Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000004654 #7	ANKRD33B (ENSHGLG00000036584) #8	ENSHGLG00000015867 #9	ENSHGLG00000007547 #10	ENSHGLG00000032946 #11	ENSHGLG00000034637 #12	ENSHGLG00000017230 #13	ENSHGLG00000034661 #14	ENSHGLG00000004104 #15	ENSHGLG00000004346 #16	OTULINL (ENSHGLG00000007364) #17	ENSHGLG00000040674 #18	OTULIN (ENSHGLG00000008326) #19	ANKH (ENSHGLG00000009005) #20	ENSHGLG00000049744 #21	FBXL7 (ENSHGLG00000039624) #22	ENSHGLG00000005413 #23	ENSHGLG00000047002 #24	ENSHGLG00000042572 #25	ZNF622 (ENSHGLG00000040123) #26	RETREG1 (ENSHGLG00000033002) #27	MYO10 (ENSHGLG00000006481) #28	ENSHGLG00000041373 #29	ENSHGLG00000040982 #30	ENSHGLG00000000095 #31	ENSHGLG00000011908 #32	ENSHGLG00000003890 #33	ENSHGLG00000003675 #34	ENSHGLG00000036098 #35	ENSHGLG00000040270 #36	ENSHGLG00000019942 #37
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Long-tailed chinchilla	MODERN SPECIES	133		ENSCLAG00000009724	ATPSCKMT (ENSCLAG00000007449)	CCT5 (ENSCLAG00000008074)	CMBL (ENSCLAG00000012029)	MARCHF6 (ENSCLAG00000013772)	ROPN1L (ENSCLAG00000007892) #7	ANKRD33B (ENSCLAG00000008394) #8	DAP (ENSCLAG00000008486)	CTNND2 (ENSCLAG00000010220) #10	DNAH5 (ENSCLAG00000013894) #15	TRIO (ENSCLAG00000009822) #16	OTULINL (ENSCLAG00000015072) #17	OTULIN (ENSCLAG00000012182) #19	ANKH (ENSCLAG00000011007) #20	FBXL7 (ENSCLAG00000014128) #22	MARCHF11 (ENSCLAG00000010027) #24	ZNF622 (ENSCLAG00000011494) #26	RETREG1 (ENSCLAG00000014211) #27	MYO10 (ENSCLAG00000014503) #28	BASP1 (ENSCLAG00000015086) #29	CDH18 (ENSCLAG00000011951)	CDH12 (ENSCLAG00000013527) ##31	CDH10 (ENSCLAG00000011884) #31	CDH9 (ENSCLAG00000008482) #34	CDH6 (ENSCLAG00000007448)	DROSHA (ENSCLAG00000013048)	C5orf22 (ENSCLAG00000007169)	PDZD2 (ENSCLAG00000007256)	GOLPH3 (ENSCLAG00000008270)	MTMR12 (ENSCLAG00000008003)
Degu	MODERN SPECIES	248									ENSODEG00000018704	TRIO (ENSODEG00000001585) #16	ENSODEG00000001372 #17	OTULIN (ENSODEG00000001281) #19	ANKH (ENSODEG00000001253) #20	ENSODEG00000018653	ENSODEG00000001227	FBXL7 (ENSODEG00000001152) #22	MARCHF11 (ENSODEG00000001708) #24	ENSODEG00000001594 #26	RETREG1 (ENSODEG00000001553) #27	ENSODEG00000001536	MYO10 (ENSODEG00000000934) #28	ENSODEG00000000634
Guinea pig	MODERN SPECIES	55	ENSCPOG00000005307	ENSCPOG00000038189	ENSCPOG00000039180	ATPSCKMT (ENSCPOG00000002022)	CCT5 (ENSCPOG00000002023)	CMBL (ENSCPOG00000002024)	MARCHF6 (ENSCPOG00000000213)	ROPN1L (ENSCPOG00000032598) #7	ENSCPOG00000040408	CTNND2 (ENSCPOG00000023221) #10	DNAH5 (ENSCPOG00000015078) #15	TRIO (ENSCPOG00000009097) #16	OTULINL (ENSCPOG00000008574) #17	OTULIN (ENSCPOG00000012126) #19	ANKH (ENSCPOG00000012339) #20	FBXL7 (ENSCPOG00000013129) #22	MARCHF11 (ENSCPOG00000026502) #24	ZNF622 (ENSCPOG00000002276) #26	RETREG1 (ENSCPOG00000002278) #27	MYO10 (ENSCPOG00000004645) #28	BASP1 (ENSCPOG00000040611) #29	CDH18 (ENSCPOG00000015587)