Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000004654 #7	ANKRD33B (ENSHGLG00000036584) #8	ENSHGLG00000015867 #9	ENSHGLG00000007547 #10	ENSHGLG00000032946 #11	ENSHGLG00000034637 #12	ENSHGLG00000017230 #13	ENSHGLG00000034661 #14	ENSHGLG00000004104 #15	ENSHGLG00000004346 #16	OTULINL (ENSHGLG00000007364) #17	ENSHGLG00000040674 #18	OTULIN (ENSHGLG00000008326) #19	ANKH (ENSHGLG00000009005) #20	ENSHGLG00000049744 #21	FBXL7 (ENSHGLG00000039624) #22	ENSHGLG00000005413 #23	ENSHGLG00000047002 #24	ENSHGLG00000042572 #25	ZNF622 (ENSHGLG00000040123) #26	RETREG1 (ENSHGLG00000033002) #27	MYO10 (ENSHGLG00000006481) #28	ENSHGLG00000041373 #29	ENSHGLG00000040982 #30	ENSHGLG00000000095 #31	ENSHGLG00000011908 #32	ENSHGLG00000003890 #33	ENSHGLG00000003675 #34	ENSHGLG00000036098 #35	ENSHGLG00000040270 #36	ENSHGLG00000019942 #37
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Long-tailed chinchilla	MODERN SPECIES	133		ENSCLAG00000009724	ATPSCKMT (ENSCLAG00000007449)	CCT5 (ENSCLAG00000008074)	CMBL (ENSCLAG00000012029)	MARCHF6 (ENSCLAG00000013772)	ROPN1L (ENSCLAG00000007892) #7	ANKRD33B (ENSCLAG00000008394) #8	DAP (ENSCLAG00000008486)	CTNND2 (ENSCLAG00000010220) #10	DNAH5 (ENSCLAG00000013894) #15	TRIO (ENSCLAG00000009822) #16	OTULINL (ENSCLAG00000015072) #17	OTULIN (ENSCLAG00000012182) #19	ANKH (ENSCLAG00000011007) #20	FBXL7 (ENSCLAG00000014128) #22	MARCHF11 (ENSCLAG00000010027) #24	ZNF622 (ENSCLAG00000011494) #26	RETREG1 (ENSCLAG00000014211) #27	MYO10 (ENSCLAG00000014503) #28	BASP1 (ENSCLAG00000015086) #29	CDH18 (ENSCLAG00000011951)	CDH12 (ENSCLAG00000013527) ##31	CDH10 (ENSCLAG00000011884) #31	CDH9 (ENSCLAG00000008482) #34	CDH6 (ENSCLAG00000007448)	DROSHA (ENSCLAG00000013048)	C5orf22 (ENSCLAG00000007169)	PDZD2 (ENSCLAG00000007256)	GOLPH3 (ENSCLAG00000008270)	MTMR12 (ENSCLAG00000008003)
Degu	MODERN SPECIES	248									ENSODEG00000018704	TRIO (ENSODEG00000001585) #16	ENSODEG00000001372 #17	OTULIN (ENSODEG00000001281) #19	ANKH (ENSODEG00000001253) #20	ENSODEG00000018653	ENSODEG00000001227	FBXL7 (ENSODEG00000001152) #22	MARCHF11 (ENSODEG00000001708) #24	ENSODEG00000001594 #26	RETREG1 (ENSODEG00000001553) #27	ENSODEG00000001536	MYO10 (ENSODEG00000000934) #28	ENSODEG00000000634
Guinea pig	MODERN SPECIES	55	ENSCPOG00000005307	ENSCPOG00000038189	ENSCPOG00000039180	ATPSCKMT (ENSCPOG00000002022)	CCT5 (ENSCPOG00000002023)	CMBL (ENSCPOG00000002024)	MARCHF6 (ENSCPOG00000000213)	ROPN1L (ENSCPOG00000032598) #7	ENSCPOG00000040408	CTNND2 (ENSCPOG00000023221) #10	DNAH5 (ENSCPOG00000015078) #15	TRIO (ENSCPOG00000009097) #16	OTULINL (ENSCPOG00000008574) #17	OTULIN (ENSCPOG00000012126) #19	ANKH (ENSCPOG00000012339) #20	FBXL7 (ENSCPOG00000013129) #22	MARCHF11 (ENSCPOG00000026502) #24	ZNF622 (ENSCPOG00000002276) #26	RETREG1 (ENSCPOG00000002278) #27	MYO10 (ENSCPOG00000004645) #28	BASP1 (ENSCPOG00000040611) #29	CDH18 (ENSCPOG00000015587)
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24	ENSGT00390000018047 #26	ENSGT00940000160746 #27	ENSGT00940000155469 #28	ENSGT00730000111450 #29	ENSGT00940000157512	ENSGT00940000154187.a.b ##31	ENSGT00940000154187.a.a #31	ENSGT00940000160496.b #34	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Marmotini	ANCESTRAL SPECIES	75	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24
Alpin marmot	MODERN SPECIES	27	CCT5 (ENSMMMG00000016876)	CMBL (ENSMMMG00000016882)	MARCHF6 (ENSMMMG00000016892)	ROPN1L (ENSMMMG00000016907) #7	ANKRD33B (ENSMMMG00000016918) #8	DAP (ENSMMMG00000016933)	CTNND2 (ENSMMMG00000016961) #10	ENSMMMG00000017027	ENSMMMG00000017037	DNAH5 (ENSMMMG00000017061) #15	ENSMMMG00000017112 #16	ENSMMMG00000017138 #16	OTULINL (ENSMMMG00000017171) #17	OTULIN (ENSMMMG00000017186) #19	ANKH (ENSMMMG00000017192) #20	FBXL7 (ENSMMMG00000017213) #22	ENSMMMG00000017221	CCDC152 (ENSMMMG00000017224)	GHR (ENSMMMG00000017240)	FBXO4 (ENSMMMG00000017291)	RIMOC1 (ENSMMMG00000017296)	ENSMMMG00000017300	PLCXD3 (ENSMMMG00000017352)	C6 (ENSMMMG00000017358)	MROH2B (ENSMMMG00000017369)	ENSMMMG00000017396	C7 (ENSMMMG00000017398)	CARD6 (ENSMMMG00000017776)	RPL37 (ENSMMMG00000017779)	PRKAA1 (ENSMMMG00000017787)	TTC33 (ENSMMMG00000017819)
Marmotini_b	ANCESTRAL SPECIES	157	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a #7	ENSGT00500000044852.a #8	ENSGT00940000154574.c	ENSGT00940000154952.a.b #10	ENSGT00940000155533.d #15	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #19	ENSGT00390000012189 #20	ENSGT00940000158009 #22	ENSGT00940000160025 #24
Squirrel	MODERN SPECIES	265											DNAH5 (ENSSTOG00000012887) #15	TRIO (ENSSTOG00000012982) #16	OTULINL (ENSSTOG00000012967) #17	OTULIN (ENSSTOG00000014627) #19	ANKH (ENSSTOG00000014630) #20	FBXL7 (ENSSTOG00000026709) #22	MARCHF11 (ENSSTOG00000015947) #24
Arctic ground squirrel	MODERN SPECIES	101									CTNND2 (ENSUPAG00010018407) #10	DNAH5 (ENSUPAG00010018491) #15	TRIO (ENSUPAG00010018613) #16	OTULINL (ENSUPAG00010018805) #17	OTULIN (ENSUPAG00010018826) #19	ANKH (ENSUPAG00010018838) #20	ENSUPAG00010018857	FBXL7 (ENSUPAG00010018865) #22	MARCHF11 (ENSUPAG00010018880) #24
Eurasian red squirrel	MODERN SPECIES	15	ATPSCKMT (ENSSVLG00005005707)	ENSSVLG00005005577	CMBL (ENSSVLG00005005537)	ENSSVLG00005005507	ENSSVLG00005005490	ROPN1L (ENSSVLG00005005364) #7	ANKRD33B (ENSSVLG00005005329) #8	DAP (ENSSVLG00005005317)	CTNND2 (ENSSVLG00005005089) #10	DNAH5 (ENSSVLG00005004822) #15	ENSSVLG00005004695 #16	ENSSVLG00005004640 #16	OTULINL (ENSSVLG00005004612) #17	OTULIN (ENSSVLG00005004587) #19	ANKH (ENSSVLG00005004559) #20	FBXL7 (ENSSVLG00005004530) #22	MARCHF11 (ENSSVLG00005004512) #24	ZNF622 (ENSSVLG00005004487) #26	RETREG1 (ENSSVLG00005004440) #27	MYO10 (ENSSVLG00005004378) #28	ENSSVLG00005004321 #29	ENSSVLG00005004307	CDH18 (ENSSVLG00005004254)	ENSSVLG00005004221	ENSSVLG00005004196	CDH12 (ENSSVLG00005010824) ##31	ENSSVLG00005010760	ENSSVLG00005010723	ENSSVLG00005010682	CDH10 (ENSSVLG00005010571) #31	ENSSVLG00005010536