Rodentia	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT01050000247046
Rodentia_B	ANCESTRAL SPECIES	4	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT01050000247046
Myomorpha	ANCESTRAL SPECIES	5	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT01050000247046
Muroidea	ANCESTRAL SPECIES	4	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT01050000247046
Muroidea_A	ANCESTRAL SPECIES	11	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT01050000247046
Cricetidae	ANCESTRAL SPECIES	11	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a.k #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT01050000247046
Cricetidae_B	ANCESTRAL SPECIES	37	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a.k #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37	ENSGT01050000247046	ENSGT00390000007153.a.a
Prairie vole	MODERN SPECIES	6	Atpsckmt (ENSMOCG00000010214) #7	Cct5 (ENSMOCG00000011025) #8	Cmbl (ENSMOCG00000000662) #9	Marchf6 (ENSMOCG00000005447) #10	Ropn1l (ENSMOCG00000019170) #11	Ankrd33b (ENSMOCG00000012066) #12	Dap (ENSMOCG00000007932) #13	ENSMOCG00000008873 #14	Ctnnd2 (ENSMOCG00000011727) #15	Dnah5 (ENSMOCG00000002151) #16	Trio (ENSMOCG00000017194) #17	Otulinl (ENSMOCG00000014807) #18	Otulin (ENSMOCG00000018018) #19	Ank (ENSMOCG00000015187) #20	ENSMOCG00000003518 #21	Fbxl7 (ENSMOCG00000022587) #22	Marchf11 (ENSMOCG00000005112) #23	ENSMOCG00000014111 #24	Retreg1 (ENSMOCG00000022687) #25	Myo10 (ENSMOCG00000001624) #26	Basp1 (ENSMOCG00000001482) #27	Cdh18 (ENSMOCG00000016086) #28	Cdh12 (ENSMOCG00000001651) #29	Cdh10 (ENSMOCG00000012651) #30	Cdh9 (ENSMOCG00000000711) #31	ENSMOCG00000009877 #32	ENSMOCG00000009545 #33	Cdh6 (ENSMOCG00000016401) #34	Drosha (ENSMOCG00000015044) #35	6030458C11Rik (ENSMOCG00000021733) #36	ENSMOCG00000022274 #37
Northern American deer mouse	MODERN SPECIES	6	ENSPEMG00000022370 #8	Cmbl (ENSPEMG00000023901) #9	Marchf6 (ENSPEMG00000023219) #10	Ropn1l (ENSPEMG00000021994) #11	Ankrd33b (ENSPEMG00000022398) #12	Dap (ENSPEMG00000030453) #13	Ctnnd2 (ENSPEMG00000023801) #15	ENSPEMG00000030112	Dnah5 (ENSPEMG00000021827) #16	Trio (ENSPEMG00000023464) #17	ENSPEMG00000029934	Otulinl (ENSPEMG00000021713) #18	Otulin (ENSPEMG00000021987) #19	Ank (ENSPEMG00000021948) #20	ENSPEMG00000028925	Fbxl7 (ENSPEMG00000019691) #22	Marchf11 (ENSPEMG00000020080) #23	Zfp622 (ENSPEMG00000019901) #24	Retreg1 (ENSPEMG00000000999) #25	Myo10 (ENSPEMG00000019555) #26	Cdh18 (ENSPEMG00000019662) #28	Cdh12 (ENSPEMG00000019791) #29	ENSPEMG00000009396	ENSPEMG00000025057 #30	Cdh6 (ENSPEMG00000000108) #34	ENSPEMG00000030570	Drosha (ENSPEMG00000000607) #35	6030458C11Rik (ENSPEMG00000010726) #36	Pdzd2 (ENSPEMG00000020494) #37	Golph3 (ENSPEMG00000028341)	Mtmr12 (ENSPEMG00000010153)
Cricetinae	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a.k #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT00390000007153.a.a
Golden Hamster	MODERN SPECIES	729											Dnah5 (ENSMAUG00000000528) #16	Trio (ENSMAUG00000006892) #17	ENSMAUG00000007540 #18	Otulin (ENSMAUG00000004691) #19	Ank (ENSMAUG00000000192) #20	Fbxl7 (ENSMAUG00000002455) #22	Marchf11 (ENSMAUG00000019378) #23	Zfp622 (ENSMAUG00000010395) #24	Retreg1 (ENSMAUG00000000079) #25	Myo10 (ENSMAUG00000018170) #26	Cdh18 (ENSMAUG00000016819) #28	Cdh12 (ENSMAUG00000014852) #29
Chinese hamster chok1gshd	MODERN SPECIES	1	Cmbl (ENSCGRG00001002936) #9	Marchf6 (ENSCGRG00001001973) #10	Ropn1l (ENSCGRG00001000818) #11	Ankrd33b (ENSCGRG00001016919) #12	Dap (ENSCGRG00001007075) #13	ENSCGRG00001009079	Ctnnd2 (ENSCGRG00001012344) #15	ENSCGRG00001009256	ENSCGRG00001008572	Dnah5 (ENSCGRG00001002726) #16	ENSCGRG00001007408	Trio (ENSCGRG00001018514) #17	Otulinl (ENSCGRG00001013918) #18	Otulin (ENSCGRG00001009097) #19	Ank (ENSCGRG00001007186) #20	Fbxl7 (ENSCGRG00001002330) #22	Marchf11 (ENSCGRG00001000995) #23	Zfp622 (ENSCGRG00001024661) #24	Retreg1 (ENSCGRG00001003409) #25	Myo10 (ENSCGRG00001006922) #26	Basp1 (ENSCGRG00001010849) #27	Cdh18 (ENSCGRG00001012079) #28	Cdh12 (ENSCGRG00001015709) #29	Cdh10 (ENSCGRG00001001483) #30	Cdh9 (ENSCGRG00001007635) #31	ENSCGRG00001006251	ENSCGRG00001013307	Cdh6 (ENSCGRG00001014466) #34	Drosha (ENSCGRG00001008885) #35	6030458C11Rik (ENSCGRG00001024155) #36	ENSCGRG00001007160
Murinae	ANCESTRAL SPECIES	24	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37	ENSGT00390000007153.a.a	ENSGT00860000135775
Mus	ANCESTRAL SPECIES	22	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37	ENSGT00390000007153.a.a	ENSGT00860000135775
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00860000135677	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a.i #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37	ENSGT00390000007153.a.a
Ryukyu mouse	MODERN SPECIES	6	Sema5a (MGP_CAROLIEiJ_G0019715)	Tas2r119 (MGP_CAROLIEiJ_G0019714)	Atpsckmt (MGP_CAROLIEiJ_G0019713) #7	Cct5 (MGP_CAROLIEiJ_G0019712) #8	Cmbl (MGP_CAROLIEiJ_G0019711) #9	Marchf6 (MGP_CAROLIEiJ_G0019710) #10	Ropn1l (MGP_CAROLIEiJ_G0019709) #11	Ankrd33b (MGP_CAROLIEiJ_G0019708) #12	Dap (MGP_CAROLIEiJ_G0019707) #13	Ctnnd2 (MGP_CAROLIEiJ_G0019706) #15	Dnah5 (MGP_CAROLIEiJ_G0019705) #16	Trio (MGP_CAROLIEiJ_G0019704) #17	Otulinl (MGP_CAROLIEiJ_G0019703) #18	Otulin (MGP_CAROLIEiJ_G0019702) #19	Ank (MGP_CAROLIEiJ_G0019701) #20	Fbxl7 (MGP_CAROLIEiJ_G0019700) #22	MGP_CAROLIEiJ_G0019699 #23	Zfp622 (MGP_CAROLIEiJ_G0019698) #24	Retreg1 (MGP_CAROLIEiJ_G0019697) #25	Myo10 (MGP_CAROLIEiJ_G0019696) #26	MGP_CAROLIEiJ_G0019695	Basp1 (MGP_CAROLIEiJ_G0019694) #27	MGP_CAROLIEiJ_G0019693	Cdh18 (MGP_CAROLIEiJ_G0019692) #28	Cdh12 (MGP_CAROLIEiJ_G0019691) #29	Cdh10 (MGP_CAROLIEiJ_G0019690) #30	Cdh9 (MGP_CAROLIEiJ_G0019689) #31	Cdh6 (MGP_CAROLIEiJ_G0019688) #34	Drosha (MGP_CAROLIEiJ_G0019687) #35	6030458C11Rik (MGP_CAROLIEiJ_G0019686) #36	Pdzd2 (MGP_CAROLIEiJ_G0019685) #37
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00860000135677	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00390000005330.cb	ENSGT00940000154187.a.a.i #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37
Mus_C	ANCESTRAL SPECIES	28	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00860000135677	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00390000005330.cb	ENSGT00940000154187.a.a.i #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37
Steppe mouse	MODERN SPECIES	3249											Dnah5 (ENSMSIG00000020379) #16	Trio (ENSMSIG00000020539) #17	Otulinl (ENSMSIG00000020899) #18	Otulin (ENSMSIG00000020973) #19	Ank (ENSMSIG00000020995) #20	Fbxl7 (ENSMSIG00000021074) #22	Marchf11 (ENSMSIG00000021111) #23	ENSMSIG00000021134	ENSMSIG00000021139	Zfp622 (ENSMSIG00000021146) #24	Retreg1 (ENSMSIG00000021158) #25	Myo10 (ENSMSIG00000021199) #26	ENSMSIG00000021319
spretus	MODERN SPECIES	6	Atpsckmt (MGP_SPRETEiJ_G0020609) #7	Cct5 (MGP_SPRETEiJ_G0020608) #8	Cmbl (MGP_SPRETEiJ_G0020607) #9	Marchf6 (MGP_SPRETEiJ_G0020606) #10	Ropn1l (MGP_SPRETEiJ_G0020605) #11	Ankrd33b (MGP_SPRETEiJ_G0020604) #12	MGP_SPRETEiJ_G0020603	Dap (MGP_SPRETEiJ_G0020602) #13	Ctnnd2 (MGP_SPRETEiJ_G0020601) #15	Dnah5 (MGP_SPRETEiJ_G0020600) #16	MGP_SPRETEiJ_G0020599	Trio (MGP_SPRETEiJ_G0020598) #17	Otulinl (MGP_SPRETEiJ_G0020597) #18	Otulin (MGP_SPRETEiJ_G0020596) #19	Ank (MGP_SPRETEiJ_G0020595) #20	Fbxl7 (MGP_SPRETEiJ_G0020594) #22	Marchf11 (MGP_SPRETEiJ_G0020593) #23	Zfp622 (MGP_SPRETEiJ_G0020592) #24	Retreg1 (MGP_SPRETEiJ_G0020591) #25	Myo10 (MGP_SPRETEiJ_G0020590) #26	MGP_SPRETEiJ_G0020589	Basp1 (MGP_SPRETEiJ_G0020588) #27	MGP_SPRETEiJ_G0020587	Cdh18 (MGP_SPRETEiJ_G0020586) #28	Cdh12 (MGP_SPRETEiJ_G0020585) #29	Acot10 (MGP_SPRETEiJ_G0020584)	Cdh10 (MGP_SPRETEiJ_G0020583) #30	Cdh9 (MGP_SPRETEiJ_G0020582) #31	Cdh6 (MGP_SPRETEiJ_G0020581) #34	Drosha (MGP_SPRETEiJ_G0020580) #35	6030458C11Rik (MGP_SPRETEiJ_G0020579) #36
Mouse	MODERN SPECIES	6	Sema5a (ENSMUSG00000022231)	Tas2r119 (ENSMUSG00000045267)	Atpsckmt (ENSMUSG00000039065) #7	Cct5 (ENSMUSG00000022234) #8	Cmbl (ENSMUSG00000022235) #9	Marchf6 (ENSMUSG00000039100) #10	Ropn1l (ENSMUSG00000022236) #11	Ankrd33b (ENSMUSG00000022237) #12	Dap (ENSMUSG00000039168) #13	Ctnnd2 (ENSMUSG00000022240) #15	Dnah5 (ENSMUSG00000022262) #16	Trio (ENSMUSG00000022263) #17	Otulinl (ENSMUSG00000056069) #18	Otulin (ENSMUSG00000046034) #19	Ank (ENSMUSG00000022265) #20	Fbxl7 (ENSMUSG00000043556) #22	Marchf11 (ENSMUSG00000022269) #23	Zfp622 (ENSMUSG00000052253) #24	Retreg1 (ENSMUSG00000022270) #25	Myo10 (ENSMUSG00000022272) #26	Basp1 (ENSMUSG00000045763) #27	Cdh18 (ENSMUSG00000040420) #28	Acot10 (ENSMUSG00000047565)	Cdh12 (ENSMUSG00000040452) #29	Cdh10 (ENSMUSG00000022321) #30	Cdh9 (ENSMUSG00000025370) #31	Cdh6 (ENSMUSG00000039385) #34	Drosha (ENSMUSG00000022191) #35	6030458C11Rik (ENSMUSG00000022195) #36	Pdzd2 (ENSMUSG00000022197) #37	Golph3 (ENSMUSG00000022200)
Shrew mouse	MODERN SPECIES	2	MGP_PahariEiJ_G0016091	Tas2r119 (MGP_PahariEiJ_G0016090)	Atpsckmt (MGP_PahariEiJ_G0016089) #7	MGP_PahariEiJ_G0016088 #8	Cmbl (MGP_PahariEiJ_G0016087) #9	Marchf6 (MGP_PahariEiJ_G0016086) #10	Ropn1l (MGP_PahariEiJ_G0016085) #11	Ankrd33b (MGP_PahariEiJ_G0016084) #12	Dap (MGP_PahariEiJ_G0016083) #13	Ctnnd2 (MGP_PahariEiJ_G0016082) #15	Dnah5 (MGP_PahariEiJ_G0016081) #16	Trio (MGP_PahariEiJ_G0016080) #17	Otulinl (MGP_PahariEiJ_G0016079) #18	Otulin (MGP_PahariEiJ_G0016078) #19	Ank (MGP_PahariEiJ_G0016077) #20	Fbxl7 (MGP_PahariEiJ_G0016076) #22	Marchf11 (MGP_PahariEiJ_G0016075) #23	Zfp622 (MGP_PahariEiJ_G0016074) #24	Retreg1 (MGP_PahariEiJ_G0016073) #25	Myo10 (MGP_PahariEiJ_G0016072) #26	MGP_PahariEiJ_G0016071	Basp1 (MGP_PahariEiJ_G0016070) #27	MGP_PahariEiJ_G0016069	Cdh18 (MGP_PahariEiJ_G0016068) #28	Cdh12 (MGP_PahariEiJ_G0016067) #29	Cdh10 (MGP_PahariEiJ_G0016066) #30	Cdh9 (MGP_PahariEiJ_G0016065) #31	Cdh6 (MGP_PahariEiJ_G0016064) #34	Drosha (MGP_PahariEiJ_G0016063) #35	6030458C11Rik (MGP_PahariEiJ_G0016062) #36	Pdzd2 (MGP_PahariEiJ_G0016061) #37
Rat	MODERN SPECIES	11	Tas2r119 (ENSRNOG00000011963)	Atpsckmt (ENSRNOG00000022347) #7	Cct5 (ENSRNOG00000011632) #8	Cmbl (ENSRNOG00000011260) #9	Marchf6 (ENSRNOG00000011066) #10	Ropn1l (ENSRNOG00000042781) #11	Ankrd33b (ENSRNOG00000010888) #12	Dap (ENSRNOG00000010747)	Ctnnd2 (ENSRNOG00000010649) #15	Dnah5 (ENSRNOG00000048363) #16	Trio (ENSRNOG00000012148) #17	Otulinl (ENSRNOG00000012109) #18	AABR07008940.1 (ENSRNOG00000011997)	Otulin (ENSRNOG00000012017) #19	Ankh (ENSRNOG00000010960) #20	Fbxl7 (ENSRNOG00000024433) #22	Marchf11 (ENSRNOG00000024461) #23	AABR07008911.1 (ENSRNOG00000056969)	Zfp622 (ENSRNOG00000010589) #24	Myo10 (ENSRNOG00000010161) #26	Cwc15-ps3 (ENSRNOG00000025157)	Basp1 (ENSRNOG00000066065) #27	Cdh18 (ENSRNOG00000010535) #28	ENSRNOG00000068483	AABR07008724.1 (ENSRNOG00000019037)	Cdh12 (ENSRNOG00000026392) #29	ENSRNOG00000068443	ENSRNOG00000066871	Cdh10 (ENSRNOG00000009771) #30	Cdh9 (ENSRNOG00000033837) #31	AABR07008608.1 (ENSRNOG00000055439)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1778									Dnah5 (ENSNGAG00000000799) #16	Trio (ENSNGAG00000022178) #17	ENSNGAG00000007346	Otulinl (ENSNGAG00000022804) #18	Otulin (ENSNGAG00000021789) #19	Ank (ENSNGAG00000021196) #20	ENSNGAG00000020279	Fbxl7 (ENSNGAG00000018840) #22	Marchf11 (ENSNGAG00000016639) #23	Zfp622 (ENSNGAG00000012958) #24	Retreg1 (ENSNGAG00000011943) #25	Myo10 (ENSNGAG00000013287) #26	ENSNGAG00000004229	Basp1 (ENSNGAG00000001116) #27	Cdh18 (ENSNGAG00000022603) #28
Lesser Egyptian jerboa	MODERN SPECIES	48	Dctn4 (ENSJJAG00000021369)	Smim3 (ENSJJAG00000011996)	Fam170a (ENSJJAG00000003910)	ENSJJAG00000016100	ENSJJAG00000006199	Prr16 (ENSJJAG00000016970)	Ankrd33b (ENSJJAG00000016371) #12	Dap (ENSJJAG00000022373) #13	ENSJJAG00000014543	Ctnnd2 (ENSJJAG00000015243) #15	Dnah5 (ENSJJAG00000021504) #16	Trio (ENSJJAG00000019719) #17	Otulinl (ENSJJAG00000019612) #18	Otulin (ENSJJAG00000021711) #19	Ank (ENSJJAG00000010626) #20	Fbxl7 (ENSJJAG00000013915) #22	ENSJJAG00000019583	Zfp622 (ENSJJAG00000000941) #24	Retreg1 (ENSJJAG00000007779) #25	Myo10 (ENSJJAG00000013696) #26	Cdh18 (ENSJJAG00000018092) #28	Cdh12 (ENSJJAG00000018602) #29	ENSJJAG00000014963	ENSJJAG00000014686	ENSJJAG00000011202	Cdh10 (ENSJJAG00000013847) #30	ENSJJAG00000020446	Cdh9 (ENSJJAG00000006219) #31	Cdh6 (ENSJJAG00000022038) #34	Drosha (ENSJJAG00000019758) #35	6030458C11Rik (ENSJJAG00000010209) #36
Kangaroo rat	MODERN SPECIES	340	Fastkd3 (ENSDORG00000028341)	ENSDORG00000030090	Sema5a (ENSDORG00000009214)	Cct5 (ENSDORG00000008787) #8	Cmbl (ENSDORG00000008783) #9	Marchf6 (ENSDORG00000009942) #10	Ropn1l (ENSDORG00000004133) #11	Dap (ENSDORG00000023386) #13	ENSDORG00000028473 #15	ENSDORG00000029046	Dnah5 (ENSDORG00000012492) #16	Trio (ENSDORG00000011919) #17	Otulinl (ENSDORG00000003148) #18	Otulin (ENSDORG00000003904) #19	Ank (ENSDORG00000001662) #20	Fbxl7 (ENSDORG00000030041) #22	Marchf11 (ENSDORG00000007351) #23	Zfp622 (ENSDORG00000000939) #24	Retreg1 (ENSDORG00000000940) #25	Myo10 (ENSDORG00000005883) #26	ENSDORG00000026313	Cdh18 (ENSDORG00000009490) #28	ENSDORG00000001664 ##34	Cdh10 (ENSDORG00000007213) #30	Cdh9 (ENSDORG00000002684) #31	ENSDORG00000028346
Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT01050000247046
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00940000157749 #37	ENSGT01050000247046	ENSGT00390000007153.a.a
Long-tailed chinchilla	MODERN SPECIES	133		ENSCLAG00000009724	ATPSCKMT (ENSCLAG00000007449) #7	CCT5 (ENSCLAG00000008074) #8	CMBL (ENSCLAG00000012029) #9	MARCHF6 (ENSCLAG00000013772) #10	ROPN1L (ENSCLAG00000007892) #11	ANKRD33B (ENSCLAG00000008394) #12	DAP (ENSCLAG00000008486) #13	CTNND2 (ENSCLAG00000010220) #15	DNAH5 (ENSCLAG00000013894) #16	TRIO (ENSCLAG00000009822) #17	OTULINL (ENSCLAG00000015072) #18	OTULIN (ENSCLAG00000012182) #19	ANKH (ENSCLAG00000011007) #20	FBXL7 (ENSCLAG00000014128) #22	MARCHF11 (ENSCLAG00000010027) #23	ZNF622 (ENSCLAG00000011494) #24	RETREG1 (ENSCLAG00000014211) #25	MYO10 (ENSCLAG00000014503) #26	BASP1 (ENSCLAG00000015086) #27	CDH18 (ENSCLAG00000011951) #28	CDH12 (ENSCLAG00000013527) #29	CDH10 (ENSCLAG00000011884) #30	CDH9 (ENSCLAG00000008482) #31	CDH6 (ENSCLAG00000007448) #34	DROSHA (ENSCLAG00000013048) #35	C5orf22 (ENSCLAG00000007169) #36	PDZD2 (ENSCLAG00000007256) #37	GOLPH3 (ENSCLAG00000008270)	MTMR12 (ENSCLAG00000008003)
Degu	MODERN SPECIES	248									ENSODEG00000018704	TRIO (ENSODEG00000001585) #17	ENSODEG00000001372 #18	OTULIN (ENSODEG00000001281) #19	ANKH (ENSODEG00000001253) #20	ENSODEG00000018653	ENSODEG00000001227	FBXL7 (ENSODEG00000001152) #22	MARCHF11 (ENSODEG00000001708) #23	ENSODEG00000001594 #24	RETREG1 (ENSODEG00000001553) #25	ENSODEG00000001536	MYO10 (ENSODEG00000000934) #26	ENSODEG00000000634
Guinea pig	MODERN SPECIES	55	ENSCPOG00000005307	ENSCPOG00000038189	ENSCPOG00000039180	ATPSCKMT (ENSCPOG00000002022) #7	CCT5 (ENSCPOG00000002023) #8	CMBL (ENSCPOG00000002024) #9	MARCHF6 (ENSCPOG00000000213) #10	ROPN1L (ENSCPOG00000032598) #11	ENSCPOG00000040408 #13	CTNND2 (ENSCPOG00000023221) #15	DNAH5 (ENSCPOG00000015078) #16	TRIO (ENSCPOG00000009097) #17	OTULINL (ENSCPOG00000008574) #18	OTULIN (ENSCPOG00000012126) #19	ANKH (ENSCPOG00000012339) #20	FBXL7 (ENSCPOG00000013129) #22	MARCHF11 (ENSCPOG00000026502) #23	ZNF622 (ENSCPOG00000002276) #24	RETREG1 (ENSCPOG00000002278) #25	MYO10 (ENSCPOG00000004645) #26	BASP1 (ENSCPOG00000040611) #27	CDH18 (ENSCPOG00000015587) #28
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000004654 #11	ANKRD33B (ENSHGLG00000036584) #12	ENSHGLG00000015867	ENSHGLG00000007547 #15	ENSHGLG00000032946	ENSHGLG00000034637	ENSHGLG00000017230	ENSHGLG00000034661	ENSHGLG00000004104 #16	ENSHGLG00000004346 #17	OTULINL (ENSHGLG00000007364) #18	ENSHGLG00000040674	OTULIN (ENSHGLG00000008326) #19	ANKH (ENSHGLG00000009005) #20	ENSHGLG00000049744	FBXL7 (ENSHGLG00000039624) #22	ENSHGLG00000005413	ENSHGLG00000047002 #23	ENSHGLG00000042572	ZNF622 (ENSHGLG00000040123) #24	RETREG1 (ENSHGLG00000033002) #25	MYO10 (ENSHGLG00000006481) #26	ENSHGLG00000041373 #27	ENSHGLG00000040982	ENSHGLG00000000095 #30	ENSHGLG00000011908	ENSHGLG00000003890	ENSHGLG00000003675 #31	ENSHGLG00000036098	ENSHGLG00000040270	ENSHGLG00000019942
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b #29	ENSGT00940000154187.a.a #30	ENSGT00940000160496.b #31	ENSGT00940000154673.a #34	ENSGT00730000111052 #35	ENSGT00390000001801 #36	ENSGT00910000144505	ENSGT00940000157749 #37	ENSGT00390000007153.a.a
Marmotini	ANCESTRAL SPECIES	75	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23
Alpin marmot	MODERN SPECIES	27	CCT5 (ENSMMMG00000016876) #8	CMBL (ENSMMMG00000016882) #9	MARCHF6 (ENSMMMG00000016892) #10	ROPN1L (ENSMMMG00000016907) #11	ANKRD33B (ENSMMMG00000016918) #12	DAP (ENSMMMG00000016933) #13	CTNND2 (ENSMMMG00000016961) #15	ENSMMMG00000017027	ENSMMMG00000017037	DNAH5 (ENSMMMG00000017061) #16	ENSMMMG00000017112 #17	ENSMMMG00000017138 #17	OTULINL (ENSMMMG00000017171) #18	OTULIN (ENSMMMG00000017186) #19	ANKH (ENSMMMG00000017192) #20	FBXL7 (ENSMMMG00000017213) #22	ENSMMMG00000017221	CCDC152 (ENSMMMG00000017224)	GHR (ENSMMMG00000017240)	FBXO4 (ENSMMMG00000017291)	RIMOC1 (ENSMMMG00000017296)	ENSMMMG00000017300	PLCXD3 (ENSMMMG00000017352)	C6 (ENSMMMG00000017358)	MROH2B (ENSMMMG00000017369)	ENSMMMG00000017396	C7 (ENSMMMG00000017398)	CARD6 (ENSMMMG00000017776)	RPL37 (ENSMMMG00000017779)	PRKAA1 (ENSMMMG00000017787)	TTC33 (ENSMMMG00000017819)
Marmotini_b	ANCESTRAL SPECIES	157	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a #7	ENSGT00550000074988 #8	ENSGT00390000000183 #9	ENSGT00940000155171.a.b #10	ENSGT00390000012731.a.a #11	ENSGT00500000044852.a #12	ENSGT00940000154574.c #13	ENSGT00940000154952.a.b #15	ENSGT00940000155533.d #16	ENSGT00940000154766.a.a #17	ENSGT00390000009802.a #18	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #23
Squirrel	MODERN SPECIES	265											DNAH5 (ENSSTOG00000012887) #16	TRIO (ENSSTOG00000012982) #17	OTULINL (ENSSTOG00000012967) #18	OTULIN (ENSSTOG00000014627) #19	ANKH (ENSSTOG00000014630) #20	FBXL7 (ENSSTOG00000026709) #22	MARCHF11 (ENSSTOG00000015947) #23
Arctic ground squirrel	MODERN SPECIES	101									CTNND2 (ENSUPAG00010018407) #15	DNAH5 (ENSUPAG00010018491) #16	TRIO (ENSUPAG00010018613) #17	OTULINL (ENSUPAG00010018805) #18	OTULIN (ENSUPAG00010018826) #19	ANKH (ENSUPAG00010018838) #20	ENSUPAG00010018857	FBXL7 (ENSUPAG00010018865) #22	MARCHF11 (ENSUPAG00010018880) #23
Eurasian red squirrel	MODERN SPECIES	15	ATPSCKMT (ENSSVLG00005005707) #7	ENSSVLG00005005577 #8	CMBL (ENSSVLG00005005537) #9	ENSSVLG00005005507	ENSSVLG00005005490 ##10	ROPN1L (ENSSVLG00005005364) #11	ANKRD33B (ENSSVLG00005005329) #12	DAP (ENSSVLG00005005317) #13	CTNND2 (ENSSVLG00005005089) #15	DNAH5 (ENSSVLG00005004822) #16	ENSSVLG00005004695 #17	ENSSVLG00005004640 #17	OTULINL (ENSSVLG00005004612) #18	OTULIN (ENSSVLG00005004587) #19	ANKH (ENSSVLG00005004559) #20	FBXL7 (ENSSVLG00005004530) #22	MARCHF11 (ENSSVLG00005004512) #23	ZNF622 (ENSSVLG00005004487) #24	RETREG1 (ENSSVLG00005004440) #25	MYO10 (ENSSVLG00005004378) #26	ENSSVLG00005004321 #27	ENSSVLG00005004307	CDH18 (ENSSVLG00005004254) #28	ENSSVLG00005004221	ENSSVLG00005004196	CDH12 (ENSSVLG00005010824) #29	ENSSVLG00005010760	ENSSVLG00005010723	ENSSVLG00005010682	CDH10 (ENSSVLG00005010571) #30	ENSSVLG00005010536