018907)	ENSDLAG00005018832	ENSDLAG00005034393	TMX3 (ENSDLAG00005018419)	ENSDLAG00005031002	ENSDLAG00005018128	ENSDLAG00005018034	ENSDLAG00005018027	ENSDLAG00005018018
Large yellow croaker	MODERN SPECIES	494	ENSLCRG00005017970	pdss1 (ENSLCRG00005017973)	abi1a (ENSLCRG00005017988)	acbd5a (ENSLCRG00005018172)	mastl (ENSLCRG00005018175)	YME1L1 (ENSLCRG00005018193)	ENSLCRG00005019318	fasn2 (ENSLCRG00005019319)	rdh12l (ENSLCRG00005019320)	ca2 (ENSLCRG00005019322)	ENSLCRG00005019323	ENSLCRG00005019324	ENSLCRG00005019326	ralaa (ENSLCRG00005019368)	zgc:111976 (ENSLCRG00005019369)	FBXL7 (ENSLCRG00005019372) #22	ENSLCRG00005019373	ENSLCRG00005019374	ENSLCRG00005019377	ENSLCRG00005019380	IMPA1 (ENSLCRG00005019381)	ENSLCRG00005019386	CDH7 (ENSLCRG00005019392)	ENSLCRG00005019650	DSEL (ENSLCRG00005019652)	TMX3 (ENSLCRG00005019655)	PXDC1 (ENSLCRG00005012465)	prpf4bb (ENSLCRG00005012479)	ENSLCRG00005013353	ENSLCRG00005013364	lztfl1 (ENSLCRG00005013368)
Ballan wrasse	MODERN SPECIES	59	ENSLBEG00000010124	pdss1 (ENSLBEG00000010163)	abi1a (ENSLBEG00000010273)	acbd5a (ENSLBEG00000010434)	mastl (ENSLBEG00000010569)	YME1L1 (ENSLBEG00000010656)	ENSLBEG00000010754	fasn2 (ENSLBEG00000010807)	rdh12l (ENSLBEG00000010904)	ca2 (ENSLBEG00000010948)	ENSLBEG00000010979	ENSLBEG00000011011	ENSLBEG00000011043	ralaa (ENSLBEG00000011106)	zgc:111976 (ENSLBEG00000011144)	FBXL7 (ENSLBEG00000011195) #22	ENSLBEG00000011215	ENSLBEG00000011238	ENSLBEG00000011259	ENSLBEG00000011294	IMPA1 (ENSLBEG00000011318)	ENSLBEG00000011337	CDH7 (ENSLBEG00000011365)	ENSLBEG00000011416	DSEL (ENSLBEG00000011460)	TMX3 (ENSLBEG00000011491)	PXDC1 (ENSLBEG00000011560)	prpf4bb (ENSLBEG00000011594)	gli3 (ENSLBEG00000011632)	ENSLBEG00000011688	CCR9 (ENSLBEG00000011710)
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415
Carangaria	ANCESTRAL SPECIES	21	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Barramundi perch	MODERN SPECIES	146	apbb1ip (ENSLCAG00010014198)	pdss1 (ENSLCAG00010014229)	abi1a (ENSLCAG00010014265)	acbd5a (ENSLCAG00010014319)	mastl (ENSLCAG00010014322)	YME1L1 (ENSLCAG00010014351)	ENSLCAG00010014372	fasn2 (ENSLCAG00010014374)	rdh12l (ENSLCAG00010014377)	ca2 (ENSLCAG00010014379)	ENSLCAG00010014383	ENSLCAG00010014384	zgc:111976 (ENSLCAG00010014387)	ENSLCAG00010014402	ralaa (ENSLCAG00010014430)	FBXL7 (ENSLCAG00010014435) #22	ENSLCAG00010014438	ENSLCAG00010014444	IMPA1 (ENSLCAG00010014460)	ENSLCAG00010014464	CDH7 (ENSLCAG00010014487)	ENSLCAG00010014522	DSEL (ENSLCAG00010014528)	TMX3 (ENSLCAG00010014535)	PXDC1 (ENSLCAG00010014546)	prpf4bb (ENSLCAG00010014558)	ENSLCAG00010014610	ENSLCAG00010014616	CCR9 (ENSLCAG00010014618)	lztfl1 (ENSLCAG00010014621)	DNAJC13 (ENSLCAG00010014647)
Seriola	ANCESTRAL SPECIES	27	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00940000180269	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000159794
Greater amberjack	MODERN SPECIES	57	apbb1ip (ENSSDUG00000007998)	pdss1 (ENSSDUG00000007966)	abi1a (ENSSDUG00000007914)	acbd5a (ENSSDUG00000007891)	mastl (ENSSDUG00000007873)	YME1L1 (ENSSDUG00000007797)	ENSSDUG00000007767	fasn2 (ENSSDUG00000007722)	rdh12l (ENSSDUG00000007679)	ca2 (ENSSDUG00000007654)	ENSSDUG00000007625	ENSSDUG00000007587	ENSSDUG00000007565	ralaa (ENSSDUG00000007547)	zgc:111976 (ENSSDUG00000007527)	FBXL7 (ENSSDUG00000007498) #22	ENSSDUG00000007483	ENSSDUG00000007456	ENSSDUG00000007431	IMPA1 (ENSSDUG00000007407)	ENSSDUG00000007386	CDH7 (ENSSDUG00000007356)	ENSSDUG00000007331	DSEL (ENSSDUG00000007324)	TMX3 (ENSSDUG00000007302)	ENSSDUG00000007296	ENSSDUG00000007280	PXDC1 (ENSSDUG00000007264)	chrnd (ENSSDUG00000007231)	ENSSDUG00000007214	ENSSDUG00000007198
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	3211	apbb1ip (ENSSLDG00000021011)	pdss1 (ENSSLDG00000020991)	abi1a (ENSSLDG00000020913)	acbd5a (ENSSLDG00000020816)	mastl (ENSSLDG00000020782)	YME1L1 (ENSSLDG00000020720)	ENSSLDG00000020692	fasn2 (ENSSLDG00000020656)	rdh12l (ENSSLDG00000020647)	ca2 (ENSSLDG00000020643)	ENSSLDG00000020638	ENSSLDG00000020603	ENSSLDG00000020589	ralaa (ENSSLDG00000020576)	zgc:111976 (ENSSLDG00000020498)	FBXL7 (ENSSLDG00000020481) #22	ENSSLDG00000020471	ENSSLDG00000020445	ENSSLDG00000020425	IMPA1 (ENSSLDG00000020397)	ENSSLDG00000020369	CDH7 (ENSSLDG00000020341)	ENSSLDG00000020279	DSEL (ENSSLDG00000020265)	TMX3 (ENSSLDG00000020236)	PXDC1 (ENSSLDG00000020214)	chrnd (ENSSLDG00000020192)
Yellowtail amberjack	MODERN SPECIES	2296																FBXL7 (ENSSLDG00000010578) #22
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Tongue sole	MODERN SPECIES	13	ENSCSEG00000019299	pdss1 (ENSCSEG00000019313)	abi1a (ENSCSEG00000019320)	acbd5a (ENSCSEG00000019337)	mastl (ENSCSEG00000019360)	YME1L1 (ENSCSEG00000019373)	ENSCSEG00000019389	fasn2 (ENSCSEG00000019391)	rdh12l (ENSCSEG00000019394)	ENSCSEG00000019399	ENSCSEG00000019405	ENSCSEG00000019406	zgc:111976 (ENSCSEG00000019408)	ENSCSEG00000019412	ralaa (ENSCSEG00000019417)	FBXL7 (ENSCSEG00000019422) #22	ENSCSEG00000019424	ENSCSEG00000019426	IMPA1 (ENSCSEG00000019428)	ENSCSEG00000019435	CDH7 (ENSCSEG00000019444)	ENSCSEG00000019451	ENSCSEG00000019458	cdv3 (ENSCSEG00000019476)	ENSCSEG00000019477	topbp1 (ENSCSEG00000019484)	DNAJC13 (ENSCSEG00000019506)	lztfl1 (ENSCSEG00000019570)	CCR9 (ENSCSEG00000019575)	gli3 (ENSCSEG00000019592)	prpf4bb (ENSCSEG00000019624)
Turbot	MODERN SPECIES	9	ENSSMAG00000029973	ENSSMAG00000017105	ENSSMAG00000017121	ENSSMAG00000017176	TMX3 (ENSSMAG00000017199)	ENSSMAG00000021797	ENSSMAG00000030856	ENSSMAG00000017227	ENSSMAG00000017236	CDH7 (ENSSMAG00000016214)	ENSSMAG00000019247	ENSSMAG00000019308	ENSSMAG00000019324	ENSSMAG00000019355	ENSSMAG00000025844	ENSSMAG00000019384 #22	ENSSMAG00000028100	ENSSMAG00000036267	ENSSMAG00000022942	ENSSMAG00000027078	ENOSF1 (ENSSMAG00000017269)	YES1 (ENSSMAG00000017288)	ADCYAP1 (ENSSMAG00000017346)	METTL4 (ENSSMAG00000017369)	SMCHD1 (ENSSMAG00000017428)	EMILIN2 (ENSSMAG00000017522)	LPIN2 (ENSSMAG00000017559)	MYOM1 (ENSSMAG00000017650)	myl12.1 (ENSSMAG00000029649)	ENSSMAG00000017809	ENSSMAG00000017822
Anabantaria	ANCESTRAL SPECIES	22	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Zig-zag eel	MODERN SPECIES	12	gad2 (ENSMAMG00000011415)	apbb1ip (ENSMAMG00000011402)	pdss1 (ENSMAMG00000011378)	abi1a (ENSMAMG00000011306)	acbd5a (ENSMAMG00000011292)	mastl (ENSMAMG00000011280)	YME1L1 (ENSMAMG00000011243)	ENSMAMG00000011225	ENSMAMG00000011215	rdh12l (ENSMAMG00000011183)	ca2 (ENSMAMG00000011166)	ENSMAMG00000011156	ENSMAMG00000011137	ENSMAMG00000011120	ENSMAMG00000011113	ENSMAMG00000026127 #22	ENSMAMG00000011079	ENSMAMG00000011058	IMPA1 (ENSMAMG00000027128)	CDH7 (ENSMAMG00000011015)	ENSMAMG00000010986	ENSMAMG00000010976	TMX3 (ENSMAMG00000010964)	ENSMAMG00000025237	ENSMAMG00000010914	ENSMAMG00000010901	ENSMAMG00000010895	ENSMAMG00000010865	ENSMAMG00000010771	topbp1 (ENSMAMG00000010610)	ENSMAMG00000010595
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Siamese fighting fish	MODERN SPECIES	15	apbb1ip (ENSBSLG00000010547)	pdss1 (ENSBSLG00000010502)	abi1a (ENSBSLG00000009898)	ENSBSLG00000009835	mastl (ENSBSLG00000009765)	YME1L1 (ENSBSLG00000009170)	ENSBSLG00000009093	fasn2 (ENSBSLG00000009080)	rdh12l (ENSBSLG00000009048)	ca2 (ENSBSLG00000009001)	ENSBSLG00000008971	ENSBSLG00000008932	ENSBSLG00000008486	ralaa (ENSBSLG00000008442)	zgc:111976 (ENSBSLG00000008406)	FBXL7 (ENSBSLG00000008384) #22	ENSBSLG00000008356	ENSBSLG00000008327	ENSBSLG00000008282	ENSBSLG00000008261	ENSBSLG00000019752	ENSBSLG00000019745	CDH7 (ENSBSLG00000019482)	ENSBSLG00000019416	TMX3 (ENSBSLG00000019360)	PXDC1 (ENSBSLG00000019354)	prpf4bb (ENSBSLG00000019079)	gli3 (ENSBSLG00000018803)	ENSBSLG00000018613	lztfl1 (ENSBSLG00000018601)	DNAJC13 (ENSBSLG00000018339)
Climbing perch	MODERN SPECIES	11	apbb1ip (ENSATEG00000023247)	pdss1 (ENSATEG00000023258)	abi1a (ENSATEG00000023271)	acbd5a (ENSATEG00000023279)	mastl (ENSATEG00000023293)	YME1L1 (ENSATEG00000023300)	ENSATEG00000023320	ENSATEG00000023328	rdh12l (ENSATEG00000023335)	ca2 (ENSATEG00000023344)	ENSATEG00000029809	ENSATEG00000025833	ENSATEG00000023372	ralaa (ENSATEG00000023391)	zgc:111976 (ENSATEG00000023426)	ENSATEG00000025214 #22	ENSATEG00000027197	ENSATEG00000023441	ENSATEG00000023457	ENSATEG00000023474	ENSATEG00000023480	ENSATEG00000023488	ENSATEG00000023483	CDH7 (ENSATEG00000023496)	ENSATEG00000023502	ENSATEG00000023505	ENSATEG00000000054	TMX3 (ENSATEG00000026110)	ENSATEG00000025856	ENSATEG00000000121	ENSATEG00000000138
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Pomacentridae	ANCESTRAL SPECIES	11	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Pomacentridae_A	ANCESTRAL SPECIES	8	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000166120.j.a	ENSGT00940000166120.j.b	ENSGT00940000164060.n	ENSGT00940000166120.i	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Amphiprion	ANCESTRAL SPECIES	7	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n.g	ENSGT00940000164060.n.h	ENSGT00940000166120.i.b	ENSGT00940000166120.j.a	ENSGT00940000166120.j.b	ENSGT00940000166120.i.a	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Clown anemonefish	MODERN SPECIES	3255																FBXL7 (ENSAOCG00000003130) #22	ENSAOCG00000003139	ENSAOCG00000003148	IMPA1 (ENSAOCG00000003151)	ENSAOCG00000003156	CDH7 (ENSAOCG00000003174)	ENSAOCG00000003189
Orange clownfish	MODERN SPECIES	14	mastl (ENSAPEG00000010257)	YME1L1 (ENSAPEG00000010274)	ENSAPEG00000010339	fasn2 (ENSAPEG00000010368)	fasn2 (ENSAPEG00000010425)	rdh12l (ENSAPEG00000010442)	rdh12l (ENSAPEG00000010460)	rdh12l (ENSAPEG00000010501)	ca2 (ENSAPEG00000010525)	ENSAPEG00000010551	ENSAPEG00000010563	RALYL (ENSAPEG00000010582)	ENSAPEG00000010623	ralaa (ENSAPEG00000010634)	zgc:111976 (ENSAPEG00000010653)	FBXL7 (ENSAPEG00000010800) #22	ENSAPEG00000010811	ENSAPEG00000010849	IMPA1 (ENSAPEG00000010891)	ENSAPEG00000010902	CDH7 (ENSAPEG00000010935)	ENSAPEG00000010996	ENSAPEG00000011111	DSEL (ENSAPEG00000011138)	ENSAPEG00000011157	TMX3 (ENSAPEG00000011181)	PXDC1 (ENSAPEG00000011245)	prpf4bb (ENSAPEG00000011281)	gli3 (ENSAPEG00000011295)	CCR9 (ENSAPEG00000011346)	lztfl1 (ENSAPEG00000011355)
Spiny chromis	MODERN SPECIES	169													ENSAPOG00000016246	ralaa (ENSAPOG00000016273)	zgc:111976 (ENSAPOG00000016323)	FBXL7 (ENSAPOG00000016334) #22	ENSAPOG00000016387	ENSAPOG00000016422	IMPA1 (ENSAPOG00000016442)	ENSAPOG00000016487	CDH7 (ENSAPOG00000016543)	ENSAPOG00000016558	DSEL (ENSAPOG00000016580)
Bicolor damselfish	MODERN SPECIES	1159													ENSSPAG00000009623	ralaa (ENSSPAG00000009640)	zgc:111976 (ENSSPAG00000009654)	FBXL7 (ENSSPAG00000009712) #22
Cichlidae	ANCESTRAL SPECIES	18	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Midas cichlid	MODERN SPECIES	147	pdss1 (ENSACIG00000002149)	abi1a (ENSACIG00000002131)	acbd5a (ENSACIG00000002067)	mastl (ENSACIG00000002036)	YME1L1 (ENSACIG00000001999)	ENSACIG00000001979	fasn2 (ENSACIG00000001959)	rdh12l (ENSACIG00000001911)	ca2 (ENSACIG00000001403)	ENSACIG00000001378	ENSACIG00000001349	ENSACIG00000001335	ENSACIG00000001208	ralaa (ENSACIG00000001178)	zgc:111976 (ENSACIG00000001094)	FBXL7 (ENSACIG00000001060) #22	ENSACIG00000001027	ENSACIG00000001004	IMPA1 (ENSACIG00000000981)	ENSACIG00000000754	CDH7 (ENSACIG00000000711)	ENSACIG00000000568	DSEL (ENSACIG00000000556)	tmx3b (ENSACIG00000000495)	PXDC1 (ENSACIG00000000481)	prpf4bb (ENSACIG00000000424)	gli3 (ENSACIG00000000367)	ENSACIG00000000357	CCR9 (ENSACIG00000000350)	lztfl1 (ENSACIG00000000163)	DNAJC13 (ENSACIG00000021872)
Pseudocrenilabrinae	ANCESTRAL SPECIES	20	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.y.b	ENSGT00390000017291.a.e.y.a	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	19	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.y.b	ENSGT00390000017291.a.e.z	ENSGT00390000017291.a.e.y.a	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e
Lyretail cichlid	MODERN SPECIES	325									rdh12l (ENSNBRG00000011325)	ca2 (ENSNBRG00000011355)	ENSNBRG00000011362	ENSNBRG00000011376	ENSNBRG00000011413	ralaa (ENSNBRG00000011524)	zgc:111976 (ENSNBRG00000011547)	FBXL7 (ENSNBRG00000011640) #22	ENSNBRG00000011649	ENSNBRG00000011678	ENSNBRG00000011705	IMPA1 (ENSNBRG00000011728)	ENSNBRG00000011742	CDH7 (ENSNBRG00000011764)	ENSNBRG00000011895	DSEL (ENSNBRG00000012662)	TMX3 (ENSNBRG00000012674)	PXDC1 (ENSNBRG00000012708)	prpf4bb (ENSNBRG00000012727)	gli3 (ENSNBRG00000012786)	CCR9 (ENSNBRG00000012822)	lztfl1 (ENSNBRG00000012841)	ENSNBRG00000012857
Haplochromini	ANCESTRAL SPECIES	21	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.y.b	ENSGT00390000017291.a.e.z	ENSGT00390000017291.a.e.y.a	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e
Burton s mouthbrooder	MODERN SPECIES	319													ENSHBUG00000014248	ralaa (ENSHBUG00000014274)	zgc:111976 (ENSHBUG00000014297)	FBXL7 (ENSHBUG00000014304) #22	ENSHBUG00000014334	ENSHBUG00000014355	ENSHBUG00000014386	ENSHBUG00000014412	IMPA1 (ENSHBUG00000014438)	ENSHBUG00000014462	CDH7 (ENSHBUG00000014487)	ENSHBUG00000014531	DSEL (ENSHBUG00000014558)	TMX3 (ENSHBUG00000001044)	PXDC1 (ENSHBUG00000014588)	prpf4bb (ENSHBUG00000014598)	gli3 (ENSHBUG00000014660)	CCR9 (ENSHBUG00000014667)	lztfl1 (ENSHBUG00000014716)
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.y.b	ENSGT00390000017291.a.e.z	ENSGT00390000017291.a.e.y.a	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT00940000178137	ENSGT01030000234667.a.a.b.e
P. nyererei	MODERN SPECIES	332	pdss1 (ENSPNYG00000003149)	abi1a (ENSPNYG00000003187)	acbd5a (ENSPNYG00000003214)	mastl (ENSPNYG00000003292)	YME1L1 (ENSPNYG00000003354)	ENSPNYG00000003420	fasn2 (ENSPNYG00000003462)	rdh12l (ENSPNYG00000003493)	ca2 (ENSPNYG00000003517)	ENSPNYG00000003540	ENSPNYG00000003548	ENSPNYG00000003581	ENSPNYG00000003594	ralaa (ENSPNYG00000003614)	zgc:111976 (ENSPNYG00000003638)	FBXL7 (ENSPNYG00000003691) #22	ENSPNYG00000003721
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e.y.b	ENSGT00390000017291.a.e.z	ENSGT00390000017291.a.e.y.a	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415
Eastern happy	MODERN SPECIES	21	ENSACLG00000008325	pdss1 (ENSACLG00000008306)	abi1a (ENSACLG00000008232)	acbd5a (ENSACLG00000008208)	mastl (ENSACLG00000008202)	YME1L1 (ENSACLG00000008169)	ENSACLG00000008152	fasn2 (ENSACLG00000008145)	rdh12l (ENSACLG00000007679)	ca2 (ENSACLG00000006999)	ENSACLG00000006989	ENSACLG00000006949	ENSACLG00000006464	ralaa (ENSACLG00000006454)	zgc:111976 (ENSACLG00000006440)	FBXL7 (ENSACLG00000006432) #22	ENSACLG00000006055	ENSACLG00000006022	ENSACLG00000006002	ENSACLG00000005976	IMPA1 (ENSACLG00000005942)	ENSACLG00000005916	ENSACLG00000005909	ENSACLG00000005898	CDH7 (ENSACLG00000005876)	ENSACLG00000005506	DSEL (ENSACLG00000005500)	ENSACLG00000005491	TMX3 (ENSACLG00000005103)	PXDC1 (ENSACLG00000005082)	prpf4bb (ENSACLG00000005056)
Zebra mbuna	MODERN SPECIES	1112	pdss1 (ENSMZEG00005018836)	abi1a (ENSMZEG00005018825)	acbd5a (ENSMZEG00005018817)	mastl (ENSMZEG00005018811)	YME1L1 (ENSMZEG00005018792)	ENSMZEG00005018783	fasn2 (ENSMZEG00005018775)	fasn2 (ENSMZEG00005018766)	rdh12l (ENSMZEG00005018758)	ca2 (ENSMZEG00005018756)	ENSMZEG00005018753	ENSMZEG00005018748	ENSMZEG00005018740	ralaa (ENSMZEG00005018734)	zgc:111976 (ENSMZEG00005018725)	FBXL7 (ENSMZEG00005018717) #22	ENSMZEG00005018709	ENSMZEG00005018703	ENSMZEG00005018698	ENSMZEG00005018693	IMPA1 (ENSMZEG00005018683)	ENSMZEG00005018674	CDH7 (ENSMZEG00005018669)	ENSMZEG00005018661	DSEL (ENSMZEG00005018655)	TMX3 (ENSMZEG00005018645)	PXDC1 (ENSMZEG00005018637)	prpf4bb (ENSMZEG00005018622)	gli3 (ENSMZEG00005018607)	CCR9 (ENSMZEG00005018603)	lztfl1 (ENSMZEG00005018594)
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Cyprinodontiformes	ANCESTRAL SPECIES	20	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Aplocheiloidei	ANCESTRAL SPECIES	18	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Mangrove rivulus	MODERN SPECIES	7	apbb1ip (ENSKMAG00000018509)	pdss1 (ENSKMAG00000018477)	abi1a (ENSKMAG00000018407)	acbd5a (ENSKMAG00000018390)	mastl (ENSKMAG00000018371)	YME1L1 (ENSKMAG00000018314)	ENSKMAG00000018293	fasn2 (ENSKMAG00000018264)	rdh12l (ENSKMAG00000018234)	ca2 (ENSKMAG00000018193)	ENSKMAG00000018173	ENSKMAG00000018155	ENSKMAG00000018139	ralaa (ENSKMAG00000018128)	zgc:111976 (ENSKMAG00000018098)	FBXL7 (ENSKMAG00000018078) #22	ENSKMAG00000018059	ENSKMAG00000018025	ENSKMAG00000017984	IMPA1 (ENSKMAG00000017940)	ENSKMAG00000017923	CDH7 (ENSKMAG00000017873)	ENSKMAG00000017834	DSEL (ENSKMAG00000017816)	TMX3 (ENSKMAG00000017790)	PXDC1 (ENSKMAG00000017737)	prpf4bb (ENSKMAG00000017707)	gli3 (ENSKMAG00000017607)	CCR9 (ENSKMAG00000017561)	lztfl1 (ENSKMAG00000017481)	DNAJC13 (ENSKMAG00000017138)
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015008995	ENSNFUG00015017096	ptbp2a (ENSNFUG00015015816)	hccsb (ENSNFUG00015015726)	ENSNFUG00015015715	ENSNFUG00015015698	upp1 (ENSNFUG00015015682)	ENSNFUG00015015674	ENSNFUG00015015667	ENSNFUG00015015662	ENSNFUG00015015654	ENSNFUG00015015635	ENSNFUG00015015631	CDK13 (ENSNFUG00015015415)	ralaa (ENSNFUG00015015384)	Nfu_g_1_003574 (ENSNFUG00015015345) #22	ENSNFUG00015015321	BST1 (ENSNFUG00015015308)	ENSNFUG00015015301	IMPA1 (ENSNFUG00015015286)	ENSNFUG00015015280	ENSNFUG00015015262	DSEL (ENSNFUG00015015248)	ENSNFUG00015015236	ENSNFUG00015015229	ENSNFUG00015015212	ENSNFUG00015015204	CABZ01108997.2 (ENSNFUG00015014801)	PXDC1B (ENSNFUG00015014754)	PRPF4BB (ENSNFUG00015014231)	puf60b (ENSNFUG00015013147)
Cyprinodontoidei	ANCESTRAL SPECIES	27	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Poeciliinae	ANCESTRAL SPECIES	20	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Poecilia	ANCESTRAL SPECIES	17	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
NAME_6	ANCESTRAL SPECIES	67	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n.n	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Amazon molly	MODERN SPECIES	434										ENSPFOG00000019414	ENSPFOG00000019412	RALYL (ENSPFOG00000022148)	ENSPFOG00000019409	ralaa (ENSPFOG00000019406)	zgc:111976 (ENSPFOG00000019403)	FBXL7 (ENSPFOG00000019401) #22	ENSPFOG00000019397	ENSPFOG00000019394	ENSPFOG00000019391	ENSPFOG00000019389	IMPA1 (ENSPFOG00000019384)	ENSPFOG00000019382	CDH7 (ENSPFOG00000019359)	ENSPFOG00000019330	DSEL (ENSPFOG00000020571)	ENSPFOG00000020570	DSEL (ENSPFOG00000020569)	TMX3 (ENSPFOG00000019317)	PXDC1 (ENSPFOG00000019311)	prpf4bb (ENSPFOG00000019305)	gli3 (ENSPFOG00000019294)
Sailfin molly	MODERN SPECIES	2069													ENSPLAG00000010388	ralaa (ENSPLAG00000010408)	zgc:111976 (ENSPLAG00000010413)	FBXL7 (ENSPLAG00000010429) #22
Guppy	MODERN SPECIES	451	apbb1ip (ENSPREG00000001004)	pdss1 (ENSPREG00000001015)	abi1a (ENSPREG00000001070)	ENSPREG00000001159	mastl (ENSPREG00000001177)	YME1L1 (ENSPREG00000001191)	ENSPREG00000001254	fasn2 (ENSPREG00000001289)	rdh12l (ENSPREG00000001300)	ca2 (ENSPREG00000001326)	ENSPREG00000001935	ENSPREG00000001956	ENSPREG00000002005	ralaa (ENSPREG00000002019)	zgc:111976 (ENSPREG00000002041)	FBXL7 (ENSPREG00000002066) #22	ENSPREG00000002086	IMPA1 (ENSPREG00000002142)	ENSPREG00000002162	CDH7 (ENSPREG00000002218)	ENSPREG00000002288	DSEL (ENSPREG00000002367)	fabp4a (ENSPREG00000002375)	TMX3 (ENSPREG00000002390)	PXDC1 (ENSPREG00000002419)	prpf4bb (ENSPREG00000002446)	ENSPREG00000002565	CCR9 (ENSPREG00000002599)	lztfl1 (ENSPREG00000002617)	DNAJC13 (ENSPREG00000002883)	topbp1 (ENSPREG00000005251)
Platyfish	MODERN SPECIES	13	abi1a (ENSXMAG00000008330)	acbd5a (ENSXMAG00000008340)	mastl (ENSXMAG00000008347)	YME1L1 (ENSXMAG00000008354)	ENSXMAG00000024610	fasn2 (ENSXMAG00000008371)	rdh12l (ENSXMAG00000008374)	ENSXMAG00000018368	ENSXMAG00000008378	ENSXMAG00000028998	ENSXMAG00000008396	ENSXMAG00000023556	ENSXMAG00000008398	ralaa (ENSXMAG00000026299)	zgc:111976 (ENSXMAG00000008412)	FBXL7 (ENSXMAG00000008416) #22	ENSXMAG00000008418	GPR158 (ENSXMAG00000008421)	PTCHD3 (ENSXMAG00000027875)	THNSL1 (ENSXMAG00000008429)	enkur (ENSXMAG00000023774)	ENSXMAG00000008432	ARHGAP21 (ENSXMAG00000008442)	apodb (ENSXMAG00000008455)	otos (ENSXMAG00000008456)	cops9 (ENSXMAG00000008457)	and1 (ENSXMAG00000008459)	ENSXMAG00000008460	ENSXMAG00000021257	tfr1b (ENSXMAG00000028064)	ENSXMAG00000003596
NAME_4	ANCESTRAL SPECIES	192													ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Sheepshead minnow	MODERN SPECIES	977													ENSCVAG00000016537	ralaa (ENSCVAG00000016551)	zgc:111976 (ENSCVAG00000016674)	FBXL7 (ENSCVAG00000016686) #22	ENSCVAG00000016707	ENSCVAG00000016733	ENSCVAG00000016738
Mummichog	MODERN SPECIES	617													ENSFHEG00000002908	ralaa (ENSFHEG00000002894)	zgc:111976 (ENSFHEG00000000085)	FBXL7 (ENSFHEG00000002869) #22	ENSFHEG00000002864	ENSFHEG00000002848	ENSFHEG00000002816	ENSFHEG00000002803	ENSFHEG00000002783
Oryzias	ANCESTRAL SPECIES	18	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n.k	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n.k	ENSGT00940000166120	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582	ENSGT00940000157001
Indian medaka	MODERN SPECIES	14	pdss1 (ENSOMEG00000001141)	abi1a (ENSOMEG00000001147)	ENSOMEG00000001149	acbd5a (ENSOMEG00000001151)	mastl (ENSOMEG00000001153)	YME1L1 (ENSOMEG00000001154)	ENSOMEG00000001156	fasn2 (ENSOMEG00000001159)	rdh12l (ENSOMEG00000001161)	ca2 (ENSOMEG00000001164)	ENSOMEG00000001166	ENSOMEG00000001170	ENSOMEG00000001174	ralaa (ENSOMEG00000001176)	zgc:111976 (ENSOMEG00000001184)	FBXL7 (ENSOMEG00000001188) #22	ENSOMEG00000001189	ENSOMEG00000001190	IMPA1 (ENSOMEG00000001192)	ENSOMEG00000001195	CDH7 (ENSOMEG00000001196)	ENSOMEG00000001200	ENSOMEG00000001202	DSEL (ENSOMEG00000001204)	ENSOMEG00000001206	ENSOMEG00000001210	TMX3 (ENSOMEG00000001215)	PXDC1 (ENSOMEG00000001218)	prpf4bb (ENSOMEG00000001222)	gli3 (ENSOMEG00000001241)	CCR9 (ENSOMEG00000001256)
Javanese ricefish	MODERN SPECIES	12	anxa13 (ENSOJAG00000021721)	myo3a (ENSOJAG00000021775)	gad2 (ENSOJAG00000021894)	apbb1ip (ENSOJAG00000022311)	abi1a (ENSOJAG00000022348)	acbd5a (ENSOJAG00000022401)	mastl (ENSOJAG00000022410)	YME1L1 (ENSOJAG00000022426)	fasn2 (ENSOJAG00000022647)	rdh12l (ENSOJAG00000022653)	ca2 (ENSOJAG00000003514)	ENSOJAG00000003538	ENSOJAG00000003565	ENSOJAG00000003597	ralaa (ENSOJAG00000003789)	FBXL7 (ENSOJAG00000003822) #22	ENSOJAG00000003842	ENSOJAG00000003900	ENSOJAG00000003920	CDH7 (ENSOJAG00000004037)	ENSOJAG00000004272	DSEL (ENSOJAG00000004293)	TMX3 (ENSOJAG00000004482)	PXDC1 (ENSOJAG00000005285)	prpf4bb (ENSOJAG00000005313)	gli3 (ENSOJAG00000005821)	CCR9 (ENSOJAG00000006125)	lztfl1 (ENSOJAG00000006134)	topbp1 (ENSOJAG00000006279)	ENSOJAG00000006957	cdv3 (ENSOJAG00000006983)
Oryzias_a	ANCESTRAL SPECIES	16	ENSGT00810000125439.A	ENSGT00940000156105.k.a	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b	ENSGT00940000156350.h	ENSGT00940000157002	ENSGT00550000074836.p	ENSGT00940000164060.m	ENSGT00940000164060.n.k	ENSGT00940000166120	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00760000120378	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Japanese Medaka HdrR	MODERN SPECIES	12	mastl (ENSORLG00000012841)	YME1L1 (ENSORLG00000012820)	pks1 (ENSORLG00000012793)	ENSORLG00000029622	fasn2 (ENSORLG00000012785)	rdh12l (ENSORLG00000012778)	ENSORLG00000026936	ENSORLG00000028135	ENSORLG00000012719	ENSORLG00000026870	ENSORLG00000024416	ENSORLG00000023346	ENSORLG00000026480	ralaa (ENSORLG00000012700)	zgc:111976 (ENSORLG00000023485)	FBXL7 (ENSORLG00000012685) #22	ENSORLG00000012675	ENSORLG00000012671	ENSORLG00000022217	ENSORLG00000029660	ENSORLG00000030203	ENSORLG00000012664	ENSORLG00000012644	CDH7 (ENSORLG00000012632)	ENSORLG00000012613	DSEL (ENSORLG00000012566)	ENSORLG00000026104	TMX3 (ENSORLG00000012557)	PXDC1 (ENSORLG00000030516)	prpf4bb (ENSORLG00000012529)	gli3 (ENSORLG00000012490)
Chinese medaka	MODERN SPECIES	31	myo3a (ENSOSIG00000011742)	gad2 (ENSOSIG00000012828)	apbb1ip (ENSOSIG00000015845)	ENSOSIG00000015846	acbd5a (ENSOSIG00000015847)	mastl (ENSOSIG00000015850)	YME1L1 (ENSOSIG00000015860)	ENSOSIG00000016572	fasn2 (ENSOSIG00000016573)	rdh12l (ENSOSIG00000016574)	ENSOSIG00000016578	ENSOSIG00000016581	ENSOSIG00000016601	ralaa (ENSOSIG00000017219)	zgc:111976 (ENSOSIG00000017222)	FBXL7 (ENSOSIG00000017224) #22	ENSOSIG00000017226	ENSOSIG00000017227	ENSOSIG00000017229	IMPA1 (ENSOSIG00000017232)	ENSOSIG00000017238	CDH7 (ENSOSIG00000017256)	ENSOSIG00000018139
Pinecone sodierfish	MODERN SPECIES	12	abi1a (ENSMMDG00005012388)	acbd5a (ENSMMDG00005012433)	mastl (ENSMMDG00005012439)	YME1L1 (ENSMMDG00005012489)	ENSMMDG00005015766	PTCHD3 (ENSMMDG00005015767)	fasn2 (ENSMMDG00005015769)	rdh12l (ENSMMDG00005015772)	ca2 (ENSMMDG00005015780)	ENSMMDG00005015790	ENSMMDG00005015792	RALYL (ENSMMDG00005015793)	ENSMMDG00005015795	ralaa (ENSMMDG00005015949)	zgc:111976 (ENSMMDG00005015954)	ENSMMDG00005015960 #22	ENSMMDG00005015975	ENSMMDG00005016195	ENSMMDG00005016198	IMPA1 (ENSMMDG00005016200)	ENSMMDG00005016204	CDH7 (ENSMMDG00005016223)	ENSMMDG00005016324	DSEL (ENSMMDG00005016328)	TMX3 (ENSMMDG00005016329)	PXDC1 (ENSMMDG00005016343)	prpf4bb (ENSMMDG00005016376)	gli3 (ENSMMDG00005017396)	CCR9 (ENSMMDG00005017409)	lztfl1 (ENSMMDG00005017413)	DNAJC13 (ENSMMDG00005017424)
Cod	MODERN SPECIES	15	mastl (ENSGMOG00000018075)	YME1L1 (ENSGMOG00000036384)	ENSGMOG00000026032	ENSGMOG00000036022	ENSGMOG00000024522	rdh12l (ENSGMOG00000018017)	ENSGMOG00000036829	ENSGMOG00000015756	ENSGMOG00000027268	ENSGMOG00000036068	ENSGMOG00000014617	ENSGMOG00000031702	ENSGMOG00000031034	ralaa (ENSGMOG00000009539)	zgc:111976 (ENSGMOG00000009505)	ENSGMOG00000035067 #22	ENSGMOG00000009482	ENSGMOG00000009410	ENSGMOG00000009306	ENSGMOG00000025232	ENSGMOG00000009286	ENSGMOG00000025758	ENSGMOG00000022802	ENSGMOG00000034537	ENSGMOG00000006776	ENSGMOG00000006767	ENSGMOG00000006746	ENSGMOG00000006713	ENSGMOG00000006700	ENSGMOG00000006691	ENSGMOG00000006633
Protacanthopterygii	ANCESTRAL SPECIES	49	ENSGT00940000159246	ENSGT00390000001029	ENSGT00940000156731.q.a	ENSGT00950000183149.A.e	ENSGT00950000183056.B.b.h	ENSGT00940000154502	ENSGT00940000155059	ENSGT00510000048348	ENSGT00530000063835.b	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209.g.a	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00930000151367.d.b	ENSGT00390000016415	ENSGT00390000017582
Salmoninae	ANCESTRAL SPECIES	87	ENSGT00940000159246.c	ENSGT00390000001029	ENSGT00940000156731.q.a	ENSGT00950000183149.A.e	ENSGT00950000183056.B.b.h	ENSGT00940000154502	ENSGT00940000155059	ENSGT00510000048348	ENSGT00530000063835.b	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852.a.a	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.f	ENSGT00940000154648.a.a.o.b.b	ENSGT00940000154634.d.a	ENSGT00940000157031.k.c	ENSGT00940000166818	ENSGT00390000006522.a.a.i	ENSGT00930000151022.a	ENSGT00390000009209.g.a	ENSGT00940000155562.l.b.c.b.b	ENSGT00390000009209.g.b	ENSGT00940000155562.l.b.c.b.a	ENSGT00940000155925.j.a.a	ENSGT01030000234667.a.a.b.e.c
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00940000159246.c	ENSGT00390000001029	ENSGT00940000156731.q.a	ENSGT00950000183149.A.e	ENSGT00950000183056.B.b.h	ENSGT00940000154502	ENSGT00940000155059	ENSGT00510000048348	ENSGT00530000063835.b	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852.a.a	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.f	ENSGT00940000154648.a.a.o.b.b	ENSGT00940000154634.d.a	ENSGT00940000157031.k.c	ENSGT00940000166818	ENSGT00390000006522.a.a.i	ENSGT00930000151022.a	ENSGT00390000009209.g.a	ENSGT00940000155562.l.b.c.b.a	ENSGT00940000155925.j.a.a	ENSGT01030000234667.a.a.b.e.c	ENSGT00930000151367.d.b	ENSGT00390000016415.c
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00940000159246.c	ENSGT00390000001029	ENSGT00940000156731.q.a	ENSGT00950000183149.A.e	ENSGT00950000183056.B.b.h	ENSGT00940000154502	ENSGT00940000155059	ENSGT00510000048348	ENSGT00530000063835.b	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852.a.a	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.f	ENSGT00940000154648.a.a.o.b.b	ENSGT00940000154634.d.a	ENSGT00940000157031.k.c	ENSGT00940000166818	ENSGT00390000006522.a.a.i	ENSGT00930000151022.a	ENSGT00390000009209.g.a	ENSGT00940000155562.l.b.c.b.a	ENSGT00940000155925.j.a.a	ENSGT01030000234667.a.a.b.e.c	ENSGT00930000151367.d.b	ENSGT00390000016415.c
Rainbow trout	MODERN SPECIES	6	chchd7 (ENSOMYG00000007358)	sdr16c5b (ENSOMYG00000007422)	penkb (ENSOMYG00000007450)	FAM110B (ENSOMYG00000052841)	ENSOMYG00000052251	SDCBP (ENSOMYG00000007504)	NSMAF (ENSOMYG00000008543)	ENSOMYG00000009137	ENSOMYG00000009151	ca2 (ENSOMYG00000009194)	ENSOMYG00000049201	ENSOMYG00000009291	ENSOMYG00000009405	ralaa (ENSOMYG00000009443)	zgc:111976 (ENSOMYG00000009551)	ENSOMYG00000009608 #22	ENSOMYG00000076263	ENSOMYG00000009661	ENSOMYG00000048103	ENSOMYG00000059118	ENSOMYG00000051469	ENSOMYG00000009710	ENSOMYG00000009749	CDH7 (ENSOMYG00000009820)	ENSOMYG00000009932	ENSOMYG00000009961	TMX3 (ENSOMYG00000010402)	ENSOMYG00000057533	ENSOMYG00000011817	ENSOMYG00000012897	ENSOMYG00000012931
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT00940000159246.c	ENSGT00390000001029	ENSGT00940000156731.q.a	ENSGT00950000183149.A.e	ENSGT00950000183056.B.b.h	ENSGT00940000154502	ENSGT00940000155059	ENSGT00510000048348	ENSGT00530000063835.b	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852.a.a	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.f	ENSGT00940000154648.a.a.o.b.b	ENSGT00940000154634.d.a	ENSGT00940000157031.k.c	ENSGT00940000166818	ENSGT00390000006522.a.a.i	ENSGT00930000151022.a	ENSGT00390000009209.g.a	ENSGT00940000155562.l.b.c.b.b	ENSGT00390000009209.g.b	ENSGT00940000155562.l.b.c.b.a	ENSGT00940000155925.j.a.a	ENSGT01030000234667.a.a.b.e.c
Chinook salmon	DUPLICATION
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	21	plag1 (ENSOTSG00005003092)	chchd7 (ENSOTSG00005003197)	sdr16c5b (ENSOTSG00005003199)	penkb (ENSOTSG00005003202)	fam110b (ENSOTSG00005003206)	SDCBP (ENSOTSG00005003208)	NSMAF (ENSOTSG00005003237)	ENSOTSG00005003421	ENSOTSG00005003423	ENSOTSG00005003428	ENSOTSG00005003429	ENSOTSG00005003433	ENSOTSG00005003437	ralaa (ENSOTSG00005003441)	zgc:111976 (ENSOTSG00005003444)	ENSOTSG00005003447 #22	ENSOTSG00005003451	ENSOTSG00005003454	ENSOTSG00005003455	ENSOTSG00005003456	ENSOTSG00005003458	CDH7 (ENSOTSG00005003463)	ENSOTSG00005004976	ENSOTSG00005004978	TMX3 (ENSOTSG00005005001)	PXDC1 (ENSOTSG00005006576)	prpf4bb (ENSOTSG00005006584)	gli3 (ENSOTSG00005008126)	CCR9 (ENSOTSG00005008128)	ENSOTSG00005008129	lztfl1 (ENSOTSG00005008131)
Chinook salmon	MODERN SPECIES	2903	mos (ENSOTSG00005023456)	plag1 (ENSOTSG00005023438)	chchd7 (ENSOTSG00005023435)	sdr16c5b (ENSOTSG00005023434)	penkb (ENSOTSG00005023432)	fam110b (ENSOTSG00005023431)	SDCBP (ENSOTSG00005023429)	NSMAF (ENSOTSG00005023191)	ENSOTSG00005023182	ENSOTSG00005023180	ENSOTSG00005023178	ENSOTSG00005023176	ENSOTSG00005023174	ralaa (ENSOTSG00005023172)	zgc:111976 (ENSOTSG00005023171)	ENSOTSG00005023170 #22	ENSOTSG00005023169	ENSOTSG00005023168	ENSOTSG00005023167	ENSOTSG00005023166	ENSOTSG00005023165	CDH7 (ENSOTSG00005023160)	ENSOTSG00005023159	DSEL (ENSOTSG00005023158)	TMX3 (ENSOTSG00005022179)	PXDC1 (ENSOTSG00005030293)	prpf4bb (ENSOTSG00005029874)	gli3 (ENSOTSG00005029832)	CCR9 (ENSOTSG00005029827)	vsnl1a (ENSOTSG00005029825)	sf3b6 (ENSOTSG00005029822)
Chinook salmon	MODERN SPECIES	2903	RPS20 (ENSOTSG00005027090)	mos (ENSOTSG00005027092)	plag1 (ENSOTSG00005027093)	chchd7 (ENSOTSG00005027094)	sdr16c5b (ENSOTSG00005027095)	penkb (ENSOTSG00005027096)	fam110b (ENSOTSG00005027097)	SDCBP (ENSOTSG00005027098)	NSMAF (ENSOTSG00005027103)	ENSOTSG00005027289	ENSOTSG00005027290	ENSOTSG00005027292	ENSOTSG00005027295	ENSOTSG00005027298	zgc:111976 (ENSOTSG00005027300)	ENSOTSG00005027301 #22	ENSOTSG00005027303	ENSOTSG00005027304	ENSOTSG00005027305	ENSOTSG00005027306	ENSOTSG00005027308	CDH7 (ENSOTSG00005027315)	ENSOTSG00005027808	ENSOTSG00005027809	TMX3 (ENSOTSG00005027815)	PXDC1 (ENSOTSG00005029196)	prpf4bb (ENSOTSG00005029206)	gli3 (ENSOTSG00005029970)	CCR9 (ENSOTSG00005029972)	banp (ENSOTSG00005029973)	FBXO31 (ENSOTSG00005029975)
Coho salmon	MODERN SPECIES	2	mos (ENSOKIG00005005960)	plag1 (ENSOKIG00005005955)	chchd7 (ENSOKIG00005005947)	sdr16c5b (ENSOKIG00005005937)	penkb (ENSOKIG00005005930)	FAM110B (ENSOKIG00005005922)	SDCBP (ENSOKIG00005005907)	NSMAF (ENSOKIG00005005474)	ENSOKIG00005005404	ENSOKIG00005005389	ENSOKIG00005005337	ENSOKIG00005005328	ENSOKIG00005005316	ENSOKIG00005005297	ralaa (ENSOKIG00005005278)	ENSOKIG00005005237 #22	ENSOKIG00005005213	ENSOKIG00005005193	ENSOKIG00005005176	ENSOKIG00005005117	ENSOKIG00005005089	CDH7 (ENSOKIG00005004515)	ENSOKIG00005004389	DSEL (ENSOKIG00005004376)	TMX3 (ENSOKIG00005004211)	PRPF4B (ENSOKIG00005003699)	gli3 (ENSOKIG00005003639)	ENSOKIG00005003608	ENSOKIG00005003601	LZTFL1 (ENSOKIG00005003574)	DNAJC13 (ENSOKIG00005003460)
Salmo	ANCESTRAL SPECIES	34	ENSGT00940000159246.c	ENSGT00390000001029	ENSGT00940000156731.q.a	ENSGT00950000183149.A.e	ENSGT00950000183056.B.b.h	ENSGT00940000154502	ENSGT00940000155059	ENSGT00510000048348	ENSGT00530000063835.b	ENSGT00940000167726	ENSGT00390000015564	ENSGT00940000164239.b.b	ENSGT00940000157852.a.a	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT01010000230169	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT01100000263516.a.b.b.b.b.a.a.b.a.a.a.a.a.a.f	ENSGT00940000154648.a.a.o.b.b	ENSGT00940000154634.d.a	ENSGT00940000157031.k.c	ENSGT00940000166818	ENSGT00390000006522.a.a.i	ENSGT00930000151022.a	ENSGT00390000009209.g.a	ENSGT00940000155562.l.b.c.a	ENSGT00940000155925.j.a.a	ENSGT01030000234667.a.a.b.e.c	ENSGT00930000151367.d.b
Atlantic salmon	MODERN SPECIES	21	chchd7 (ENSSSAG00000073145)	sdr16c5 (ENSSSAG00000073141)	penkb (ENSSSAG00000073140)	fam110b (ENSSSAG00000112643)	SDCB1 (ENSSSAG00000073132)	nsmaf (ENSSSAG00000072140)	ENSSSAG00000072100	ENSSSAG00000072090	ENSSSAG00000093351	ENSSSAG00000072081	ENSSSAG00000109415	ENSSSAG00000107372	ENSSSAG00000071869	ralaa (ENSSSAG00000071859)	zgc:111976 (ENSSSAG00000091886)	ENSSSAG00000071845 #22	ENSSSAG00000071843	ENSSSAG00000109881	ENSSSAG00000071836	ENSSSAG00000071831	ENSSSAG00000088431	ENSSSAG00000117511	ENSSSAG00000071830	ENSSSAG00000071816	ENSSSAG00000071284	ENSSSAG00000071258	ENSSSAG00000071215	ENSSSAG00000115484	ENSSSAG00000070531	ENSSSAG00000070213	ENSSSAG00000072881
River trout	MODERN SPECIES	36	chchd7 (ENSSTUG00000022662)	sdr16c5b (ENSSTUG00000022671)	penkb (ENSSTUG00000022693)	fam110b (ENSSTUG00000022705)	SDCBP (ENSSTUG00000022708)	NSMAF (ENSSTUG00000022767)	ENSSTUG00000023220	rbbp8 (ENSSTUG00000023253)	ENSSTUG00000023263	ENSSTUG00000023281	ENSSTUG00000023286	ENSSTUG00000023295	ENSSTUG00000023347	ralaa (ENSSTUG00000023452)	zgc:111976 (ENSSTUG00000023494)	ENSSTUG00000023511 #22	ENSSTUG00000023516	ENSSTUG00000023521	ENSSTUG00000023528	ENSSTUG00000023555	ENSSTUG00000023579	ENSSTUG00000023609	CDH7 (ENSSTUG00000023662)	ENSSTUG00000024337	DSEL (ENSSTUG00000024364)	TMX3 (ENSSTUG00000024373)	PXDC1 (ENSSTUG00000024473)	prpf4bb (ENSSTUG00000024518)	gli3 (ENSSTUG00000025961)	CCR9 (ENSSTUG00000026324)	ENSSTUG00000026332
Huchen	MODERN SPECIES	215											ENSHHUG00000021804	ENSHHUG00000021808	ENSHHUG00000021821	ralaa (ENSHHUG00000021831)	zgc:111976 (ENSHHUG00000021861)	ENSHHUG00000021892 #22	ENSHHUG00000021899	ENSHHUG00000021911	ENSHHUG00000021923	ENSHHUG00000021948	ENSHHUG00000021971	impa1 (ENSHHUG00000022004)	ENSHHUG00000022016	CDH7 (ENSHHUG00000022043)	ENSHHUG00000022847	DSEL (ENSHHUG00000022857)	ENSHHUG00000022861	ENSHHUG00000022862	ENSHHUG00000022932	tubb2 (ENSHHUG00000022960)	ENSHHUG00000022970
Northern pike	MODERN SPECIES	20	chchd7 (ENSELUG00000021526)	sdr16c5b (ENSELUG00000021485)	penkb (ENSELUG00000021396)	ENSELUG00000029765	fam110b (ENSELUG00000021390)	SDCBP (ENSELUG00000021379)	NSMAF (ENSELUG00000021357)	ENSELUG00000021255	rbbp8 (ENSELUG00000021207)	ENSELUG00000021127	ENSELUG00000034133	ENSELUG00000001702	ENSELUG00000008879	ralaa (ENSELUG00000028478)	zgc:111976 (ENSELUG00000008926)	ENSELUG00000008975 #22	ENSELUG00000033743	ENSELUG00000030081	ENSELUG00000034504	IMPA1 (ENSELUG00000001369)	CDH7 (ENSELUG00000008843)	ENSELUG00000008883	DSEL (ENSELUG00000005084)	TMX3 (ENSELUG00000005107)	PXDC1 (ENSELUG00000025131)	prpf4bb (ENSELUG00000005167)	ENSELUG00000027014	ENSELUG00000032420	gli3 (ENSELUG00000005226)	CCR9 (ENSELUG00000005254)	ENSELUG00000005275
Otomorpha	ANCESTRAL SPECIES	349												ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00940000155925	ENSGT01030000234667.a.a.b.e	ENSGT00390000016415	ENSGT00390000017582
Otophysi	ANCESTRAL SPECIES	462													ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22
Characiphysae	ANCESTRAL SPECIES										ENSGT00940000154926	ENSGT00950000183214.a.a.a.b	ENSGT00940000157169.c	ENSGT01090000259987.a.b.d.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000005826.b.e	ENSGT00940000154456.hb.b	ENSGT00940000160536	ENSGT00940000154014.a	ENSGT00940000158294.g.a	ENSGT00940000160556	ENSGT01090000260052.b.b.b	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00940000154835.C.eb.a	ENSGT00990000204292	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000156394	ENSGT00950000182977.B.b.a.d.d
Channel catfish	MODERN SPECIES		nrn1 (ENSIPUG00000000378)	fars2 (ENSIPUG00000000375)	lyrm4 (ENSIPUG00000000370)	ENSIPUG00000000365	cyb5a (ENSIPUG00000000358)	c1h18orf63 (ENSIPUG00000000348)	fam69c (ENSIPUG00000000344)	ENSIPUG00000000313	cul2 (ENSIPUG00000000281)	PARD3 (ENSIPUG00000000235)	nrp1a (ENSIPUG00000000213)	itgb1 (ENSIPUG00000000200)	cdk13 (ENSIPUG00000000176)	RALA (ENSIPUG00000000156)	zgc:111976 (ENSIPUG00000000152)	ENSIPUG00000024987 #22	napga (ENSIPUG00000024985)	PIEZO2 (ENSIPUG00000024974)	impa2 (ENSIPUG00000024972)	STK17A (ENSIPUG00000024971)	HECW1 (ENSIPUG00000024962)	Vstm2a (ENSIPUG00000024957)	phax (ENSIPUG00000024948)	ENSIPUG00000024941	ENSIPUG00000024940	ENSIPUG00000024939	vopp1 (ENSIPUG00000024937)	lancl2 (ENSIPUG00000024936)	TGFBR1 (ENSIPUG00000024933)	ENSIPUG00000024930	reck (ENSIPUG00000024916)
Characiphysae_b	ANCESTRAL SPECIES	170				ENSGT00940000164239.b.b	ENSGT00940000156907.p.a.b	ENSGT00390000005651.m	ENSGT00940000154635.a	ENSGT00950000182992.a.b.b	ENSGT00940000154926	ENSGT00950000183214.a.a.a.b	ENSGT00940000157169.c	ENSGT01090000259987.a.b.d.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000005826.b.e	ENSGT00940000154456.hb.b	ENSGT00940000160536	ENSGT00940000154014.a	ENSGT00940000158294.g.a	ENSGT00940000160556	ENSGT01090000260052.b.b.b	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000156394	ENSGT00950000182977.B.b.a.d.d	ENSGT00390000018540	ENSGT00940000158212.A
Characoidei	ANCESTRAL SPECIES	190		ENSGT01050000244939.a.a.a.d	ENSGT00390000018605	ENSGT00940000157533	ENSGT00940000164239.b.b	ENSGT00390000005651.m	ENSGT00940000154635.a	ENSGT00950000182992.a.b.b	ENSGT00940000154926	ENSGT00950000183214.a.a.a.b	ENSGT00940000157169.c	ENSGT01090000259987.a.b.d.b.b	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22	ENSGT00390000005826.b.e	ENSGT00940000154456.hb.b	ENSGT00940000160536	ENSGT00940000154014.a	ENSGT00940000158294.g.a	ENSGT00940000160556	ENSGT01090000260052.b.b.b	ENSGT00390000015821	ENSGT00530000063186.b.a	ENSGT00940000156394	ENSGT00950000182977.B.b.a.d.d	ENSGT00390000018540	ENSGT00940000158212.A
Red-bellied piranha	MODERN SPECIES	4	ly86 (ENSPNAG00000000477)	RREB1 (ENSPNAG00000000486)	ENSPNAG00000000488	ENSPNAG00000000498	snx16 (ENSPNAG00000000505)	ENSPNAG00000007843	WWP1 (ENSPNAG00000007866)	rmdn1 (ENSPNAG00000007882)	CUL2 (ENSPNAG00000007914)	ENSPNAG00000000563	nrp1a (ENSPNAG00000008003)	itgb1a (ENSPNAG00000008014)	ENSPNAG00000000604	ralaa (ENSPNAG00000008039)	zgc:111976 (ENSPNAG00000008056)	ENSPNAG00000000630 #22	napga (ENSPNAG00000000651)	PIEZO2 (ENSPNAG00000004752)	impa2 (ENSPNAG00000008175)	stk17a (ENSPNAG00000008193)	HECW1 (ENSPNAG00000000849)	vstm2a (ENSPNAG00000008283)	ENSPNAG00000000859	ENSPNAG00000008295	ENSPNAG00000008304	VOPP1 (ENSPNAG00000000880)	lancl2 (ENSPNAG00000000888)
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000041273	ENSAMXG00000034147	snx16 (ENSAMXG00000029820)	ENSAMXG00000034076	WWP1 (ENSAMXG00000019034)	ENSAMXG00000040335	rmdn1 (ENSAMXG00000019036)	CUL2 (ENSAMXG00000019037)	ENSAMXG00000019040	ENSAMXG00000038857	nrp1a (ENSAMXG00000019057)	itgb1a (ENSAMXG00000019081)	ENSAMXG00000019085	ralaa (ENSAMXG00000019088)	zgc:111976 (ENSAMXG00000019091)	ENSAMXG00000019094 #22	napga (ENSAMXG00000019096)	PIEZO2 (ENSAMXG00000019099)	impa2 (ENSAMXG00000038218)	ENSAMXG00000038949	stk17a (ENSAMXG00000031167)	HECW1 (ENSAMXG00000019127)	vstm2a (ENSAMXG00000042369)	ENSAMXG00000032762	ENSAMXG00000000824	ENSAMXG00000029988	VOPP1 (ENSAMXG00000042250)	lancl2 (ENSAMXG00000041138)	tgfbr1b (ENSAMXG00000000806)	ENSAMXG00000039588	RECK (ENSAMXG00000000796)
Electric eel	MODERN SPECIES	93											nrp1a (ENSEEEG00000009063)	itgb1a (ENSEEEG00000007730)	ENSEEEG00000007681	ralaa (ENSEEEG00000007673)	zgc:111976 (ENSEEEG00000007671)	ENSEEEG00000007670 #22	napga (ENSEEEG00000007663)	PIEZO2 (ENSEEEG00000007658)	impa2 (ENSEEEG00000007652)	stk17a (ENSEEEG00000007648)	ENSEEEG00000007646	HECW1 (ENSEEEG00000007644)	vstm2a (ENSEEEG00000007643)	ENSEEEG00000007642	ENSEEEG00000007640	ENSEEEG00000007639	lancl2 (ENSEEEG00000007637)	tuft1a (ENSEEEG00000007636)	zgc:123238 (ENSEEEG00000007634)	ENSEEEG00000007632	aqp10a (ENSEEEG00000007606)
Cyprinoidei	ANCESTRAL SPECIES	63	ENSGT00940000154607.b.b	ENSGT00940000154621.a.b.b.b	ENSGT00940000155106	ENSGT00390000014167	ENSGT00940000164076.b	ENSGT01090000260052.b.b.b	ENSGT00940000160556	ENSGT00940000158294.g.a	ENSGT00940000154014.a	ENSGT00940000160536	ENSGT00940000154456.hb.b	ENSGT00390000005826.b.e	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00940000158009.a #22
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	373										ENSGT00940000154456.hb.b.b	ENSGT00390000005826.b.e	ENSGT00940000157852.d	ENSGT00940000157852.c	ENSGT00940000155142.ob	ENSGT00660000095569.c	ENSGT00940000158009.a.e #22	ENSGT00940000158009.a.f #22	ENSGT01090000259987.a.b.d.b.b	ENSGT00940000157169.c.c.a	ENSGT00950000183214.a.a.a.b.b	ENSGT00940000154926.a	ENSGT00940000157533.r.b	ENSGT00390000018605.a	ENSGT01050000244939.a.a.a.d.d.b	ENSGT00390000018596.A.b.d	ENSGT00940000170651.a	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00940000163747	ENSGT00940000157289.a.k.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	43	zgc:111976 (ENSCARG00000052629)	ralaa (ENSCARG00000052615)	ENSCARG00000052206	ENSCARG00000050417	impa2 (ENSCARG00000050306)	stk17a (ENSCARG00000050248)	HECW1 (ENSCARG00000049605)	ENSCARG00000049491	ENSCARG00000049470 #22	itgb1a (ENSCARG00000048688)	nrp1a (ENSCARG00000048593)	impa2 (ENSCARG00000048437)	ENSCARG00000046453	ralaa (ENSCARG00000046312)	zgc:111976 (ENSCARG00000046163)	ENSCARG00000046139 #22	itgb1a (ENSCARG00000041204)	nrp1a (ENSCARG00000039385)	ENSCARG00000027175	CUL2 (ENSCARG00000042594)	ENSCARG00000042531	RREB1 (ENSCARG00000042498)	ly86 (ENSCARG00000042482)	F13A1 (ENSCARG00000042427)	ENSCARG00000042413	ENSCARG00000042370	ENSCARG00000042358	ENSCARG00000042347	dipk1c (ENSCARG00000042333)	cyb5a (ENSCARG00000042308)	ENSCARG00000042286
Goldfish	MODERN SPECIES	43	ENSCARG00000053178	DNAJC13 (ENSCARG00000053079)	ENSCARG00000053050	DSEL (ENSCARG00000053042)	TMX3 (ENSCARG00000052978)	CDH7 (ENSCARG00000052719)	ENSCARG00000052694	zgc:111976 (ENSCARG00000052629)	ralaa (ENSCARG00000052615)	ENSCARG00000052206	ENSCARG00000050417	impa2 (ENSCARG00000050306)	stk17a (ENSCARG00000050248)	HECW1 (ENSCARG00000049605)	ENSCARG00000049491	ENSCARG00000049470 #22	itgb1a (ENSCARG00000048688)	nrp1a (ENSCARG00000048593)	impa2 (ENSCARG00000048437)	ENSCARG00000046453	ralaa (ENSCARG00000046312)	zgc:111976 (ENSCARG00000046163)	ENSCARG00000046139 #22	itgb1a (ENSCARG00000041204)	nrp1a (ENSCARG00000039385)	ENSCARG00000027175	CUL2 (ENSCARG00000042594)	ENSCARG00000042531	RREB1 (ENSCARG00000042498)	ly86 (ENSCARG00000042482)	F13A1 (ENSCARG00000042427)
Cyprininae_a	ANCESTRAL SPECIES	312	ENSGT00390000017582	ENSGT00940000169918.i	ENSGT00940000156394.j	ENSGT00530000063186.b.a	ENSGT00390000015821.n.a.b	ENSGT00940000164076.b	ENSGT01090000260052.b.b.b	ENSGT00940000160556.a.b	ENSGT00940000158294.g.a.a	ENSGT00940000154014.a.a.b	ENSGT00940000160536	ENSGT00940000154456.hb.b.a	ENSGT00940000157852.c	ENSGT00940000155142.ob	ENSGT00660000095569.c	ENSGT00940000158009.a.e #22	ENSGT00940000157169.c.c.b	ENSGT00950000183214.a.a.a.b.a	ENSGT00940000154926.b	ENSGT01100000263533.b.b.a.a.b.a.a	ENSGT00940000157533.r.a	ENSGT00390000018605.b	ENSGT01050000244939.a.a.a.d.d.a	ENSGT00390000018596.A.b.c	ENSGT00940000170651.b	ENSGT00940000163723.A.e.h	ENSGT00940000163723.A.f.b.a.b
Common carp reference	MODERN SPECIES	14	ENSCCRG00000030975	tgfbr1b (ENSCCRG00000062889)	lancl2 (ENSCCRG00000004580)	ENSCCRG00000057333	ENSCCRG00000011659	ENSCCRG00000003074	vstm2a (ENSCCRG00000025109)	ENSCCRG00000068885	ENSCCRG00000058825	stk17a (ENSCCRG00000030463)	impa2 (ENSCCRG00000030576)	ENSCCRG00000035868	ENSCCRG00000066968	ralaa (ENSCCRG00000064422)	zgc:111976 (ENSCCRG00000034506)	ENSCCRG00000052587 #22	itgb1a (ENSCCRG00000038069)	nrp1a (ENSCCRG00000043334)	ENSCCRG00000074624	CUL2 (ENSCCRG00000024823)	ENSCCRG00000075029	RREB1 (ENSCCRG00000007310)	ly86 (ENSCCRG00000007339)	F13A1 (ENSCCRG00000056855)	ENSCCRG00000069094	tubb6 (ENSCCRG00000064824)	ENSCCRG00000008996	ENSCCRG00000079528	dipk1c (ENSCCRG00000049725)	ENSCCRG00000009021	LYRM4 (ENSCCRG00000032618)
Golden-line barbel	MODERN SPECIES	1017								ENSSGRG00000017240	stk17a (ENSSGRG00000017114)	impa2 (ENSSGRG00000017113)	PIEZO2 (ENSSGRG00000017108)	napga (ENSSGRG00000016892)	ENSSGRG00000016886	ralaa (ENSSGRG00000016879)	zgc:111976 (ENSSGRG00000016878)	ENSSGRG00000016875 #22	itgb1a (ENSSGRG00000016646)	nrp1a (ENSSGRG00000015778)
Cyprininae	ANCESTRAL SPECIES	373									ENSGT00940000154456.hb.b.b	ENSGT00390000005826.b.e	ENSGT00940000157852.d	ENSGT00940000157852.c	ENSGT00940000155142.ob	ENSGT00660000095569.c	ENSGT00940000158009.a.e #22	ENSGT00940000158009.a.f #22	ENSGT01090000259987.a.b.d.b.b	ENSGT00940000157169.c.c.a	ENSGT00950000183214.a.a.a.b.b	ENSGT00940000154926.a	ENSGT00940000157533.r.b	ENSGT00390000018605.a	ENSGT01050000244939.a.a.a.d.d.b	ENSGT00390000018596.A.b.d	ENSGT00940000170651.a	ENSGT00390000006452.a	ENSGT00390000007627	ENSGT00940000156770	ENSGT00940000163747	ENSGT00940000157289.a.k.a	ENSGT00940000158071.b
Cyprininae_a	ANCESTRAL SPECIES	362													ENSGT00940000154456.hb.b.b	ENSGT00390000005826.b.e	ENSGT00940000157852.d	ENSGT00940000158009.a.f #22	ENSGT01090000259987.a.b.d.b.b	ENSGT00940000157169.c.d	ENSGT00940000157169.c.c.a	ENSGT00950000183214.a.a.a.b.b	ENSGT00940000154926.a	ENSGT00940000157533.r.b	ENSGT00390000018605.a	ENSGT01050000244939.a.a.a.d.d.b	ENSGT00390000018596.A.b.d	ENSGT00940000170651.a	ENSGT00390000006452.a.a	ENSGT00940000156770	ENSGT00390000014167.n	ENSGT00940000163747	ENSGT00940000157289.a.k.a
Common carp reference	MODERN SPECIES	40	ENSCCRG00000075201	ENSCCRG00000069390	vstm2a (ENSCCRG00000046136)	ENSCCRG00000055578	ENSCCRG00000077907	ENSCCRG00000056024	ENSCCRG00000067580	stk17a (ENSCCRG00000016420)	ENSCCRG00000016402	napga (ENSCCRG00000057803)	ENSCCRG00000035882	ENSCCRG00000068886	ralaa (ENSCCRG00000032893)	ENSCCRG00000002832	ENSCCRG00000071526	ENSCCRG00000075530 #22	itgb1a (ENSCCRG00000033687)	ENSCCRG00000042050	nrp1a (ENSCCRG00000047859)	ENSCCRG00000046767	CUL2 (ENSCCRG00000024985)	ENSCCRG00000081627	ENSCCRG00000007370	tubb6 (ENSCCRG00000008986)	dipk1c (ENSCCRG00000056852)	ENSCCRG00000022488	ENSCCRG00000022497	ENSCCRG00000055351	LYRM4 (ENSCCRG00000078025)	fars2 (ENSCCRG00000076988)	nrn1a (ENSCCRG00000058034)
Golden-line barbel	MODERN SPECIES	1109													ENSSGRG00000018834	napga (ENSSGRG00000018832)	ralaa (ENSSGRG00000018817)	ENSSGRG00000018809 #22	itgb1a (ENSSGRG00000017204)	nrp1a (ENSSGRG00000017047)
Goldfish	MODERN SPECIES	16	ENSCARG00000026283	ENSCARG00000026264	zic4 (ENSCARG00000026258)	zic1 (ENSCARG00000026254)	ENSCARG00000026251	AGTR1 (ENSCARG00000026248)	cpb1 (ENSCARG00000026176)	fzd8a (ENSCARG00000026141)	ENSCARG00000026135	CCNY (ENSCARG00000042518)	klf6a (ENSCARG00000042452)	napga (ENSCARG00000040848)	ENSCARG00000040591	ralaa (ENSCARG00000040544)	ENSCARG00000040528	ENSCARG00000040506 #22	itgb1a (ENSCARG00000036505)	nrp1a (ENSCARG00000032106)	ENSCARG00000031933	ENSCARG00000021576	CUL2 (ENSCARG00000021204)	RREB1 (ENSCARG00000021180)	ly86 (ENSCARG00000021170)	F13A1 (ENSCARG00000021025)	ENSCARG00000021009	ENSCARG00000021000	dipk1c (ENSCARG00000020989)	ENSCARG00000020977	cyb5a (ENSCARG00000020964)	ENSCARG00000020955	LYRM4 (ENSCARG00000020936)
Zebrafish	MODERN SPECIES	16	tgfbr1b (ENSDARG00000042259)	lancl2 (ENSDARG00000045465)	ENSDARG00000076373	ENSDARG00000077245	ENSDARG00000059410	ENSDARG00000026417	vstm2a (ENSDARG00000021909)	HECW1 (ENSDARG00000100958)	stk17a (ENSDARG00000074715)	impa2 (ENSDARG00000059411)	PIEZO2 (ENSDARG00000076005)	napga (ENSDARG00000006617)	ENSDARG00000076791	ralaa (ENSDARG00000045463)	zgc:111976 (ENSDARG00000059412)	ENSDARG00000077878 #22	itgb1a (ENSDARG00000071863)	nrp1a (ENSDARG00000102153)	ENSDARG00000071864	ENSDARG00000101358	ENSDARG00000110804	CUL2 (ENSDARG00000013965)	ENSDARG00000012642	RREB1 (ENSDARG00000063701)	ly86 (ENSDARG00000090649)	F13A1 (ENSDARG00000094832)	f13a1a.1 (ENSDARG00000045453)	nrn1a (ENSDARG00000071860)	fars2 (ENSDARG00000091247)	LYRM4 (ENSDARG00000101110)	ENSDARG00000104576
Clupeiformes	ANCESTRAL SPECIES	405																ENSGT00940000158009.a #22	ENSGT00390000017291.a.e	ENSGT00390000017291.a.f	ENSGT00940000154634.c.lb.a	ENSGT00940000154634.d.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00940000155562.l.b	ENSGT00390000008527
Denticle herring	MODERN SPECIES	11	ENSDCDG00000002075	ENSDCDG00000002072	ENSDCDG00000002069	ENSDCDG00000002065	ENSDCDG00000002061	ENSDCDG00000002058	ENSDCDG00000002054	ENSDCDG00000002048	ENSDCDG00000002041	ENSDCDG00000002035	ENSDCDG00000002029	ENSDCDG00000002026	ENSDCDG00000002024	ENSDCDG00000002021	wdr37 (ENSDCDG00000001789)	ENSDCDG00000001768 #22	ENSDCDG00000001763	ENSDCDG00000001761	IMPA1 (ENSDCDG00000001759)	CDH7 (ENSDCDG00000001755)	ENSDCDG00000001752	DSEL (ENSDCDG00000001750)	ENSDCDG00000001741	ENSDCDG00000001739	ENSDCDG00000001737	ENSDCDG00000001730	ENSDCDG00000001728	TMX3 (ENSDCDG00000001619)	PXDC1 (ENSDCDG00000001602)	prpf4bb (ENSDCDG00000001596)	idi1 (ENSDCDG00000001589)
Actinopterygii	ANCESTRAL SPECIES	149	ENSGT00940000168188	ENSGT00730000111317	ENSGT00940000158167	ENSGT00940000164469	ENSGT01030000234510.a.a.a.a.a.b	ENSGT00390000001801	ENSGT00730000111052	ENSGT00730000111450 #27	ENSGT00940000155469 #26	ENSGT00940000160746 #25	ENSGT00390000018047 #24	ENSGT00940000160025 #23	ENSGT00390000009802.a #16	ENSGT00390000009802.b #18	ENSGT00390000012189 #20	ENSGT00940000158009.b #22	ENSGT00940000156325	ENSGT00940000168554	ENSGT00550000074817	ENSGT00450000040296	ENSGT01030000234607.A.a.a.a.c
Reedfish	MODERN SPECIES	14	ENSECRG00000004272	ENSECRG00000004263	cdh12a (ENSECRG00000004259)	ENSECRG00000004253	ENSECRG00000004247	CDH18 (ENSECRG00000004237)	ENSECRG00000004229	ENSECRG00000004224	MYO10 (ENSECRG00000004190) #26	RETREG1 (ENSECRG00000004172) #25	ZNF622 (ENSECRG00000004166) #24	MARCHF11 (ENSECRG00000004159) #23	OTULINL (ENSECRG00000004148) #16	OTULIN (ENSECRG00000004116) #18	ankhb (ENSECRG00000004081) #20	fbxl7 (ENSECRG00000004053) #22	ENSECRG00000004042	NFX1 (ENSECRG00000004030)	ENSECRG00000004014	chmp5b (ENSECRG00000004004)	bag1 (ENSECRG00000003996)	FASTKD3 (ENSECRG00000003992)	ENSECRG00000003986	ENSECRG00000003983	dipk1c (ENSECRG00000003975)	afg3l2 (ENSECRG00000003957)	ENSECRG00000003943	ENSECRG00000003939	colec12 (ENSECRG00000003932)	clul1 (ENSECRG00000007243)	tyms (ENSECRG00000007222)
Neopterygii	ANCESTRAL SPECIES	220	ENSGT00940000159820	ENSGT00390000000805	ENSGT00940000157001	ENSGT00390000017582	ENSGT00390000016415	ENSGT00930000151367	ENSGT01030000234667.a.a.b	ENSGT00940000155925	ENSGT00940000157116	ENSGT00940000157866	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00390000014722	ENSGT00940000158009.b #22
Spotted gar	MODERN SPECIES	675	bfsp2 (ENSLOCG00000012071)	cdv3 (ENSLOCG00000012062)	topbp1 (ENSLOCG00000012044)	DNAJC13 (ENSLOCG00000012015)	lztfl1 (ENSLOCG00000012008)	zgc:136930 (ENSLOCG00000012001)	ccr9a (ENSLOCG00000011998)	gli3 (ENSLOCG00000011983)	inhbab (ENSLOCG00000011979)	sugct (ENSLOCG00000011972)	mplkip (ENSLOCG00000011967)	CDK13 (ENSLOCG00000011954)	ralab (ENSLOCG00000011940)	zgc:111976 (ENSLOCG00000011924)	zgc:55781 (ENSLOCG00000011919)	fbxl7 (ENSLOCG00000011912) #22	ENSLOCG00000018135	chmp4c (ENSLOCG00000011903)	zfand1 (ENSLOCG00000011892)	ENSLOCG00000011886	si:dkey-29d8.3 (ENSLOCG00000011881)	ENSLOCG00000011864	msrb2 (ENSLOCG00000011855)	ARMC3 (ENSLOCG00000011846)	pip4k2aa (ENSLOCG00000011828)	spag6 (ENSLOCG00000011816)	bmi1b (ENSLOCG00000011803)	commd3 (ENSLOCG00000011800)	dnajc1 (ENSLOCG00000011779)	MLLT10 (ENSLOCG00000011763)	SKIDA1 (ENSLOCG00000011750)
Osteoglossocephalai	ANCESTRAL SPECIES	58	ENSGT00940000170978	ENSGT00940000171800	ENSGT00390000006452.a	ENSGT00940000159977	ENSGT00940000170651	ENSGT00390000018596.A.b	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00940000157852	ENSGT00940000155142	ENSGT00660000095569.c	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT01100000263502.B.a.a.c	ENSGT00940000154634.c.lb.a	ENSGT00940000157031.k	ENSGT00940000166818	ENSGT00390000006522.a.a	ENSGT00930000151022.a	ENSGT00390000009209	ENSGT00910000144592	ENSGT00940000155562
Clupeocephala	ANCESTRAL SPECIES	248															ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT01100000263502.B.a.a.c	ENSGT00910000144592	ENSGT00940000155562.l.a	ENSGT00990000210078	ENSGT01030000234667.a.a.b.f	ENSGT00930000151367.d.a	ENSGT00940000159820	ENSGT00940000157026	ENSGT00910000148338
Euteleosteomorpha	ANCESTRAL SPECIES	188												ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00530000064112.a	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT01100000263502.B.a.a.c	ENSGT00910000144592	ENSGT00940000155562.l.a	ENSGT00990000210078	ENSGT01030000234667.a.a.b.f	ENSGT00930000151367.d.a	ENSGT00940000159820	ENSGT00940000157026	ENSGT00910000148338	ENSGT00940000155594.d
Protacanthopterygii	ANCESTRAL SPECIES	38													ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT01100000263502.B.a.a.c	ENSGT00390000009209.h	ENSGT00910000144592	ENSGT00940000155562.l.a	ENSGT00990000210078	ENSGT01030000234667.a.a.b.f	ENSGT00930000151367.d.a	ENSGT00940000159820	ENSGT00630000089910.u	ENSGT01050000244890.a.b.b.d
Salmoninae	ANCESTRAL SPECIES	345													ENSGT00940000157116.e.k	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00940000157031.l.c	ENSGT00390000006522.a.b	ENSGT00930000151022.b.c	ENSGT01100000263502.B.a.a.c	ENSGT00390000009209.h	ENSGT00940000155562.l.a.d	ENSGT00990000210078	ENSGT01030000234667.a.a.b.f.c	ENSGT00930000151367.d.a	ENSGT00940000159820.d	ENSGT00630000089910.u.a	ENSGT01050000244890.a.b.b.d	ENSGT00630000089884.B.a	ENSGT00940000159566
Huchen	DUPLICATION
Huchen	MODERN SPECIES	2958													mplkip (ENSHHUG00000045836)	ENSHHUG00000045833	zgc:55781 (ENSHHUG00000045818)	fbxl7 (ENSHHUG00000045816) #22
Huchen	MODERN SPECIES	1998											ENSHHUG00000014504	mier1b (ENSHHUG00000014473)	insl5b (ENSHHUG00000014470)	dynlt5 (ENSHHUG00000014465)	SGIP1 (ENSHHUG00000014461)	fbxl7 (ENSHHUG00000014417) #22	impa1 (ENSHHUG00000014396)
Salmoninae_a	ANCESTRAL SPECIES	6	ENSGT00940000155702.c.b	ENSGT00940000154799.v	ENSGT01030000234767.b	ENSGT00940000154799.u.b.b	ENSGT00640000091492.a.d.c	ENSGT00940000178275	ENSGT00940000155020.u.b.g.a.c	ENSGT00940000165403.b.b.b.b	ENSGT00940000159301.c.b	ENSGT00950000183110.b.b.k.b.d	ENSGT00940000156998.j.b.c	ENSGT00940000154535.D.vb.b.b.k.a	ENSGT00940000163518	ENSGT00940000153601.a.b.d.b	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00940000157031.l.c	ENSGT00390000006522.a.b	ENSGT00930000151022.b.c	ENSGT01100000263502.B.a.a.c	ENSGT00390000009209.h	ENSGT00940000155562.l.a.d	ENSGT00990000210078	ENSGT01030000234667.a.a.b.f.c	ENSGT00930000151367.d.a	ENSGT00940000159820.d	ENSGT00630000089910.u.a	ENSGT01050000244890.a.b.b.d	ENSGT00630000089884.B.a	ENSGT00940000159566
Oncorhynchus	ANCESTRAL SPECIES	15	ENSGT00940000154799.v	ENSGT01030000234767.b	ENSGT00940000154799.u.b.b	ENSGT00640000091492.a.d.c	ENSGT00940000158052.b.b	ENSGT00940000157047.m.a.b.c	ENSGT00530000063698.a.b.d.a.b	ENSGT00940000155020.u.b.g.b	ENSGT00940000165403.b.b.b.a.a	ENSGT00940000159301.c.b	ENSGT00950000183110.b.b.k.b.d	ENSGT00940000156998.j.b.c	ENSGT00940000163518	ENSGT00940000153601.a.b.d.b	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00940000157031.l.c	ENSGT00390000006522.a.b	ENSGT00390000009209.h	ENSGT00940000155562.l.a.d	ENSGT00990000210078	ENSGT01030000234667.a.a.b.f.c	ENSGT00930000151367.d.a	ENSGT00940000159820.d	ENSGT00630000089910.u.a	ENSGT01050000244890.a.b.b.d	ENSGT00630000089884.B.a	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b.i	ENSGT00940000165754.g.b
Oncorhynchus_a	ANCESTRAL SPECIES	57	ENSGT01030000234767.b	ENSGT00940000154799.u.b.b	ENSGT00640000091492.a.d.c	ENSGT00940000178275	ENSGT00940000158052.b.a	ENSGT00940000157047.m.a.b.c	ENSGT00530000063698.a.b.d.a.b	ENSGT00940000155020.u.b.g.b	ENSGT00940000165403.b.b.b.a.a	ENSGT00940000159301.c.b	ENSGT00950000183110.b.b.k.b.d	ENSGT00940000156998.j.b.c	ENSGT00940000163518	ENSGT00940000153601.a.b.d.b	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00940000157031.l.c	ENSGT00390000006522.a.b	ENSGT00390000009209.h	ENSGT00940000155562.l.a.d	ENSGT01030000234667.a.a.b.f.c	ENSGT00930000151367.d.a	ENSGT00940000159820.d	ENSGT00630000089910.u.a	ENSGT01050000244890.a.b.b.d	ENSGT00630000089884.B.a	ENSGT00940000159566	ENSGT01030000234607.A.a.a.b.i	ENSGT00940000165754.g.b	ENSGT00940000158259.a.e
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	20	ENSOTSG00005037530	fubp1 (ENSOTSG00005037529)	usp33 (ENSOTSG00005037527)	ENSOTSG00005037526	ak5 (ENSOTSG00005037523)	ENSOTSG00005037522	CC2D1B (ENSOTSG00005037514)	ENSOTSG00005037511	ENSOTSG00005037510	ENSOTSG00005037508	crygn1 (ENSOTSG00005037506)	OLFM3 (ENSOTSG00005037505)	mplkip (ENSOTSG00005037408)	ENSOTSG00005037402	zgc:55781 (ENSOTSG00005037399)	fbxl7 (ENSOTSG00005037397) #22	impa1 (ENSOTSG00005037393)	cdh7a (ENSOTSG00005037291)	DSEL (ENSOTSG00005037289)	ENSOTSG00005037287	ENSOTSG00005037282	ccr9a (ENSOTSG00005037279)	zgc:136930 (ENSOTSG00005037278)	bfsp2 (ENSOTSG00005037253)	abcf2a (ENSOTSG00005036092)	faim2a (ENSOTSG00005036075)	afg3l2 (ENSOTSG00005044405)	fastk (ENSOTSG00005044404)	ubtfl (ENSOTSG00005044306)	slc4a2a (ENSOTSG00005041554)	ENSOTSG00005041540
Chinook salmon	MODERN SPECIES	2934											ENSOTSG00005039738	inhbab (ENSOTSG00005039719)	mplkip (ENSOTSG00005039716)	ENSOTSG00005039687	zgc:55781 (ENSOTSG00005039686)	fbxl7 (ENSOTSG00005039685) #22	impa1 (ENSOTSG00005039684)	cdh7a (ENSOTSG00005039681)	ENSOTSG00005039677	ENSOTSG00005039674	ENSOTSG00005039617	ccr9a (ENSOTSG00005039614)	zgc:136930 (ENSOTSG00005039613)	bfsp2 (ENSOTSG00005039612)	abcf2a (ENSOTSG00005037441)	faim2a (ENSOTSG00005037419)	afg3l2 (ENSOTSG00005037260)	ppp2r5eb (ENSOTSG00005037148)	gphb5 (ENSOTSG00005037140)	ENSOTSG00005037130	ENSOTSG00005036241
Coho salmon	MODERN SPECIES	19	PTPRM (ENSOKIG00005047601)	ENSOKIG00005047491	CRYGN (ENSOKIG00005047477)	ENSOKIG00005047473	ENSOKIG00005047455	OLFM3 (ENSOKIG00005047434)	ENSOKIG00005047244	NTNG1 (ENSOKIG00005047186)	ENSOKIG00005047178	ENSOKIG00005047149	ENSOKIG00005047062	ENSOKIG00005046276	mplkip (ENSOKIG00005046079)	ENSOKIG00005046064	zgc:55781 (ENSOKIG00005046055)	fbxl7 (ENSOKIG00005046035) #22	impa1 (ENSOKIG00005046016)	cdh7a (ENSOKIG00005045711)	DSEL (ENSOKIG00005045680)	ENSOKIG00005045675	ENSOKIG00005045492	ccr9a (ENSOKIG00005045442)	zgc:136930 (ENSOKIG00005045434)	bfsp2 (ENSOKIG00005045419)	abcf2a (ENSOKIG00005044919)	faim2a (ENSOKIG00005044866)	RNF213 (ENSOKIG00005044692)	afg3l2 (ENSOKIG00005044292)	ENSOKIG00005044235	ENSOKIG00005044221	fastk (ENSOKIG00005044202)
Rainbow trout	MODERN SPECIES	20	ENSOMYG00000073199	ENSOMYG00000036045	ENSOMYG00000036034	ENSOMYG00000070051	ENSOMYG00000036007	ENSOMYG00000035994	ENSOMYG00000035987	ENSOMYG00000071995	ENSOMYG00000034912	ENSOMYG00000050750	inhbab (ENSOMYG00000060929)	mplkip (ENSOMYG00000034766)	ENSOMYG00000070819	zgc:55781 (ENSOMYG00000052597)	ENSOMYG00000061700	fbxl7 (ENSOMYG00000034744) #22	impa1 (ENSOMYG00000034724)	ENSOMYG00000076403	ENSOMYG00000068472	cdh7a (ENSOMYG00000034710)	ENSOMYG00000034700	ENSOMYG00000034696	ENSOMYG00000034642	ENSOMYG00000067817	ccr9a (ENSOMYG00000064113)	zgc:136930 (ENSOMYG00000034611)	bfsp2 (ENSOMYG00000034605)	ENSOMYG00000066226	ENSOMYG00000034471	ENSOMYG00000034388	ENSOMYG00000034368
Salmo	ANCESTRAL SPECIES	5	ENSGT00940000157047.m.a.b.c	ENSGT00530000063698.a.b.d.a.b	ENSGT00940000155020.u.b.g.b	ENSGT00940000165403.b.b.b.b	ENSGT00940000159301.c.b	ENSGT00950000183110.b.b.k.b.d	ENSGT00940000156998.j.b.c	ENSGT00940000154535.D.vb.b.b.k.a	ENSGT00940000163518	ENSGT00940000153601.a.b.d.b	ENSGT00990000203721.a.a	ENSGT00940000163461.a.a.a.b.c.b.b.b.a.a.b.b	ENSGT00940000157116.e.k	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT01090000261405.a	ENSGT00940000157031.l.c	ENSGT00390000006522.a.b	ENSGT00930000151022.b.c	ENSGT01100000263502.B.a.a.c	ENSGT00390000009209.h	ENSGT00940000155562.l.a.d	ENSGT00990000210078	ENSGT01030000234667.a.a.b.f.c	ENSGT00930000151367.d.a.f	ENSGT00940000159820.d	ENSGT00630000089910.u.a	ENSGT01050000244890.a.b.b.d	ENSGT00630000089884.B.a
River trout	MODERN SPECIES	24	ENSSTUG00000017979	OLFM3 (ENSSTUG00000017965)	ENSSTUG00000017956	col11a1b (ENSSTUG00000017946)	ENSSTUG00000017927	NTNG1 (ENSSTUG00000017915)	ENSSTUG00000017906	ENSSTUG00000017890	ENSSTUG00000004449	ENSSTUG00000003761	ENSSTUG00000003743	inhbab (ENSSTUG00000003739)	mplkip (ENSSTUG00000003728)	ENSSTUG00000003692	zgc:55781 (ENSSTUG00000017281)	fbxl7 (ENSSTUG00000017260) #22	ENSSTUG00000017250	impa1 (ENSSTUG00000017207)	ENSSTUG00000017144	ENSSTUG00000017142	ENSSTUG00000017120	cdh7a (ENSSTUG00000016600)	ENSSTUG00000016575	tmx3a (ENSSTUG00000016524)	opn4.1 (ENSSTUG00000016506)	ENSSTUG00000016494	ENSSTUG00000015319	ENSSTUG00000015282	ccr9a (ENSSTUG00000015275)	zgc:136930 (ENSSTUG00000015262)	bfsp2 (ENSSTUG00000015236)
Atlantic salmon	MODERN SPECIES	22	OLFM3 (ENSSSAG00000100188)	ENSSSAG00000106636	ENSSSAG00000039219	ENSSSAG00000039276	NTNG1 (ENSSSAG00000077715)	ENSSSAG00000100678	ENSSSAG00000083856	ENSSSAG00000033124	ENSSSAG00000086468	ENSSSAG00000059977	inhbab (ENSSSAG00000118983)	mplkip (ENSSSAG00000092718)	ENSSSAG00000092677	ENSSSAG00000116660	zgc:55781 (ENSSSAG00000059842)	fbxl7 (ENSSSAG00000111602) #22	impa1 (ENSSSAG00000059748)	ENSSSAG00000059674	cdh7a (ENSSSAG00000055200)	ENSSSAG00000055152	tmx3a (ENSSSAG00000055112)	ENSSSAG00000110411	opn4.1 (ENSSSAG00000055090)	ENSSSAG00000121839	ENSSSAG00000054881	ccr9a (ENSSSAG00000103772)	zgc:136930 (ENSSSAG00000054844)	ENSSSAG00000084775	bfsp2 (ENSSSAG00000054832)	ENSSSAG00000054770	ENSSSAG00000054764
Northern pike	MODERN SPECIES	2	ENSELUG00000028983	selenoj (ENSELUG00000006129)	vav3b (ENSELUG00000006103)	NTNG1 (ENSELUG00000006054)	amy2al1 (ENSELUG00000006012)	col11a1b (ENSELUG00000005985)	ENSELUG00000005889	tecrl2b (ENSELUG00000005883)	ABCA4 (ENSELUG00000005840)	arhgap29b (ENSELUG00000005767)	ENSELUG00000005692	inhbab (ENSELUG00000005630)	mplkip (ENSELUG00000005616)	ENSELUG00000005575	zgc:55781 (ENSELUG00000005552)	fbxl7 (ENSELUG00000005542) #22	impa1 (ENSELUG00000005529)	ENSELUG00000005497	cdh7a (ENSELUG00000005446)	ENSELUG00000034689	DSEL (ENSELUG00000000720)	tmx3a (ENSELUG00000017758)	opn4.1 (ENSELUG00000001550)	ENSELUG00000017737	ENSELUG00000000710	PRPF4B (ENSELUG00000017691)	ccr9a (ENSELUG00000017667)	zgc:136930 (ENSELUG00000000701)	ENSELUG00000017628	bfsp2 (ENSELUG00000017622)	abcf2a (ENSELUG00000017607)
Acanthomorphata	ANCESTRAL SPECIES	17	ENSGT00940000158259.a	ENSGT00940000165754	ENSGT01030000234607.A.a.a.b	ENSGT00940000159566	ENSGT00940000155594.d	ENSGT00910000148338	ENSGT00940000157026	ENSGT00940000159820	ENSGT01030000234667.a.a.b.f	ENSGT00910000144592	ENSGT01100000263502.B.a.a.c	ENSGT00930000151022.b	ENSGT00940000155106	ENSGT00390000014167	ENSGT00940000157075	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00940000157031.l	ENSGT00940000156678
Euacanthomorphacea	ANCESTRAL SPECIES	88	ENSGT00940000165754	ENSGT01030000234607.A.a.a.b	ENSGT00940000159566	ENSGT00940000155594.d	ENSGT00910000148338	ENSGT00940000157026	ENSGT00940000159820	ENSGT01030000234667.a.a.b.f	ENSGT00940000164334	ENSGT00910000144592	ENSGT01100000263502.B.a.a.c	ENSGT00930000151022.b	ENSGT00940000155106	ENSGT00390000014167	ENSGT00940000157075	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00940000157031.l	ENSGT00940000156678	ENSGT00390000014722	ENSGT00530000064112.a	ENSGT00940000157116.e	ENSGT00950000182882.A.b.a
Pinecone sodierfish	MODERN SPECIES	8												tmx3a (ENSMMDG00005012765)	CDY1 (ENSMMDG00005012760)	rpp40 (ENSMMDG00005012758)	riok1 (ENSMMDG00005012725)	fbxl7 (ENSMMDG00005012718) #22	ENSMMDG00005012393	impa1 (ENSMMDG00005012372)	ENSMMDG00005012367	ENSMMDG00005012365	cdh7a (ENSMMDG00005012361)	ENSMMDG00005012359	dnajc1 (ENSMMDG00005009049)	zgc:55781 (ENSMMDG00005009048)	ENSMMDG00005009046	inhbab (ENSMMDG00005009026)	amph (ENSMMDG00005008829)	ENSMMDG00005008815	asap1a (ENSMMDG00005008419)	tmub1 (ENSMMDG00005008404)	ENSMMDG00005008397
Otomorpha	ANCESTRAL SPECIES	148															ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00390000018056
Clupeiformes	ANCESTRAL SPECIES	66	ENSGT00390000001319.e	ENSGT00940000164667.b.a.b	ENSGT00500000044852.a.a.b #11	ENSGT00940000155171.a.b.d #9	ENSGT00390000014771.a	ENSGT00940000156700.d	ENSGT00940000159988.d	ENSGT00940000154847.n.b	ENSGT00940000156473.f.b	ENSGT00940000158635.d	ENSGT00940000156130.a.b	ENSGT00390000018710	ENSGT00390000002582	ENSGT00940000155142	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000158362	ENSGT00390000018302
Atlantic herring	MODERN SPECIES	17	ctnnd2b (ENSCHAG00000011975) #13	ANKRD33B (ENSCHAG00000011899) #11	marchf6 (ENSCHAG00000011455) #9	atpsckmt (ENSCHAG00000011430)	NETO1 (ENSCHAG00000011425)	cbln2a (ENSCHAG00000011390)	socs6b (ENSCHAG00000011384)	crispld1b (ENSCHAG00000011250)	PI15 (ENSCHAG00000011235)	jph1b (ENSCHAG00000011219)	TMEM70 (ENSCHAG00000011211)	mplkip (ENSCHAG00000011202)	ralab (ENSCHAG00000011185)	ENSCHAG00000011182	zgc:55781 (ENSCHAG00000011175)	fbxl7 (ENSCHAG00000011154) #22	IMPA1 (ENSCHAG00000011116)	impa1 (ENSCHAG00000011071)	ENSCHAG00000011052	ENSCHAG00000011020	cdh7a (ENSCHAG00000010112)	DSEL (ENSCHAG00000010091)	ENSCHAG00000010074	tesk2 (ENSCHAG00000010014)	toe1 (ENSCHAG00000009957)	selenop2 (ENSCHAG00000009911)	elovl8a (ENSCHAG00000009284)	zswim5 (ENSCHAG00000008925)	urod (ENSCHAG00000008435)	lyn (ENSCHAG00000005961)	ENSCHAG00000005851
Denticle herring	MODERN SPECIES	14	GPR141 (ENSDCDG00000013342)	ctnnd2b (ENSDCDG00000004895) #13	ANKRD33B (ENSDCDG00000004745) #11	marchf6 (ENSDCDG00000004719) #9	atpsckmt (ENSDCDG00000004703)	ENSDCDG00000004698	cbln2a (ENSDCDG00000004696)	socs6b (ENSDCDG00000004692)	crispld1b (ENSDCDG00000004684)	PI15 (ENSDCDG00000004675)	jph1b (ENSDCDG00000004673)	TMEM70 (ENSDCDG00000004668)	ENSDCDG00000004664	ralab (ENSDCDG00000004662)	zgc:55781 (ENSDCDG00000004658)	fbxl7 (ENSDCDG00000004656) #22	impa1 (ENSDCDG00000004563)	ENSDCDG00000004545	cdh7a (ENSDCDG00000003945)	DSEL (ENSDCDG00000003922)	tmx3a (ENSDCDG00000003919)	toe1 (ENSDCDG00000003915)	tesk2 (ENSDCDG00000003899)	selenop2 (ENSDCDG00000003894)	elovl8a (ENSDCDG00000003892)	zswim5 (ENSDCDG00000003868)	urod (ENSDCDG00000003844)	lyn (ENSDCDG00000001389)	ENSDCDG00000001167	tmem68 (ENSDCDG00000001163)	xkr4 (ENSDCDG00000001160)
Otophysi	ANCESTRAL SPECIES	90	ENSGT00940000157533	ENSGT00940000157075	ENSGT00940000154775.c.b.d.a	ENSGT00940000156678	ENSGT00530000064862	ENSGT00940000166630	ENSGT00940000160089.i	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000159566	ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782
Characiphysae	ANCESTRAL SPECIES	52	ENSGT00940000157075	ENSGT00940000154775.c.b.d.a	ENSGT00940000156508.i	ENSGT00940000156678	ENSGT00530000064862	ENSGT00940000166630	ENSGT00940000160089.i	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000159566	ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782.g
Channel catfish	MODERN SPECIES	12	PIP4K2A (ENSIPUG00000003162)	bmi1b (ENSIPUG00000003131)	dnajc1 (ENSIPUG00000003096)	si:dkey-29d8.3 (ENSIPUG00000003068)	ENSIPUG00000003051	ENSIPUG00000003040	klhl40a (ENSIPUG00000003027)	hhatl (ENSIPUG00000002997)	ctdsplb (ENSIPUG00000002967)	plcd1b (ENSIPUG00000002939)	afg3l2 (ENSIPUG00000002881)	inhba (ENSIPUG00000002868)	mplkip (ENSIPUG00000002860)	rala (ENSIPUG00000002855)	zgc:55781 (ENSIPUG00000002849)	fbxl7 (ENSIPUG00000002841) #22	impa1 (ENSIPUG00000002824)	ENSIPUG00000002800	cdh7 (ENSIPUG00000002782)	dsel (ENSIPUG00000002777)	tmx3a (ENSIPUG00000002758)	tesk2 (ENSIPUG00000002727)	toe1 (ENSIPUG00000002717)	si:ch73-382f3.1 (ENSIPUG00000002706)	ENSIPUG00000002693	ZSWIM5 (ENSIPUG00000002656)	urod (ENSIPUG00000002647)	lyn (ENSIPUG00000002353)	tgs1 (ENSIPUG00000002294)	TMEM68 (ENSIPUG00000002273)	xkr4 (ENSIPUG00000002266)
Characiphysae_b	ANCESTRAL SPECIES	55	ENSGT00940000157075	ENSGT00940000154775.c.b.d.a	ENSGT00940000156508.i	ENSGT00940000156678	ENSGT00940000166630	ENSGT00940000180074.a	ENSGT00940000160089.i	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000159566	ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782.g
Characoidei	ANCESTRAL SPECIES	46	ENSGT00940000157075	ENSGT00940000154775.c.b.d.a	ENSGT00940000156508.i	ENSGT00940000156678	ENSGT00940000166630	ENSGT00940000180074.a	ENSGT00940000160089.i	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000159566	ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT00940000158765	ENSGT00940000153167.B	ENSGT00940000167820	ENSGT00510000049326.b.a	ENSGT01050000244838.B.a	ENSGT00940000158362	ENSGT00390000018302	ENSGT00940000158011	ENSGT00390000018056	ENSGT00390000011782.g
Red-bellied piranha	MODERN SPECIES	185	NFATC1 (ENSPNAG00000007025)	ENSPNAG00000028248	si:dkey-29d8.3 (ENSPNAG00000006073)	ENSPNAG00000028220	ENSPNAG00000028212	ENSPNAG00000004318	klhl40a (ENSPNAG00000028180)	hhatla (ENSPNAG00000028167)	ctdsplb (ENSPNAG00000028104)	plcd1b (ENSPNAG00000028052)	afg3l2 (ENSPNAG00000004288)	inhbab (ENSPNAG00000027986)	mplkip (ENSPNAG00000027979)	ralab (ENSPNAG00000027973)	zgc:55781 (ENSPNAG00000006617)	fbxl7 (ENSPNAG00000006835) #22	impa1 (ENSPNAG00000027923)	ENSPNAG00000027885
Mexicana tetra	MODERN SPECIES	8	TMEM70 (ENSAMXG00000031536)	jph1b (ENSAMXG00000032261)	PI15 (ENSAMXG00000037865)	crispld1b (ENSAMXG00000008575)	socs6b (ENSAMXG00000024867)	cbln2a (ENSAMXG00000029936)	IWS1 (ENSAMXG00000008615)	ENSAMXG00000032849	ENSAMXG00000038163	ctdsplb (ENSAMXG00000036756)	plcd1b (ENSAMXG00000030450)	afg3l2 (ENSAMXG00000000961)	inhbab (ENSAMXG00000038698)	ralab (ENSAMXG00000000974)	zgc:55781 (ENSAMXG00000000977)	fbxl7 (ENSAMXG00000038978) #22	impa1 (ENSAMXG00000000980)	ENSAMXG00000000984	cdh7a (ENSAMXG00000001796)	DSEL (ENSAMXG00000026100)	tmx3a (ENSAMXG00000036311)	tesk2 (ENSAMXG00000032510)	toe1 (ENSAMXG00000031029)	si:ch73-382f3.1 (ENSAMXG00000014203)	ENSAMXG00000043086	zswim5 (ENSAMXG00000014153)	urod (ENSAMXG00000034296)	lyn (ENSAMXG00000014106)	ENSAMXG00000014086	tmem68 (ENSAMXG00000014074)	xkr4 (ENSAMXG00000042513)
Electric eel	MODERN SPECIES	49				ENSEEEG00000020737	ENSEEEG00000020752	ENSEEEG00000020753	klhl40a (ENSEEEG00000020756)	hhatla (ENSEEEG00000020757)	ctdsplb (ENSEEEG00000020759)	plcd1b (ENSEEEG00000020821)	afg3l2 (ENSEEEG00000021517)	inhbab (ENSEEEG00000021715)	mplkip (ENSEEEG00000021716)	ralab (ENSEEEG00000021717)	zgc:55781 (ENSEEEG00000021718)	fbxl7 (ENSEEEG00000021719) #22	impa1 (ENSEEEG00000021721)	ENSEEEG00000021723	cdh7a (ENSEEEG00000021725)	DSEL (ENSEEEG00000021727)	ENSEEEG00000021728	tesk2 (ENSEEEG00000021729)	toe1 (ENSEEEG00000021732)	ENSEEEG00000021733	zswim5 (ENSEEEG00000021736)	urod (ENSEEEG00000021745)	lyn (ENSEEEG00000021950)	ENSEEEG00000023076	tmem68 (ENSEEEG00000023077)	xkr4 (ENSEEEG00000023078)	ENSEEEG00000023079
Cyprinoidei	ANCESTRAL SPECIES	21	ENSGT00940000157533	ENSGT00940000157075	ENSGT00940000154775.c.b.d.b.b	ENSGT00940000156678	ENSGT00530000064862	ENSGT00940000166630	ENSGT00940000160089.i	ENSGT00940000156360.d	ENSGT00530000063629.b.d	ENSGT01040000240451.a.b.b.a.a	ENSGT00940000158392.e.a	ENSGT00940000159566	ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000153649.A	ENSGT00940000153886.a.b	ENSGT00940000158863	ENSGT00940000159497	ENSGT00940000153141.B.a	ENSGT00950000183056.B.b	ENSGT00940000154284.a	ENSGT00530000063408.B.c.a	ENSGT00940000164907.a	ENSGT00940000154339	ENSGT00390000006671	ENSGT00940000159311.d.a.b	ENSGT01060000248660	ENSGT00940000158258.f	ENSGT00550000074822
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	8	ENSGT00940000154775.c.b.d.b.a.b	ENSGT00940000156508.i.b	ENSGT00940000156042.`b.b	ENSGT00940000156678.a	ENSGT00940000166630.b	ENSGT00940000160089.i.a	ENSGT00940000156360.d.b	ENSGT00530000063629.b.d.a.a	ENSGT01040000240451.a.b.b.a.a.d	ENSGT00940000158392.e.a.b	ENSGT00940000159566.j	ENSGT00940000157116.e.d	ENSGT00390000002582.r	ENSGT00940000155142.nb.a	ENSGT00390000014722.l	ENSGT00940000158009.b.e #22	ENSGT00940000153649.A.ab	ENSGT00940000153886.a.b.x	ENSGT00940000158863.l	ENSGT00940000159497.m	ENSGT00940000153141.B.a.x.a.a	ENSGT00950000183056.B.b.k	ENSGT00940000154284.a	ENSGT00530000063408.B.c.a.d	ENSGT00940000164907.a.b	ENSGT00940000154339.q.a	ENSGT00390000006671.v	ENSGT00940000159311.d.a.b.a	ENSGT01060000248660.b.b	ENSGT00940000158258.f.b	ENSGT00940000158655.f.b
Goldfish	MODERN SPECIES	11	ENSCARG00000045548	angptl4 (ENSCARG00000045504)	rps28 (ENSCARG00000045484)	ENSCARG00000045470	ENSCARG00000045449	ENSCARG00000045385	ENSCARG00000045358	klhl40a (ENSCARG00000045317)	hhatla (ENSCARG00000044861)	ctdsplb (ENSCARG00000022651)	plcd1b (ENSCARG00000022480)	afg3l2 (ENSCARG00000021923)	inhbab (ENSCARG00000021851)	ralab (ENSCARG00000021839)	zgc:55781 (ENSCARG00000021832)	fbxl7 (ENSCARG00000021811) #22	CHD7 (ENSCARG00000017839)	rab2a (ENSCARG00000017667)	ca8 (ENSCARG00000017614)	tox (ENSCARG00000017569)	cyp7a1 (ENSCARG00000017547)	fam110b (ENSCARG00000017541)	selenof (ENSCARG00000017519)	hs2st1a (ENSCARG00000017505)	zgc:56628 (ENSCARG00000017493)	PKN2 (ENSCARG00000013624)	gtf2b (ENSCARG00000013426)	ENSCARG00000013413	ENSCARG00000013411	ENSCARG00000013407	znf644a (ENSCARG00000013403)
Cyprininae_a	ANCESTRAL SPECIES	65	ENSGT00940000154775.c.b.d.b.a.b	ENSGT00940000156508.i.b	ENSGT00940000156042.`b.b	ENSGT00940000156678.a	ENSGT00940000166630.b	ENSGT00940000160089.i.a	ENSGT00940000156360.d.b	ENSGT00530000063629.b.d.a.a	ENSGT01040000240451.a.b.b.a.a.d	ENSGT00940000158392.e.a.b	ENSGT00940000159566.j	ENSGT00940000157116.e.d	ENSGT00390000002582.r	ENSGT00940000155142.nb.a	ENSGT00390000014722.l	ENSGT00940000158009.b.e #22	ENSGT00940000153649.A.ab	ENSGT00940000153886.a.b.x	ENSGT00940000158863.l	ENSGT00940000159497.m	ENSGT00940000153141.B.a.x.a.a	ENSGT00950000183056.B.b.k	ENSGT00940000154284.a.j	ENSGT00530000063408.B.c.a.d	ENSGT00940000164907.a.b	ENSGT00940000154339.q.a	ENSGT00390000006671.v	ENSGT00940000159311.d.a.b.a	ENSGT00940000158258.f.b	ENSGT00940000158655.f.b	ENSGT00940000160749.a.b.s
Common carp reference	MODERN SPECIES	21	riok1 (ENSCCRG00000012299)	nebl (ENSCCRG00000057593)	ENSCCRG00000012193	bmi1b (ENSCCRG00000016417)	dnajc1 (ENSCCRG00000013570)	ENSCCRG00000016436	ENSCCRG00000078258	klhl40a (ENSCCRG00000017538)	hhatla (ENSCCRG00000017425)	ctdsplb (ENSCCRG00000034994)	plcd1b (ENSCCRG00000016599)	afg3l2 (ENSCCRG00000016486)	inhbab (ENSCCRG00000016474)	zgc:55781 (ENSCCRG00000054754)	mplkip (ENSCCRG00000067845)	fbxl7 (ENSCCRG00000048817) #22	CHD7 (ENSCCRG00000017551)	rab2a (ENSCCRG00000049588)	ca8 (ENSCCRG00000070510)	tox (ENSCCRG00000056161)	cyp7a1 (ENSCCRG00000055909)	fam110b (ENSCCRG00000079063)	selenof (ENSCCRG00000078342)	hs2st1a (ENSCCRG00000016267)	ENSCCRG00000078384	zgc:56628 (ENSCCRG00000054761)	PKN2 (ENSCCRG00000012764)	gtf2b (ENSCCRG00000080102)	ENSCCRG00000062608	znf644a (ENSCCRG00000069340)	ENSCCRG00000071158
Golden-line barbel	MODERN SPECIES	120	ENSSGRG00000051056	ENSSGRG00000051058	bmi1b (ENSSGRG00000051104)	dnajc1 (ENSSGRG00000051106)	ENSSGRG00000051113	ENSSGRG00000051176	klhl40a (ENSSGRG00000051178)	hhatla (ENSSGRG00000051180)	ctdsplb (ENSSGRG00000051196)	plcd1b (ENSSGRG00000051230)	afg3l2 (ENSSGRG00000051233)	inhbab (ENSSGRG00000051280)	mplkip (ENSSGRG00000051282)	ralab (ENSSGRG00000051283)	zgc:55781 (ENSSGRG00000051284)	fbxl7 (ENSSGRG00000051286) #22	CHD7 (ENSSGRG00000051288)	rab2a (ENSSGRG00000051303)	ca8 (ENSSGRG00000051304)	tox (ENSSGRG00000051305)	cyp7a1 (ENSSGRG00000051306)	fam110b (ENSSGRG00000051309)	selenof (ENSSGRG00000051310)	hs2st1a (ENSSGRG00000051311)	zgc:56628 (ENSSGRG00000051334)	PKN2 (ENSSGRG00000051335)	gtf2b (ENSSGRG00000051338)	ENSSGRG00000051404	ENSSGRG00000051405	ENSSGRG00000051407	SOX14 (ENSSGRG00000051408)
Cyprininae	ANCESTRAL SPECIES	103	ENSGT00940000154775.c.b.d.b.a.a	ENSGT00940000156508.i.a	ENSGT00940000156042.`b.a	ENSGT00940000156678.b	ENSGT00940000166630.a	ENSGT00940000160089.i.b	ENSGT00940000156360.d.a	ENSGT00530000063629.b.d.a.b	ENSGT01040000240451.a.b.b.a.a.c	ENSGT00940000158392.e.a.a	ENSGT00940000159566.i	ENSGT00940000157116.e.c	ENSGT00390000002582.q	ENSGT00940000155142.nb.b	ENSGT00390000014722.k	ENSGT00940000158009.b.f #22	ENSGT00940000153649.A.`b	ENSGT00940000153886.a.b.w	ENSGT00940000158863.k	ENSGT00940000159497.n	ENSGT00940000153141.B.a.x.a.b	ENSGT00950000183056.B.b.l	ENSGT00530000063408.B.c.a.c	ENSGT00940000164907.a.a	ENSGT00940000154339.q.b	ENSGT00390000006671.u	ENSGT00940000159311.d.a.b.b	ENSGT01060000248660.b.a	ENSGT00940000158258.f.a	ENSGT00550000074822	ENSGT00940000158655.f.a.b
Goldfish	MODERN SPECIES	19	nebl (ENSCARG00000028595)	ENSCARG00000028076	bmi1b (ENSCARG00000028020)	dnajc1 (ENSCARG00000027834)	ENSCARG00000027536	ENSCARG00000027524	klhl40a (ENSCARG00000027488)	hhatla (ENSCARG00000027408)	ctdsplb (ENSCARG00000027225)	plcd1b (ENSCARG00000026625)	afg3l2 (ENSCARG00000025772)	inhbab (ENSCARG00000025734)	mplkip (ENSCARG00000025728)	ralab (ENSCARG00000025716)	zgc:55781 (ENSCARG00000025712)	fbxl7 (ENSCARG00000025690) #22	CHD7 (ENSCARG00000019321)	rab2a (ENSCARG00000019150)	ca8 (ENSCARG00000019124)	tox (ENSCARG00000019105)	cyp7a1 (ENSCARG00000019076)	fam110b (ENSCARG00000019069)	selenof (ENSCARG00000019060)	hs2st1a (ENSCARG00000019043)	zgc:56628 (ENSCARG00000019021)	PKN2 (ENSCARG00000018708)	gtf2b (ENSCARG00000018659)	ENSCARG00000018656	ENSCARG00000018647	znf644a (ENSCARG00000018643)	HFM1 (ENSCARG00000018605)
Cyprininae_a	ANCESTRAL SPECIES	4	ENSGT00940000154775.c.b.d.b.a.a	ENSGT00940000156508.i.a	ENSGT00940000156042.`b.a	ENSGT00940000156678.b	ENSGT00940000166630.a	ENSGT00940000160089.i.b	ENSGT00940000156360.d.a	ENSGT00530000063629.b.d.a.b	ENSGT01040000240451.a.b.b.a.a.c	ENSGT00940000158392.e.a.a	ENSGT00940000159566.i	ENSGT00940000157116.e.c	ENSGT00390000002582.q	ENSGT00940000155142.nb.b	ENSGT00390000014722.k	ENSGT00940000158009.b.f #22	ENSGT00940000153649.A.`b	ENSGT00940000153886.a.b.w	ENSGT00940000158863.k	ENSGT00940000159497.n	ENSGT00940000153141.B.a.x.a.b	ENSGT00950000183056.B.b.l	ENSGT00940000154284.a.i	ENSGT00530000063408.B.c.a.c	ENSGT00940000164907.a.a	ENSGT00940000154339.q.b	ENSGT00390000006671.u	ENSGT00940000159311.d.a.b.b	ENSGT01060000248660.b.a	ENSGT00940000158258.f.a	ENSGT00550000074822
Common carp reference	MODERN SPECIES	29	nebl (ENSCCRG00000063547)	ENSCCRG00000012268	bmi1b (ENSCCRG00000013563)	dnajc1 (ENSCCRG00000071777)	ENSCCRG00000018499	ENSCCRG00000060034	ENSCCRG00000018484	klhl40a (ENSCCRG00000058162)	hhatla (ENSCCRG00000053544)	ctdsplb (ENSCCRG00000066449)	plcd1b (ENSCCRG00000017818)	afg3l2 (ENSCCRG00000076494)	inhbab (ENSCCRG00000016465)	mplkip (ENSCCRG00000079524)	zgc:55781 (ENSCCRG00000076218)	fbxl7 (ENSCCRG00000017549) #22	CHD7 (ENSCCRG00000064547)	rab2a (ENSCCRG00000074088)	ca8 (ENSCCRG00000049617)	tox (ENSCCRG00000034480)	cyp7a1 (ENSCCRG00000034486)	fam110b (ENSCCRG00000071280)	selenof (ENSCCRG00000058960)	hs2st1a (ENSCCRG00000082113)	zgc:56628 (ENSCCRG00000065305)	PKN2 (ENSCCRG00000058743)	gtf2b (ENSCCRG00000021960)	ENSCCRG00000073161	znf644a (ENSCCRG00000021939)	ENSCCRG00000073109	ENSCCRG00000046986
Golden-line barbel	MODERN SPECIES	4	RREB1 (ENSSGRG00000053032)	nebl (ENSSGRG00000053034)	ENSSGRG00000053036	bmi1b (ENSSGRG00000053099)	dnajc1 (ENSSGRG00000053102)	ENSSGRG00000053113	ENSSGRG00000053126	klhl40a (ENSSGRG00000053127)	ctdsplb (ENSSGRG00000053130)	plcd1b (ENSSGRG00000053141)	afg3l2 (ENSSGRG00000053147)	inhbab (ENSSGRG00000053186)	mplkip (ENSSGRG00000053194)	ralab (ENSSGRG00000053187)	zgc:55781 (ENSSGRG00000053195)	fbxl7 (ENSSGRG00000053196) #22	CHD7 (ENSSGRG00000053210)	rab2a (ENSSGRG00000053316)	ca8 (ENSSGRG00000053320)	tox (ENSSGRG00000053325)	cyp7a1 (ENSSGRG00000053326)	fam110b (ENSSGRG00000000076)	selenof (ENSSGRG00000000082)	hs2st1a (ENSSGRG00000000107)	zgc:56628 (ENSSGRG00000000149)	PKN2 (ENSSGRG00000000468)	gtf2b (ENSSGRG00000006184)	ENSSGRG00000006363	ENSSGRG00000006364	znf644a (ENSSGRG00000006375)	HFM1 (ENSSGRG00000006382)
Zebrafish	MODERN SPECIES	11	ENSDARG00000063544	bmi1b (ENSDARG00000013076)	dnajc1 (ENSDARG00000001940)	si:dkey-29d8.3 (ENSDARG00000091879)	ENSDARG00000028878	ENSDARG00000057751	klhl40a (ENSDARG00000039052)	hhatla (ENSDARG00000039051)	ctdsplb (ENSDARG00000062116)	plcd1b (ENSDARG00000034080)	afg3l2 (ENSDARG00000062272)	inhbab (ENSDARG00000024759)	mplkip (ENSDARG00000078986)	ralab (ENSDARG00000016253)	C2H7orf25 (ENSDARG00000057184)	fbxl7 (ENSDARG00000062251) #22	CHD7 (ENSDARG00000075211)	rab2a (ENSDARG00000020261)	ca8 (ENSDARG00000039098)	tox (ENSDARG00000032317)	cyp7a1 (ENSDARG00000069018)	fam110b (ENSDARG00000088073)	selenof (ENSDARG00000099664)	hs2st1a (ENSDARG00000099478)	zgc:56628 (ENSDARG00000110020)	PKN2 (ENSDARG00000101983)	gtf2b (ENSDARG00000103578)	ENSDARG00000103370	znf644a (ENSDARG00000101361)	HFM1 (ENSDARG00000104288)	SOX14 (ENSDARG00000111969)
Osteoglossiformes	ANCESTRAL SPECIES	143				ENSGT00390000014167	ENSGT00940000155106.hb	ENSGT00940000156770	ENSGT00390000006452.a.m	ENSGT00940000159566	ENSGT00940000170651	ENSGT00390000018596.A.b.j	ENSGT00940000157116.e	ENSGT00390000002582	ENSGT00940000157852.f	ENSGT00940000155142	ENSGT00390000014722	ENSGT00940000158009.b #22	ENSGT00940000154634.c.lb.b	ENSGT00940000154634.d.b	ENSGT00530000064112.a	ENSGT00940000157031.l	ENSGT00390000006522.a.b	ENSGT00930000151022.b	ENSGT01100000263502.B.a.a.c	ENSGT00390000009209.s	ENSGT00910000144592	ENSGT00940000155562	ENSGT00940000155925.a.b	ENSGT01030000234667.a.a.b.f	ENSGT00930000151367	ENSGT00390000016415.a	ENSGT00390000017582.f
Asian bonytongue	MODERN SPECIES	22	ENSSFOG00015025766	ENSSFOG00015001185	ENSSFOG00015029788	ENSSFOG00015031195	cyb5a (ENSSFOG00015027765)	dipk1c (ENSSFOG00015017827)	afg3l2 (ENSSFOG00015024366)	ENSSFOG00015017886	ENSSFOG00015029786	inhbab (ENSSFOG00015030828)	mplkip (ENSSFOG00015025475)	CDK13 (ENSSFOG00015017932)	ralab (ENSSFOG00015032676)	zgc:55781 (ENSSFOG00015032650)	ENSSFOG00015017978	fbxl7 (ENSSFOG00015033203) #22	IMPA1 (ENSSFOG00015018091)	impa1 (ENSSFOG00015024921)	ENSSFOG00015018142	cdh7a (ENSSFOG00015018193)	DSEL (ENSSFOG00015018404)	ENSSFOG00015018413	tmx3a (ENSSFOG00015018423)	opn4.1 (ENSSFOG00015018440)	PXDC1 (ENSSFOG00015018445)	ENSSFOG00015018456	prpf4bb (ENSSFOG00015018473)	gli3 (ENSSFOG00015018628)	ccr9a (ENSSFOG00015018658)	zgc:136930 (ENSSFOG00015018665)	LZTFL1 (ENSSFOG00015018697)
P. kingsleyae	DUPLICATION
P. kingsleyae	MODERN SPECIES	380				ENSPKIG00000004828	dipk1c (ENSPKIG00000004781)	afg3l2 (ENSPKIG00000004688)	ENSPKIG00000004641	ENSPKIG00000004621	ENSPKIG00000004598	ENSPKIG00000004570	inhbab (ENSPKIG00000004538)	mplkip (ENSPKIG00000004524)	CDK13 (ENSPKIG00000004460)	ralab (ENSPKIG00000004423)	zgc:55781 (ENSPKIG00000004401)	fbxl7 (ENSPKIG00000004380) #22	impa1 (ENSPKIG00000004343)	ENSPKIG00000004292	cdh7a (ENSPKIG00000004239)
P. kingsleyae	MODERN SPECIES	62	fars2 (ENSPKIG00000010545)	ENSPKIG00000010512	LYRM4 (ENSPKIG00000010494)	ENSPKIG00000010480	ENSPKIG00000010450	cyb5a (ENSPKIG00000010426)	ENSPKIG00000010389	DIPK1C (ENSPKIG00000010374)	tubb6 (ENSPKIG00000010354)	ENSPKIG00000010331	eci2 (ENSPKIG00000010287)	inhbaa (ENSPKIG00000010263)	sugct (ENSPKIG00000010227)	CDK13 (ENSPKIG00000010187)	ENSPKIG00000010091	fbxl7 (ENSPKIG00000010043) #22	IMPA1 (ENSPKIG00000010002)	ENSPKIG00000009976	CDH7 (ENSPKIG00000009942)	ENSPKIG00000009909	DSEL (ENSPKIG00000009892)	TMX3 (ENSPKIG00000009848)	PXDC1 (ENSPKIG00000009812)	gli3 (ENSPKIG00000009769)	CCR9 (ENSPKIG00000009754)	lztfl1 (ENSPKIG00000009710)
Elephant shark	MODERN SPECIES	1575	ENSCMIG00000010762	sacm1la (ENSCMIG00000010804)	snrpd1 (ENSCMIG00000010926)	SLC6A20 (ENSCMIG00000010947)	ENSCMIG00000011023	ENSCMIG00000011026	NEK11 (ENSCMIG00000011030)	ASTE1 (ENSCMIG00000011032)	ENSCMIG00000011040	ATP2C1 (ENSCMIG00000011204)	trioa (ENSCMIG00000011808) #15	ENSCMIG00000012097 #16	OTULINL (ENSCMIG00000012101) #16	OTULIN (ENSCMIG00000012106) #18	ankhb (ENSCMIG00000012115) #20	fbxl7 (ENSCMIG00000012134) #22	ENSCMIG00000012137	MARCHF11 (ENSCMIG00000012141) #23	znf622 (ENSCMIG00000012155) #24	RETREG1 (ENSCMIG00000012161) #25	ENSCMIG00000012196 #26	ENSCMIG00000012288	CDH18 (ENSCMIG00000012294)	ENSCMIG00000012310
Cyclostomata	DUPLICATION
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000158009.c #22
Lamprey	MODERN SPECIES	562															ENSPMAG00000004411	ENSPMAG00000004404 #22	tmem169a (ENSPMAG00000004399)	pecr (ENSPMAG00000004368)	ENSPMAG00000004352	ENSPMAG00000004262	abcb8 (ENSPMAG00000004214)	atg9a (ENSPMAG00000004177)	smarcd1 (ENSPMAG00000004147)	paox (ENSPMAG00000004130)	ENSPMAG00000004129	ADAM12 (ENSPMAG00000004117)
Hagfish	MODERN SPECIES	639	ENSEBUG00000009402	ENSEBUG00000013616	ENSEBUG00000015956	ENSEBUG00000010739	ENSEBUG00000009168	ENSEBUG00000010925	ENSEBUG00000013005	ENSEBUG00000003994	ENSEBUG00000008613	ENSEBUG00000014399	ENSEBUG00000013412	ENSEBUG00000011187	ankhb (ENSEBUG00000011035) #20	ENSEBUG00000003910	ENSEBUG00000015732	ENSEBUG00000001594 #22	ENSEBUG00000009885	mlx (ENSEBUG00000005730)	ENSEBUG00000011766	ercc3 (ENSEBUG00000009773)	ENSEBUG00000014867	ENSEBUG00000007272	TRIP13 (ENSEBUG00000005773)	ENSEBUG00000014401	ENSEBUG00000009375	ENSEBUG00000010194	ENSEBUG00000001326
Cyclostomata	ANCESTRAL SPECIES																	ENSGT00940000158009.d #22
Lamprey	MODERN SPECIES	4608																ENSPMAG00000002532 #22
Hagfish	MODERN SPECIES	680	ENSEBUG00000001829	ENSEBUG00000002920	ENSEBUG00000000322	ENSEBUG00000016996	ift20 (ENSEBUG00000016655)	kctd10 (ENSEBUG00000013678)	ENSEBUG00000001865	USP32 (ENSEBUG00000016737)	ENSEBUG00000006359	ENSEBUG00000013899	ENSEBUG00000003369	ENSEBUG00000013058	ENSEBUG00000015185	ENSEBUG00000000897	ENSEBUG00000000990	ENSEBUG00000008355 #22	ccdc47 (ENSEBUG00000002946)	ENSEBUG00000000724	ENSEBUG00000013907	ENSEBUG00000009192	ENSEBUG00000016714	lsm5 (ENSEBUG00000008540)	ENSEBUG00000008780	ENSEBUG00000001787	ENSEBUG00000001884	ENSEBUG00000008453	upp1 (ENSEBUG00000016113)	ENSEBUG00000012387	ENSEBUG00000006979	ENSEBUG00000010183	DCLK3 (ENSEBUG00000004322)