Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000158036	ENSGT01100000263477.E #9	ENSGT00390000014771.a #10	ENSGT00550000074988 #11	ENSGT00390000000183 #12	ENSGT00940000155171.a.b #13	ENSGT00390000012731.a.a #14	ENSGT00500000044852.a	ENSGT00940000154574.c #15	ENSGT00940000154952.a.b #16	ENSGT00940000155533.d #17	ENSGT00940000154766.a.a #18	ENSGT00390000009802.a #19	ENSGT00390000009802.b #20	ENSGT00390000012189 #21	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Guinea pig	MODERN SPECIES	55	ENSCPOG00000005307 #7	ENSCPOG00000038189 #8	ENSCPOG00000039180 #9	ATPSCKMT (ENSCPOG00000002022) #10	CCT5 (ENSCPOG00000002023) #11	CMBL (ENSCPOG00000002024) #12	MARCHF6 (ENSCPOG00000000213) #13	ROPN1L (ENSCPOG00000032598) #14	ENSCPOG00000040408 #15	CTNND2 (ENSCPOG00000023221) #16	DNAH5 (ENSCPOG00000015078) #17	TRIO (ENSCPOG00000009097) #18	OTULINL (ENSCPOG00000008574) #19	OTULIN (ENSCPOG00000012126) #20	ANKH (ENSCPOG00000012339) #21	FBXL7 (ENSCPOG00000013129) #22	MARCHF11 (ENSCPOG00000026502) #23	ZNF622 (ENSCPOG00000002276) #24	RETREG1 (ENSCPOG00000002278) #25	MYO10 (ENSCPOG00000004645) #26	BASP1 (ENSCPOG00000040611) #27	CDH18 (ENSCPOG00000015587) #28
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a #10	ENSGT00550000074988 #11	ENSGT00390000000183 #12	ENSGT00940000155171.a.b #13	ENSGT00390000012731.a.a #14	ENSGT00500000044852.a	ENSGT00940000154574.c #15	ENSGT00940000154952.a.b #16	ENSGT00940000155533.d #17	ENSGT00940000154766.a.a #18	ENSGT00390000009802.a #19	ENSGT00390000009802.b #20	ENSGT00390000012189 #21	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #26	ENSGT00730000111450 #27	ENSGT00940000157512 #28	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Long-tailed chinchilla	MODERN SPECIES	133		ENSCLAG00000009724	ATPSCKMT (ENSCLAG00000007449) #10	CCT5 (ENSCLAG00000008074) #11	CMBL (ENSCLAG00000012029) #12	MARCHF6 (ENSCLAG00000013772) #13	ROPN1L (ENSCLAG00000007892) #14	ANKRD33B (ENSCLAG00000008394)	DAP (ENSCLAG00000008486) #15	CTNND2 (ENSCLAG00000010220) #16	DNAH5 (ENSCLAG00000013894) #17	TRIO (ENSCLAG00000009822) #18	OTULINL (ENSCLAG00000015072) #19	OTULIN (ENSCLAG00000012182) #20	ANKH (ENSCLAG00000011007) #21	FBXL7 (ENSCLAG00000014128) #22	MARCHF11 (ENSCLAG00000010027) #23	ZNF622 (ENSCLAG00000011494) #24	RETREG1 (ENSCLAG00000014211) #25	MYO10 (ENSCLAG00000014503) #26	BASP1 (ENSCLAG00000015086) #27	CDH18 (ENSCLAG00000011951) #28	CDH12 (ENSCLAG00000013527)	CDH10 (ENSCLAG00000011884)	CDH9 (ENSCLAG00000008482)	CDH6 (ENSCLAG00000007448)	DROSHA (ENSCLAG00000013048)	C5orf22 (ENSCLAG00000007169)	PDZD2 (ENSCLAG00000007256)	GOLPH3 (ENSCLAG00000008270)	MTMR12 (ENSCLAG00000008003)
Degu	MODERN SPECIES	248									ENSODEG00000018704	TRIO (ENSODEG00000001585) #18	ENSODEG00000001372 #19	OTULIN (ENSODEG00000001281) #20	ANKH (ENSODEG00000001253) #21	ENSODEG00000018653	ENSODEG00000001227	FBXL7 (ENSODEG00000001152) #22	MARCHF11 (ENSODEG00000001708) #23	ENSODEG00000001594 #24	RETREG1 (ENSODEG00000001553) #25	ENSODEG00000001536	MYO10 (ENSODEG00000000934) #26	ENSODEG00000000634