Rodentia_A	ANCESTRAL SPECIES	7	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a	ENSGT00500000044852.a	ENSGT00940000154574.c	ENSGT00940000154952.a.b	ENSGT00940000155533.d	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #19	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #27	ENSGT00730000111450	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT01050000247046
Hystricomorpha	ANCESTRAL SPECIES	31	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a	ENSGT00500000044852.a	ENSGT00940000154574.c	ENSGT00940000154952.a.b	ENSGT00940000155533.d	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #19	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #27	ENSGT00730000111450	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_a	ANCESTRAL SPECIES	29	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a	ENSGT00500000044852.a	ENSGT00940000154574.c	ENSGT00940000154952.a.b	ENSGT00940000155533.d	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #19	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #27	ENSGT00730000111450	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	60	ENSGT00940000155822	ENSGT00940000158036	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a	ENSGT00500000044852.a	ENSGT00940000154574.c	ENSGT00940000154952.a.b	ENSGT00940000155533.d	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #19	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #27	ENSGT00730000111450	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00940000157749	ENSGT01050000247046	ENSGT00390000007153.a.a
Degu	MODERN SPECIES	248									ENSODEG00000018704 #15	TRIO (ENSODEG00000001585) #16	ENSODEG00000001372 #17	OTULIN (ENSODEG00000001281) #18	ANKH (ENSODEG00000001253) #19	ENSODEG00000018653 #20	ENSODEG00000001227 #21	FBXL7 (ENSODEG00000001152) #22	MARCHF11 (ENSODEG00000001708) #23	ENSODEG00000001594 #24	RETREG1 (ENSODEG00000001553) #25	ENSODEG00000001536 #26	MYO10 (ENSODEG00000000934) #27	ENSODEG00000000634 #28
Long-tailed chinchilla	MODERN SPECIES	133		ENSCLAG00000009724	ATPSCKMT (ENSCLAG00000007449)	CCT5 (ENSCLAG00000008074)	CMBL (ENSCLAG00000012029)	MARCHF6 (ENSCLAG00000013772)	ROPN1L (ENSCLAG00000007892)	ANKRD33B (ENSCLAG00000008394)	DAP (ENSCLAG00000008486)	CTNND2 (ENSCLAG00000010220)	DNAH5 (ENSCLAG00000013894)	TRIO (ENSCLAG00000009822) #16	OTULINL (ENSCLAG00000015072) #17	OTULIN (ENSCLAG00000012182) #18	ANKH (ENSCLAG00000011007) #19	FBXL7 (ENSCLAG00000014128) #22	MARCHF11 (ENSCLAG00000010027) #23	ZNF622 (ENSCLAG00000011494) #24	RETREG1 (ENSCLAG00000014211) #25	MYO10 (ENSCLAG00000014503) #27	BASP1 (ENSCLAG00000015086)	CDH18 (ENSCLAG00000011951)	CDH12 (ENSCLAG00000013527)	CDH10 (ENSCLAG00000011884)	CDH9 (ENSCLAG00000008482)	CDH6 (ENSCLAG00000007448)	DROSHA (ENSCLAG00000013048)	C5orf22 (ENSCLAG00000007169)	PDZD2 (ENSCLAG00000007256)	GOLPH3 (ENSCLAG00000008270)	MTMR12 (ENSCLAG00000008003)
Guinea pig	MODERN SPECIES	55	ENSCPOG00000005307	ENSCPOG00000038189	ENSCPOG00000039180	ATPSCKMT (ENSCPOG00000002022)	CCT5 (ENSCPOG00000002023)	CMBL (ENSCPOG00000002024)	MARCHF6 (ENSCPOG00000000213)	ROPN1L (ENSCPOG00000032598)	ENSCPOG00000040408	CTNND2 (ENSCPOG00000023221)	DNAH5 (ENSCPOG00000015078)	TRIO (ENSCPOG00000009097) #16	OTULINL (ENSCPOG00000008574) #17	OTULIN (ENSCPOG00000012126) #18	ANKH (ENSCPOG00000012339) #19	FBXL7 (ENSCPOG00000013129) #22	MARCHF11 (ENSCPOG00000026502) #23	ZNF622 (ENSCPOG00000002276) #24	RETREG1 (ENSCPOG00000002278) #25	MYO10 (ENSCPOG00000004645) #27	BASP1 (ENSCPOG00000040611)	CDH18 (ENSCPOG00000015587)
Naked mole-rat female	MODERN SPECIES	7	ENSHGLG00000004654	ANKRD33B (ENSHGLG00000036584)	ENSHGLG00000015867	ENSHGLG00000007547	ENSHGLG00000032946	ENSHGLG00000034637	ENSHGLG00000017230	ENSHGLG00000034661	ENSHGLG00000004104	ENSHGLG00000004346 #16	OTULINL (ENSHGLG00000007364) #17	ENSHGLG00000040674	OTULIN (ENSHGLG00000008326) #18	ANKH (ENSHGLG00000009005) #19	ENSHGLG00000049744	FBXL7 (ENSHGLG00000039624) #22	ENSHGLG00000005413	ENSHGLG00000047002 #23	ENSHGLG00000042572	ZNF622 (ENSHGLG00000040123) #24	RETREG1 (ENSHGLG00000033002) #25	MYO10 (ENSHGLG00000006481) #27	ENSHGLG00000041373	ENSHGLG00000040982	ENSHGLG00000000095	ENSHGLG00000011908	ENSHGLG00000003890	ENSHGLG00000003675	ENSHGLG00000036098	ENSHGLG00000040270	ENSHGLG00000019942
Sciuridae	ANCESTRAL SPECIES	32	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a	ENSGT00500000044852.a	ENSGT00940000154574.c	ENSGT00940000154952.a.b	ENSGT00940000155533.d	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #19	ENSGT00940000158009 #22	ENSGT00940000160025 #23	ENSGT00390000018047 #24	ENSGT00940000160746 #25	ENSGT00940000155469 #27	ENSGT00730000111450	ENSGT00940000157512	ENSGT00940000154187.a.b	ENSGT00940000154187.a.a	ENSGT00940000160496.b	ENSGT00940000154673.a	ENSGT00730000111052	ENSGT00390000001801	ENSGT00910000144505	ENSGT00940000157749	ENSGT00390000007153.a.a
Marmotini	ANCESTRAL SPECIES	75	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a	ENSGT00500000044852.a	ENSGT00940000154574.c	ENSGT00940000154952.a.b	ENSGT00940000155533.d	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #19	ENSGT00940000158009 #22	ENSGT00940000160025 #23
Alpin marmot	MODERN SPECIES	27	CCT5 (ENSMMMG00000016876)	CMBL (ENSMMMG00000016882)	MARCHF6 (ENSMMMG00000016892)	ROPN1L (ENSMMMG00000016907)	ANKRD33B (ENSMMMG00000016918)	DAP (ENSMMMG00000016933)	CTNND2 (ENSMMMG00000016961)	ENSMMMG00000017027	ENSMMMG00000017037	DNAH5 (ENSMMMG00000017061)	ENSMMMG00000017112 #16	ENSMMMG00000017138 #16	OTULINL (ENSMMMG00000017171) #17	OTULIN (ENSMMMG00000017186) #18	ANKH (ENSMMMG00000017192) #19	FBXL7 (ENSMMMG00000017213) #22	ENSMMMG00000017221	CCDC152 (ENSMMMG00000017224)	GHR (ENSMMMG00000017240)	FBXO4 (ENSMMMG00000017291)	RIMOC1 (ENSMMMG00000017296)	ENSMMMG00000017300	PLCXD3 (ENSMMMG00000017352)	C6 (ENSMMMG00000017358)	MROH2B (ENSMMMG00000017369)	ENSMMMG00000017396 #15	C7 (ENSMMMG00000017398)	CARD6 (ENSMMMG00000017776)	RPL37 (ENSMMMG00000017779)	PRKAA1 (ENSMMMG00000017787)	TTC33 (ENSMMMG00000017819)
Marmotini_b	ANCESTRAL SPECIES	157	ENSGT00940000158036	ENSGT01100000263477.E	ENSGT00390000014771.a	ENSGT00550000074988	ENSGT00390000000183	ENSGT00940000155171.a.b	ENSGT00390000012731.a.a	ENSGT00500000044852.a	ENSGT00940000154574.c	ENSGT00940000154952.a.b	ENSGT00940000155533.d	ENSGT00940000154766.a.a #16	ENSGT00390000009802.a #17	ENSGT00390000009802.b #18	ENSGT00390000012189 #19	ENSGT00940000158009 #22	ENSGT00940000160025 #23
Squirrel	MODERN SPECIES	265											DNAH5 (ENSSTOG00000012887)	TRIO (ENSSTOG00000012982) #16	OTULINL (ENSSTOG00000012967) #17	OTULIN (ENSSTOG00000014627) #18	ANKH (ENSSTOG00000014630) #19	FBXL7 (ENSSTOG00000026709) #22	MARCHF11 (ENSSTOG00000015947) #23
Arctic ground squirrel	MODERN SPECIES	101									CTNND2 (ENSUPAG00010018407)	DNAH5 (ENSUPAG00010018491)	TRIO (ENSUPAG00010018613) #16	OTULINL (ENSUPAG00010018805) #17	OTULIN (ENSUPAG00010018826) #18	ANKH (ENSUPAG00010018838) #19	ENSUPAG00010018857	FBXL7 (ENSUPAG00010018865) #22	MARCHF11 (ENSUPAG00010018880) #23
Eurasian red squirrel	MODERN SPECIES	15	ATPSCKMT (ENSSVLG00005005707)	ENSSVLG00005005577	CMBL (ENSSVLG00005005537)	ENSSVLG00005005507	ENSSVLG00005005490	ROPN1L (ENSSVLG00005005364)	ANKRD33B (ENSSVLG00005005329)	DAP (ENSSVLG00005005317)	CTNND2 (ENSSVLG00005005089)	DNAH5 (ENSSVLG00005004822)	ENSSVLG00005004695 #16	ENSSVLG00005004640 #16	OTULINL (ENSSVLG00005004612) #17	OTULIN (ENSSVLG00005004587) #18	ANKH (ENSSVLG00005004559) #19	FBXL7 (ENSSVLG00005004530) #22	MARCHF11 (ENSSVLG00005004512) #23	ZNF622 (ENSSVLG00005004487) #24	RETREG1 (ENSSVLG00005004440) #25	MYO10 (ENSSVLG00005004378) #27	ENSSVLG00005004321	ENSSVLG00005004307	CDH18 (ENSSVLG00005004254)	ENSSVLG00005004221	ENSSVLG00005004196	CDH12 (ENSSVLG00005010824)	ENSSVLG00005010760	ENSSVLG00005010723	ENSSVLG00005010682	CDH10 (ENSSVLG00005010571)	ENSSVLG00005010536