Gnathostomata	ANCESTRAL SPECIES	172											ENSGT00940000159293 #30	ENSGT00940000157972 #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182960.a.a #24	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300
Tetrapoda	ANCESTRAL SPECIES	75								ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Amniota	ANCESTRAL SPECIES	11	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00940000156819.a.b	ENSGT00940000157017.a.b.a	ENSGT01090000260051.b.a.b	ENSGT00390000013965	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35
Mammalia	ANCESTRAL SPECIES	11	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00940000156819.a.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Theria	ANCESTRAL SPECIES	10	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00940000156819.a.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Eutheria	ANCESTRAL SPECIES	22	ENSGT00950000184989	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.A #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34
Boreoeutheria	ANCESTRAL SPECIES	12	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Laurasiatheria	ANCESTRAL SPECIES	10	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Laurasiatheria_a	ANCESTRAL SPECIES	12	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Laurasiatheria_b	ANCESTRAL SPECIES	12	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Laurasiatheria_c	ANCESTRAL SPECIES	12	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Chiroptera	ANCESTRAL SPECIES	51	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Microchiroptera	ANCESTRAL SPECIES	48	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Greater horseshoe bat	MODERN SPECIES	16	USP42 (ENSRFEG00010009774)	CYTH3 (ENSRFEG00010009801)	FAM220A (ENSRFEG00010009862)	ENSRFEG00010009875	ENSRFEG00010009899	RAC1 (ENSRFEG00010009950) #7	DAGLB (ENSRFEG00010009989) #8	GRID2IP (ENSRFEG00010010184) #10	ENSRFEG00010011143	ZDHHC4 (ENSRFEG00010011173) #11	INTS15 (ENSRFEG00010011207) #13	ZNF853 (ENSRFEG00010011438) #14	ZNF316 (ENSRFEG00010011513) #15	RBAK (ENSRFEG00010011587) #19	ENSRFEG00010011657 #17	RNF216 (ENSRFEG00010011679) #22	FSCN1 (ENSRFEG00010011743) #23	ACTB (ENSRFEG00010011816) #24	FBXL18 (ENSRFEG00010011882) #25	TNRC18 (ENSRFEG00010012024) #26	SLC29A4 (ENSRFEG00010012223) #27	WIPI2 (ENSRFEG00010012504) #28	MMD2 (ENSRFEG00010012618) #29	RADIL (ENSRFEG00010012660) #30	ENSRFEG00010012716 #31	AP5Z1 (ENSRFEG00010012785) #32	FOXK1 (ENSRFEG00010012837) #33	SDK1 (ENSRFEG00010012938) #34	CARD11 (ENSRFEG00010014966) #35	GNA12 (ENSRFEG00010015037) #36	AMZ1 (ENSRFEG00010015108) #37
Microbat	MODERN SPECIES	1145	ENSMLUG00000025192	ENSMLUG00000009111	PMS2 (ENSMLUG00000003795)	AIMP2 (ENSMLUG00000003807)	EIF2AK1 (ENSMLUG00000003813)	ANKRD61 (ENSMLUG00000003826)	USP42 (ENSMLUG00000003835)	CYTH3 (ENSMLUG00000003845)	RAC1 (ENSMLUG00000009701) #7	DAGLB (ENSMLUG00000009722) #8	KDELR2 (ENSMLUG00000009766) #9	ENSMLUG00000017011 #11	INTS15 (ENSMLUG00000012486) #13	ENSMLUG00000005596 #17	RBAK (ENSMLUG00000004409) #19	RNF216 (ENSMLUG00000015738) #22
Megabat	MODERN SPECIES	7103																RNF216 (ENSPVAG00000014420) #22
Equus	ANCESTRAL SPECIES	22	ENSGT00390000014547.c	ENSGT00940000163089.b	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00940000162441.d	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Donkey	MODERN SPECIES	5	ENSEASG00005000651	RAC1 (ENSEASG00005035702) #7	DAGLB (ENSEASG00005000637) #8	KDELR2 (ENSEASG00005000632) #9	GRID2IP (ENSEASG00005000529) #10	ZDHHC4 (ENSEASG00005000494) #11	INTS15 (ENSEASG00005000468) #13	ZNF853 (ENSEASG00005036604) #14	ZNF316 (ENSEASG00005032381) #15	ENSEASG00005032120 #16	ENSEASG00005000421 #17	ENSEASG00005037577 #18	ENSEASG00005028623 #19	ENSEASG00005000386 #18	ENSEASG00005000366	ENSEASG00005000044 #22	FSCN1 (ENSEASG00005000015) #23	ENSEASG00005032101 #24	FBXL18 (ENSEASG00005021567) #25	ENSEASG00005029233	SLC29A4 (ENSEASG00005034570) #27	WIPI2 (ENSEASG00005021536) #28	MMD2 (ENSEASG00005021534) #29	RADIL (ENSEASG00005021515) #30	AP5Z1 (ENSEASG00005021502) #32	FOXK1 (ENSEASG00005021498) #33	SDK1 (ENSEASG00005021355) #34	CARD11 (ENSEASG00005021231) #35	GNA12 (ENSEASG00005024839) #36	ENSEASG00005021210 #37	ENSEASG00005021202
Horse	MODERN SPECIES	4	RAC1 (ENSECAG00000009727)	DAGLB (ENSECAG00000013070) #8	KDELR2 (ENSECAG00000052302) #9	GRID2IP (ENSECAG00000010225) #10	ZDHHC4 (ENSECAG00000000176) #11	INTS15 (ENSECAG00000011713) #13	ZNF853 (ENSECAG00000035205) #14	ZNF316 (ENSECAG00000039546) #15	ENSECAG00000057783 #16	ENSECAG00000002260 #18	ENSECAG00000007603 #18	RBAK (ENSECAG00000009724) #19	ZNF12 (ENSECAG00000016420) #17	OR10AH1B (ENSECAG00000042711) #20	ENSECAG00000050823	RNF216 (ENSECAG00000013171) #22	FSCN1 (ENSECAG00000008056) #23	ACTB (ENSECAG00000015935) #24	FBXL18 (ENSECAG00000018678) #25	TNRC18 (ENSECAG00000021171) #26	SLC29A4 (ENSECAG00000021634) #27	WIPI2 (ENSECAG00000022114) #28	MMD2 (ENSECAG00000015536) #29	PAPOLB (ENSECAG00000053418) #31	RADIL (ENSECAG00000019718) #30	AP5Z1 (ENSECAG00000058137) #32	FOXK1 (ENSECAG00000015133) #33	ENSECAG00000003681	SDK1 (ENSECAG00000016545) #34	ENSECAG00000058327	CARD11 (ENSECAG00000005704) #35
Carnivora	ANCESTRAL SPECIES	12	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Caniformia	ANCESTRAL SPECIES	8	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Caniformia_b	ANCESTRAL SPECIES	7	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Ursidae	ANCESTRAL SPECIES	3	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Ursus	ANCESTRAL SPECIES	32	ENSGT00840000130004	ENSGT00390000014156	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.b ##24	ENSGT00940000160116	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551	ENSGT00940000156018.B
American black bear	MODERN SPECIES	42	RAC1 (ENSUAMG00000023530) #7	DAGLB (ENSUAMG00000023532) #8	KDELR2 (ENSUAMG00000023534) #9	GRID2IP (ENSUAMG00000023537) #10	ZDHHC4 (ENSUAMG00000023548) #11	ENSUAMG00000023551 #12	INTS15 (ENSUAMG00000023552) #13	ENSUAMG00000023557 #15	ENSUAMG00000023558 #15	ENSUAMG00000023559	ENSUAMG00000023581 #16	ZNF12 (ENSUAMG00000023608) #17	ENSUAMG00000023609 #18	RBAK (ENSUAMG00000023610) #19	ENSUAMG00000023611	RNF216 (ENSUAMG00000023613) #22	FSCN1 (ENSUAMG00000023614) #23	ENSUAMG00000023615 #24
Polar bear	MODERN SPECIES	212	ANKRD61 (ENSUMAG00000008978)	EIF2AK1 (ENSUMAG00000008793)	ENSUMAG00000008783	ENSUMAG00000008780	ENSUMAG00000008775	RAC1 (ENSUMAG00000008742) #7	DAGLB (ENSUMAG00000008562) #8	KDELR2 (ENSUMAG00000008508) #9	ZDHHC4 (ENSUMAG00000008503) #11	INTS15 (ENSUMAG00000008492) #13	ZNF12 (ENSUMAG00000008484) #17	ENSUMAG00000008479 #18	ENSUMAG00000008474	RBAK (ENSUMAG00000008468) #19	ENSUMAG00000008446	RNF216 (ENSUMAG00000008432) #22	ENSUMAG00000008422 #23	ENSUMAG00000007902 ##24	WIPI2 (ENSUMAG00000007655) #28	MMD2 (ENSUMAG00000007636) #29	PAPOLB (ENSUMAG00000007631) #31	ENSUMAG00000007627 #30	ENSUMAG00000007613 #32	FOXK1 (ENSUMAG00000007608) #33	SDK1 (ENSUMAG00000007587) #34	CARD11 (ENSUMAG00000007449) #35	GNA12 (ENSUMAG00000007425) #36	BRAT1 (ENSUMAG00000007379)	IQCE (ENSUMAG00000007369)	ENSUMAG00000007362	CHST12 (ENSUMAG00000007360)
Giant Panda	MODERN SPECIES	1	ENSAMEG00000025057	ENSAMEG00000023754	RAC1 (ENSAMEG00000006764) #7	DAGLB (ENSAMEG00000006734) #8	KDELR2 (ENSAMEG00000006722) #9	GRID2IP (ENSAMEG00000006715) #10	ZDHHC4 (ENSAMEG00000006702) #11	INTS15 (ENSAMEG00000006695) #13	ENSAMEG00000031401 #15	ENSAMEG00000024417 #16	ENSAMEG00000006671 #18	ENSAMEG00000006680 #17	ENSAMEG00000006666 #19	ENSAMEG00000019172 #20	ENSAMEG00000007368 #21	ENSAMEG00000006634 #22	FSCN1 (ENSAMEG00000006620) #23	FBXL18 (ENSAMEG00000006596) #25	TNRC18 (ENSAMEG00000006566) #26	SLC29A4 (ENSAMEG00000006554) #27	WIPI2 (ENSAMEG00000006521) #28	MMD2 (ENSAMEG00000006506) #29	ENSAMEG00000027802 #31	RADIL (ENSAMEG00000006479) #30	AP5Z1 (ENSAMEG00000006450) #32	FOXK1 (ENSAMEG00000006428) #33	SDK1 (ENSAMEG00000006400) #34	CARD11 (ENSAMEG00000009614) #35	ENSAMEG00000027936 #36	ENSAMEG00000003182 #37	ENSAMEG00000003206
Mustelinae	ANCESTRAL SPECIES	64	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
American mink	MODERN SPECIES	113	USP42 (ENSNVIG00000006223)	CYTH3 (ENSNVIG00000006203)	ENSNVIG00000006191	ENSNVIG00000006188	RAC1 (ENSNVIG00000006036) #7	DAGLB (ENSNVIG00000005999) #8	KDELR2 (ENSNVIG00000005984) #9	GRID2IP (ENSNVIG00000005909) #10	ZDHC4 (ENSNVIG00000005822) #11	INTS15 (ENSNVIG00000005787) #13	ZNF316 (ENSNVIG00000005744) #15	ENSNVIG00000005736 #16	ZNF12 (ENSNVIG00000005705) #17	RBAK (ENSNVIG00000005690) #19	ENSNVIG00000005682	RNF216 (ENSNVIG00000005665) #22	FSCN1 (ENSNVIG00000005656) #23	ACTB (ENSNVIG00000005620) #24	FBXL18 (ENSNVIG00000005606) #25	TNRC18 (ENSNVIG00000005507) #26	SLC29A4 (ENSNVIG00000005478) #27	WIPI2 (ENSNVIG00000005410) #28	MMD2 (ENSNVIG00000005381) #29	ENSNVIG00000005365 #31	RADIL (ENSNVIG00000005352) #30	AP5Z1 (ENSNVIG00000005295) #32	FOXK1 (ENSNVIG00000005282) #33	SDK1 (ENSNVIG00000005012) #34	CARD11 (ENSNVIG00000004967) #35	GNA12 (ENSNVIG00000004952) #36	AMZ1 (ENSNVIG00000004916) #37
Ferret	MODERN SPECIES	366	CYTH3 (ENSMPUG00000016578)	RAC1 (ENSMPUG00000016579) #7	DAGLB (ENSMPUG00000016581) #8	KDELR2 (ENSMPUG00000016583) #9	GRID2IP (ENSMPUG00000016585) #10	ZDHHC4 (ENSMPUG00000016586) #11	INTS15 (ENSMPUG00000016589) #13	ENSMPUG00000016591	ZNF316 (ENSMPUG00000016592) #15	ENSMPUG00000016594 #16	ZNF12 (ENSMPUG00000016596) #17	ENSMPUG00000016601 #18	RBAK (ENSMPUG00000016607) #19	ENSMPUG00000020103 #20	ENSMPUG00000016608	RNF216 (ENSMPUG00000016610) #22	FSCN1 (ENSMPUG00000016611) #23	ACTB (ENSMPUG00000016612) #24	FBXL18 (ENSMPUG00000016613) #25	TNRC18 (ENSMPUG00000016618) #26	SLC29A4 (ENSMPUG00000016628) #27	ENSMPUG00000020104	WIPI2 (ENSMPUG00000016629) #28	MMD2 (ENSMPUG00000016644) #29	RADIL (ENSMPUG00000016653) #30	AP5Z1 (ENSMPUG00000016654) #32	FOXK1 (ENSMPUG00000016655) #33	ENSMPUG00000016656	ENSMPUG00000016657	SDK1 (ENSMPUG00000016658) #34
Canidae	ANCESTRAL SPECIES	3	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A.z #18	ENSGT00940000154173.A.y #18	ENSGT00940000154303.A.b #19	ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Canis_lupus	ANCESTRAL SPECIES	2	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A.y.a #18	ENSGT00940000154173.A.y.b #18	ENSGT00940000154303.A.b #19	ENSGT00990000207633	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Dingo	MODERN SPECIES	351	ENSCAFG00020017101	DAGLB (ENSCAFG00020017102) #8	KDELR2 (ENSCAFG00020017103) #9	GRID2IP (ENSCAFG00020017108) #10	ZDHHC4 (ENSCAFG00020017122) #11	INTS15 (ENSCAFG00020017128) #13	ZNF853 (ENSCAFG00020017130) #14	ZNF316 (ENSCAFG00020017131) #15	ENSCAFG00020017134 #16	ENSCAFG00020017136 #16	ZNF12 (ENSCAFG00020017137) #17	ENSCAFG00020017140 #18	ENSCAFG00020017146 #18	RBAK (ENSCAFG00020017150) #19	ENSCAFG00020017164	RNF216 (ENSCAFG00020017169) #22	FSCN1 (ENSCAFG00020017175) #23	ENSCAFG00020017179 #24	ACTB (ENSCAFG00020017181) #24	FBXL18 (ENSCAFG00020017182) #25	TNRC18 (ENSCAFG00020017198) #26	SLC29A4 (ENSCAFG00020017294) #27	WIPI2 (ENSCAFG00020017298) #28	MMD2 (ENSCAFG00020017313) #29	RADIL (ENSCAFG00020017323) #30	ENSCAFG00020017324 #31	AP5Z1 (ENSCAFG00020017328) #32	FOXK1 (ENSCAFG00020017334) #33
Dog	MODERN SPECIES	34	KDELR2 (ENSCAFG00845011781) #9	GRID2IP (ENSCAFG00845012466) #10	ZDHHC4 (ENSCAFG00845012594) #11	C6H7orf26 (ENSCAFG00845012647) #13	ZNF853 (ENSCAFG00845012765) #14	ZNF316 (ENSCAFG00845012808) #15	ENSCAFG00845012837 #16	ENSCAFG00845012858 #19	ZNF12 (ENSCAFG00845012896) #17	ENSCAFG00845012927 #18	ENSCAFG00845012969 #18	ENSCAFG00845013016 #18	ENSCAFG00845013049 #18	ENSCAFG00845013157	ENSCAFG00845013182	ENSCAFG00845013229 #22	FSCN1 (ENSCAFG00845013389) #23	ACTB (ENSCAFG00845013473) #24	FBXL18 (ENSCAFG00845013529) #25	TNRC18 (ENSCAFG00845013689) #26	SLC29A4 (ENSCAFG00845013927) #27	WIPI2 (ENSCAFG00845013987) #28	RADIL (ENSCAFG00845014147) #30	PAPOLB (ENSCAFG00845014285) #31	AP5Z1 (ENSCAFG00845014308) #32	FOXK1 (ENSCAFG00845014339) #33	SDK1 (ENSCAFG00845014480) #34	CARD11 (ENSCAFG00845015176) #35	GNA12 (ENSCAFG00845015668) #36	ENSCAFG00845015695	AMZ1 (ENSCAFG00845015724) #37
Red fox	MODERN SPECIES	85														RBAK (ENSVVUG00000006406) #19	ENSVVUG00000006401	RNF216 (ENSVVUG00000006387) #22	FSCN1 (ENSVVUG00000006354) #23	ENSVVUG00000006351 #24	ENSVVUG00000006348 ##24	FBXL18 (ENSVVUG00000006340) #25	TNRC18 (ENSVVUG00000006202) #26	SLC29A4 (ENSVVUG00000006184) #27	WIPI2 (ENSVVUG00000006176) #28	ENSVVUG00000006170 #31	RADIL (ENSVVUG00000006124) #30	AP5Z1 (ENSVVUG00000006080) #32	FOXK1 (ENSVVUG00000006072) #33	SDK1 (ENSVVUG00000005985) #34	CARD11 (ENSVVUG00000005644) #35	GNA12 (ENSVVUG00000005611) #36	AMZ1 (ENSVVUG00000005606) #37
Felidae	ANCESTRAL SPECIES	19	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00390000005052.s.b.a	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Panthera	ANCESTRAL SPECIES	27	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00390000005052.s.b.a	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Tiger	MODERN SPECIES	155	PMS2 (ENSPTIG00000015503)	AIMP2 (ENSPTIG00000018361)	EIF2AK1 (ENSPTIG00000019095)	ANKRD61 (ENSPTIG00000021190)	ENSPTIG00000021548	FAM220A (ENSPTIG00000007251)	RAC1 (ENSPTIG00000002902) #7	DAGLB (ENSPTIG00000007110) #8	KDELR2 (ENSPTIG00000009649) #9	GRID2IP (ENSPTIG00000010978) #10	ZDHHC4 (ENSPTIG00000017464) #11	INTS15 (ENSPTIG00000017840) #13	ZNF12 (ENSPTIG00000019096) #17	ENSPTIG00000020644 #18	RBAK (ENSPTIG00000020755) #19	RNF216 (ENSPTIG00000021179) #22	ENSPTIG00000021755 #23	ENSPTIG00000021797 ##24	ENSPTIG00000021870 #25	ENSPTIG00000021940	WIPI2 (ENSPTIG00000021994) #28	ENSPTIG00000000233	MMD2 (ENSPTIG00000008440) #29	RADIL (ENSPTIG00000011810) #30	ENSPTIG00000013045 #32	SDK1 (ENSPTIG00000016082) #34	CARD11 (ENSPTIG00000011071) #35
Panthera_a	ANCESTRAL SPECIES	27	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00390000005052.s.b.a	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
leopard	MODERN SPECIES	91	ENSPPRG00000009316	CYTH3 (ENSPPRG00000010324)	FAM220A (ENSPPRG00000010389)	ENSPPRG00000010644	RAC1 (ENSPPRG00000011136) #7	DAGLB (ENSPPRG00000013174) #8	KDELR2 (ENSPPRG00000013747) #9	GRID2IP (ENSPPRG00000023803) #10	ZDHHC4 (ENSPPRG00000022766) #11	INTS15 (ENSPPRG00000000233) #13	ZNF853 (ENSPPRG00000000332) #14	ZNF316 (ENSPPRG00000000894) #15	ZNF12 (ENSPPRG00000001734) #17	ENSPPRG00000001934 #18	RBAK (ENSPPRG00000002149) #19	RNF216 (ENSPPRG00000003482) #22	FSCN1 (ENSPPRG00000003969) #23	ACTB (ENSPPRG00000004533) #24	FBXL18 (ENSPPRG00000004952) #25	TNRC18 (ENSPPRG00000009594) #26	SLC29A4 (ENSPPRG00000011198) #27	WIPI2 (ENSPPRG00000013624) #28	ENSPPRG00000015768	MMD2 (ENSPPRG00000014336) #29	RADIL (ENSPPRG00000015310) #30	AP5Z1 (ENSPPRG00000017985) #32	SDK1 (ENSPPRG00000005273) #34	ENSPPRG00000005793 #34	CARD11 (ENSPPRG00000006200) #35	GNA12 (ENSPPRG00000006633) #36	AMZ1 (ENSPPRG00000007695) #37
lion	MODERN SPECIES	16	FAM220A (ENSPLOG00000013819)	ENSPLOG00000013840	ENSPLOG00000013878	RAC1 (ENSPLOG00000013940) #7	DAGLB (ENSPLOG00000014032) #8	KDELR2 (ENSPLOG00000014105) #9	GRID2IP (ENSPLOG00000014225) #10	ZDHHC4 (ENSPLOG00000014884) #11	INTS15 (ENSPLOG00000014931) #13	ZNF853 (ENSPLOG00000015012) #14	ZNF316 (ENSPLOG00000015027) #15	ENSPLOG00000015076 #16	ZNF12 (ENSPLOG00000015122) #17	ENSPLOG00000015268 #18	RBAK (ENSPLOG00000015338) #19	RNF216 (ENSPLOG00000015392) #22	FSCN1 (ENSPLOG00000015460) #23	ACTB (ENSPLOG00000015512) #24	FBXL18 (ENSPLOG00000015550) #25	TNRC18 (ENSPLOG00000015617) #26	SLC29A4 (ENSPLOG00000015768) #27	WIPI2 (ENSPLOG00000015941) #28	ENSPLOG00000016250	MMD2 (ENSPLOG00000016274) #29	RADIL (ENSPLOG00000016400) #30	AP5Z1 (ENSPLOG00000016568) #32	FOXK1 (ENSPLOG00000016612) #33	SDK1 (ENSPLOG00000017002) #34	ENSPLOG00000018861 #35	GNA12 (ENSPLOG00000018946) #36	AMZ1 (ENSPLOG00000018986) #37
Cat	MODERN SPECIES	247	FAM220A (ENSFCAG00000053347)	ENSFCAG00000042468	RAC1 (ENSFCAG00000011361) #7	DAGLB (ENSFCAG00000011362) #8	KDELR2 (ENSFCAG00000031430) #9	GRID2IP (ENSFCAG00000007510) #10	ZDHHC4 (ENSFCAG00000023338) #11	INTS15 (ENSFCAG00000008338) #13	ZNF853 (ENSFCAG00000040667) #14	ZNF316 (ENSFCAG00000043529) #15	ENSFCAG00000051237 #16	ZNF12 (ENSFCAG00000008342) #17	ENSFCAG00000001821 #18	RBAK (ENSFCAG00000037840) #19	ENSFCAG00000048020 #21	RNF216 (ENSFCAG00000013381) #22	FSCN1 (ENSFCAG00000009023) #23	ACTB (ENSFCAG00000006788) #24	FBXL18 (ENSFCAG00000007266) #25	TNRC18 (ENSFCAG00000001949) #26	SLC29A4 (ENSFCAG00000001946) #27	WIPI2 (ENSFCAG00000009990) #28	ENSFCAG00000042383	PAPOLB (ENSFCAG00000041877) #31	AP5Z1 (ENSFCAG00000009983) #32	RADIL (ENSFCAG00000009986) #30	SDK1 (ENSFCAG00000012315) #34	CARD11 (ENSFCAG00000008561) #35	GNA12 (ENSFCAG00000043446) #36	AMZ1 (ENSFCAG00000008559) #37	BRAT1 (ENSFCAG00000031391)
Artiodactyla	ANCESTRAL SPECIES	10	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Artiodactyla_a	ANCESTRAL SPECIES	10	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Artiodactyla_b	ANCESTRAL SPECIES	9	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Cetacea	ANCESTRAL SPECIES	3	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.u #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Odontoceti	ANCESTRAL SPECIES	3	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.u #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Odontoceti_a	ANCESTRAL SPECIES	3	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.u #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Odontoceti_b	ANCESTRAL SPECIES	3	ENSGT00940000154509	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00940000154303.C #21	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.u #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Monodontidae	ANCESTRAL SPECIES	1	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.u #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Narwhal	MODERN SPECIES	299	CYTH3 (ENSMMNG00015004066)	ENSMMNG00015004084	FAM220A (ENSMMNG00015004094)	ENSMMNG00015004103	RAC1 (ENSMMNG00015004118) #7	DAGLB (ENSMMNG00015004155) #8	KDELR2 (ENSMMNG00015004183) #9	GRID2IP (ENSMMNG00015004237) #10	ZDHHC4 (ENSMMNG00015004329) #11	INTS15 (ENSMMNG00015004351) #13	ZNF853 (ENSMMNG00015004374) #14	ZNF316 (ENSMMNG00015004386) #15	ENSMMNG00015004399	ZNF12 (ENSMMNG00015004410) #17	RBAK (ENSMMNG00015004421) #19	RNF216 (ENSMMNG00015004436) #22	FSCN1 (ENSMMNG00015004457) #23	ACTB (ENSMMNG00015004465) #24	FBXL18 (ENSMMNG00015004476) #25	TNRC18 (ENSMMNG00015000119) #26	SLC29A4 (ENSMMNG00015000434) #27	WIPI2 (ENSMMNG00015000506) #28	MMD2 (ENSMMNG00015000620) #29	ENSMMNG00015000661 #30	ENSMMNG00015000682 #31	ENSMMNG00015000725	CARD11 (ENSMMNG00015000750) #35	GNA12 (ENSMMNG00015000806) #36	AMZ1 (ENSMMNG00015000837) #37	BRAT1 (ENSMMNG00015000870)	IQCE (ENSMMNG00015000989)
Beluga whale	MODERN SPECIES	48	FAM220A (ENSDLEG00000020719)	ENSDLEG00000020721	RAC1 (ENSDLEG00000020724) #7	DAGLB (ENSDLEG00000020750) #8	KDELR2 (ENSDLEG00000020768) #9	GRID2IP (ENSDLEG00000020777) #10	ZDHHC4 (ENSDLEG00000020816) #11	CUNH7orf26 (ENSDLEG00000020822) #13	ZNF316 (ENSDLEG00000020834) #15	ENSDLEG00000020842	ZNF12 (ENSDLEG00000020849) #17	ENSDLEG00000020858 #18	RBAK (ENSDLEG00000020874) #19	ENSDLEG00000020890	ENSDLEG00000020897 #21	RNF216 (ENSDLEG00000020911) #22	FSCN1 (ENSDLEG00000020922) #23	ACTB (ENSDLEG00000020930) #24	FBXL18 (ENSDLEG00000020936) #25	TNRC18 (ENSDLEG00000020944) #26	SLC29A4 (ENSDLEG00000020956) #27	WIPI2 (ENSDLEG00000020964) #28	MMD2 (ENSDLEG00000020967) #30	AP5Z1 (ENSDLEG00000020980) #32	FOXK1 (ENSDLEG00000020989) #33	SDK1 (ENSDLEG00000021011) #34
Blue whale	MODERN SPECIES	6	ENSBMSG00010016778	ENSBMSG00010016792	RAC1 (ENSBMSG00010016821) #7	DAGLB (ENSBMSG00010016888) #8	KDELR2 (ENSBMSG00010016947) #9	GRID2IP (ENSBMSG00010017008) #10	ZDHHC4 (ENSBMSG00010017231) #11	INTS15 (ENSBMSG00010017272) #13	ZNF853 (ENSBMSG00010017356) #14	ZNF316 (ENSBMSG00010017370) #15	ENSBMSG00010017391	ENSBMSG00010017413 #17	ENSBMSG00010017442 #18	RBAK (ENSBMSG00010017485) #19	ENSBMSG00010017515 #21	RNF216 (ENSBMSG00010017535) #22	ENSBMSG00010017603 #23	ENSBMSG00010017637 #24	FBXL18 (ENSBMSG00010017696) #25	TNRC18 (ENSBMSG00010017759) #26	SLC29A4 (ENSBMSG00010017873) #27	WIPI2 (ENSBMSG00010017926) #28	MMD2 (ENSBMSG00010018042) #29	RADIL (ENSBMSG00010018116) #30	ENSBMSG00010018143 #31	AP5Z1 (ENSBMSG00010018185) #32	FOXK1 (ENSBMSG00010018237) #33	ENSBMSG00010018280 #18	ENSBMSG00010018316 #18	ENSBMSG00010018352 #18	SDK1 (ENSBMSG00010018467) #34
Pecora	ANCESTRAL SPECIES	10	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Percora_a	ANCESTRAL SPECIES	9	ENSGT00390000014156	ENSGT00960000187139	ENSGT00390000014547.c.k	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Bovidae	ANCESTRAL SPECIES	11	ENSGT00960000187139	ENSGT00390000014547.c.k	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Caprinae	ANCESTRAL SPECIES	7	ENSGT00390000014156	ENSGT00390000014547.c.k.b	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Bos	ANCESTRAL SPECIES	9	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00740000116898	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35
Wild yak	MODERN SPECIES	73															ENSBMUG00000021270	RNF216 (ENSBMUG00000021250) #22	FSCN1 (ENSBMUG00000021206) #23	ENSBMUG00000021189	ACTB (ENSBMUG00000021165) #24	ENSBMUG00000021154 #25	ENSBMUG00000021147	TNRC18 (ENSBMUG00000021120) #26	SLC29A4 (ENSBMUG00000020907) #27	WIPI2 (ENSBMUG00000020803) #28	MMD2 (ENSBMUG00000020771) #29	ENSBMUG00000020753 #31	ENSBMUG00000020742 #30	AP5Z1 (ENSBMUG00000020698) #32	FOXK1 (ENSBMUG00000020629) #33	SDK1 (ENSBMUG00000020412) #34	CARD11 (ENSBMUG00000019839) #35
Domestic yak	MODERN SPECIES	18	ENSBGRG00000025810	ENSBGRG00000025813	ENSBGRG00000025818	RAC1 (ENSBGRG00000025825) #7	DAGLB (ENSBGRG00000025849) #8	KDELR2 (ENSBGRG00000025874) #9	GRID2IP (ENSBGRG00000025896) #10	INTS15 (ENSBGRG00000025912) #13	ENSBGRG00000016685 #15	ZNF316 (ENSBGRG00000016721) #15	ZNF12 (ENSBGRG00000016763) #17	ENSBGRG00000016800 #18	RBAK (ENSBGRG00000016858) #19	ENSBGRG00000017510	ENSBGRG00000017557	RNF216 (ENSBGRG00000017667) #22	FSCN1 (ENSBGRG00000017874) #23	ENSBGRG00000017951	ACTB (ENSBGRG00000017982) #24	ENSBGRG00000018069 #25	ENSBGRG00000018131	TNRC18 (ENSBGRG00000018231) #26	SLC29A4 (ENSBGRG00000019655) #27	WIPI2 (ENSBGRG00000019714) #28	MMD2 (ENSBGRG00000020317) #29	RADIL (ENSBGRG00000020566) #30	ENSBGRG00000020674 #31	AP5Z1 (ENSBGRG00000020737) #32	FOXK1 (ENSBGRG00000021371) #33	SDK1 (ENSBGRG00000021551) #34	CARD11 (ENSBGRG00000022867) #35
Bos_b	ANCESTRAL SPECIES	6	ENSGT00390000014547.c.l	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00940000162678.c.b	ENSGT00960000191467	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00740000116898	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00970000198294	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35
Hybrid Bos Indicus	MODERN SPECIES	17	ENSBIXG00005007461	ENSBIXG00005016165	RAC1 (ENSBIXG00005016208) #7	DAGLB (ENSBIXG00005016269) #8	KDELR2 (ENSBIXG00005016301) #9	GRID2IP (ENSBIXG00005016633) #10	ZDHHC4 (ENSBIXG00005016695) #11	INTS15 (ENSBIXG00005016776) #13	ZNF853 (ENSBIXG00005016791) #14	ZNF316 (ENSBIXG00005005424) #15	ZNF12 (ENSBIXG00005016846) #17	ENSBIXG00005002730 #18	RBAK (ENSBIXG00005016874) #19	ENSBIXG00005016887	ENSBIXG00005016906	RNF216 (ENSBIXG00005016940) #22	FSCN1 (ENSBIXG00005016968) #23	ACTB (ENSBIXG00005017151) #24	ENSBIXG00005017173	FBXL18 (ENSBIXG00005017190) #25	SLC29A4 (ENSBIXG00005017203) #27	WIPI2 (ENSBIXG00005002852) #28	ENSBIXG00005002865	TNRC18 (ENSBIXG00005017820) #26	RADIL (ENSBIXG00005017981) #30	AP5Z1 (ENSBIXG00005018053) #32	FOXK1 (ENSBIXG00005018085) #33	SDK1 (ENSBIXG00005007808) #34	CARD11 (ENSBIXG00005007809) #35	GNA12 (ENSBIXG00005018233) #36	AMZ1 (ENSBIXG00005018259) #37
Cow	MODERN SPECIES	17	ENSBTAG00000051511	ENSBTAG00000053719	RAC1 (ENSBTAG00000053390) #7	DAGLB (ENSBTAG00000009236) #8	KDELR2 (ENSBTAG00000009237) #9	GRID2IP (ENSBTAG00000003308) #10	ZDHHC4 (ENSBTAG00000009547) #11	INTS15 (ENSBTAG00000021248) #13	ZNF853 (ENSBTAG00000053996) #14	ZNF316 (ENSBTAG00000003953) #15	ZNF12 (ENSBTAG00000039782) #17	ENSBTAG00000040014 #18	RBAK (ENSBTAG00000010291) #19	OR10AH1 (ENSBTAG00000005600) #20	ENSBTAG00000048231	RNF216 (ENSBTAG00000017175) #22	FSCN1 (ENSBTAG00000003191) #23	ENSBTAG00000047781	ACTB (ENSBTAG00000026199) #24	FBXL18 (ENSBTAG00000010264) #25	TNRC18 (ENSBTAG00000037400) #26	SLC29A4 (ENSBTAG00000007772) #27	WIPI2 (ENSBTAG00000012049) #28	MMD2 (ENSBTAG00000021913) #29	ENSBTAG00000051446	RADIL (ENSBTAG00000030690) #30	PAPOLB (ENSBTAG00000052734) #31	AP5Z1 (ENSBTAG00000012197) #32	FOXK1 (ENSBTAG00000019310) #33	SDK1 (ENSBTAG00000004035) #34	CARD11 (ENSBTAG00000014698) #35
American bison	MODERN SPECIES	3140	ANKRD61 (ENSBBBG00000010019)	ENSBBBG00000010015	CYTH3 (ENSBBBG00000010008)	ENSBBBG00000009985	RAC1 (ENSBBBG00000008427) #7	DAGLB (ENSBBBG00000001669) #8	KDELR2 (ENSBBBG00000001663) #9	GRID2IP (ENSBBBG00000009936) #10	ZDHHC4 (ENSBBBG00000009898) #11	INTS15 (ENSBBBG00000009885) #13	ENSBBBG00000009880 #15	ZNF12 (ENSBBBG00000006926) #17	ENSBBBG00000009865 #18	RBAK (ENSBBBG00000009857) #19	ENSBBBG00000009853	RNF216 (ENSBBBG00000009848) #22	FSCN1 (ENSBBBG00000009842) #23	ENSBBBG00000009839	ACTB (ENSBBBG00000009838) #24	FBXL18 (ENSBBBG00000009835) #25	TNRC18 (ENSBBBG00000009831) #26	SLC29A4 (ENSBBBG00000001639) #27	WIPI2 (ENSBBBG00000009815) #28	ENSBBBG00000009797 #31	ENSBBBG00000001631 #33	SDK1 (ENSBBBG00000009770) #34
Siberian musk deer	MODERN SPECIES	1230	CYTH3 (ENSMMSG00000016610)	ENSMMSG00000016775	ENSMMSG00000016833	ENSMMSG00000016866	DAGLB (ENSMMSG00000016939) #8	KDELR2 (ENSMMSG00000017019) #9	GRID2IP (ENSMMSG00000017080) #10	ENSMMSG00000017493 #11	INTS15 (ENSMMSG00000017528) #13	ZNF316 (ENSMMSG00000017659) #15	ZNF12 (ENSMMSG00000017688) #17	ENSMMSG00000017740 #18	RBAK (ENSMMSG00000017783) #19	ENSMMSG00000017828	ENSMMSG00000017847	RNF216 (ENSMMSG00000017884) #22	ENSMMSG00000017948	FSCN1 (ENSMMSG00000017978) #23	ACTB (ENSMMSG00000018023) #24	FBXL18 (ENSMMSG00000018071) #25	TNRC18 (ENSMMSG00000018152) #26	SLC29A4 (ENSMMSG00000018364) #27	WIPI2 (ENSMMSG00000018409) #28	MMD2 (ENSMMSG00000018717) #29	RADIL (ENSMMSG00000018796) #30	PAPOLB (ENSMMSG00000018831) #31	AP5Z1 (ENSMMSG00000018851) #32	FOXK1 (ENSMMSG00000018891) #33	SDK1 (ENSMMSG00000018981) #34	ENSMMSG00000019177	ENSMMSG00000019200
Camelidae	ANCESTRAL SPECIES	24	ENSGT00390000001752	ENSGT00940000157044	ENSGT00440000038159	ENSGT00530000064242.b	ENSGT00940000158139	ENSGT00940000162897	ENSGT00390000008983.b	ENSGT00940000154631	ENSGT00390000003115	ENSGT00950000183018.a.d	ENSGT00940000154303.A.b #19	ENSGT00530000064130	ENSGT00950000182890.A.a.b.b	ENSGT00940000161752	ENSGT00940000164720	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.db #24	ENSGT00390000015109 #25	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551	ENSGT00940000156018.B
Chacoan peccary	MODERN SPECIES	833	EIF2AK1 (ENSCWAG00000010001)	USP42 (ENSCWAG00000009829)	CYTH3 (ENSCWAG00000009772)	FAM220A (ENSCWAG00000009757)	ENSCWAG00000009732	RAC1 (ENSCWAG00000009644) #7	DAGLB (ENSCWAG00000009568) #8	KDELR2 (ENSCWAG00000009516) #9	GRID2IP (ENSCWAG00000008513) #10	ENSCWAG00000008394 #11	INTS15 (ENSCWAG00000008254) #13	ZNF316 (ENSCWAG00000008130) #15	ZNF12 (ENSCWAG00000007983) #17	ENSCWAG00000007902 #18	RBAK (ENSCWAG00000007855) #19	RNF216 (ENSCWAG00000020194) #22	FSCN1 (ENSCWAG00000020177) #23	ACTB (ENSCWAG00000020160) #24	FBXL18 (ENSCWAG00000020141) #25	TNRC18 (ENSCWAG00000019752) #26	SLC29A4 (ENSCWAG00000019677) #27	WIPI2 (ENSCWAG00000019589) #28	MMD2 (ENSCWAG00000019552) #29	PAPOLB (ENSCWAG00000019478) #31	RADIL (ENSCWAG00000019444) #30	AP5Z1 (ENSCWAG00000019415) #32	FOXK1 (ENSCWAG00000019374) #33	SDK1 (ENSCWAG00000017684) #34	CARD11 (ENSCWAG00000017329) #35	GNA12 (ENSCWAG00000017294) #36	AMZ1 (ENSCWAG00000017211) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00510000048032 #22
Common shrew	MODERN SPECIES	11999																RNF216 (ENSSARG00000006295) #22
Hedgehog	MODERN SPECIES	734																RNF216 (ENSEEUG00000002170) #22
Euarchontoglires	ANCESTRAL SPECIES	12	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Euarchontoglires_A	ANCESTRAL SPECIES	12	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Tree shrew	MODERN SPECIES	2699																RNF216 (ENSTBEG00000007443) #22	FSCN1 (ENSTBEG00000007112) #23	FBXL18 (ENSTBEG00000006668) #25
Glires	ANCESTRAL SPECIES	11	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Lagomorpha	ANCESTRAL SPECIES	173		ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00950000183157.a.a.b #23	ENSGT00510000048032 #22	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26
Rabbit	MODERN SPECIES	611									ZNF853 (ENSOCUG00000032099) #14	ZNF316 (ENSOCUG00000029271) #15	ENSOCUG00000029406 #16	ZNF12 (ENSOCUG00000008958) #17	ENSOCUG00000024978 #18	RBAK (ENSOCUG00000016907) ##17	ENSOCUG00000027378 #23	RNF216 (ENSOCUG00000015794) #22	ENSOCUG00000005867 ##24	FBXL18 (ENSOCUG00000006567) #25	TNRC18 (ENSOCUG00000000980) #26
Pika	MODERN SPECIES	5126																ENSOPRG00000007984 #22
Rodentia	ANCESTRAL SPECIES	11	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Rodentia_B	ANCESTRAL SPECIES	29	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Myomorpha	ANCESTRAL SPECIES	31	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Muroidea	ANCESTRAL SPECIES	51	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Muroidea_A	ANCESTRAL SPECIES	27	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Cricetidae	ANCESTRAL SPECIES	27	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592.d #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Cricetidae_B	ANCESTRAL SPECIES	46	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592.d #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Northern American deer mouse	MODERN SPECIES	15	Mcm7 (ENSPEMG00000004759)	Cops6 (ENSPEMG00000000314)	Zfp113 (ENSPEMG00000018945)	Zscan21 (ENSPEMG00000018646)	Zkscan1 (ENSPEMG00000029949)	ENSPEMG00000026222	ENSPEMG00000030535	Azgp1 (ENSPEMG00000000368)	Gjc3 (ENSPEMG00000014103)	ENSPEMG00000027825	ENSPEMG00000027943	ENSPEMG00000025053	ENSPEMG00000014657	ENSPEMG00000024220	Or10ah1-ps1 (ENSPEMG00000004666) #20	Rnf216 (ENSPEMG00000024259) #22	Fscn1 (ENSPEMG00000024060) #23	Actb (ENSPEMG00000012952) #24	Fbxl18 (ENSPEMG00000009240) #25	Tnrc18 (ENSPEMG00000010166) #26	Slc29a4 (ENSPEMG00000013403) #27	Wipi2 (ENSPEMG00000023584) #28	Mmd2 (ENSPEMG00000029470) #29	Radil (ENSPEMG00000012299) #30	Ap5z1 (ENSPEMG00000013937) #32	Foxk1 (ENSPEMG00000018098) #33	Sdk1 (ENSPEMG00000021613) #34	Card11 (ENSPEMG00000009509) #35	Gna12 (ENSPEMG00000030767) #36	Amz1 (ENSPEMG00000022718) #37	Brat1 (ENSPEMG00000023595)
Prairie vole	MODERN SPECIES	110	Cyth3 (ENSMOCG00000000807)	ENSMOCG00000019877	ENSMOCG00000013507	Rac1 (ENSMOCG00000016374) #7	Daglb (ENSMOCG00000000178) #8	Kdelr2 (ENSMOCG00000013926) #9	Grid2ip (ENSMOCG00000016662) #10	Zdhhc4 (ENSMOCG00000015434) #11	Ints15 (ENSMOCG00000007513) #13	Zfp316 (ENSMOCG00000009050) #15	Zfp12 (ENSMOCG00000011472) #17	ENSMOCG00000014198 #18	ENSMOCG00000016394 #18	Rbak (ENSMOCG00000019516) #19	Or10ah1-ps1 (ENSMOCG00000006986) #20	Rnf216 (ENSMOCG00000011081) #22	Fscn1 (ENSMOCG00000001115) #23	Actb (ENSMOCG00000004137) #24	Fbxl18 (ENSMOCG00000007883) #25	Tnrc18 (ENSMOCG00000000202) #26	Slc29a4 (ENSMOCG00000020208) #27	Wipi2 (ENSMOCG00000004818) #28	Mmd2 (ENSMOCG00000014153) #29	Radil (ENSMOCG00000003847) #30	Ap5z1 (ENSMOCG00000013579) #32	Foxk1 (ENSMOCG00000005847) #33	Sdk1 (ENSMOCG00000019992) #34	Card11 (ENSMOCG00000012408) #35	Gna12 (ENSMOCG00000010986) #36	Amz1 (ENSMOCG00000011095) #37	Brat1 (ENSMOCG00000022177)
Cricetinae	ANCESTRAL SPECIES	19	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592.d #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Chinese hamster chok1gshd	MODERN SPECIES	130	ENSCGRG00001022741	ENSCGRG00001016103	Rac1 (ENSCGRG00001014453) #7	Daglb (ENSCGRG00001016453) #8	Kdelr2 (ENSCGRG00001012223) #9	Grid2ip (ENSCGRG00001021698) #10	Zdhhc4 (ENSCGRG00001023712) #11	Ints15 (ENSCGRG00001024717) #13	Zfp853 (ENSCGRG00001024977) #14	Zfp316 (ENSCGRG00001003920) #15	Zfp12 (ENSCGRG00001012589) #17	ENSCGRG00001018273 #18	ENSCGRG00001012184 #18	Rbak (ENSCGRG00001014657) #19	Or10ah1-ps1 (ENSCGRG00001001645) #20	Rnf216 (ENSCGRG00001010303) #22	Fscn1 (ENSCGRG00001011181) #23	Actb (ENSCGRG00001015781) #24	Fbxl18 (ENSCGRG00001023848) #25	Tnrc18 (ENSCGRG00001006767) #26	Slc29a4 (ENSCGRG00001021874) #27	Wipi2 (ENSCGRG00001022387) #28	Mmd2 (ENSCGRG00001024751) #29	Radil (ENSCGRG00001008101) #30	Ap5z1 (ENSCGRG00001023835) #32	Foxk1 (ENSCGRG00001021719) #33	Sdk1 (ENSCGRG00001001779) #34	Card11 (ENSCGRG00001025022) #35	Gna12 (ENSCGRG00001004659) #36	Amz1 (ENSCGRG00001012211) #37	Brat1 (ENSCGRG00001016792)
Golden Hamster	MODERN SPECIES	712	Cyth3 (ENSMAUG00000022079)	ENSMAUG00000016388	ENSMAUG00000004039	Rac1 (ENSMAUG00000017557) #7	Daglb (ENSMAUG00000020489) #8	Kdelr2 (ENSMAUG00000019623) #9	Grid2ip (ENSMAUG00000014248) #10	Zdhhc4 (ENSMAUG00000012510) #11	Ints15 (ENSMAUG00000018145) #13	Zfp853 (ENSMAUG00000016640) #14	Zfp316 (ENSMAUG00000006651) #15	Zfp12 (ENSMAUG00000009697) #17	ENSMAUG00000014029 #18	Rbak (ENSMAUG00000015743) #19	Or10ah1-ps1 (ENSMAUG00000006192) #20	Rnf216 (ENSMAUG00000009736) #22	Fscn1 (ENSMAUG00000021320) #23	Actb (ENSMAUG00000008763) #24	Fbxl18 (ENSMAUG00000012173) #25	Tnrc18 (ENSMAUG00000008219) #26	Slc29a4 (ENSMAUG00000014648) #27	Wipi2 (ENSMAUG00000020521) #28	Mmd2 (ENSMAUG00000020302) #29	Radil (ENSMAUG00000006062) #30	Ap5z1 (ENSMAUG00000009664) #32	Foxk1 (ENSMAUG00000013150) #33	Sdk1 (ENSMAUG00000017857) #34	Card11 (ENSMAUG00000018502) #35	Gna12 (ENSMAUG00000007824) #36	Amz1 (ENSMAUG00000019782) #37	Brat1 (ENSMAUG00000016434)
Murinae	ANCESTRAL SPECIES	28	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00960000191491	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Mus	ANCESTRAL SPECIES	17	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014156	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00960000191491	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000155825	ENSGT00390000014156	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.q.a #18	ENSGT00940000154173.A.r #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00960000191491	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000155825	ENSGT00390000014156.e	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.q.a #18	ENSGT00940000154173.A.r #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00960000191491	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Mouse	MODERN SPECIES	14	Fam220a (ENSMUSG00000083012)	Fam220a (ENSMUSG00000118332)	Rac1 (ENSMUSG00000001847) #7	Daglb (ENSMUSG00000039206) #8	Kdelr2 (ENSMUSG00000079111) #9	Grid2ip (ENSMUSG00000010825) #10	Zdhhc4 (ENSMUSG00000001844) #11	Ints15 (ENSMUSG00000039244) #13	Zfp853 (ENSMUSG00000093910) #14	Zfp316 (ENSMUSG00000046658) #15	Zfp12 (ENSMUSG00000029587) #17	Spdye4a (ENSMUSG00000039296) #18	Spdye4b (ENSMUSG00000029586) #18	Rbak (ENSMUSG00000061898) #19	Or10ah1-ps1 (ENSMUSG00000090981) #20	Rnf216 (ENSMUSG00000045078) #22	Fscn1 (ENSMUSG00000029581) #23	Actb (ENSMUSG00000029580) #24	Fbxl18 (ENSMUSG00000066640) #25	Tnrc18 (ENSMUSG00000039477) #26	Slc29a4 (ENSMUSG00000050822) #27	Wipi2 (ENSMUSG00000029578) #28	Mmd2 (ENSMUSG00000039533) #29	Papolb (ENSMUSG00000074817) #31	Radil (ENSMUSG00000029576) #30	Ap5z1 (ENSMUSG00000039623) #32	Foxk1 (ENSMUSG00000056493) #33	Sdk1 (ENSMUSG00000039683) #34	Card11 (ENSMUSG00000036526) #35	Gna12 (ENSMUSG00000000149) #36	Amz1 (ENSMUSG00000050022) #37
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.q.a #18	ENSGT00940000154173.A.r #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00960000191491	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Steppe mouse	MODERN SPECIES	3370	ENSMSIG00000029411	ENSMSIG00000029413	ENSMSIG00000029415	ENSMSIG00000029417	Daglb (ENSMSIG00000029420) #8	Kdelr2 (ENSMSIG00000029426) #9	Grid2ip (ENSMSIG00000029430) #10	ENSMSIG00000029458	ENSMSIG00000029463 #13	ENSMSIG00000029473 #14	Zfp316 (ENSMSIG00000029479) #15	Zfp12 (ENSMSIG00000029485) #17	ENSMSIG00000029492 #18	Rbak (ENSMSIG00000029498) #19	Or10ah1-ps1 (ENSMSIG00000029500) #20	Rnf216 (ENSMSIG00000029504) #22	Fscn1 (ENSMSIG00000029517) #23	Actb (ENSMSIG00000029528) #24	Fbxl18 (ENSMSIG00000029536) #25	Tnrc18 (ENSMSIG00000029541) #26	Slc29a4 (ENSMSIG00000029628) #27	Wipi2 (ENSMSIG00000029635) #28	ENSMSIG00000029641	Mmd2 (ENSMSIG00000029643) #29	Radil (ENSMSIG00000029644) #30	Ap5z1 (ENSMSIG00000029660) #32	ENSMSIG00000029668	Foxk1 (ENSMSIG00000029669) #33	Sdk1 (ENSMSIG00000029675) #34	Card11 (ENSMSIG00000029725) #35	ENSMSIG00000029746 #36
spretus	MODERN SPECIES	14	Usp42 (MGP_SPRETEiJ_G0028989)	Cyth3 (MGP_SPRETEiJ_G0028988)	MGP_SPRETEiJ_G0028987	Rac1 (MGP_SPRETEiJ_G0028986) #7	Daglb (MGP_SPRETEiJ_G0028985) #8	Kdelr2 (MGP_SPRETEiJ_G0028984) #9	Grid2ip (MGP_SPRETEiJ_G0028983) #10	Zdhhc4 (MGP_SPRETEiJ_G0028982) #11	Ints15 (MGP_SPRETEiJ_G0028981) #13	MGP_SPRETEiJ_G0028980 #14	Zfp316 (MGP_SPRETEiJ_G0028979) #15	Zfp12 (MGP_SPRETEiJ_G0028978) #17	Spdye4a (MGP_SPRETEiJ_G0028977) #18	MGP_SPRETEiJ_G0028976 #18	Rbak (MGP_SPRETEiJ_G0028975) #19	Rnf216 (MGP_SPRETEiJ_G0028974) #22	Fscn1 (MGP_SPRETEiJ_G0028973) #23	MGP_SPRETEiJ_G0028972 #24	Fbxl18 (MGP_SPRETEiJ_G0028971) #25	Tnrc18 (MGP_SPRETEiJ_G0028970) #26	Slc29a4 (MGP_SPRETEiJ_G0028969) #27	Wipi2 (MGP_SPRETEiJ_G0028968) #28	Mmd2 (MGP_SPRETEiJ_G0028967) #29	Papolb (MGP_SPRETEiJ_G0028966) #31	Radil (MGP_SPRETEiJ_G0028965) #30	Ap5z1 (MGP_SPRETEiJ_G0028964) #32	Foxk1 (MGP_SPRETEiJ_G0028963) #33	Sdk1 (MGP_SPRETEiJ_G0028962) #34	Card11 (MGP_SPRETEiJ_G0028961) #35	Gna12 (MGP_SPRETEiJ_G0028960) #36	Amz1 (MGP_SPRETEiJ_G0028959) #37
Ryukyu mouse	MODERN SPECIES	14	Usp42 (MGP_CAROLIEiJ_G0027985)	Cyth3 (MGP_CAROLIEiJ_G0027984)	MGP_CAROLIEiJ_G0027983	Rac1 (MGP_CAROLIEiJ_G0027982) #7	Daglb (MGP_CAROLIEiJ_G0027981) #8	Kdelr2 (MGP_CAROLIEiJ_G0027980) #9	Grid2ip (MGP_CAROLIEiJ_G0027979) #10	Zdhhc4 (MGP_CAROLIEiJ_G0027978) #11	Ints15 (MGP_CAROLIEiJ_G0027977) #13	MGP_CAROLIEiJ_G0027976 #14	Zfp316 (MGP_CAROLIEiJ_G0027975) #15	Zfp12 (MGP_CAROLIEiJ_G0027974) #17	Spdye4a (MGP_CAROLIEiJ_G0027973) #18	MGP_CAROLIEiJ_G0027972 #18	Rbak (MGP_CAROLIEiJ_G0027971) #19	Rnf216 (MGP_CAROLIEiJ_G0027970) #22	Fscn1 (MGP_CAROLIEiJ_G0027969) #23	MGP_CAROLIEiJ_G0027968 #24	Fbxl18 (MGP_CAROLIEiJ_G0027967) #25	Tnrc18 (MGP_CAROLIEiJ_G0027966) #26	Slc29a4 (MGP_CAROLIEiJ_G0027965) #27	Wipi2 (MGP_CAROLIEiJ_G0027964) #28	Mmd2 (MGP_CAROLIEiJ_G0027963) #29	Papolb (MGP_CAROLIEiJ_G0027962) #31	Radil (MGP_CAROLIEiJ_G0027961) #30	Ap5z1 (MGP_CAROLIEiJ_G0027960) #32	Foxk1 (MGP_CAROLIEiJ_G0027959) #33	Sdk1 (MGP_CAROLIEiJ_G0027958) #34	Card11 (MGP_CAROLIEiJ_G0027957) #35	Gna12 (MGP_CAROLIEiJ_G0027956) #36	Amz1 (MGP_CAROLIEiJ_G0027955) #37
Shrew mouse	MODERN SPECIES	15	Usp42 (MGP_PahariEiJ_G0024557)	Cyth3 (MGP_PahariEiJ_G0024556)	MGP_PahariEiJ_G0024555	Rac1 (MGP_PahariEiJ_G0024554) #7	Daglb (MGP_PahariEiJ_G0024553) #8	Kdelr2 (MGP_PahariEiJ_G0024552) #9	Grid2ip (MGP_PahariEiJ_G0024551) #10	Zdhhc4 (MGP_PahariEiJ_G0024550) #11	Ints15 (MGP_PahariEiJ_G0024549) #13	MGP_PahariEiJ_G0024548 #14	Zfp316 (MGP_PahariEiJ_G0024547) #15	Zfp12 (MGP_PahariEiJ_G0024546) #17	MGP_PahariEiJ_G0024545 #18	MGP_PahariEiJ_G0024544 #18	Rbak (MGP_PahariEiJ_G0024543) #19	Rnf216 (MGP_PahariEiJ_G0024542) #22	Fscn1 (MGP_PahariEiJ_G0024541) #23	MGP_PahariEiJ_G0024540 #24	Fbxl18 (MGP_PahariEiJ_G0024539) #25	Tnrc18 (MGP_PahariEiJ_G0024538) #26	Slc29a4 (MGP_PahariEiJ_G0024537) #27	Wipi2 (MGP_PahariEiJ_G0024536) #28	Mmd2 (MGP_PahariEiJ_G0024535) #29	Papolb (MGP_PahariEiJ_G0024534) #31	Radil (MGP_PahariEiJ_G0024533) #30	Ap5z1 (MGP_PahariEiJ_G0024532) #32	Foxk1 (MGP_PahariEiJ_G0024531) #33	Sdk1 (MGP_PahariEiJ_G0024530) #34	Card11 (MGP_PahariEiJ_G0024529) #35	Gna12 (MGP_PahariEiJ_G0024528) #36	Amz1 (MGP_PahariEiJ_G0024527) #37
Rat	MODERN SPECIES	3	Fam220a (ENSRNOG00000024605)	ENSRNOG00000065731	Rac1 (ENSRNOG00000001068) #7	Daglb (ENSRNOG00000001079) #8	Kdelr2 (ENSRNOG00000001083) #9	Grid2ip (ENSRNOG00000030927) #10	Zdhhc4 (ENSRNOG00000051699) #11	Ints15 (ENSRNOG00000024567) #13	Zfp853 (ENSRNOG00000030579) #14	Zfp316 (ENSRNOG00000001094) #15	Zfp12 (ENSRNOG00000006958) #17	Spdye4 (ENSRNOG00000058563) #18	Rbak (ENSRNOG00000001099) #19	AABR07072272.1 (ENSRNOG00000029560)	LOC103693627 (ENSRNOG00000024527) #20	Rnf216 (ENSRNOG00000001101) #22	Fscn1 (ENSRNOG00000056585) #23	Actb (ENSRNOG00000034254) #24	Fbxl18 (ENSRNOG00000001117) #25	Tnrc18 (ENSRNOG00000024482) #26	Slc29a4 (ENSRNOG00000001115) #27	Wipi2 (ENSRNOG00000001114) #28	Mmd2 (ENSRNOG00000001113) #29	Radil (ENSRNOG00000024456) #30	AABR07035428.2 (ENSRNOG00000056768) #32	AABR07035428.3 (ENSRNOG00000059768)	Foxk1 (ENSRNOG00000001104) #33	Sdk1 (ENSRNOG00000001103) #34	ENSRNOG00000069236	Card11 (ENSRNOG00000024277) #35	Gna12 (ENSRNOG00000001235) #36
Upper Galilee mountains blind mole rat	MODERN SPECIES	1579													ENSNGAG00000010950 #18	Rbak (ENSNGAG00000000256) #19	Or10ah1-ps1 (ENSNGAG00000004996) #20	Rnf216 (ENSNGAG00000005654) #22	Fscn1 (ENSNGAG00000003408) #23	ENSNGAG00000012568 #24	Fbxl18 (ENSNGAG00000014197) #25	Tnrc18 (ENSNGAG00000019245) #26	Slc29a4 (ENSNGAG00000017204) #27	Wipi2 (ENSNGAG00000012058) #28	Mmd2 (ENSNGAG00000001256) #29	Radil (ENSNGAG00000011431) #30	Ap5z1 (ENSNGAG00000014450) #32	Foxk1 (ENSNGAG00000018478) #33	Sdk1 (ENSNGAG00000019605) #34	Card11 (ENSNGAG00000016362) #35	Gna12 (ENSNGAG00000016379) #36	Amz1 (ENSNGAG00000020374) #37	Brat1 (ENSNGAG00000019880)
Lesser Egyptian jerboa	MODERN SPECIES	203																Rnf216 (ENSJJAG00000018571) #22	Fscn1 (ENSJJAG00000019494) #23	Actb (ENSJJAG00000018929) #24	Fbxl18 (ENSJJAG00000019235) #25	Tnrc18 (ENSJJAG00000000131) #26	Slc29a4 (ENSJJAG00000009846) #27	Wipi2 (ENSJJAG00000011852) #28	Mmd2 (ENSJJAG00000013135) #29	Radil (ENSJJAG00000018039) #30	Papolb (ENSJJAG00000012212) #31	Ap5z1 (ENSJJAG00000012710) #32	Foxk1 (ENSJJAG00000013688) #33	Sdk1 (ENSJJAG00000018030) #34	Card11 (ENSJJAG00000023880) #35	Gna12 (ENSJJAG00000018748) #36	Amz1 (ENSJJAG00000019187) #37
Kangaroo rat	MODERN SPECIES	387	Eif2ak1 (ENSDORG00000016271)	ENSDORG00000025319	Cyth3 (ENSDORG00000024524)	ENSDORG00000028442	Rac1 (ENSDORG00000014388) #7	Daglb (ENSDORG00000002646) #8	Kdelr2 (ENSDORG00000012464) #9	Grid2ip (ENSDORG00000001187) #10	Zdhhc4 (ENSDORG00000025226) #11	Ints15 (ENSDORG00000015054) #13	ENSDORG00000023712	Zfp316 (ENSDORG00000023753) #15	Zfp12 (ENSDORG00000005742) #17	ENSDORG00000025580 #18	Rbak (ENSDORG00000023872) #19	Rnf216 (ENSDORG00000010835) #22	Fscn1 (ENSDORG00000025729) #23	Actb (ENSDORG00000010079) #24	Fbxl18 (ENSDORG00000010081) #25	Tnrc18 (ENSDORG00000029645) #26	Slc29a4 (ENSDORG00000003898) #27	Wipi2 (ENSDORG00000012212) #28	Mmd2 (ENSDORG00000011018) #29	Papolb (ENSDORG00000001140) #31	Radil (ENSDORG00000011014) #30	Ap5z1 (ENSDORG00000011010) #32	Foxk1 (ENSDORG00000011009) #33	Upk3b (ENSDORG00000007552)	Sdk1 (ENSDORG00000003865) #34	Card11 (ENSDORG00000005755) #35	Gna12 (ENSDORG00000028435) #36
Rodentia_A	ANCESTRAL SPECIES	10	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Hystricomorpha	ANCESTRAL SPECIES	17	ENSGT00940000161571	ENSGT00940000161420	ENSGT00940000160222	ENSGT00390000015743	ENSGT00940000160044	ENSGT00940000153861.a	ENSGT00390000000324	ENSGT00940000161391	ENSGT00390000001316	ENSGT00730000111241	ENSGT00390000000341	ENSGT00460000041594	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Hystricomorpha_a	ANCESTRAL SPECIES	16	ENSGT00940000161571	ENSGT00940000161420	ENSGT00940000160222	ENSGT00390000015743	ENSGT00940000160044	ENSGT00940000153861.a	ENSGT00390000000324	ENSGT00940000161391	ENSGT00390000001316	ENSGT00730000111241	ENSGT00390000000341	ENSGT00460000041594	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00940000154173.A #18	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Guinea pig	MODERN SPECIES	30	MICALL2 (ENSCPOG00000005426)	INTS1 (ENSCPOG00000002140)	MAFK (ENSCPOG00000037640)	TMEM184A (ENSCPOG00000019672)	PSMG3 (ENSCPOG00000031079)	ELFN1 (ENSCPOG00000033969)	MAD1L1 (ENSCPOG00000002556)	MRM2 (ENSCPOG00000020743)	NUDT1 (ENSCPOG00000014567)	SNX8 (ENSCPOG00000014569)	ENSCPOG00000037067	ENSCPOG00000024956 #18	RBAK (ENSCPOG00000009230) #19	ENSCPOG00000021697 #20	ENSCPOG00000019998 #20	RNF216 (ENSCPOG00000004858) #22	FSCN1 (ENSCPOG00000008011) #23	ACTB (ENSCPOG00000013467) #24	FBXL18 (ENSCPOG00000009042) #25	TNRC18 (ENSCPOG00000034730) #26	SLC29A4 (ENSCPOG00000020448) #27	WIPI2 (ENSCPOG00000004698) #28	ENSCPOG00000034159 #29	ENSCPOG00000012541	ENSCPOG00000009838	ENSCPOG00000036310	BRAT1 (ENSCPOG00000002849)	AMZ1 (ENSCPOG00000008433) #37	GNA12 (ENSCPOG00000001774) #36	CARD11 (ENSCPOG00000003908) #35	SDK1 (ENSCPOG00000014956) #34
Hystricomorpha_b	ANCESTRAL SPECIES	55	ENSGT00940000154307.B	ENSGT00940000161571	ENSGT00940000161420	ENSGT00940000160222	ENSGT00390000015743	ENSGT00940000160044	ENSGT00940000153861.a	ENSGT00390000000324	ENSGT00940000161391	ENSGT00390000001316	ENSGT00730000111241	ENSGT00390000000341	ENSGT00460000041594	ENSGT00940000154303.A.b #19	ENSGT00940000154173.A #18	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Long-tailed chinchilla	MODERN SPECIES	167	TTYH3 (ENSCLAG00000010104)	ENSCLAG00000008881	BRAT1 (ENSCLAG00000006161)	ENSCLAG00000008719	AMZ1 (ENSCLAG00000011572) #37	GNA12 (ENSCLAG00000009938) #36	CARD11 (ENSCLAG00000006718) #35	SDK1 (ENSCLAG00000008559) #34	FOXK1 (ENSCLAG00000007995) #33	AP5Z1 (ENSCLAG00000006222) #32	RADIL (ENSCLAG00000005480) #30	MMD2 (ENSCLAG00000004912) #29	PAPOLB (ENSCLAG00000004689) #31	ENSCLAG00000008578 #18	RBAK (ENSCLAG00000010914) #19	RNF216 (ENSCLAG00000009524) #22	FSCN1 (ENSCLAG00000013884) #23	ACTB (ENSCLAG00000013196) #24	FBXL18 (ENSCLAG00000008640) #25	TNRC18 (ENSCLAG00000014952) #26	SLC29A4 (ENSCLAG00000012460) #27	WIPI2 (ENSCLAG00000012307) #28	ENSCLAG00000017774	SNX8 (ENSCLAG00000009295)	NUDT1 (ENSCLAG00000011039)	MAD1L1 (ENSCLAG00000010531)	ELFN1 (ENSCLAG00000010408)	PSMG3 (ENSCLAG00000010038)	TMEM184A (ENSCLAG00000008182)	MAFK (ENSCLAG00000007943)	INTS1 (ENSCLAG00000005829)
Degu	MODERN SPECIES	72	UNCX (ENSODEG00000011386)	ENSODEG00000008936	INTS1 (ENSODEG00000011219)	MAFK (ENSODEG00000009150)	TMEM184A (ENSODEG00000009725)	PSMG3 (ENSODEG00000009063)	ELFN1 (ENSODEG00000009903)	MAD1L1 (ENSODEG00000010524)	ENSODEG00000009300	NUDT1 (ENSODEG00000009745)	SNX8 (ENSODEG00000010008)	ENSODEG00000011761	ENSODEG00000012449	RBAK (ENSODEG00000010188) #19	ENSODEG00000011151 #18	RNF216 (ENSODEG00000014191) #22	FSCN1 (ENSODEG00000012533) #23	FBXL18 (ENSODEG00000009122) #25	TNRC18 (ENSODEG00000013742) #26	SLC29A4 (ENSODEG00000009566) #27	WIPI2 (ENSODEG00000011432) #28	MMD2 (ENSODEG00000011588) #29	RADIL (ENSODEG00000009864) #30	PAPOLB (ENSODEG00000009844) #31	AP5Z1 (ENSODEG00000010551) #32	FOXK1 (ENSODEG00000010567) #33	SDK1 (ENSODEG00000010378) #34	ENSODEG00000010041	CARD11 (ENSODEG00000009936) #35	GNA12 (ENSODEG00000011099) #36	ENSODEG00000012047
Naked mole-rat female	MODERN SPECIES		GPER1 (ENSHGLG00000007436)	ZFAND2A (ENSHGLG00000036206)	UNCX (ENSHGLG00000013399)	MICALL2 (ENSHGLG00000014977)	INTS1 (ENSHGLG00000015162)	MAFK (ENSHGLG00000044774)	TMEM184A (ENSHGLG00000018951)	PSMG3 (ENSHGLG00000050465)	ELFN1 (ENSHGLG00000013940)	MAD1L1 (ENSHGLG00000018905)	FTSJ2 (ENSHGLG00000011288)	NUDT1 (ENSHGLG00000045244)	ENSHGLG00000008199	ENSHGLG00000048377 #19	ENSHGLG00000015822 #20	RNF216 (ENSHGLG00000012663) #22	ENSHGLG00000018972	FSCN1 (ENSHGLG00000013742) #23	ENSHGLG00000050243	ACTB (ENSHGLG00000009651) #24	FBXL18 (ENSHGLG00000043138) #25	SLC29A4 (ENSHGLG00000009672) #27	WIPI2 (ENSHGLG00000006000) #28	RADIL (ENSHGLG00000011063) #30	AP5Z1 (ENSHGLG00000008267) #32	FOXK1 (ENSHGLG00000015239) #33	ENSHGLG00000033614	SDK1 (ENSHGLG00000014065) #34	ENSHGLG00000034557	ENSHGLG00000039944	ENSHGLG00000004410
Sciuridae	ANCESTRAL SPECIES	49					ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A.i.b #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	9	ENSSVLG00005023902 #18	ENSSVLG00005023959 #18	KDELR2 (ENSSVLG00005024008) #9	GRID2IP (ENSSVLG00005024088) #10	ENSSVLG00005024387	ZDHHC4 (ENSSVLG00005024406) #11	INTS15 (ENSSVLG00005024423) #13	ZNF853 (ENSSVLG00005024451) #14	ENSSVLG00005024464 #15	ENSSVLG00005024489 #16	ENSSVLG00005024527 #17	RBAK (ENSSVLG00005024552) #19	ENSSVLG00005024561	ENSSVLG00005024568	ENSSVLG00005024575	ENSSVLG00005024604 #22	FSCN1 (ENSSVLG00005024706) #23	ACTB (ENSSVLG00005024720) #24	FBXL18 (ENSSVLG00005024737) #25	TNRC18 (ENSSVLG00005024777) #26	SLC29A4 (ENSSVLG00005024899) #27	WIPI2 (ENSSVLG00005017246) #28	MMD2 (ENSSVLG00005017856) #29	RADIL (ENSSVLG00005017983) #30	ENSSVLG00005018177 #31	AP5Z1 (ENSSVLG00005018224) #32	FOXK1 (ENSSVLG00005018254) #33	SDK1 (ENSSVLG00005018436) #34	CARD11 (ENSSVLG00005019511) #35	GNA12 (ENSSVLG00005019630) #36	DAGLB (ENSSVLG00005019691) #8
Eurasian red squirrel	MODERN SPECIES	13	CDHR1 (ENSSVLG00005003916)	LRIT2 (ENSSVLG00005003885)	LRIT1 (ENSSVLG00005003867)	RGR (ENSSVLG00005003817)	CCSER2 (ENSSVLG00005003778)	ENSSVLG00005003751	GRID1 (ENSSVLG00005003709)	WAPL (ENSSVLG00005003658)	OPN4 (ENSSVLG00005003591)	LDB3 (ENSSVLG00005003371)	ENSSVLG00005003290	BMPR1A (ENSSVLG00005003269)	MMRN2 (ENSSVLG00005003238)	SNCG (ENSSVLG00005003209)	ADIRF (ENSSVLG00005003188)	ENSSVLG00005003177 #22	ENSSVLG00005003158	ENSSVLG00005003124	ENSSVLG00005003056	ENSSVLG00005003008	GPRIN2 (ENSSVLG00005002992)	ENSSVLG00005002980	ENSSVLG00005002964	CH25H (ENSSVLG00005002954)	ENSSVLG00005002938	LIPA (ENSSVLG00005002910)	ENSSVLG00005002898	IFIT2 (ENSSVLG00005002885)	ENSSVLG00005002871	ENSSVLG00005002858	ENSSVLG00005002836
Marmotini	ANCESTRAL SPECIES	70					ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A.i.b #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Marmotini_b	ANCESTRAL SPECIES	176					ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A.i.b #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.i #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34
Squirrel	MODERN SPECIES	365				KDELR2 (ENSSTOG00000006820) #9	GRID2IP (ENSSTOG00000028699) #10	ZDHHC4 (ENSSTOG00000011605) #11	INTS15 (ENSSTOG00000011614) #13	ZNF853 (ENSSTOG00000019895) #14	ZNF316 (ENSSTOG00000027773) #15	ZNF12 (ENSSTOG00000022132) #17	ENSSTOG00000000412 #18	ENSSTOG00000020799	RBAK (ENSSTOG00000031749) #19	ENSSTOG00000030067	ENSSTOG00000022953 #20	RNF216 (ENSSTOG00000004045) #22	FSCN1 (ENSSTOG00000020923) #23	ACTB (ENSSTOG00000014797) #24	FBXL18 (ENSSTOG00000028236) #25	TNRC18 (ENSSTOG00000026995) #26	SLC29A4 (ENSSTOG00000001393) #27	WIPI2 (ENSSTOG00000001382) #28	MMD2 (ENSSTOG00000023967) #29	RADIL (ENSSTOG00000000578) #30	AP5Z1 (ENSSTOG00000027215) #32	FOXK1 (ENSSTOG00000000564) #33	SDK1 (ENSSTOG00000002001) #34
Arctic ground squirrel	MODERN SPECIES	352				ENSUPAG00010011008 #18	KDELR2 (ENSUPAG00010011015) #9	GRID2IP (ENSUPAG00010011026) #10	ZDHHC4 (ENSUPAG00010011113) #11	INTS15 (ENSUPAG00010011121) #13	ZNF853 (ENSUPAG00010011127) #14	ZNF316 (ENSUPAG00010011132) #15	ENSUPAG00010011142 #16	ZNF12 (ENSUPAG00010011271) #17	ENSUPAG00010011282 #18	RBAK (ENSUPAG00010011305) #19	ENSUPAG00010011311 #20	RNF216 (ENSUPAG00010011321) #22	FSCN1 (ENSUPAG00010011357) #23	ENSUPAG00010011369 #24	FBXL18 (ENSUPAG00010011378) #25	TNRC18 (ENSUPAG00010011390) #26	SLC29A4 (ENSUPAG00010011500) #27	WIPI2 (ENSUPAG00010011514) #28	MMD2 (ENSUPAG00010011575) #29	RADIL (ENSUPAG00010011588) #30	ENSUPAG00010011624 #31	AP5Z1 (ENSUPAG00010011633) #32	FOXK1 (ENSUPAG00010011657) #33	SDK1 (ENSUPAG00010011682) #34
Alpin marmot	MODERN SPECIES	77	EIF3B (ENSMMMG00000008158)	ENSMMMG00000008099 #18	KDELR2 (ENSMMMG00000008094) #9	GRID2IP (ENSMMMG00000007901) #10	ZDHHC4 (ENSMMMG00000007874) #11	INTS15 (ENSMMMG00000007856) #13	ZNF853 (ENSMMMG00000007842) #14	ZNF316 (ENSMMMG00000007819) #15	ENSMMMG00000007783 #16	ZNF12 (ENSMMMG00000007770) #17	ENSMMMG00000007683 #18	RBAK (ENSMMMG00000007655) #19	ENSMMMG00000007646	ENSMMMG00000007638	ENSMMMG00000007625 #20	RNF216 (ENSMMMG00000007582) #22	ACTB (ENSMMMG00000007553) #24	FBXL18 (ENSMMMG00000007533) #25	TNRC18 (ENSMMMG00000007352) #26	SLC29A4 (ENSMMMG00000007333) #27	WIPI2 (ENSMMMG00000007313) #28	MMD2 (ENSMMMG00000007303) #29	PAPOLB (ENSMMMG00000007296) #31	RADIL (ENSMMMG00000007258) #30	AP5Z1 (ENSMMMG00000007212) #32	FOXK1 (ENSMMMG00000007197) #33	SDK1 (ENSMMMG00000007072) #34	CARD11 (ENSMMMG00000007041) #35	GNA12 (ENSMMMG00000007029) #36	ENSMMMG00000007019 #18	DAGLB (ENSMMMG00000006987) #8
Primates	ANCESTRAL SPECIES	11	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Strepsirrhini	ANCESTRAL SPECIES	14	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154303.A.b #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Lemuriformes	ANCESTRAL SPECIES	6	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Mouse lemur	MODERN SPECIES	8	ENSMICG00000004365	RAC1 (ENSMICG00000047004) #7	DAGLB (ENSMICG00000004369) #8	KDELR2 (ENSMICG00000014334) #9	GRID2IP (ENSMICG00000028041) #10	ZDHHC4 (ENSMICG00000014356) #11	INTS15 (ENSMICG00000014369) #13	ZNF853 (ENSMICG00000034424) #14	ZNF316 (ENSMICG00000045243) #15	ENSMICG00000043386 #16	ENSMICG00000029369	ENSMICG00000008171 #17	ENSMICG00000043328	RBAK (ENSMICG00000044579) #19	ENSMICG00000045766	RNF216 (ENSMICG00000010220) #22	FSCN1 (ENSMICG00000010211) #23	ACTB (ENSMICG00000002791) #24	FBXL18 (ENSMICG00000027885) #25	TNRC18 (ENSMICG00000028455) #26	SLC29A4 (ENSMICG00000008173) #27	WIPI2 (ENSMICG00000008162) #28	MMD2 (ENSMICG00000008159) #29	ENSMICG00000042211 #31	RADIL (ENSMICG00000008147) #30	AP5Z1 (ENSMICG00000008137) #32	FOXK1 (ENSMICG00000008124) #33	SDK1 (ENSMICG00000010289) #34	CARD11 (ENSMICG00000000901) #35	GNA12 (ENSMICG00000000898) #36	AMZ1 (ENSMICG00000000895) #37
Lemuriformes_a	ANCESTRAL SPECIES	16	ENSGT00940000155825	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00960000187139	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Greater bamboo lemur	MODERN SPECIES	887												ENSPSMG00000010954 #18	ENSPSMG00000010949	RBAK (ENSPSMG00000010939) #19	ENSPSMG00000010931	RNF216 (ENSPSMG00000010914) #22	ENSPSMG00000010885	FSCN1 (ENSPSMG00000010879) #23	ACTB (ENSPSMG00000010844) #24	FBXL18 (ENSPSMG00000010818) #25	ENSPSMG00000010800
Coquerels sifaka	MODERN SPECIES	155	EIF2AK1 (ENSPCOG00000024245)	ANKRD61 (ENSPCOG00000015357)	USP42 (ENSPCOG00000018641)	CYTH3 (ENSPCOG00000024782)	ENSPCOG00000024195	RAC1 (ENSPCOG00000020411) #7	DAGLB (ENSPCOG00000001509) #8	KDELR2 (ENSPCOG00000019889) #9	GRID2IP (ENSPCOG00000025659) #10	ZDHHC4 (ENSPCOG00000023144) #11	INTS15 (ENSPCOG00000007596) #13	ZNF853 (ENSPCOG00000000221) #14	ZNF316 (ENSPCOG00000026860) #15	ENSPCOG00000027965 #17	RBAK (ENSPCOG00000028132) #19	RNF216 (ENSPCOG00000013560) #22	FSCN1 (ENSPCOG00000014914) #23	ACTB (ENSPCOG00000013116) #24	FBXL18 (ENSPCOG00000018422) #25	TNRC18 (ENSPCOG00000023756) #26	SLC29A4 (ENSPCOG00000010272) #27	WIPI2 (ENSPCOG00000020471) #28	MMD2 (ENSPCOG00000012905) #29	RADIL (ENSPCOG00000022184) #30	AP5Z1 (ENSPCOG00000009889) #32	FOXK1 (ENSPCOG00000028466) #33	ENSPCOG00000013336	SDK1 (ENSPCOG00000012864) #34	CARD11 (ENSPCOG00000019550) #35	GNA12 (ENSPCOG00000021327) #36	AMZ1 (ENSPCOG00000025686) #37
Bushbaby	MODERN SPECIES	207				ENSOGAG00000025751	RAC1 (ENSOGAG00000017027) #7	DAGLB (ENSOGAG00000017029) #8	KDELR2 (ENSOGAG00000025999) #9	GRID2IP (ENSOGAG00000034523) #10	ZDHHC4 (ENSOGAG00000000437) #11	INTS15 (ENSOGAG00000000438) #13	ZNF316 (ENSOGAG00000028380) #15	ENSOGAG00000025231 #16	ZNF12 (ENSOGAG00000028373) #17	RBAK (ENSOGAG00000006946) #19	ENSOGAG00000027519 #20	RNF216 (ENSOGAG00000006315) #22	FSCN1 (ENSOGAG00000025060) #23	ENSOGAG00000008348 #24	FBXL18 (ENSOGAG00000008341) #25	TNRC18 (ENSOGAG00000027824) #26	SLC29A4 (ENSOGAG00000002865) #27	ENSOGAG00000002862 #28	MMD2 (ENSOGAG00000011163) #29	PAPOLB (ENSOGAG00000031103) #31	ENSOGAG00000016264 #30	AP5Z1 (ENSOGAG00000016256) #32	FOXK1 (ENSOGAG00000016251) #33	ENSOGAG00000032866	SDK1 (ENSOGAG00000007104) #34	CARD11 (ENSOGAG00000006863) #35	GNA12 (ENSOGAG00000006871) #36
Haplorrhini	ANCESTRAL SPECIES	26	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Tarsier	MODERN SPECIES	5280																RNF216 (ENSTSYG00000010069) #22	ENSTSYG00000031806	ENSTSYG00000027599 #23
Simiiformes	ANCESTRAL SPECIES	26	ENSGT00390000014156	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000165394 #16	ENSGT00940000154303.B #17	ENSGT00940000154173.A.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Catarrhini	ANCESTRAL SPECIES	29	ENSGT00910000147151	ENSGT00950000183060.a.a	ENSGT00940000156018.B	ENSGT00390000017551	ENSGT00530000063996.b #37	ENSGT00940000157636 #36	ENSGT00940000158573 #35	ENSGT00940000157747 #34	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00940000157972 #29	ENSGT00940000154173.A.a.c.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00940000157625.b #10	ENSGT00390000004010.a.b.a #9	ENSGT00940000156486 #8	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.b #7	ENSGT00390000014547.c	ENSGT00940000155825	ENSGT00940000154596.b	ENSGT00840000130004	ENSGT00940000157605	ENSGT00390000015826	ENSGT00940000155381	ENSGT00940000159899	ENSGT00390000004713.c	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb.x #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000154303.A.b #19	ENSGT00940000154173.A.a.c.a #18	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34
Gibbon	MODERN SPECIES	7	USP42 (ENSNLEG00000001092)	CYTH3 (ENSNLEG00000001145)	ENSNLEG00000001188	ENSNLEG00000015697 #7	DAGLB (ENSNLEG00000015668) #8	KDELR2 (ENSNLEG00000015662) #9	GRID2IP (ENSNLEG00000015646) #10	ZDHHC4 (ENSNLEG00000015607) #11	INTS15 (ENSNLEG00000015599) #13	ENSNLEG00000015596 #15	ZNF12 (ENSNLEG00000027354) #17	ENSNLEG00000036079	ENSNLEG00000036045	ENSNLEG00000015579	ENSNLEG00000026665	RNF216 (ENSNLEG00000015530) #22	ENSNLEG00000028647 #23	ENSNLEG00000027252	ACTB (ENSNLEG00000015506) #24	ENSNLEG00000031210	ENSNLEG00000027537	WIPI2 (ENSNLEG00000015492) #28	RBAK (ENSNLEG00000030817) #19	ENSNLEG00000036049 #18	MMD2 (ENSNLEG00000015480) #29	RADIL (ENSNLEG00000015475) #30	AP5Z1 (ENSNLEG00000015462) #32	ENSNLEG00000015459 #33	ENSNLEG00000015435 #34	CARD11 (ENSNLEG00000010543) #35	GNA12 (ENSNLEG00000033618) #36
Hominidae	ANCESTRAL SPECIES	26	ENSGT00940000157625.b #10	ENSGT00390000004010.a.b.a #9	ENSGT00940000156486 #8	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00390000014156.c	ENSGT00940000153500.a.a.k.b #7	ENSGT00390000014547.c	ENSGT00940000155825	ENSGT00940000154596.b	ENSGT00840000130004	ENSGT00940000157605	ENSGT00390000015826	ENSGT00940000155381	ENSGT00940000159899	ENSGT00390000004713.c	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb.x #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000154303.A.b #19	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35
Orangutan	MODERN SPECIES	24															ENSPPYG00000031109	RNF216 (ENSPPYG00000017338) #22	FSCN1 (ENSPPYG00000039199) #23	ACTB (ENSPPYG00000017336) #24	FBXL18 (ENSPPYG00000017335) #25	TNRC18 (ENSPPYG00000017332) #26	SLC29A4 (ENSPPYG00000017331) #27	WIPI2 (ENSPPYG00000040908) #28	ENSPPYG00000033860	RBAK (ENSPPYG00000017329) #19	MMD2 (ENSPPYG00000029476) #29	RADIL (ENSPPYG00000017327) #30	ENSPPYG00000040747	AP5Z1 (ENSPPYG00000017326) #32	FOXK1 (ENSPPYG00000017325) #33	SDK1 (ENSPPYG00000017324) #34	CARD11 (ENSPPYG00000017323) #35
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	31	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.a.c.a.a #18	ENSGT00940000155381.s	ENSGT00940000159899	ENSGT00390000004713.c	ENSGT00940000161875.c.a	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.x #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb.x #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000154303.A.b #19	ENSGT00910000146651.a	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34
Homo/Pan group	ANCESTRAL SPECIES	30	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.a.c.a.a #18	ENSGT00940000155381.s	ENSGT00940000159899	ENSGT00390000004713.c	ENSGT00940000161875.c.a	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.x #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb.x #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000154303.A.b #19	ENSGT00910000146651.a	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34
Pan	ANCESTRAL SPECIES	37	ENSGT00940000157625.b #10	ENSGT00390000004010.a.b.a #9	ENSGT00940000156486 #8	ENSGT00940000153500.a.a.k.b #7	ENSGT00390000014547.c	ENSGT00390000014156.c	ENSGT00940000155825	ENSGT00940000154596.b	ENSGT00940000157605	ENSGT00840000130004	ENSGT00390000015826	ENSGT00940000155381.s.a	ENSGT00940000159899	ENSGT00390000004713.c	ENSGT00940000161875.c.a	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.x #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb.x #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000154303.A.b #19	ENSGT00910000146651.a	ENSGT00940000157972 #29	ENSGT00940000164307 #31	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34
Chimpanzee	DUPLICATION
Chimpanzee	MODERN SPECIES	20	PMS2 (ENSPTRG00000018902)	AIMP2 (ENSPTRG00000018903)	ANKRD61 (ENSPTRG00000018905)	EIF2AK1 (ENSPTRG00000018904)	USP42 (ENSPTRG00000018906)	CYTH3 (ENSPTRG00000018907)	ENSPTRG00000028666	RAC1 (ENSPTRG00000018910) #7	ENSPTRG00000051819 #8	ENSPTRG00000043578 #15	ENSPTRG00000018919 #17	ENSPTRG00000018920	ENSPTRG00000051187	ENSPTRG00000048336	OCM (ENSPTRG00000018896)	RNF216 (ENSPTRG00000018894) #22	FSCN1 (ENSPTRG00000018892) #23	ENSPTRG00000052762	ACTB (ENSPTRG00000018890) #24	FBXL18 (ENSPTRG00000018889) #25	TNRC18 (ENSPTRG00000018886) #26	SLC29A4 (ENSPTRG00000018884) #27	WIPI2 (ENSPTRG00000018882) #28	RBAK (ENSPTRG00000018880) #19	MMD2 (ENSPTRG00000018878) #29	PAPOLB (ENSPTRG00000045383) #31	RADIL (ENSPTRG00000018877) #30	AP5Z1 (ENSPTRG00000018876) #32	FOXK1 (ENSPTRG00000018875) #33	SDK1 (ENSPTRG00000018872) #34	CARD11 (ENSPTRG00000018871) #35
Chimpanzee	MODERN SPECIES	608														ENSPTRG00000049134	ENSPTRG00000049686	ENSPTRG00000048429 #22	ENSPTRG00000049607 #23	ENSPTRG00000045496
Bonobo	MODERN SPECIES	20	ENSPPAG00000027476 #13	ENSPPAG00000018724 #12	ZDHHC4 (ENSPPAG00000030859) #11	GRID2IP (ENSPPAG00000004060) #10	ENSPPAG00000038445 #9	DAGLB (ENSPPAG00000031293) #8	ENSPPAG00000032857 #7	ENSPPAG00000042160	CYTH3 (ENSPPAG00000032310)	USP42 (ENSPPAG00000029844)	ANKRD61 (ENSPPAG00000042004)	EIF2AK1 (ENSPPAG00000038784)	AIMP2 (ENSPPAG00000035344)	PMS2 (ENSPPAG00000014830)	ENSPPAG00000033714	RNF216 (ENSPPAG00000032864) #22	ENSPPAG00000041475 #23	ENSPPAG00000033354	ACTB (ENSPPAG00000037371) #24	FBXL18 (ENSPPAG00000027621) #25	ENSPPAG00000040010	SLC29A4 (ENSPPAG00000038957) #27	WIPI2 (ENSPPAG00000035034) #28	RBAK (ENSPPAG00000012357) #19	ENSPPAG00000028399	MMD2 (ENSPPAG00000042041) #29	RADIL (ENSPPAG00000041551) #30	AP5Z1 (ENSPPAG00000034107) #32	FOXK1 (ENSPPAG00000017436) #33	SDK1 (ENSPPAG00000033371) #34	CARD11 (ENSPPAG00000035064) #35
Human	MODERN SPECIES	19	GRID2IP (ENSG00000215045) #10	KDELR2 (ENSG00000136240) #9	DAGLB (ENSG00000164535) #8	RAC1 (ENSG00000136238) #7	SAGSIN1 (ENSG00000286075)	FAM220A (ENSG00000178397)	CYTH3 (ENSG00000008256)	USP42 (ENSG00000106346)	ANKRD61 (ENSG00000157999)	EIF2AK1 (ENSG00000086232)	AIMP2 (ENSG00000106305)	PMS2 (ENSG00000122512)	RSPH10B (ENSG00000155026)	CCZ1 (ENSG00000122674)	OCM (ENSG00000122543)	RNF216 (ENSG00000011275) #22	FSCN1 (ENSG00000075618) #23	ACTB (ENSG00000075624) #24	FBXL18 (ENSG00000155034) #25	TNRC18 (ENSG00000182095) #26	SLC29A4 (ENSG00000164638) #27	WIPI2 (ENSG00000157954) #28	RBAK (ENSG00000146587) #19	RBAK-RBAKDN (ENSG00000272968)	MMD2 (ENSG00000136297) #29	PAPOLB (ENSG00000218823) #31	RADIL (ENSG00000157927) #30	AP5Z1 (ENSG00000242802) #32	FOXK1 (ENSG00000164916) #33	SDK1 (ENSG00000146555) #34	CARD11 (ENSG00000198286) #35
Gorilla	MODERN SPECIES	20	INTS15 (ENSGGOG00000026416) #13	GRID2IP (ENSGGOG00000008503) #10	KDELR2 (ENSGGOG00000042815) #9	DAGLB (ENSGGOG00000003364) #8	RAC1 (ENSGGOG00000026733) #7	FAM220A (ENSGGOG00000003262)	CYTH3 (ENSGGOG00000015376)	USP42 (ENSGGOG00000015369)	ANKRD61 (ENSGGOG00000016229)	EIF2AK1 (ENSGGOG00000016216)	AIMP2 (ENSGGOG00000007974)	PMS2 (ENSGGOG00000007960)	ENSGGOG00000038387	ENSGGOG00000027454	ENSGGOG00000009068	RNF216 (ENSGGOG00000042353) #22	FSCN1 (ENSGGOG00000025593) #23	ENSGGOG00000025778	ACTB (ENSGGOG00000001133) #24	FBXL18 (ENSGGOG00000014037) #25	TNRC18 (ENSGGOG00000011875) #26	ENSGGOG00000011862 #27	WIPI2 (ENSGGOG00000006240) #28	RBAK (ENSGGOG00000008465) #19	ENSGGOG00000027654	MMD2 (ENSGGOG00000012091) #29	RADIL (ENSGGOG00000002691) #30	AP5Z1 (ENSGGOG00000037780) #32	ENSGGOG00000002679 #33	SDK1 (ENSGGOG00000012912) #34	CARD11 (ENSGGOG00000000988) #35
Cercopithecidae	ANCESTRAL SPECIES	35	ENSGT00940000158717	ENSGT00910000147151	ENSGT00950000183060.a.a	ENSGT00940000156018.B	ENSGT00390000017551	ENSGT00530000063996.b #37	ENSGT00940000157636 #36	ENSGT00940000158573 #35	ENSGT00940000157747 #34	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000159293 #30	ENSGT00940000157972 #29	ENSGT00940000154173.A.a.c.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb.v #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28
Cercopithecinae	ANCESTRAL SPECIES	24	ENSGT00940000158717	ENSGT00910000147151	ENSGT00950000183060.a.a	ENSGT00940000156018.B	ENSGT00390000017551	ENSGT00530000063996.b #37	ENSGT00940000157636 #36	ENSGT00940000158573 #35	ENSGT00940000157747 #34	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000159293 #30	ENSGT00940000157972 #29	ENSGT00940000154173.A.a.c.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00940000154172.gb.a	ENSGT00950000182960.a.a.a.a.b.rb.v #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28
Cercopithecinae_a	ANCESTRAL SPECIES	22	ENSGT00940000162164	ENSGT00940000158717	ENSGT00910000147151	ENSGT00950000183060.a.a	ENSGT00940000156018.B	ENSGT00390000017551	ENSGT00530000063996.b #37	ENSGT00940000157636 #36	ENSGT00940000158573 #35	ENSGT00940000157747 #34	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000159293 #30	ENSGT00940000157972 #29	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.v #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28
Cercopithecinae_b	ANCESTRAL SPECIES	74														ENSGT00940000157972 #29	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.v #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537.s.a.a #28
Cercopithecinae_d	ANCESTRAL SPECIES	219													ENSGT00940000157972 #29	ENSGT00940000154173.A.a.c.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00910000147936	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.v #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537.s.a.a #28
Sooty mangabey	MODERN SPECIES	282												ENSCATG00000043339	MMD2 (ENSCATG00000028036) #29	ENSCATG00000032490 #18	RBAK (ENSCATG00000041692) #19	RNF216 (ENSCATG00000030171) #22	FSCN1 (ENSCATG00000035433) #23	ACTB (ENSCATG00000031161) #24	FBXL18 (ENSCATG00000033897) #25	TNRC18 (ENSCATG00000033102) #26	SLC29A4 (ENSCATG00000002188) #27	ENSCATG00000032274 #28
Drill	MODERN SPECIES	1199																RNF216 (ENSMLEG00000037743) #22	ENSMLEG00000028388	FSCN1 (ENSMLEG00000031848) #23	ACTB (ENSMLEG00000038914) #24	ENSMLEG00000041631	ENSMLEG00000000039	SLC29A4 (ENSMLEG00000007690) #27	WIPI2 (ENSMLEG00000033152) #28
Olive baboon	MODERN SPECIES	14	BHLHA15 (ENSPANG00000010823)	LMTK2 (ENSPANG00000023289)	ENSPANG00000033390	ENSPANG00000035903	ENSPANG00000008247	ENSPANG00000051135	ENSPANG00000009446	ENSPANG00000018760	PMS2 (ENSPANG00000000879)	AIMP2 (ENSPANG00000010693)	EIF2AK1 (ENSPANG00000004605)	ANKRD61 (ENSPANG00000009970)	USP42 (ENSPANG00000000532)	CYTH3 (ENSPANG00000015584)	MMD2 (ENSPANG00000015670) #29	RNF216 (ENSPANG00000007249) #22	RBAK (ENSPANG00000015671) #19	FSCN1 (ENSPANG00000009103) #23	ACTB (ENSPANG00000015700) #24	TNRC18 (ENSPANG00000018936) #26	SLC29A4 (ENSPANG00000000676) #27	ENSPANG00000017642 #28	FAM220A (ENSPANG00000046944)	ENSPANG00000033641	RAC1 (ENSPANG00000010758) #7	DAGLB (ENSPANG00000016791) #8	KDELR2 (ENSPANG00000018696) #9	GRID2IP (ENSPANG00000018761) #10	ZDHHC4 (ENSPANG00000015737) #11	INTS15 (ENSPANG00000022201) #13	ZNF853 (ENSPANG00000015668) #14
Macaca	ANCESTRAL SPECIES	3	ENSGT00940000157605	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00910000146965 #12	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.a.c.a #18	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.v #24	ENSGT00390000015109 #25	ENSGT00910000147820	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000154303.A.b #19	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Pig-tailed macaque	MODERN SPECIES	249																RNF216 (ENSMNEG00000027255) #22	FSCN1 (ENSMNEG00000032699) #23	ACTB (ENSMNEG00000033949) #24	FBXL18 (ENSMNEG00000006983) #25	ENSMNEG00000029295	TNRC18 (ENSMNEG00000030110) #26	SLC29A4 (ENSMNEG00000029418) #27	WIPI2 (ENSMNEG00000035019) #28
Macaca_a	ANCESTRAL SPECIES	22	ENSGT00940000157625.b #10	ENSGT00950000183030.m.a.a.b.a.a.a.a	ENSGT00390000004010.a.b.a #9	ENSGT00940000156486 #8	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00390000014156.c	ENSGT00940000155825	ENSGT00940000154596.b	ENSGT00940000157605	ENSGT00840000130004	ENSGT00390000015826	ENSGT00940000155381	ENSGT00940000159899	ENSGT00390000004713.c.g	ENSGT00940000161875	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.v #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000154303.A.b #19	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000161627.a.a.a.a.b.a.a.b.b.b	ENSGT01100000263493.a.a.a.b.a.a.a.b.b.a	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Crab-eating macaque	MODERN SPECIES	13	DAGLB (ENSMFAG00000040592) #8	KDELR2 (ENSMFAG00000038055) #9	ENSMFAG00000054370	ZDHHC4 (ENSMFAG00000002456) #11	INTS15 (ENSMFAG00000037040) #13	ENSMFAG00000054749	ENSMFAG00000065370	ENSMFAG00000048399	ZNF12 (ENSMFAG00000006390) #17	ENSMFAG00000042064 #18	ENSMFAG00000061747	ENSMFAG00000057400	ENSMFAG00000062555	ENSMFAG00000003003	ENSMFAG00000036278	RNF216 (ENSMFAG00000033988) #22	ENSMFAG00000050671	FSCN1 (ENSMFAG00000001015) #23	ACTB (ENSMFAG00000031981) #24	ENSMFAG00000060143	SLC29A4 (ENSMFAG00000039217) #27	WIPI2 (ENSMFAG00000044800) #28	ENSMFAG00000051322	ENSMFAG00000059777	ENSMFAG00000061268	RBAK (ENSMFAG00000062799) #19	MMD2 (ENSMFAG00000045932) #29	ENSMFAG00000060523	ENSMFAG00000047397	ENSMFAG00000051928	ENSMFAG00000052015
Rhesus	MODERN SPECIES	13	FAM220A (ENSMMUG00000014753)	RAC1 (ENSMMUG00000021075) #7	DAGLB (ENSMMUG00000010292) #8	KDELR2 (ENSMMUG00000030415) #9	ENSMMUG00000057114	GRID2IP (ENSMMUG00000021839) #10	ZDHHC4 (ENSMMUG00000015545) #11	INTS15 (ENSMMUG00000015546) #13	ZNF853 (ENSMMUG00000038892) #14	ENSMMUG00000064966	ZNF316 (ENSMMUG00000049742) #15	ZNF12 (ENSMMUG00000012343) #17	ENSMMUG00000022624 #18	ENSMMUG00000062930	ENSMMUG00000056983	RNF216 (ENSMMUG00000000182) #22	FSCN1 (ENSMMUG00000004282) #23	ACTB (ENSMMUG00000011153) #24	TNRC18 (ENSMMUG00000008220) #26	SLC29A4 (ENSMMUG00000008219) #27	WIPI2 (ENSMMUG00000007045) #28	RBAK (ENSMMUG00000039501) #19	MMD2 (ENSMMUG00000011672) #29	RADIL (ENSMMUG00000011232) #30	AP5Z1 (ENSMMUG00000011228) #32	FOXK1 (ENSMMUG00000011227) #33	SDK1 (ENSMMUG00000019724) #34	ENSMMUG00000055884	ENSMMUG00000050115	CARD11 (ENSMMUG00000021650) #35	GNA12 (ENSMMUG00000006460) #36
Vervet Monkey	MODERN SPECIES	20	ANKRD61 (ENSCSAG00000017721)	USP42 (ENSCSAG00000017719)	CYTH3 (ENSCSAG00000017714)	FAM220A (ENSCSAG00000019493)	RAC1 (ENSCSAG00000017712) #7	DAGLB (ENSCSAG00000017706) #8	KDELR2 (ENSCSAG00000017700) #9	GRID2IP (ENSCSAG00000017697) #10	ZDHHC4 (ENSCSAG00000017695) #11	INTS15 (ENSCSAG00000017692) #13	ZNF853 (ENSCSAG00000017691) #14	ZNF316 (ENSCSAG00000017690) #15	ENSCSAG00000017688 #16	ZNF12 (ENSCSAG00000017682) #17	ENSCSAG00000017677 #18	RNF216 (ENSCSAG00000017676) #22	FSCN1 (ENSCSAG00000017673) #23	ENSCSAG00000019494	ENSCSAG00000017672 #24	ENSCSAG00000017671 #24	FBXL18 (ENSCSAG00000017668) #25	TNRC18 (ENSCSAG00000017667) #26	SLC29A4 (ENSCSAG00000017657) #27	WIPI2 (ENSCSAG00000017655) #28	RBAK (ENSCSAG00000017653) #19	ENSCSAG00000017650 #18	MMD2 (ENSCSAG00000017648) #29	RADIL (ENSCSAG00000017644) #30	AP5Z1 (ENSCSAG00000017641) #32	FOXK1 (ENSCSAG00000017639) #33	SDK1 (ENSCSAG00000017635) #34
Rhinopithecus	ANCESTRAL SPECIES	891																ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23
Golden snub-nosed monkey	MODERN SPECIES	1306																ENSRROG00000031470 #22	FSCN1 (ENSRROG00000032418) #23	ENSRROG00000041256	ENSRROG00000028698 #24	TNRC18 (ENSRROG00000038945) #26	SLC29A4 (ENSRROG00000034000) #27	WIPI2 (ENSRROG00000038055) #28
Black snub-nosed monkey	MODERN SPECIES	815																RNF216 (ENSRBIG00000041538) #22	FSCN1 (ENSRBIG00000012233) #23	ACTB (ENSRBIG00000014104) #24	FBXL18 (ENSRBIG00000028880) #25	ENSRBIG00000038507	EFHD1 (ENSRBIG00000036857)	EIF4E2 (ENSRBIG00000044887)	ENSRBIG00000037470	CHRNG (ENSRBIG00000035390)	CHRND (ENSRBIG00000040799)	PRSS56 (ENSRBIG00000041026)	ECEL1 (ENSRBIG00000043419)	ALPI (ENSRBIG00000040260)	DIS3L2 (ENSRBIG00000033993)	ENSRBIG00000038058	ENSRBIG00000032930
Platyrrhini	ANCESTRAL SPECIES	19	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.a.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537.u #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Mas night monkey	MODERN SPECIES	875																RNF216 (ENSANAG00000023195) #22	FSCN1 (ENSANAG00000031214) #23	ACTB (ENSANAG00000024575) #24	FBXL18 (ENSANAG00000028997) #25	TNRC18 (ENSANAG00000021109) #26	SLC29A4 (ENSANAG00000032824) #27	ENSANAG00000030505 #28	MMD2 (ENSANAG00000025553) #29	RADIL (ENSANAG00000033379) #30	PAPOLB (ENSANAG00000033074) #31	AP5Z1 (ENSANAG00000031607) #32	FOXK1 (ENSANAG00000019885) #33	ENSANAG00000036328	SDK1 (ENSANAG00000022235) #34	ENSANAG00000015540	CARD11 (ENSANAG00000032674) #35
Cebidae	ANCESTRAL SPECIES	24	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.a.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537.u #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00940000164307 #31	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	11	GNA12 (ENSCJAG00000018741) #36	CARD11 (ENSCJAG00000018725) #35	SDK1 (ENSCJAG00000018706) #34	FOXK1 (ENSCJAG00000018682) #33	AP5Z1 (ENSCJAG00000018675) #32	ENSCJAG00000056616 #31	RADIL (ENSCJAG00000018360) #30	MMD2 (ENSCJAG00000046225) #29	WIPI2 (ENSCJAG00000018164) #28	SLC29A4 (ENSCJAG00000000017) #27	TNRC18 (ENSCJAG00000000014) #26	FBXL18 (ENSCJAG00000000010) #25	ENSCJAG00000074750 #24	FSCN1 (ENSCJAG00000009271) #23	RNF216 (ENSCJAG00000000082) #22	ENSCJAG00000087020 #22	RBAK (ENSCJAG00000021500) #19	ZNF12 (ENSCJAG00000015557) #17	ZNF316 (ENSCJAG00000046914) #15	INTS15 (ENSCJAG00000015531) #13	ZDHHC4 (ENSCJAG00000015517) #11	GRID2IP (ENSCJAG00000015493) #10	KDELR2 (ENSCJAG00000015474) #9	DAGLB (ENSCJAG00000015461) #8	RAC1 (ENSCJAG00000015455) #7	ENSCJAG00000084892	CYTH3 (ENSCJAG00000046741)	USP42 (ENSCJAG00000015403)	ANKRD61 (ENSCJAG00000015402)	EIF2AK1 (ENSCJAG00000015372)	AIMP2 (ENSCJAG00000015370)
Marmoset	MODERN SPECIES	11	EIF2AK1 (ENSCJAG00000015372)	ANKRD61 (ENSCJAG00000015402)	USP42 (ENSCJAG00000015403)	CYTH3 (ENSCJAG00000046741)	ENSCJAG00000084892	RAC1 (ENSCJAG00000015455) #7	DAGLB (ENSCJAG00000015461) #8	KDELR2 (ENSCJAG00000015474) #9	GRID2IP (ENSCJAG00000015493) #10	ZDHHC4 (ENSCJAG00000015517) #11	INTS15 (ENSCJAG00000015531) #13	ZNF316 (ENSCJAG00000046914) #15	ZNF12 (ENSCJAG00000015557) #17	RBAK (ENSCJAG00000021500) #19	ENSCJAG00000087020 #22	RNF216 (ENSCJAG00000000082) #22	FSCN1 (ENSCJAG00000009271) #23	ENSCJAG00000074750 #24	FBXL18 (ENSCJAG00000000010) #25	TNRC18 (ENSCJAG00000000014) #26	SLC29A4 (ENSCJAG00000000017) #27	WIPI2 (ENSCJAG00000018164) #28	MMD2 (ENSCJAG00000046225) #29	RADIL (ENSCJAG00000018360) #30	ENSCJAG00000056616 #31	AP5Z1 (ENSCJAG00000018675) #32	FOXK1 (ENSCJAG00000018682) #33	SDK1 (ENSCJAG00000018706) #34	CARD11 (ENSCJAG00000018725) #35	GNA12 (ENSCJAG00000018741) #36	AMZ1 (ENSCJAG00000018761) #37
Cebidae_a	ANCESTRAL SPECIES	19	ENSGT00940000154596.b	ENSGT00940000155825	ENSGT00390000014547.c	ENSGT00940000153500.a.a.k.b.b #7	ENSGT00940000153500.a.a.k.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000156663.B #14	ENSGT00940000162728 #15	ENSGT00940000154303.B #17	ENSGT00940000154173.A.a.a #18	ENSGT00940000154303.A.b #19	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb.o #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537.u #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36	ENSGT00530000063996.b #37	ENSGT00390000017551
Bolivian squirrel monkey	MODERN SPECIES	104	AIMP2 (ENSSBOG00000024906)	EIF2AK1 (ENSSBOG00000026446)	ANKRD61 (ENSSBOG00000024193)	USP42 (ENSSBOG00000032011)	CYTH3 (ENSSBOG00000026269)	ENSSBOG00000024828 #7	DAGLB (ENSSBOG00000034747) #8	KDELR2 (ENSSBOG00000025326) #9	GRID2IP (ENSSBOG00000029841) #10	ZDHHC4 (ENSSBOG00000036004) #11	INTS15 (ENSSBOG00000034408) #13	ZNF853 (ENSSBOG00000021317) #14	ZNF316 (ENSSBOG00000025746) #15	ZNF12 (ENSSBOG00000033261) #17	RBAK (ENSSBOG00000030800) #19	RNF216 (ENSSBOG00000011526) #22	FSCN1 (ENSSBOG00000025510) #23
Capuchin	MODERN SPECIES	82	ENSCCAG00000030315	ENSCCAG00000002321	RAC1 (ENSCCAG00000018116) #7	DAGLB (ENSCCAG00000026009) #8	KDELR2 (ENSCCAG00000037966) #9	GRID2IP (ENSCCAG00000037972) #10	ZDHHC4 (ENSCCAG00000037975) #11	C7orf26 (ENSCCAG00000015301) #13	ZNF853 (ENSCCAG00000037168) #14	ZNF316 (ENSCCAG00000024464) #15	ZNF12 (ENSCCAG00000012689) #17	ENSCCAG00000020987 #18	ENSCCAG00000033746 #18	RBAK (ENSCCAG00000021483) #19	ENSCCAG00000036334 #18	RNF216 (ENSCCAG00000022796) #22	FSCN1 (ENSCCAG00000035212) #23	ACTB (ENSCCAG00000037169) #24	ENSCCAG00000015022	FBXL18 (ENSCCAG00000025281) #25	TNRC18 (ENSCCAG00000021919) #26	SLC29A4 (ENSCCAG00000024270) #27	ENSCCAG00000020156 #28	MMD2 (ENSCCAG00000031853) #29	RADIL (ENSCCAG00000021240) #30	AP5Z1 (ENSCCAG00000028403) #32	FOXK1 (ENSCCAG00000024340) #33	SDK1 (ENSCCAG00000020198) #34	CARD11 (ENSCCAG00000025115) #35	GNA12 (ENSCCAG00000029418) #36	AMZ1 (ENSCCAG00000037745) #37
Atlantogenata	ANCESTRAL SPECIES	21	ENSGT00940000157605	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00950000184989	ENSGT00940000155825	ENSGT00390000014156	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000162728 #15	ENSGT00940000154303.A #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.b ##24	ENSGT00940000160116	ENSGT00940000159369	ENSGT00520000061927	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00390000015076	ENSGT00390000001758	ENSGT00940000154244.A	ENSGT00940000153560.b.a.a	ENSGT00720000108863	ENSGT00640000091541	ENSGT01060000248591.a.a.b	ENSGT00390000011880
Afrotheria	ANCESTRAL SPECIES	18	ENSGT00940000157605	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00950000184989	ENSGT00940000155825	ENSGT00390000014156	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000162728 #15	ENSGT00940000154303.A #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.b ##24	ENSGT00940000160116	ENSGT00940000159369	ENSGT00520000061927	ENSGT00390000015109 #25	ENSGT00390000015076	ENSGT00390000001758	ENSGT00940000154244.A	ENSGT00940000153560.b.a.a	ENSGT00720000108863	ENSGT00640000091541	ENSGT01060000248591.a.a.b	ENSGT00390000011880	ENSGT00630000089884.C
Afrotheria_a	ANCESTRAL SPECIES	65	ENSGT00940000157605	ENSGT00840000130004	ENSGT00940000154596.b	ENSGT00950000184989	ENSGT00940000155825	ENSGT00390000014156	ENSGT00940000153500.a.a #7	ENSGT00940000156486 #8	ENSGT00390000004010.a.b.a #9	ENSGT00940000157625.b #10	ENSGT00920000149163 #11	ENSGT00390000011370 #13	ENSGT00940000162728 #15	ENSGT00940000154303.A #19	ENSGT01050000244815.B.a.b.b #20	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.l	ENSGT00950000182958.a.b.b.k.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Elephant	MODERN SPECIES	403	ANKRD61 (ENSLAFG00000012703)	EIF2AK1 (ENSLAFG00000012693)	USP42 (ENSLAFG00000013305)	ENSLAFG00000028040	CYTH3 (ENSLAFG00000010832)	ENSLAFG00000003150	RAC1 (ENSLAFG00000012844) #7	ENSLAFG00000004986 #8	KDELR2 (ENSLAFG00000004992) #9	GRID2IP (ENSLAFG00000020636) #10	ZDHHC4 (ENSLAFG00000010790) #11	INTS15 (ENSLAFG00000010793) #13	ZNF316 (ENSLAFG00000016201) #15	RBAK (ENSLAFG00000008833) #19	ENSLAFG00000030133 #20	RNF216 (ENSLAFG00000017088) #22	FSCN1 (ENSLAFG00000031431) #23	ENSLAFG00000001268 ##24	FBXL18 (ENSLAFG00000001983) #25	ENSLAFG00000004819 #26	SLC29A4 (ENSLAFG00000014371) #27	WIPI2 (ENSLAFG00000001086) #28	MMD2 (ENSLAFG00000006633) #29	RADIL (ENSLAFG00000006627) #30	AP5Z1 (ENSLAFG00000026556) #32	FOXK1 (ENSLAFG00000003036) #33	ENSLAFG00000025597	ENSLAFG00000032479	ENSLAFG00000029731	ENSLAFG00000028866	ENSLAFG00000026973
Hyrax	MODERN SPECIES	6753																RNF216 (ENSPCAG00000014558) #22	FSCN1 (ENSPCAG00000014541) #23
Tenrec	MODERN SPECIES	523																RNF216 (ENSETEG00000016305) #22
Xenarthra	ANCESTRAL SPECIES	2010															ENSGT00950000182890.A.a.b.b	ENSGT00510000048032 #22
Armadillo	MODERN SPECIES	1230															ENSDNOG00000046331	RNF216 (ENSDNOG00000004843) #22
Sloth	MODERN SPECIES	534																RNF216 (ENSCHOG00000013207) #22
Marsupialia	ANCESTRAL SPECIES	6	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986.a	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a.m	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00940000156819.a.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Opossum	MODERN SPECIES	5	DHRS7B (ENSMODG00000001421)	TMEM11 (ENSMODG00000001408)	MAP2K3 (ENSMODG00000042585)	ENSMODG00000001377	ENSMODG00000025496	CPSF4 (ENSMODG00000001367)	PTCD1 (ENSMODG00000001350)	PDAP1 (ENSMODG00000001324)	ARPC1B (ENSMODG00000001316)	ENSMODG00000001303	ENSMODG00000001273	KPNA7 (ENSMODG00000001093)	SMURF1 (ENSMODG00000001079)	ENSMODG00000001061	ENSMODG00000048718	ENSMODG00000001052 #22	FSCN1 (ENSMODG00000001028) #23	ACTB (ENSMODG00000002647) #24	FBXL18 (ENSMODG00000000999) #25	TNRC18 (ENSMODG00000000994) #26	SLC29A4 (ENSMODG00000000979) #27	ENSMODG00000000956 #28	MMD2 (ENSMODG00000000933) #29	RADIL (ENSMODG00000000926) #30	AP5Z1 (ENSMODG00000000891) #32	FOXK1 (ENSMODG00000000866) #33	ENSMODG00000024956	ENSMODG00000046744	ENSMODG00000044972	ENSMODG00000047860	ENSMODG00000000829
Marsupialia_b	ANCESTRAL SPECIES	18	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986.a	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300.q	ENSGT00390000014300.r	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a.m	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT00940000156819.a.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Diprotodontia	ANCESTRAL SPECIES	14	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986.a	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300.q	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a.m	ENSGT00950000183183.b.a.n	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT00940000156819.a.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b.rb #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.h.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Common wonbat	MODERN SPECIES	1043	DHRS7B (ENSVURG00010018024)	TMEM11 (ENSVURG00010018029)	ENSVURG00010018034	MAP2K3 (ENSVURG00010018041)	ENSVURG00010018055	ENSVURG00010018064	ENSVURG00010018069	PTCD1 (ENSVURG00010018118)	BUD31 (ENSVURG00010018125)	PDAP1 (ENSVURG00010018142)	ARPC1B (ENSVURG00010018155)	ARPC1A (ENSVURG00010018169)	ENSVURG00010018191	SMURF1 (ENSVURG00010018224)	ENSVURG00010018242	RNF216 (ENSVURG00010018252) #22	FSCN1 (ENSVURG00010018267) #23	ACTB (ENSVURG00010018277) #24	FBXL18 (ENSVURG00010018291) #25	TNRC18 (ENSVURG00010018350) #26	SLC29A4 (ENSVURG00010018431) #27	WIPI2 (ENSVURG00010018474) #28	MMD2 (ENSVURG00010018492) #29	RADIL (ENSVURG00010018523) #30	AP5Z1 (ENSVURG00010018537) #32	FOXK1 (ENSVURG00010018549) #33	ENSVURG00010018557	ENSVURG00010018562	ENSVURG00010018565	ENSVURG00010018571	ENSVURG00010018585
Wallaby	MODERN SPECIES	1437																RNF216 (ENSMEUG00000015606) #22
Tasmanian devil	MODERN SPECIES		ENSSHAG00000025678	TMEM11 (ENSSHAG00000001753)	NATD1 (ENSSHAG00000027545)	MAP2K3 (ENSSHAG00000014370)	ENSSHAG00000021332	ENSSHAG00000024488	CPSF4 (ENSSHAG00000011533)	PTCD1 (ENSSHAG00000011376)	BUD31 (ENSSHAG00000011349)	PDAP1 (ENSSHAG00000028752)	ARPC1B (ENSSHAG00000030346)	ENSSHAG00000010673	ENSSHAG00000009967	ENSSHAG00000008364	ENSSHAG00000027219	ENSSHAG00000005785 #22	FSCN1 (ENSSHAG00000003565) #23	ACTB (ENSSHAG00000029431) #24	FBXL18 (ENSSHAG00000012245) #25	TNRC18 (ENSSHAG00000009526) #26	ENSSHAG00000010855	SLC29A4 (ENSSHAG00000008906) #27	ENSSHAG00000028539	WIPI2 (ENSSHAG00000007266) #28	MMD2 (ENSSHAG00000028375) #29	RADIL (ENSSHAG00000004658) #30	AP5Z1 (ENSSHAG00000004111) #32	ENSSHAG00000022233 #33	ENSSHAG00000008242	ENSSHAG00000021530	ENSSHAG00000028448
Platypus	MODERN SPECIES	11	TMEM11 (ENSOANG00000007734)	NATD1 (ENSOANG00000007733)	MAP2K3 (ENSOANG00000007732)	ENSOANG00000007731	ATP5MF (ENSOANG00000007730)	CPSF4 (ENSOANG00000007729)	ENSOANG00000007728	BUD31 (ENSOANG00000007727)	PDAP1 (ENSOANG00000007726)	ARPC1B (ENSOANG00000007725)	ARPC1A (ENSOANG00000007724)	ENSOANG00000007722	KPNA7 (ENSOANG00000007721)	SMURF1 (ENSOANG00000007719)	ENSOANG00000007718	RNF216 (ENSOANG00000007717) #22	FSCN1 (ENSOANG00000030243) #23	ACTB (ENSOANG00000007716) #24	FBXL18 (ENSOANG00000006566) #25	TNRC18 (ENSOANG00000006567) #26	SLC29A4 (ENSOANG00000006568) #27	WIPI2 (ENSOANG00000006569) #28	MMD2 (ENSOANG00000020170) #29	RADIL (ENSOANG00000003311) #30	AP5Z1 (ENSOANG00000003308) #32	FOXK1 (ENSOANG00000003307) #33	ENSOANG00000003306	ENSOANG00000003300	ENSOANG00000007309	ENSOANG00000010538	SDK1 (ENSOANG00000004329) #34
Sauria	ANCESTRAL SPECIES	12	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.b.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35
Archosauria	ANCESTRAL SPECIES	8	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Neognathae	ANCESTRAL SPECIES	10	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Neognathae_b	ANCESTRAL SPECIES	12	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Passeriformes_d	ANCESTRAL SPECIES	11	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300.o	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Passeriformes_g	ANCESTRAL SPECIES	12	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300.o	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Passeroidea	ANCESTRAL SPECIES	11	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00390000001055	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300.o	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Common canary	MODERN SPECIES	17	USP22 (ENSSCAG00000008918)	DHRS7B (ENSSCAG00000008923)	TMEM11 (ENSSCAG00000008929)	NATD1 (ENSSCAG00000008931)	MAP2K3 (ENSSCAG00000008937)	ENSSCAG00000008942	ENSSCAG00000008947	CPSF4 (ENSSCAG00000008956)	PTCD1 (ENSSCAG00000008968)	ENSSCAG00000008991	PDAP1 (ENSSCAG00000008999)	ARPC1B (ENSSCAG00000009006)	ARPC1A (ENSSCAG00000009009)	KPNA7 (ENSSCAG00000009027)	SMURF1 (ENSSCAG00000009043)	RNF216 (ENSSCAG00000009048) #22	FSCN1 (ENSSCAG00000009055) #23	ACTB (ENSSCAG00000009060) #24	FBXL18 (ENSSCAG00000009067) #25	ENSSCAG00000009080 #26	SLC29A4 (ENSSCAG00000009090) #27	WIPI2 (ENSSCAG00000009100) #28	MMD2 (ENSSCAG00000009114) #29	RADIL (ENSSCAG00000009121) #30	AP5Z1 (ENSSCAG00000009139) #32	FOXK1 (ENSSCAG00000009164) #33	ENSSCAG00000009176	ENSSCAG00000009185	ENSSCAG00000009196	SDK1 (ENSSCAG00000009227) #34	CARD11 (ENSSCAG00000009264) #35
Zebra finch	MODERN SPECIES	5	MPRIP (ENSTGUG00000007423)	TNFRSF13B (ENSTGUG00000007454)	USP22 (ENSTGUG00000007455)	DHRS7B (ENSTGUG00000007489)	TMEM11 (ENSTGUG00000007500)	MAP2K3 (ENSTGUG00000007502)	ENSTGUG00000029126	ATP5MF (ENSTGUG00000027774)	CPSF4 (ENSTGUG00000007552)	PTCD1 (ENSTGUG00000007563)	BUD31 (ENSTGUG00000007584)	PDAP1 (ENSTGUG00000007588)	ARPC1B (ENSTGUG00000007594)	KPNA7 (ENSTGUG00000007626)	SMURF1 (ENSTGUG00000007637)	RNF216 (ENSTGUG00000007658) #22	FSCN1 (ENSTGUG00000007668) #23	ACTB (ENSTGUG00000004138) #24	FBXL18 (ENSTGUG00000007676) #25	TNRC18 (ENSTGUG00000007679) #26	SLC29A4 (ENSTGUG00000007691) #27	WIPI2 (ENSTGUG00000007704) #28	MMD2 (ENSTGUG00000029335) #29	RADIL (ENSTGUG00000007743) #30	AP5Z1 (ENSTGUG00000007760) #32	FOXK1 (ENSTGUG00000007783) #33	ENSTGUG00000007790	ENSTGUG00000007903	SDK1 (ENSTGUG00000007946) #34	CARD11 (ENSTGUG00000008023) #35	GNA12 (ENSTGUG00000026601) #36
Medium ground finch	MODERN SPECIES	22			TMEM11 (ENSGFOG00000008494)	NATD1 (ENSGFOG00000008499)	MAP2K3 (ENSGFOG00000008502)	ENSGFOG00000008509	ENSGFOG00000008510	CPSF4 (ENSGFOG00000008516)	PTCD1 (ENSGFOG00000008525)	ENSGFOG00000008538	PDAP1 (ENSGFOG00000008542)	ARPC1A (ENSGFOG00000008549)	ARPC1B (ENSGFOG00000008561)	KPNA7 (ENSGFOG00000008572)	SMURF1 (ENSGFOG00000008634)	RNF216 (ENSGFOG00000009308) #22	FSCN1 (ENSGFOG00000009318) #23	ENSGFOG00000009329 #24	FBXL18 (ENSGFOG00000009340) #25	SLC29A4 (ENSGFOG00000009402) #27	WIPI2 (ENSGFOG00000009409) #28	MMD2 (ENSGFOG00000009429) #29	RADIL (ENSGFOG00000009439) #30	AP5Z1 (ENSGFOG00000009472) #32	FOXK1 (ENSGFOG00000009540) #33	ENSGFOG00000009559	ENSGFOG00000009594	SDK1 (ENSGFOG00000009659) #34	CARD11 (ENSGFOG00000010356) #35	GNA12 (ENSGFOG00000010526) #36	AMZ1 (ENSGFOG00000010529) #37
Flycatcher	MODERN SPECIES	5	USP22 (ENSFALG00000013792)	DHRS7B (ENSFALG00000013793)	TMEM11 (ENSFALG00000014240)	NATD1 (ENSFALG00000023203)	MAP2K3 (ENSFALG00000013796)	KCNJ12 (ENSFALG00000027206)	ATP5MF (ENSFALG00000013801)	CPSF4 (ENSFALG00000024016)	PTCD1 (ENSFALG00000013803)	ENSFALG00000013804	PDAP1 (ENSFALG00000025682)	ARPC1A (ENSFALG00000013815)	KPNA7 (ENSFALG00000013820)	SMURF1 (ENSFALG00000013824)	ENSFALG00000014244	RNF216 (ENSFALG00000013825) #22	FSCN1 (ENSFALG00000013827) #23	ACTB (ENSFALG00000013828) #24	FBXL18 (ENSFALG00000013829) #25	TNRC18 (ENSFALG00000013830) #26	SLC29A4 (ENSFALG00000013831) #27	WIPI2 (ENSFALG00000028204) #28	MMD2 (ENSFALG00000013836) #29	RADIL (ENSFALG00000013838) #30	AP5Z1 (ENSFALG00000013840) #32	FOXK1 (ENSFALG00000013841) #33	ENSFALG00000013844	ENSFALG00000013847	SDK1 (ENSFALG00000013859) #34	CARD11 (ENSFALG00000013871) #35	GNA12 (ENSFALG00000024808) #36
Great tit	MODERN SPECIES	5	DHRS7B (ENSPMJG00000017419)	ENSPMJG00000017417	ENSPMJG00000017416	NATD1 (ENSPMJG00000017415)	MAP2K3 (ENSPMJG00000017414)	ENSPMJG00000017413	ATP5MF (ENSPMJG00000017412)	CPSF4 (ENSPMJG00000017411)	PTCD1 (ENSPMJG00000017410)	BUD31 (ENSPMJG00000017409)	PDAP1 (ENSPMJG00000017408)	ARPC1B (ENSPMJG00000017407)	ARPC1A (ENSPMJG00000017406)	KPNA7 (ENSPMJG00000017404)	SMURF1 (ENSPMJG00000017403)	RNF216 (ENSPMJG00000017402) #22	FSCN1 (ENSPMJG00000017401) #23	ACTB (ENSPMJG00000017400) #24	FBXL18 (ENSPMJG00000017399) #25	TNRC18 (ENSPMJG00000017396) #26	SLC29A4 (ENSPMJG00000017395) #27	WIPI2 (ENSPMJG00000017394) #28	MMD2 (ENSPMJG00000017393) #29	RADIL (ENSPMJG00000017392) #30	AP5Z1 (ENSPMJG00000017391) #32	FOXK1 (ENSPMJG00000017390) #33	ENSPMJG00000017389	ENSPMJG00000017388	ENSPMJG00000017387	SDK1 (ENSPMJG00000017386) #34	CARD11 (ENSPMJG00000017383) #35
Neognathae_c	ANCESTRAL SPECIES	14	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Kakapo	MODERN SPECIES	21	DHRS7B (ENSSHBG00005009791)	TMEM11 (ENSSHBG00005009779)	NATD1 (ENSSHBG00005009769)	MAP2K3 (ENSSHBG00005009760)	ENSSHBG00005009753	ATP5MF (ENSSHBG00005009739)	CPSF4 (ENSSHBG00005009724)	PTCD1 (ENSSHBG00005009712)	BUD31 (ENSSHBG00005009702)	PDAP1 (ENSSHBG00005009661)	ARPC1B (ENSSHBG00005009647)	ARPC1A (ENSSHBG00005009628)	KPNA7 (ENSSHBG00005009584)	SMURF1 (ENSSHBG00005009565)	ENSSHBG00005009548	RNF216 (ENSSHBG00005009526) #22	FSCN1 (ENSSHBG00005009511) #23	ACTB (ENSSHBG00005009495) #24	FBXL18 (ENSSHBG00005009478) #25	TNRC18 (ENSSHBG00005009360) #26	SLC29A4 (ENSSHBG00005009331) #27	WIPI2 (ENSSHBG00005009312) #28	MMD2 (ENSSHBG00005009293) #29	RADIL (ENSSHBG00005009272) #30	AP5Z1 (ENSSHBG00005009252) #32	FOXK1 (ENSSHBG00005009241) #33	ENSSHBG00005009224	ENSSHBG00005008963	SDK1 (ENSSHBG00005005406) #34	CARD11 (ENSSHBG00005005085) #35	GNA12 (ENSSHBG00005005070) #36
Golden eagle	MODERN SPECIES	17	DHRS7B (ENSACCG00020012388)	TMEM11 (ENSACCG00020012496)	NATD1 (ENSACCG00020012513)	MAP2K3 (ENSACCG00020012553)	ENSACCG00020012599	ATP5MF (ENSACCG00020012613)	CPSF4 (ENSACCG00020012629)	PTCD1 (ENSACCG00020012652)	BUD31 (ENSACCG00020012680)	PDAP1 (ENSACCG00020012701)	ARPC1B (ENSACCG00020012730)	ARPC1A (ENSACCG00020012791)	KPNA7 (ENSACCG00020012868)	SMURF1 (ENSACCG00020012938)	ENSACCG00020012955	RNF216 (ENSACCG00020012969) #22	FSCN1 (ENSACCG00020012998) #23	ACTB (ENSACCG00020013020) #24	FBXL18 (ENSACCG00020013037) #25	TNRC18 (ENSACCG00020013096) #26	SLC29A4 (ENSACCG00020013147) #27	WIPI2 (ENSACCG00020013177) #28	MMD2 (ENSACCG00020013196) #29	RADIL (ENSACCG00020013236) #30	AP5Z1 (ENSACCG00020013298) #32	FOXK1 (ENSACCG00020013339) #33	ENSACCG00020013358	ENSACCG00020013389	SDK1 (ENSACCG00020013688) #34	CARD11 (ENSACCG00020013852) #35	GNA12 (ENSACCG00020013942) #36
Galloanserae	ANCESTRAL SPECIES	9	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Anatidae	ANCESTRAL SPECIES	7	ENSGT00940000156623	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293.c #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Pink-footed goose	MODERN SPECIES	59	USP22 (ENSABRG00000001162)	DHRS7B (ENSABRG00000001258)	TMEM11 (ENSABRG00000001303)	NATD1 (ENSABRG00000001319)	MAP2K3 (ENSABRG00000001410)	ENSABRG00000001514	ATP5MF (ENSABRG00000001534)	CPSF4 (ENSABRG00000001549)	PTCD1 (ENSABRG00000001568)	BUD31 (ENSABRG00000001589)	PDAP1 (ENSABRG00000001687)	ARPC1B (ENSABRG00000001702)	ARPC1A (ENSABRG00000001764)	KPNA7 (ENSABRG00000001828)	SMURF1 (ENSABRG00000001864)	RNF216 (ENSABRG00000001919) #22	ENSABRG00000001980 #23	ACTB (ENSABRG00000002004) #24	FBXL18 (ENSABRG00000002032) #25	TNRC18 (ENSABRG00000002069) #26	SLC29A4 (ENSABRG00000002112) #27	WIPI2 (ENSABRG00000002125) #28	MMD2 (ENSABRG00000002148) #29	RADIL (ENSABRG00000002193) #30	AP5Z1 (ENSABRG00000002241) #32	FOXK1 (ENSABRG00000002286) #33	ENSABRG00000002324	ENSABRG00000002537	SDK1 (ENSABRG00000002854) #34	CARD11 (ENSABRG00000005792) #35	GNA12 (ENSABRG00000005898) #36
Duck	MODERN SPECIES	6	USP22 (ENSAPLG00000002524)	DHRS7B (ENSAPLG00000007599)	TMEM11 (ENSAPLG00000028416)	NATD1 (ENSAPLG00000007590)	ENSAPLG00000026453	ENSAPLG00000027874	ATP5MF (ENSAPLG00000007021)	CPSF4 (ENSAPLG00000018571)	PTCD1 (ENSAPLG00000006862)	BUD31 (ENSAPLG00000006748)	PDAP1 (ENSAPLG00000006542)	ARPC1B (ENSAPLG00000020035)	ARPC1A (ENSAPLG00000011059)	KPNA7 (ENSAPLG00000010767)	SMURF1 (ENSAPLG00000010476)	RNF216 (ENSAPLG00000010364) #22	ACTB (ENSAPLG00000010147) #24	FBXL18 (ENSAPLG00000010121) #25	TNRC18 (ENSAPLG00000028315) #26	SLC29A4 (ENSAPLG00000010012) #27	WIPI2 (ENSAPLG00000009715) #28	ENSAPLG00000026450 #30	AP5Z1 (ENSAPLG00000009165) #32	FOXK1 (ENSAPLG00000009084) #33	ENSAPLG00000007447	ENSAPLG00000005773	SDK1 (ENSAPLG00000004608) #34	CARD11 (ENSAPLG00000003700) #35	GNA12 (ENSAPLG00000003620) #36	BRAT1 (ENSAPLG00000003300)	ENSAPLG00000003199
Phasianidae	DUPLICATION
Phasianidae	ANCESTRAL SPECIES	10	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032.a #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Phasianidae_b	ANCESTRAL SPECIES	10	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032.a #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35	ENSGT00940000157636 #36
Chicken	MODERN SPECIES	5	DHRS7B (ENSGALG00010021629)	TMEM11 (ENSGALG00010021610)	NATD1 (ENSGALG00010021573)	MAP2K3 (ENSGALG00010021550)	KCNJ12 (ENSGALG00010021526)	ATP5J2 (ENSGALG00010021454)	CPSF4 (ENSGALG00010021431)	PTCD1 (ENSGALG00010021424)	BUD31 (ENSGALG00010021414)	PDAP1 (ENSGALG00010021401)	ARPC1B (ENSGALG00010021362)	ARPC1A (ENSGALG00010021325)	KPNA7 (ENSGALG00010021313)	SMURF1 (ENSGALG00010021301)	ENSGALG00010021271	RNF216 (ENSGALG00010021251) #22	FSCN1 (ENSGALG00010021237) #23	ACTB (ENSGALG00010021232) #24	FBXL18 (ENSGALG00010021214) #25	TNRC18 (ENSGALG00010021188) #26	SLC29A4 (ENSGALG00010021172) #27	WIPI2 (ENSGALG00010021162) #28	MMD2 (ENSGALG00010021159) #29	RADIL (ENSGALG00010021155) #30	AP5Z1 (ENSGALG00010021146) #32	FOXK1 (ENSGALG00010021144) #33	CYP3A5 (ENSGALG00010017603)	CYP3A4 (ENSGALG00010017848)	ENSGALG00010022582	SDK1 (ENSGALG00010021098) #34	CARD11 (ENSGALG00010017184) #35
Turkey	MODERN SPECIES	7	ENSMGAG00000003313	CYP3A37 (ENSMGAG00000003542)	FOXK1 (ENSMGAG00000003278) #33	ENSMGAG00000003799 #30	ENSMGAG00000003768 #32	MMD2 (ENSMGAG00000003819) #29	ENSMGAG00000003831 #28	ENSMGAG00000003866 #27	ENSMGAG00000003892 #26	ENSMGAG00000021420	ENSMGAG00000003918 #25	ENSMGAG00000003960 #24	ENSMGAG00000018626 #23	ENSMGAG00000003905 #23	ENSMGAG00000016921 #22	ENSMGAG00000003930 #22	ENSMGAG00000003983	ENSMGAG00000003976	ENSMGAG00000021321	KPNA7 (ENSMGAG00000004051)	PDAP1 (ENSMGAG00000004176)	ENSMGAG00000004152	ENSMGAG00000004113	ENSMGAG00000004211	BUD31 (ENSMGAG00000004195)	ENSMGAG00000018852	CPSF4 (ENSMGAG00000004235)	ENSMGAG00000015541	ENSMGAG00000004264	NATD1 (ENSMGAG00000004258)	ENSMGAG00000004263
Japanese quail	MODERN SPECIES	5	TMEM11 (ENSCJPG00005001383)	NATD1 (ENSCJPG00005001379)	MAP2K3 (ENSCJPG00005001368)	ENSCJPG00005001360	ATP5MF (ENSCJPG00005001357)	CPSF4 (ENSCJPG00005001353)	PTCD1 (ENSCJPG00005001347)	BUD31 (ENSCJPG00005001343)	PDAP1 (ENSCJPG00005001340)	ARPC1B (ENSCJPG00005001338)	ARPC1A (ENSCJPG00005001335)	KPNA7 (ENSCJPG00005001331)	ENSCJPG00005001328	SMURF1 (ENSCJPG00005001326)	ENSCJPG00005001323	RNF216 (ENSCJPG00005000414) #22	FSCN1 (ENSCJPG00005000395) #23	ACTB (ENSCJPG00005000336) ##24	FBXL18 (ENSCJPG00005000327) #25	TNRC18 (ENSCJPG00005000297) #26	SLC29A4 (ENSCJPG00005000281) #27	WIPI2 (ENSCJPG00005000267) #28	MMD2 (ENSCJPG00005000255) #29	RADIL (ENSCJPG00005000245) #30	AP5Z1 (ENSCJPG00005000241) #32	FOXK1 (ENSCJPG00005000229) #33	ENSCJPG00005000081	ENSCJPG00005000052	SDK1 (ENSCJPG00005014282) #34	CARD11 (ENSCJPG00005014281) #35	GNA12 (ENSCJPG00005014279) #36
Phasianidae	ANCESTRAL SPECIES																	ENSGT00510000048032.b #22
Phasianidae_b	ANCESTRAL SPECIES																	ENSGT00510000048032.b #22
Turkey	MODERN SPECIES	7	ENSMGAG00000019406	ENSMGAG00000003313	CYP3A37 (ENSMGAG00000003542)	FOXK1 (ENSMGAG00000003278) #33	ENSMGAG00000003799 #30	ENSMGAG00000003768 #32	MMD2 (ENSMGAG00000003819) #29	ENSMGAG00000003831 #28	ENSMGAG00000003866 #27	ENSMGAG00000003892 #26	ENSMGAG00000021420	ENSMGAG00000003918 #25	ENSMGAG00000003960 #24	ENSMGAG00000018626 #23	ENSMGAG00000003905 #23	ENSMGAG00000016921 #22	ENSMGAG00000003930 #22	ENSMGAG00000003983	ENSMGAG00000003976	ENSMGAG00000021321	KPNA7 (ENSMGAG00000004051)	PDAP1 (ENSMGAG00000004176)	ENSMGAG00000004152	ENSMGAG00000004113	ENSMGAG00000004211	BUD31 (ENSMGAG00000004195)	ENSMGAG00000018852	CPSF4 (ENSMGAG00000004235)	ENSMGAG00000015541	ENSMGAG00000004264	NATD1 (ENSMGAG00000004258)
African ostrich	MODERN SPECIES	989	DHRS7B (ENSSCUG00000018313)	TMEM11 (ENSSCUG00000018314)	NATD1 (ENSSCUG00000018315)	MAP2K3 (ENSSCUG00000018318)	ENSSCUG00000018322	ATP5MF (ENSSCUG00000018324)	CPSF4 (ENSSCUG00000018325)	PTCD1 (ENSSCUG00000018329)	BUD31 (ENSSCUG00000018334)	PDAP1 (ENSSCUG00000018335)	ARPC1A (ENSSCUG00000018336)	ENSSCUG00000018338	KPNA7 (ENSSCUG00000018339)	SMURF1 (ENSSCUG00000018341)	ENSSCUG00000018342	RNF216 (ENSSCUG00000018343) #22
Australian saltwater crocodile	MODERN SPECIES	46	TMEM11 (ENSCPRG00005016040)	NATD1 (ENSCPRG00005016042)	MAP2K3 (ENSCPRG00005016043)	ENSCPRG00005016049	ATP5MF (ENSCPRG00005016051)	CPSF4 (ENSCPRG00005016053)	PTCD1 (ENSCPRG00005016054)	BUD31 (ENSCPRG00005016057)	PDAP1 (ENSCPRG00005016062)	ARPC1B (ENSCPRG00005016064)	ARPC1A (ENSCPRG00005016070)	ENSCPRG00005016109	KPNA7 (ENSCPRG00005016120)	SMURF1 (ENSCPRG00005016127)	ENSCPRG00005016185	RNF216 (ENSCPRG00005016190) #22	FSCN1 (ENSCPRG00005016199) #23	ACTB (ENSCPRG00005016203) #24	FBXL18 (ENSCPRG00005016208) #25	SLC29A4 (ENSCPRG00005016263) #27	WIPI2 (ENSCPRG00005016270) #28	MMD2 (ENSCPRG00005016281) #29	RADIL (ENSCPRG00005016285) #30	AP5Z1 (ENSCPRG00005016292) #32	FOXK1 (ENSCPRG00005016315) #33	ENSCPRG00005016322	ENSCPRG00005016326	SDK1 (ENSCPRG00005016331) #34	CARD11 (ENSCPRG00005016359) #35	GNA12 (ENSCPRG00005016367) #36	AMZ1 (ENSCPRG00005016372) #37
Emydidae	ANCESTRAL SPECIES	12	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00510000046986	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.b.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35
Three-toed box turtle	MODERN SPECIES	37	TMEM11 (ENSTMTG00000018651)	NATD1 (ENSTMTG00000018661)	MAP2K3 (ENSTMTG00000018672)	ENSTMTG00000018727	ATP5MF (ENSTMTG00000018744)	CPSF4 (ENSTMTG00000013163)	PTCD1 (ENSTMTG00000013170)	BUD31 (ENSTMTG00000013181)	PDAP1 (ENSTMTG00000013184)	ARPC1B (ENSTMTG00000013193)	ARPC1A (ENSTMTG00000013201)	ENSTMTG00000013213	KPNA7 (ENSTMTG00000013331)	SMURF1 (ENSTMTG00000013503)	ENSTMTG00000013912	RNF216 (ENSTMTG00000013919) #22	FSCN1 (ENSTMTG00000013932) #23	ACTB (ENSTMTG00000013939) #24	FBXL18 (ENSTMTG00000013950) #25	TNRC18 (ENSTMTG00000013974) #26	SLC29A4 (ENSTMTG00000014089) #27	WIPI2 (ENSTMTG00000014221) #28	MMD2 (ENSTMTG00000014249) #29	RADIL (ENSTMTG00000014332) #30	AP5Z1 (ENSTMTG00000014674) #32	FOXK1 (ENSTMTG00000014689) #33	ENSTMTG00000014716	ENSTMTG00000014788	SDK1 (ENSTMTG00000014861) #34	CARD11 (ENSTMTG00000015497) #35	GNA12 (ENSTMTG00000015674) #36
painted turtle	MODERN SPECIES	2421	DHRS7B (ENSCPBG00000020886)	TMEM11 (ENSCPBG00000020885)	NATD1 (ENSCPBG00000020883)	MAP2K3 (ENSCPBG00000020879)	ATP5MF (ENSCPBG00000020871)	CPSF4 (ENSCPBG00000020869)	PTCD1 (ENSCPBG00000020866)	BUD31 (ENSCPBG00000020864)	PDAP1 (ENSCPBG00000020862)	ARPC1B (ENSCPBG00000020858)	ARPC1A (ENSCPBG00000020854)	ENSCPBG00000020844	KPNA7 (ENSCPBG00000020833)	SMURF1 (ENSCPBG00000020821)	ENSCPBG00000020819	RNF216 (ENSCPBG00000020812) #22	FSCN1 (ENSCPBG00000020810) #23	ACTB (ENSCPBG00000020809) #24	FBXL18 (ENSCPBG00000020806) #25	TNRC18 (ENSCPBG00000020786) #26	SLC29A4 (ENSCPBG00000020775) #27	WIPI2 (ENSCPBG00000020771) #28	MMD2 (ENSCPBG00000020769) #29	RADIL (ENSCPBG00000020765) #30	AP5Z1 (ENSCPBG00000020762) #32	FOXK1 (ENSCPBG00000020759) #33	ENSCPBG00000020756	ENSCPBG00000020752	ENSCPBG00000020745	SDK1 (ENSCPBG00000020738) #34	CARD11 (ENSCPBG00000020734) #35
Testudinidae	ANCESTRAL SPECIES	13	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.b.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35
Goode s thornscrub tortoise	MODERN SPECIES	1	TMEM11 (ENSGEVG00005008733)	NATD1 (ENSGEVG00005008718)	MAP2K3 (ENSGEVG00005008697)	ENSGEVG00005008686	ENSGEVG00005008673	CPSF4 (ENSGEVG00005008657)	PTCD1 (ENSGEVG00005008641)	BUD31 (ENSGEVG00005008621)	PDAP1 (ENSGEVG00005008608)	ARPC1B (ENSGEVG00005008587)	ARPC1A (ENSGEVG00005008567)	ENSGEVG00005008415	KPNA7 (ENSGEVG00005008225)	SMURF1 (ENSGEVG00005008131)	ENSGEVG00005008108	RNF216 (ENSGEVG00005008033) #22	FSCN1 (ENSGEVG00005007997) #23	ACTB (ENSGEVG00005007981) #24	FBXL18 (ENSGEVG00005007947) #25	TNRC18 (ENSGEVG00005007897) #26	SLC29A4 (ENSGEVG00005007844) #27	WIPI2 (ENSGEVG00005007807) #28	MMD2 (ENSGEVG00005007758) #29	RADIL (ENSGEVG00005007727) #30	AP5Z1 (ENSGEVG00005007693) #32	FOXK1 (ENSGEVG00005007667) #33	ENSGEVG00005006677	ENSGEVG00005005895	ENSGEVG00005005359	SDK1 (ENSGEVG00005004810) #34	CARD11 (ENSGEVG00005004474) #35
Abingdon island giant tortoise	MODERN SPECIES	2604														SMURF1 (ENSCABG00000006174)	ENSCABG00000006171	RNF216 (ENSCABG00000005893) #22	FSCN1 (ENSCABG00000005872) #23	ACTB (ENSCABG00000005869) #24	FBXL18 (ENSCABG00000005867) #25	SLC29A4 (ENSCABG00000005806) #27	WIPI2 (ENSCABG00000005798) #28	MMD2 (ENSCABG00000005794) #29	RADIL (ENSCABG00000005792) #30	AP5Z1 (ENSCABG00000005718) #32	FOXK1 (ENSCABG00000005714) #33	ENSCABG00000005664	ENSCABG00000005553	ENSCABG00000004969	SDK1 (ENSCABG00000004895) #34	CARD11 (ENSCABG00000004867) #35
Chinese turtle	MODERN SPECIES	264					MAP2K3 (ENSPSIG00000011264)	ENSPSIG00000001742	ATP5MF (ENSPSIG00000011253)	CPSF4 (ENSPSIG00000011229)	PTCD1 (ENSPSIG00000011184)	BUD31 (ENSPSIG00000011153)	PDAP1 (ENSPSIG00000011087)	ARPC1A (ENSPSIG00000011034)	ENSPSIG00000010963	SMURF1 (ENSPSIG00000010953)	ENSPSIG00000001738	RNF216 (ENSPSIG00000010937) #22	FSCN1 (ENSPSIG00000010881) #23	ACTB (ENSPSIG00000010875) #24	FBXL18 (ENSPSIG00000010848) #25	TNRC18 (ENSPSIG00000010641) #26	SLC29A4 (ENSPSIG00000010626) #27	WIPI2 (ENSPSIG00000010520) #28	MMD2 (ENSPSIG00000010464) #29	RADIL (ENSPSIG00000010253) #30	AP5Z1 (ENSPSIG00000010154) #32	FOXK1 (ENSPSIG00000010095) #33	ENSPSIG00000009282	ENSPSIG00000008012	SDK1 (ENSPSIG00000007622) #34	CARD11 (ENSPSIG00000007230) #35	GNA12 (ENSPSIG00000007203) #36
Lepidosauria	ANCESTRAL SPECIES	22	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.b.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573 #35
tuatara	MODERN SPECIES	1383	NATD1 (ENSSPUG00000003604)	MAP2K3 (ENSSPUG00000003597)	ENSSPUG00000003583	ENSSPUG00000003555	CPSF4 (ENSSPUG00000003549)	PTCD1 (ENSSPUG00000003540)	BUD31 (ENSSPUG00000003523)	PDAP1 (ENSSPUG00000003518)	ARPC1B (ENSSPUG00000003501)	ARPC1A (ENSSPUG00000003489)	ENSSPUG00000003424	KPNA7 (ENSSPUG00000003169)	SMURF1 (ENSSPUG00000002982)	ENSSPUG00000002956	ENSSPUG00000002931 #22	ENSSPUG00000002901 #22	FSCN1 (ENSSPUG00000002887) #23	ACTB (ENSSPUG00000002859) #24	FBXL18 (ENSSPUG00000002840) #25	TNRC18 (ENSSPUG00000002773) #26	SLC29A4 (ENSSPUG00000002730) #27	WIPI2 (ENSSPUG00000002705) #28	MMD2 (ENSSPUG00000002669) #29	RADIL (ENSSPUG00000002651) #30	AP5Z1 (ENSSPUG00000002637) #32	FOXK1 (ENSSPUG00000002586) #33	CYP3A237 (ENSSPUG00000002560)	CYP3A236 (ENSSPUG00000002482)	CYP3A234 (ENSSPUG00000002466)	SDK1 (ENSSPUG00000002401) #34	ENSSPUG00000002383 #34
tuatara	MODERN SPECIES	1383	TMEM11 (ENSSPUG00000003610)	NATD1 (ENSSPUG00000003604)	MAP2K3 (ENSSPUG00000003597)	ENSSPUG00000003583	ENSSPUG00000003555	CPSF4 (ENSSPUG00000003549)	PTCD1 (ENSSPUG00000003540)	BUD31 (ENSSPUG00000003523)	PDAP1 (ENSSPUG00000003518)	ARPC1B (ENSSPUG00000003501)	ARPC1A (ENSSPUG00000003489)	ENSSPUG00000003424	KPNA7 (ENSSPUG00000003169)	SMURF1 (ENSSPUG00000002982)	ENSSPUG00000002956	ENSSPUG00000002931 #22	ENSSPUG00000002901 #22	FSCN1 (ENSSPUG00000002887) #23	ACTB (ENSSPUG00000002859) #24	FBXL18 (ENSSPUG00000002840) #25	TNRC18 (ENSSPUG00000002773) #26	SLC29A4 (ENSSPUG00000002730) #27	WIPI2 (ENSSPUG00000002705) #28	MMD2 (ENSSPUG00000002669) #29	RADIL (ENSSPUG00000002651) #30	AP5Z1 (ENSSPUG00000002637) #32	FOXK1 (ENSSPUG00000002586) #33	CYP3A237 (ENSSPUG00000002560)	CYP3A236 (ENSSPUG00000002482)	CYP3A234 (ENSSPUG00000002466)	SDK1 (ENSSPUG00000002401) #34
Episquamata	ANCESTRAL SPECIES	8	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.b.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573.a #35
Laterata	ANCESTRAL SPECIES	22	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875	ENSGT01030000234586.A.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00940000156819.a.b	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.b.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34	ENSGT00940000158573.a #35
Common wall lizard	MODERN SPECIES	5	CORO7 (ENSPMRG00000015131)	ENSPMRG00000015107	DNAJA3 (ENSPMRG00000015091)	NMRAL1 (ENSPMRG00000015078)	HMOX2 (ENSPMRG00000015069)	CDIP1 (ENSPMRG00000015063)	ENSPMRG00000015058	MGRN1 (ENSPMRG00000015031)	ENSPMRG00000015017	NUDT16L1 (ENSPMRG00000015005)	NAA60 (ENSPMRG00000014997)	INTS15 (ENSPMRG00000014988) #13	DNASE1 (ENSPMRG00000014979)	SMURF1 (ENSPMRG00000014955)	ENSPMRG00000014944	RNF216 (ENSPMRG00000014937) #22	FSCN1 (ENSPMRG00000014927) #23	ACTB (ENSPMRG00000014896) #24	FBXL18 (ENSPMRG00000014889) #25	TNRC18 (ENSPMRG00000014823) #26	SLC29A4 (ENSPMRG00000014802) #27	WIPI2 (ENSPMRG00000014768) #28	MMD2 (ENSPMRG00000014749) #29	ENSPMRG00000014738 #30	ENSPMRG00000014725 #30	AP5Z1 (ENSPMRG00000014693) #32	ENSPMRG00000014683	ENSPMRG00000014680 #33	ENSPMRG00000014671	ENSPMRG00000019804	ENSPMRG00000019733
Argentine black and white tegu	MODERN SPECIES	103	TMEM11 (ENSSMRG00000020112)	NATD1 (ENSSMRG00000020113)	MAP2K3 (ENSSMRG00000020114)	ENSSMRG00000020115	ENSSMRG00000020116	CPSF4 (ENSSMRG00000020117)	PTCD1 (ENSSMRG00000020118)	BUD31 (ENSSMRG00000020120)	PDAP1 (ENSSMRG00000020122)	ARPC1B (ENSSMRG00000020124)	ARPC1A (ENSSMRG00000020127)	ENSSMRG00000020128	KPNA7 (ENSSMRG00000020136)	SMURF1 (ENSSMRG00000020244)	ENSSMRG00000020246	RNF216 (ENSSMRG00000020248) #22	FSCN1 (ENSSMRG00000020250) #23	ACTB (ENSSMRG00000020253) #24	FBXL18 (ENSSMRG00000020254) #25	TNRC18 (ENSSMRG00000020258) #26	SLC29A4 (ENSSMRG00000020264) #27	WIPI2 (ENSSMRG00000020266) #28	MMD2 (ENSSMRG00000020268) #29	RADIL (ENSSMRG00000020270) #30	AP5Z1 (ENSSMRG00000020271) #32	FOXK1 (ENSSMRG00000020272) #33	ENSSMRG00000020274	ENSSMRG00000020277	ENSSMRG00000020278	SDK1 (ENSSMRG00000020282) #34	CARD11 (ENSSMRG00000020289) #35
Elapidae	ANCESTRAL SPECIES	1	ENSGT00940000158171	ENSGT00390000006617	ENSGT00390000014840.a	ENSGT00940000160875.a	ENSGT01030000234586.A.a.b	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.bb #23	ENSGT00950000183157.a.a.b.cb #23	ENSGT00950000182960.a.a.a.a.b #24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000155537 #28	ENSGT00940000157972 #29	ENSGT00940000159293 #30	ENSGT00390000017592 #32	ENSGT00940000159507 #33	ENSGT00950000182958.a.b.b.b	ENSGT00950000182958.a.b.b.a	ENSGT00950000182958.a.b.a	ENSGT00940000157747 #34
Mainland tiger snake	MODERN SPECIES	241	COX19 (ENSNSUG00000014108)	ENSNSUG00000014109	TNFRSF13B (ENSNSUG00000014110)	USP22 (ENSNSUG00000014111)	DHRS7B (ENSNSUG00000014112)	TMEM11 (ENSNSUG00000014113)	ENSNSUG00000014114	ENSNSUG00000014115	ENSNSUG00000014116	CPSF4 (ENSNSUG00000014117)	ARPC1B (ENSNSUG00000014118)	ARPC1A (ENSNSUG00000014119)	ENSNSUG00000014120	KPNA7 (ENSNSUG00000014121)	SMURF1 (ENSNSUG00000014122)	RNF216 (ENSNSUG00000014123) #22	FSCN1 (ENSNSUG00000014196) #23
Eastern brown snake	MODERN SPECIES	24	USP22 (ENSPTXG00000006622)	DHRS7B (ENSPTXG00000006623)	TMEM11 (ENSPTXG00000006624)	NATD1 (ENSPTXG00000006626)	ENSPTXG00000006628	ENSPTXG00000006631	ENSPTXG00000006632	CPSF4 (ENSPTXG00000006634)	PTCD1 (ENSPTXG00000006635)	BUD31 (ENSPTXG00000006636)	ARPC1B (ENSPTXG00000006637)	ARPC1A (ENSPTXG00000006639)	ENSPTXG00000006641	KPNA7 (ENSPTXG00000006643)	SMURF1 (ENSPTXG00000006645)	ENSPTXG00000006646 #22	ENSPTXG00000006647 #23	ENSPTXG00000006648 #23	ACTB (ENSPTXG00000006649) #24	FBXL18 (ENSPTXG00000006650) #25	ENSPTXG00000006651 #26	ENSPTXG00000006652 #26	SLC29A4 (ENSPTXG00000006654) #27	RADIL (ENSPTXG00000006655) #30	AP5Z1 (ENSPTXG00000006766) #32	FOXK1 (ENSPTXG00000006769) #33	ENSPTXG00000006776	ENSPTXG00000006809	ENSPTXG00000007271	SDK1 (ENSPTXG00000007273) #34	CARD11 (ENSPTXG00000007391) #35
Blue-lipped sea krait	MODERN SPECIES	3007																RNF216 (ENSLLTG00000010099) #22
Indian cobra	MODERN SPECIES	15	USP22 (ENSNNAG00000015976)	DHRS7B (ENSNNAG00000016027)	TMEM11 (ENSNNAG00000016047)	NATD1 (ENSNNAG00000016053)	MAP2K3 (ENSNNAG00000016061)	ENSNNAG00000016085	CPSF4 (ENSNNAG00000016093)	PTCD1 (ENSNNAG00000016099)	BUD31 (ENSNNAG00000016111)	PDAP1 (ENSNNAG00000016121)	ARPC1B (ENSNNAG00000016131)	ARPC1A (ENSNNAG00000016149)	ENSNNAG00000016182	KPNA7 (ENSNNAG00000016223)	SMURF1 (ENSNNAG00000016275)	RNF216 (ENSNNAG00000016285) #22	ENSNNAG00000016312 #23	ENSNNAG00000016321 #23	ACTB (ENSNNAG00000007940) #24	FBXL18 (ENSNNAG00000007962) #25	TNRC18 (ENSNNAG00000007985) #26	SLC29A4 (ENSNNAG00000008031) #27	WIPI2 (ENSNNAG00000008185) #28	MMD2 (ENSNNAG00000008226) #29	RADIL (ENSNNAG00000008297) #30	AP5Z1 (ENSNNAG00000008991) #32	FOXK1 (ENSNNAG00000009066) #33	ENSNNAG00000009103	ENSNNAG00000009204	ENSNNAG00000010331	SDK1 (ENSNNAG00000010369) #34
Lizard	MODERN SPECIES	1327						ATP5MF (ENSACAG00000035548)	CPSF4 (ENSACAG00000042948)	PTCD1 (ENSACAG00000012871)	BUD31 (ENSACAG00000012867)	PDAP1 (ENSACAG00000038752)	ENSACAG00000038015	ARPC1A (ENSACAG00000012777)	ENSACAG00000011927	SMURF1 (ENSACAG00000011792)	ENSACAG00000026600	ENSACAG00000011713 #22	FSCN1 (ENSACAG00000038737) #23
Anura	ANCESTRAL SPECIES	370														ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00390000015109 #25
Leishan spiny toad	MODERN SPECIES	10	ENSLLEG00000023493	GLS (ENSLLEG00000023187)	ENSLLEG00000023151	NAB1 (ENSLLEG00000023090)	VPS16 (ENSLLEG00000022652)	TBCCD1 (ENSLLEG00000022414)	ENSLLEG00000022365	DNAJB11 (ENSLLEG00000021973)	PFKL (ENSLLEG00000021027)	ETV5 (ENSLLEG00000020770)	ENSLLEG00000020752	GTF3C3 (ENSLLEG00000020452)	ENSLLEG00000020101	CALCRL (ENSLLEG00000019529)	ENSLLEG00000019386	RNF216 (ENSLLEG00000019172) #22	FSCN1 (ENSLLEG00000019010) #23	FBXL18 (ENSLLEG00000018952) #25	ENSLLEG00000018904	ENSLLEG00000018629 ##24	ENSLLEG00000018003 #26	ENSLLEG00000018302 #26	ENSLLEG00000017934	ENSLLEG00000017910	DNASE1L3 (ENSLLEG00000017824)	ITGAV (ENSLLEG00000017273)	CARD11 (ENSLLEG00000016801) #35	FOXK1 (ENSLLEG00000016690) #33	ENSLLEG00000016662	ENSLLEG00000016640	SLC29A4 (ENSLLEG00000016445) #27
Frog	MODERN SPECIES	9	XB5749127 [provisional] (ENSXETG00000009881)	ankar (ENSXETG00000025109)	osgepl1 (ENSXETG00000009883)	ormdl1 (ENSXETG00000047362)	pms1 (ENSXETG00000009885)	mstn.2 (ENSXETG00000043668)	mstn.1 (ENSXETG00000048016)	ptcd1 (ENSXETG00000009891)	cpsf4 (ENSXETG00000009892)	kcnj12 (ENSXETG00000046715)	atp5mf (ENSXETG00000043524)	kpna7 (ENSXETG00000007497)	ENSXETG00000034868	ENSXETG00000041441	smurf1 (ENSXETG00000007498)	rnf216 (ENSXETG00000044685) #22	fscn1 (ENSXETG00000007501) #23	fbxl18 (ENSXETG00000007502) #25	ENSXETG00000047797	tnrc18 (ENSXETG00000007504) #26	actb (ENSXETG00000025116) ##24	ENSXETG00000046251	hspe1 (ENSXETG00000007510)	hspd1 (ENSXETG00000007509)	tra2b (ENSXETG00000007511)	mob4 (ENSXETG00000025118)	ENSXETG00000045791	calcrl (ENSXETG00000013895)	itgav (ENSXETG00000013317)	zc3h15 (ENSXETG00000013336)	ENSXETG00000046487
Coelacanth	MODERN SPECIES	345		ENSLACG00000005568	atp5mf (ENSLACG00000010797)	CPSF4 (ENSLACG00000010938)	PTCD1 (ENSLACG00000011172)	BUD31 (ENSLACG00000011373)	PDAP1 (ENSLACG00000011502)	ARPC1B (ENSLACG00000011837)	ARPC1A (ENSLACG00000012158)	ENSLACG00000012445	KPNA7 (ENSLACG00000013531)	SMURF1 (ENSLACG00000014191)	ENSLACG00000014575	ENSLACG00000015251	ENSLACG00000015668	RNF216 (ENSLACG00000015715) #22	FSCN1 (ENSLACG00000016447) #23	ENSLACG00000016952 ##24	ENSLACG00000017094	ENSLACG00000017098	FBXL18 (ENSLACG00000017111) #25	TNRC18 (ENSLACG00000017249) #26
Actinopterygii	ANCESTRAL SPECIES	138												ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00940000165400	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00950000182960.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701
Neopterygii	ANCESTRAL SPECIES	6	ENSGT00390000014667	ENSGT00940000168279	ENSGT00390000004323.b	ENSGT00940000162543	ENSGT00940000157972 #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT00390000002752	ENSGT00940000158127	ENSGT01050000244891.B	ENSGT00940000158690	ENSGT00940000165400	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00950000182960.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00400000022459	ENSGT00390000010052.a
Osteoglossocephalai	ANCESTRAL SPECIES	186														ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00950000182960.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00940000153974.A	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00400000022459	ENSGT00390000010052.a
Osteoglossiformes	ANCESTRAL SPECIES	99	ENSGT00550000074913.f	ENSGT00390000017551	ENSGT00940000157636 #36	ENSGT00940000158573.f #35	ENSGT00940000157747.b #34	ENSGT00950000182958.b.a.a.a.b	ENSGT00940000159507.h #33	ENSGT00940000159293.g #30	ENSGT00940000157972.a #29	ENSGT00940000155537.b #28	ENSGT00950000183183.b.b.b	ENSGT00950000183183.b.a.a	ENSGT00940000160705.C.b.c.b	ENSGT00940000158690.c	ENSGT00940000165400.q	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.b #23	ENSGT00950000182960.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099.v.b #26	ENSGT00950000182898.a.b.d #27	ENSGT00950000182957.b.a.b.a.b.a	ENSGT00950000182957.b.a.b.a.b.b
Asian bonytongue	MODERN SPECIES	12	gna12a (ENSSFOG00015029829) #36	CARD11 (ENSSFOG00015006221) #35	SDK1 (ENSSFOG00015005050) #34	cyp3a65 (ENSSFOG00015005145)	ENSSFOG00015004677	cyp3a65 (ENSSFOG00015003914)	FOXK1 (ENSSFOG00015003826) #33	radil (ENSSFOG00015003792) #30	MMD2 (ENSSFOG00015030866) #29	WIPI2 (ENSSFOG00015003706) #28	arpc1b (ENSSFOG00015003662)	ARPC1A (ENSSFOG00015003595)	ENSSFOG00015003478	SMURF1 (ENSSFOG00015003386)	ENSSFOG00015003373	RNF216 (ENSSFOG00015003365) #22	FSCN1 (ENSSFOG00015028791) #23	ENSSFOG00015003294 ##24	fbxl18 (ENSSFOG00015003278) #25	TNRC18 (ENSSFOG00015003261) #26	SLC29A4 (ENSSFOG00015003203) #27	ENSSFOG00015003168	ENSSFOG00015003116	ears2 (ENSSFOG00015019361)	HS3ST4 (ENSSFOG00015024007)	hs3st2 (ENSSFOG00015005525)	USP31 (ENSSFOG00015019296)	cog7 (ENSSFOG00015019251)	ENSSFOG00015019229	ENSSFOG00015019215	pdpk1b (ENSSFOG00015019160)
P. kingsleyae	MODERN SPECIES	144	EIF3B (ENSPKIG00000011735)	brat1 (ENSPKIG00000011698)	GNA12 (ENSPKIG00000011669) #36	CARD11 (ENSPKIG00000011579) #35	SDK1 (ENSPKIG00000011127) #34	cyp3a65 (ENSPKIG00000010991)	FOXK1 (ENSPKIG00000010956) #33	radil (ENSPKIG00000010919) #30	MMD2 (ENSPKIG00000010889) #29	WIPI2 (ENSPKIG00000010854) #28	arpc1b (ENSPKIG00000010821)	ARPC1A (ENSPKIG00000010763)	SMURF1 (ENSPKIG00000010654)	ENSPKIG00000010588	ENSPKIG00000010562	RNF216 (ENSPKIG00000010505) #22	fscn1a (ENSPKIG00000010464) #23	ENSPKIG00000010452 ##24	fbxl18 (ENSPKIG00000010437) #25	ENSPKIG00000010347 #26	ENSPKIG00000010290	ENSPKIG00000010234
Clupeocephala	ANCESTRAL SPECIES	122	ENSGT00390000000341	ENSGT00460000041594	ENSGT00950000183060.a.a.d.b	ENSGT00940000157636 #36	ENSGT00940000158573 #35	ENSGT00940000157747 #34	ENSGT00950000182958.b.a.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b ##24	ENSGT00950000182960.a.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000153974.A	ENSGT00400000022459	ENSGT00390000010052.b	ENSGT00390000013127.b	ENSGT00390000009298	ENSGT00930000151032.A	ENSGT00940000167865	ENSGT00950000182935.B.b.d.b	ENSGT00940000156666
Otomorpha	ANCESTRAL SPECIES	12	ENSGT00940000156614.b	ENSGT00550000074913.i	ENSGT00980000201699.A	ENSGT00940000157636.c #36	ENSGT00940000158573 #35	ENSGT00940000157747.y #34	ENSGT00950000182958.b.a.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b.o #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643
Otophysi	ANCESTRAL SPECIES	34	ENSGT00940000156614.b	ENSGT00550000074913.i	ENSGT00980000201699.A	ENSGT00940000157636.c #36	ENSGT00940000158573 #35	ENSGT00940000157747.y #34	ENSGT00950000182958.b.a.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b.d.a.b ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b.o #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979
Characiphysae	ANCESTRAL SPECIES	10	ENSGT00940000156614.b.j	ENSGT00550000074913.i	ENSGT00940000157636.c #36	ENSGT00940000158573 #35	ENSGT00940000157747.y #34	ENSGT00950000182958.b.a.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b.d.a.b ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b.o #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979
Characiphysae_b	ANCESTRAL SPECIES	1	ENSGT00940000157636.c #36	ENSGT00940000158573 #35	ENSGT00940000157747.y #34	ENSGT00950000182958.b.a.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT00390000002752	ENSGT00940000166074.B	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b.d.a.b ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b.o #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979
Characoidei	ANCESTRAL SPECIES	3	ENSGT00940000156614.b.j	ENSGT00550000074913.i	ENSGT00940000157636.c #36	ENSGT00940000158573 #35	ENSGT00940000157747.y #34	ENSGT00950000182958.b.a.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT01030000234534.C	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b.d.a.b ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b.o #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979
Mexicana tetra	MODERN SPECIES	15	ap5z1 (ENSAMXG00000009967) #32	mmd2a (ENSAMXG00000030134) #29	wipi2 (ENSAMXG00000009985) #28	arpc1b (ENSAMXG00000009992)	arpc1a (ENSAMXG00000009997)	ENSAMXG00000010027	smurf1 (ENSAMXG00000010087)	micall2a (ENSAMXG00000003783)	ENSAMXG00000030924	INTS1 (ENSAMXG00000001060)	mafk (ENSAMXG00000001047)	tmem184a (ENSAMXG00000039767)	psmg3 (ENSAMXG00000030051)	ENSAMXG00000042959	ENSAMXG00000025542	RNF216 (ENSAMXG00000010094) #22	fscn1a (ENSAMXG00000031207) #23	actb2 (ENSAMXG00000037226) ##24	TNRC18 (ENSAMXG00000010115) #26	slc29a4a (ENSAMXG00000010125) #27	atp5mf (ENSAMXG00000035415)	cpsf4 (ENSAMXG00000031647)	bud31 (ENSAMXG00000010164)	pdap1b (ENSAMXG00000032699)	shmt1 (ENSAMXG00000010173)	smcr8a (ENSAMXG00000041003)	TOP3A (ENSAMXG00000010181)	flii (ENSAMXG00000010194)	znf598 (ENSAMXG00000010217)	syngr3a (ENSAMXG00000043644)	gfer (ENSAMXG00000010225)
Red-bellied piranha	MODERN SPECIES	89	chst12a (ENSPNAG00000021656)	eif3ba (ENSPNAG00000021677)	gna12a (ENSPNAG00000021705) #36	CARD11 (ENSPNAG00000021827) #35	SDK1 (ENSPNAG00000022156) #34	cyp3c4 (ENSPNAG00000022214)	foxk1 (ENSPNAG00000022234) #33	ap5z1 (ENSPNAG00000022269) #32	mmd2a (ENSPNAG00000022319) #29	wipi2 (ENSPNAG00000022384) #28	arpc1b (ENSPNAG00000022408)	arpc1a (ENSPNAG00000022456)	ENSPNAG00000022571	smurf1 (ENSPNAG00000022618)	ENSPNAG00000003722	RNF216 (ENSPNAG00000022632) #22	fscn1a (ENSPNAG00000022662) #23	actb2 (ENSPNAG00000022673) ##24	TNRC18 (ENSPNAG00000022709) #26	slc29a4a (ENSPNAG00000022751) #27	atp5mf (ENSPNAG00000022775)	cpsf4 (ENSPNAG00000003736)	bud31 (ENSPNAG00000022817)	pdap1b (ENSPNAG00000022846)	shmt1 (ENSPNAG00000022895)	smcr8a (ENSPNAG00000022908)	TOP3A (ENSPNAG00000022998)	flii (ENSPNAG00000005190)	znf598 (ENSPNAG00000023121)	syngr3a (ENSPNAG00000023146)	gfer (ENSPNAG00000023159)
Electric eel	MODERN SPECIES		ENSEEEG00000000022	chst12a (ENSEEEG00000000021)	eif3ba (ENSEEEG00000000020)	gna12a (ENSEEEG00000000019) #36	CARD11 (ENSEEEG00000000018) #35	SDK1 (ENSEEEG00000000017) #34	cyp3c4 (ENSEEEG00000000016)	foxk1 (ENSEEEG00000000015) #33	ap5z1 (ENSEEEG00000000014) #32	mmd2a (ENSEEEG00000000013) #29	wipi2 (ENSEEEG00000000012) #28	arpc1b (ENSEEEG00000000011)	arpc1a (ENSEEEG00000000010)	ENSEEEG00000000009	smurf1 (ENSEEEG00000000008)	RNF216 (ENSEEEG00000000006) #22	fscn1a (ENSEEEG00000000005) #23	actb2 (ENSEEEG00000000004) ##24	TNRC18 (ENSEEEG00000000003) #26	slc29a4a (ENSEEEG00000000002) #27
Channel catfish	MODERN SPECIES	16	chst12 (ENSIPUG00000018365)	eif3b (ENSIPUG00000018347)	gna12 (ENSIPUG00000018333) #36	card11 (ENSIPUG00000018235) #35	SDK1 (ENSIPUG00000017988) #34	cyp3a40 (ENSIPUG00000017942)	foxk1 (ENSIPUG00000017911) #33	ap5z1 (ENSIPUG00000017877) #32	mmd2 (ENSIPUG00000017843) #29	WIPI2 (ENSIPUG00000017786) #28	ARPC1B (ENSIPUG00000017735)	arpc1a (ENSIPUG00000017706)	ENSIPUG00000017631	smurf1 (ENSIPUG00000017588)	ENSIPUG00000017573	ENSIPUG00000017537 #22	fscn1 (ENSIPUG00000017523) #23	actb (ENSIPUG00000017486) ##24	twf1b (ENSIPUG00000017458)	tnrc18 (ENSIPUG00000017314) #26	slc29a4 (ENSIPUG00000017239) #27	atp5mf (ENSIPUG00000017219)	cpsf4 (ENSIPUG00000017147)	bud31 (ENSIPUG00000017126)	pdap1 (ENSIPUG00000017111)	shmt1 (ENSIPUG00000017041)	smcr8 (ENSIPUG00000017027)	top3a (ENSIPUG00000016972)	flii (ENSIPUG00000016799)	mgmt (ENSIPUG00000016768)	znf598 (ENSIPUG00000016692)
Cyprinoidei	ANCESTRAL SPECIES	56	ENSGT00550000074913.i	ENSGT00980000201699.A	ENSGT00940000157636.c #36	ENSGT00940000158573 #35	ENSGT00940000157747.y #34	ENSGT00950000182958.b.a.b.c.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000158690.e	ENSGT01030000234534.C	ENSGT00940000158690.f	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b.d.a.b ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b.o #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643	ENSGT00390000014178	ENSGT00950000182935.B.b.d.a	ENSGT00390000001979
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	182	ENSGT01070000253744.a.a.a.b.a.a.g.b	ENSGT00940000156614.b.g	ENSGT00550000074913.i.c	ENSGT00980000201699.A	ENSGT00940000157636.c.d #36	ENSGT00940000158573.l #35	ENSGT00940000157747.y.b #34	ENSGT00950000182958.b.a.b.c.b.a	ENSGT00940000159507.d #33	ENSGT00390000017592.i #32	ENSGT00940000157972.c.b #29	ENSGT00940000155537.g #28	ENSGT00950000183183.b.b.c	ENSGT00950000183183.b.a.l	ENSGT00940000158690.e.a	ENSGT00510000048032.k #22	ENSGT00950000183157.a.a.b.o.b.a #23	ENSGT00950000182960.a.a.b.d.a.b ##24	ENSGT00940000157099.t #26	ENSGT00950000182898.a.b.o.b #27	ENSGT00940000165557.i	ENSGT00940000155520.wb	ENSGT00390000014300.m	ENSGT00390000018509.a.r	ENSGT00390000002762.a.b.m	ENSGT00390000010052.a.a	ENSGT00940000156701.a	ENSGT00940000156643.a	ENSGT00390000014178.a	ENSGT00950000182935.B.b.d.a.a	ENSGT00390000001979.e.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	2030														smurf1 (ENSCARG00000051196)	ENSCARG00000053675	ENSCARG00000053686 #22	fscn1a (ENSCARG00000053801) #23	actb2 (ENSCARG00000053829) ##24	TNRC18 (ENSCARG00000053853) #26	slc29a4a (ENSCARG00000053894) #27	atp5mf (ENSCARG00000053922)	cpsf4 (ENSCARG00000054014)	bud31 (ENSCARG00000054131)	pdap1b (ENSCARG00000054169)	shmt1 (ENSCARG00000054203)	smcr8a (ENSCARG00000054542)	TOP3A (ENSCARG00000054697)	flii (ENSCARG00000058689)	znf598 (ENSCARG00000060853)	syngr3a (ENSCARG00000060864)	gfer (ENSCARG00000060873)
Goldfish	MODERN SPECIES	2112																ENSCARG00000042790 #22
Cyprininae_a	ANCESTRAL SPECIES	21	ENSGT00940000162164.f.b	ENSGT01070000253744.a.a.a.b.a.a.g.b	ENSGT00940000156614.b.g	ENSGT00550000074913.i.c	ENSGT00940000157636.c.d #36	ENSGT00940000158573.l #35	ENSGT00940000157747.y.b #34	ENSGT00950000182958.b.a.b.c.b.a	ENSGT00940000159507.d #33	ENSGT00390000017592.i #32	ENSGT00940000157972.c.b #29	ENSGT00940000155537.g #28	ENSGT00950000183183.b.b.c	ENSGT00940000158690.e.a	ENSGT01030000234534.C	ENSGT00510000048032.k #22	ENSGT00950000183157.a.a.b.o.b.a #23	ENSGT00950000182960.a.a.a.b ##24	ENSGT00940000157099.t #26	ENSGT00950000182898.a.b.o.b #27	ENSGT00940000165557.i	ENSGT00940000155520.wb	ENSGT00390000014300.m	ENSGT00390000018509.a.r	ENSGT00390000002762.a.b.m	ENSGT00390000010052.a.a	ENSGT00940000156701.a	ENSGT00940000156643.a	ENSGT00390000014178.a	ENSGT00950000182935.B.b.d.a.a	ENSGT00390000001979.e.a
Common carp reference	MODERN SPECIES	1	ENSCCRG00000060023	chst12a (ENSCCRG00000025342)	eif3ba (ENSCCRG00000076014)	gna12a (ENSCCRG00000061734) #36	ENSCCRG00000063825 #35	ENSCCRG00000072338	SDK1 (ENSCCRG00000055349) #34	cyp3c4 (ENSCCRG00000047631)	cyp3c4 (ENSCCRG00000030874)	ap5z1 (ENSCCRG00000058240) #32	mmd2a (ENSCCRG00000057213) #29	wipi2 (ENSCCRG00000075990) #28	arpc1b (ENSCCRG00000080423)	smurf1 (ENSCCRG00000001383)	ENSCCRG00000013477	RNF216 (ENSCCRG00000006398) #22	fscn1a (ENSCCRG00000001737) #23	actb2 (ENSCCRG00000001748) ##24	ENSCCRG00000007286 #26	slc29a4a (ENSCCRG00000035546) #27	atp5mf (ENSCCRG00000031258)	cpsf4 (ENSCCRG00000005959)	bud31 (ENSCCRG00000006005)	pdap1b (ENSCCRG00000006016)	shmt1 (ENSCCRG00000056003)	smcr8a (ENSCCRG00000077891)	TOP3A (ENSCCRG00000006080)	flii (ENSCCRG00000059665)	ENSCCRG00000069280	znf598 (ENSCCRG00000042440)	syngr3a (ENSCCRG00000038566)
Golden-line barbel	MODERN SPECIES	36	ENSSGRG00000021721	chst12a (ENSSGRG00000021722)	eif3ba (ENSSGRG00000021723)	gna12a (ENSSGRG00000021746) #36	CARD11 (ENSSGRG00000021748) #35	SDK1 (ENSSGRG00000022161) #34	cyp3c4 (ENSSGRG00000022236)	foxk1 (ENSSGRG00000022494) #33	ap5z1 (ENSSGRG00000022504) #32	mmd2a (ENSSGRG00000022508) #29	wipi2 (ENSSGRG00000022548) #28	arpc1b (ENSSGRG00000023235)	arpc1b (ENSSGRG00000023237)	arpc1a (ENSSGRG00000023238)	smurf1 (ENSSGRG00000023320)	ENSSGRG00000024121 #22	fscn1a (ENSSGRG00000024122) #23	ENSSGRG00000024123 ##24	TNRC18 (ENSSGRG00000024124) #26	slc29a4a (ENSSGRG00000024125) #27	bud31 (ENSSGRG00000024126)	shmt1 (ENSSGRG00000024138)	smcr8a (ENSSGRG00000024304)	TOP3A (ENSSGRG00000024311)	flii (ENSSGRG00000024630)	znf598 (ENSSGRG00000025187)	syngr3a (ENSSGRG00000025188)	gfer (ENSSGRG00000025189)	drg2 (ENSSGRG00000025197)	MYO15A (ENSSGRG00000025371)	llgl1 (ENSSGRG00000025389)
Cyprininae	ANCESTRAL SPECIES	545	ENSGT00940000158717.k	ENSGT00940000162164.e	ENSGT01070000253744.a.a.a.b.a.a.g.a	ENSGT00940000156614.b.h	ENSGT00550000074913.i.d	ENSGT00940000157636.c.c #36	ENSGT00940000158573.k #35	ENSGT00940000157747.y.a #34	ENSGT00940000159507.c #33	ENSGT00390000017592.j #32	ENSGT00940000157972.c.a #29	ENSGT00940000155537.h #28	ENSGT00950000183183.b.b.d	ENSGT00950000183183.b.a.k	ENSGT00940000158690.e.b	ENSGT00510000048032.l #22	ENSGT00950000183157.a.a.b.o.a #23
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	22	snn (ENSCARG00000008224)	zc3h7a (ENSCARG00000008281)	pla2g10 (ENSCARG00000008469)	axin1 (ENSCARG00000008481)	ENSCARG00000008503	ENSCARG00000008511	galr2b (ENSCARG00000008516)	zfand2a (ENSCARG00000008522)	UNCX (ENSCARG00000008529)	micall2a (ENSCARG00000008539)	ENSCARG00000008554	mafk (ENSCARG00000008760)	tmem184a (ENSCARG00000008768)	psmg3 (ENSCARG00000008822)	smurf1 (ENSCARG00000008858)	ENSCARG00000009183 #22	fscn1a (ENSCARG00000009241) #23	ENSCARG00000009249 #35	gna12a (ENSCARG00000009258) #36	eif3ba (ENSCARG00000009270)	chst12a (ENSCARG00000009328)	ENSCARG00000009334	grifin (ENSCARG00000009341)	lfng (ENSCARG00000009361)	TTYH3 (ENSCARG00000009419)	snx8a (ENSCARG00000009440)	ENSCARG00000009465	b9d1 (ENSCARG00000009471)	EPN2 (ENSCARG00000009481)	grapa (ENSCARG00000009514)	ENSCARG00000009518
Goldfish	MODERN SPECIES	22	cacng2a (ENSCARG00000070055)	ENSCARG00000070052	rpl3 (ENSCARG00000070047)	slc25a39 (ENSCARG00000070019)	rpl27 (ENSCARG00000070012)	RUNDC1 (ENSCARG00000070010)	grna (ENSCARG00000070007)	gps1 (ENSCARG00000070000)	prkar1aa (ENSCARG00000069996)	zgc:86896 (ENSCARG00000069994)	wipi1 (ENSCARG00000069989)	slc16a6b (ENSCARG00000069987)	gna13b (ENSCARG00000069986)	ABCC1 (ENSCARG00000067444)	smurf1 (ENSCARG00000066359)	ENSCARG00000066207 #22	ENSCARG00000066191	SDK1 (ENSCARG00000065885) #34	ap5z1 (ENSCARG00000065773) #32	mmd2a (ENSCARG00000065728) #29	wipi2 (ENSCARG00000065603) #28	arpc1b (ENSCARG00000065587)	arpc1a (ENSCARG00000065573)	olfm2a (ENSCARG00000065566)	trip10a (ENSCARG00000063979)	ENSCARG00000063880	p2ry11 (ENSCARG00000063869)	eif3g (ENSCARG00000063726)	dnmt1 (ENSCARG00000063315)	s1pr2 (ENSCARG00000063247)	ENSCARG00000063169
Cyprininae_a	ANCESTRAL SPECIES	307	ENSGT00940000162164.e	ENSGT01070000253744.a.a.a.b.a.a.g.a	ENSGT00940000156614.b.h	ENSGT00550000074913.i.d	ENSGT00940000157636.c.c #36	ENSGT00940000158573.k #35	ENSGT00940000157747.y.a #34	ENSGT00950000182958.b.a.b.c.a	ENSGT00940000159507.c #33	ENSGT00390000017592.j #32	ENSGT00940000157972.c.a #29	ENSGT00940000155537.h #28	ENSGT00950000183183.b.b.d	ENSGT00950000183183.b.a.k	ENSGT00940000158690.e.b	ENSGT00510000048032.l #22	ENSGT00950000183157.a.a.b.o.a #23	ENSGT00950000182960.a.a.b.d.a.b ##24	ENSGT00940000157099.s #26	ENSGT00950000182898.a.b.o.a #27	ENSGT00940000165557.h	ENSGT00940000155520.vb	ENSGT00390000014300.n	ENSGT00390000018509.a.q	ENSGT00390000002762.a.b.n	ENSGT00390000010052.a.b	ENSGT00940000156701.b	ENSGT00940000156643.b	ENSGT00390000014178.b	ENSGT00950000182935.B.b.d.a.b	ENSGT00390000001979.f
Common carp reference	MODERN SPECIES	3	grifin (ENSCCRG00000025337)	ENSCCRG00000077751	chst12a (ENSCCRG00000060908)	eif3ba (ENSCCRG00000025354)	CARD11 (ENSCCRG00000079965) #35	SDK1 (ENSCCRG00000063944) #34	ENSCCRG00000055534	foxk1 (ENSCCRG00000006272) #33	ap5z1 (ENSCCRG00000006288) #32	mmd2a (ENSCCRG00000007649) #29	wipi2 (ENSCCRG00000007681) #28	arpc1b (ENSCCRG00000007822)	arpc1a (ENSCCRG00000007863)	ENSCCRG00000015987	smurf1 (ENSCCRG00000007960)	RNF216 (ENSCCRG00000001719) #22	fscn1a (ENSCCRG00000055127) #23	ENSCCRG00000005914 #26	actb2 (ENSCCRG00000007233) ##24	slc29a4a (ENSCCRG00000029725) #27	atp5mf (ENSCCRG00000012602)	cpsf4 (ENSCCRG00000012607)	bud31 (ENSCCRG00000073893)	pdap1b (ENSCCRG00000068497)	shmt1 (ENSCCRG00000012623)	TOP3A (ENSCCRG00000012638)	smcr8a (ENSCCRG00000012627)	flii (ENSCCRG00000065292)	znf598 (ENSCCRG00000061252)	syngr3a (ENSCCRG00000055434)	drg2 (ENSCCRG00000058584)
Golden-line barbel	MODERN SPECIES	8	chst12a (ENSSGRG00000006636)	eif3ba (ENSSGRG00000006510)	gna12a (ENSSGRG00000006509) #36	CARD11 (ENSSGRG00000006508) #35	SDK1 (ENSSGRG00000004909) #34	ENSSGRG00000004847	cyp3c4 (ENSSGRG00000002398)	foxk1 (ENSSGRG00000002384) #33	ap5z1 (ENSSGRG00000002381) #32	mmd2a (ENSSGRG00000002379) #29	wipi2 (ENSSGRG00000002238) #28	arpc1b (ENSSGRG00000002202)	arpc1a (ENSSGRG00000002198)	smurf1 (ENSSGRG00000000663)	ENSSGRG00000000609	ENSSGRG00000000601 #22	fscn1a (ENSSGRG00000000599) #23	actb2 (ENSSGRG00000000280) ##24	ENSSGRG00000046677 #26	atp5mf (ENSSGRG00000046674)	cpsf4 (ENSSGRG00000046623)	bud31 (ENSSGRG00000046618)	pdap1b (ENSSGRG00000046617)	shmt1 (ENSSGRG00000046492)	smcr8a (ENSSGRG00000046490)	flii (ENSSGRG00000046171)	znf598 (ENSSGRG00000046158)	syngr3a (ENSSGRG00000046157)	gfer (ENSSGRG00000046156)	drg2 (ENSSGRG00000045994)	MYO15A (ENSSGRG00000045988)
Zebrafish	MODERN SPECIES	18	si:ch211-222n22.1 (ENSDARG00000097269)	SDK1 (ENSDARG00000078866) #34	cyp3c1 (ENSDARG00000015575)	ENSDARG00000037874	cyp3c3 (ENSDARG00000037873)	cyp3c4 (ENSDARG00000070021)	foxk1 (ENSDARG00000037872) #33	ap5z1 (ENSDARG00000078111) #32	mmd2a (ENSDARG00000087446) #29	wipi2 (ENSDARG00000037871) #28	arpc1b (ENSDARG00000027063)	arpc1a (ENSDARG00000008383)	smurf1 (ENSDARG00000016086)	ENSDARG00000096870	ENSDARG00000109826	RNF216 (ENSDARG00000087893) #22	fscn1a (ENSDARG00000059680) #23	actb2 (ENSDARG00000037870) ##24	TNRC18 (ENSDARG00000077052) #26	slc29a4a (ENSDARG00000059690) #27	atp5mf (ENSDARG00000037867)	ENSDARG00000116912	cpsf4 (ENSDARG00000020217)	bud31 (ENSDARG00000017084)	pdap1b (ENSDARG00000002967)	shmt1 (ENSDARG00000052816)	smcr8a (ENSDARG00000052818)	TOP3A (ENSDARG00000052827)	flii (ENSDARG00000059701)	znf598 (ENSDARG00000014945)	syngr3a (ENSDARG00000014871)
Clupeiformes	ANCESTRAL SPECIES	119	ENSGT00980000201699.A	ENSGT00940000157636.c #36	ENSGT00940000158573 #35	ENSGT00940000157747.y #34	ENSGT00950000182958.b.a.b	ENSGT00940000159507 #33	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00950000183183.b.b	ENSGT00950000183183.b.a	ENSGT00940000160705.C.b	ENSGT00390000002752	ENSGT00940000166074.B	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b #23	ENSGT00950000182960.a.a.b ##24	ENSGT00390000015109 #25	ENSGT00940000157099 #26	ENSGT00950000182898.a.b.o #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643
Denticle herring	MODERN SPECIES	17	chst12a (ENSDCDG00000014552)	eif3ba (ENSDCDG00000014514)	gna12a (ENSDCDG00000014502) #36	CARD11 (ENSDCDG00000014495) #35	SDK1 (ENSDCDG00000011464) #34	cyp3c4 (ENSDCDG00000008452)	foxk1 (ENSDCDG00000008373) #33	ap5z1 (ENSDCDG00000008330) #32	mmd2a (ENSDCDG00000008292) #29	wipi2 (ENSDCDG00000008004) #28	arpc1b (ENSDCDG00000007870)	arpc1a (ENSDCDG00000007835)	ENSDCDG00000007758	smurf1 (ENSDCDG00000007740)	ENSDCDG00000007733	ENSDCDG00000007718 #22	fscn1a (ENSDCDG00000007707) #23	actb2 (ENSDCDG00000007657) ##24	TNRC18 (ENSDCDG00000007644) #26	slc29a4a (ENSDCDG00000007633) #27	atp5mf (ENSDCDG00000007629)	cpsf4 (ENSDCDG00000007624)	bud31 (ENSDCDG00000007610)	pdap1b (ENSDCDG00000007605)	shmt1 (ENSDCDG00000005364)	smcr8a (ENSDCDG00000005352)	TOP3A (ENSDCDG00000005199)	flii (ENSDCDG00000004586)	rbbp6 (ENSDCDG00000004539)	TNRC6A (ENSDCDG00000004509)	ndufab1b (ENSDCDG00000004506)
Euteleosteomorpha	ANCESTRAL SPECIES	120										ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000014300	ENSGT00390000018509.a	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.c.b
Acanthomorphata	ANCESTRAL SPECIES	25										ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A
Euacanthomorphacea	ANCESTRAL SPECIES	5	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00990000211443	ENSGT00950000183045.A.b	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Percomorphaceae	ANCESTRAL SPECIES	3	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Percomorphaceae_B	ANCESTRAL SPECIES	2	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Percomorphaceae_C	ANCESTRAL SPECIES		ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Eupercaria	ANCESTRAL SPECIES	3	ENSGT00740000115744	ENSGT00970000196672	ENSGT00990000209944	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Eupecaria_A	ANCESTRAL SPECIES	5	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00970000196672	ENSGT00990000209944	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Ballan wrasse	MODERN SPECIES	394	ENSLBEG00000010715	mief1 (ENSLBEG00000010674)	ENSLBEG00000010639	TST (ENSLBEG00000010607)	mpst (ENSLBEG00000010592)	ube2ib (ENSLBEG00000010563)	ENSLBEG00000010526	ENSLBEG00000010483	chst12a (ENSLBEG00000010386)	CARD11 (ENSLBEG00000010287) #35	ap5z1 (ENSLBEG00000010211) #32	mmd2a (ENSLBEG00000010108) #29	ENSLBEG00000010076	wipi2 (ENSLBEG00000010024) #28	smurf1 (ENSLBEG00000009908)	ENSLBEG00000009850 #22	FSCN1 (ENSLBEG00000009785) #23	ENSLBEG00000009731 ##24	ENSLBEG00000009689 #26
Eupecaria_B	ANCESTRAL SPECIES		ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00970000196672	ENSGT00990000209944	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Perciformes	ANCESTRAL SPECIES	1	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00990000209944	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099.d #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Cottioidei	ANCESTRAL SPECIES	1	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00990000209944	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099.d #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Lumpfish	MODERN SPECIES	23	ENSCLMG00005012360	ENSCLMG00005012359	ENSCLMG00005012357	ENSCLMG00005012356	ENSCLMG00005012355	mpst (ENSCLMG00005012354)	ube2ib (ENSCLMG00005012352)	il2rb (ENSCLMG00005012351)	ENSCLMG00005012350	chst12a (ENSCLMG00005012349)	ENSCLMG00005012297	ap5z1 (ENSCLMG00005012231) #32	MMD2 (ENSCLMG00005012147) #29	wipi2 (ENSCLMG00005012140) #28	smurf1 (ENSCLMG00005010392)	RNF216 (ENSCLMG00005010369) #22	FSCN1 (ENSCLMG00005010366) #23	ENSCLMG00005010364 ##24	ENSCLMG00005010361 #26	slc29a4a (ENSCLMG00005010359) #27	atp5mf (ENSCLMG00005010357)	cpsf4 (ENSCLMG00005010356)	shmt1 (ENSCLMG00005006932)	pdap1b (ENSCLMG00005006885)	bud31 (ENSCLMG00005006882)	smcr8a (ENSCLMG00005006880)	TOP3A (ENSCLMG00005005202)	cbx7a (ENSCLMG00005005188)	ENSCLMG00005005172	xpnpep3 (ENSCLMG00005005139)	st13 (ENSCLMG00005005126)
Stickleback	MODERN SPECIES	10	ENSGACG00000008059	ENSGACG00000008055	ENSGACG00000008053	mpst (ENSGACG00000008039)	ENSGACG00000008012	il2rb (ENSGACG00000008005)	ENSGACG00000008001	chst12a (ENSGACG00000007992)	CARD11 (ENSGACG00000007978) #35	ap5z1 (ENSGACG00000007962) #32	mmd2a (ENSGACG00000007947) #29	wipi2 (ENSGACG00000007931) #28	ENSGACG00000007926	smurf1 (ENSGACG00000007912)	ENSGACG00000007911	ENSGACG00000007906 #22	FSCN1 (ENSGACG00000007892) #23	ENSGACG00000007836 ##24	ENSGACG00000007822 #26	ENSGACG00000007811 #26	slc29a4a (ENSGACG00000007807) #27	atp5mf (ENSGACG00000007796)	cpsf4 (ENSGACG00000007792)	shmt1 (ENSGACG00000007764)	bud31 (ENSGACG00000007759)	smcr8a (ENSGACG00000007755)	TOP3A (ENSGACG00000007735)	cbx7a (ENSGACG00000007724)	EP300 (ENSGACG00000007707)	xpnpep3 (ENSGACG00000007684)	st13 (ENSGACG00000007663)
Perciformes_a	ANCESTRAL SPECIES	1	ENSGT00970000196672	ENSGT00940000178559	ENSGT00990000209944	ENSGT00950000183045.A.b	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099.d #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Channel bull blenny	MODERN SPECIES	22	mief1 (ENSCGOG00000001788)	ENSCGOG00000001802	ENSCGOG00000001803	TST (ENSCGOG00000001809)	mpst (ENSCGOG00000001816)	ube2ib (ENSCGOG00000001819)	il2rb (ENSCGOG00000001900)	ENSCGOG00000001903	chst12a (ENSCGOG00000001904)	CARD11 (ENSCGOG00000001917) #35	ap5z1 (ENSCGOG00000002086) #32	MMD2 (ENSCGOG00000002155) #29	wipi2 (ENSCGOG00000002192) #28	ENSCGOG00000002827	smurf1 (ENSCGOG00000002905)	ENSCGOG00000003967 #22	FSCN1 (ENSCGOG00000004005) #23	actb2 (ENSCGOG00000004016) ##24	ENSCGOG00000004726 #26	slc29a4a (ENSCGOG00000004740) #27	cpsf4 (ENSCGOG00000004795)	atp5mf (ENSCGOG00000004791)	shmt1 (ENSCGOG00000004877)	pdap1b (ENSCGOG00000006059)	bud31 (ENSCGOG00000006063)	smcr8a (ENSCGOG00000006070)	TOP3A (ENSCGOG00000006110)	ENSCGOG00000007162	EP300 (ENSCGOG00000007191)	xpnpep3 (ENSCGOG00000008535)	st13 (ENSCGOG00000008674)
Pike perch	MODERN SPECIES	38	mief1 (ENSSLUG00000007958)	ENSSLUG00000007951	ENSSLUG00000007945	ENSSLUG00000007941	mpst (ENSSLUG00000007940)	ube2ib (ENSSLUG00000007925)	il2rb (ENSSLUG00000007917)	ENSSLUG00000007912	chst12a (ENSSLUG00000007909)	CARD11 (ENSSLUG00000007480) #35	ap5z1 (ENSSLUG00000007091) #32	MMD2 (ENSSLUG00000007019) #29	wipi2 (ENSSLUG00000006792) #28	ENSSLUG00000006719	smurf1 (ENSSLUG00000004895)	RNF216 (ENSSLUG00000004798) #22	FSCN1 (ENSSLUG00000004784) #23	ENSSLUG00000004774 ##24	ENSSLUG00000004760 #26	slc29a4a (ENSSLUG00000004736) #27	atp5mf (ENSSLUG00000004711)	cpsf4 (ENSSLUG00000004689)	shmt1 (ENSSLUG00000004456)	pdap1b (ENSSLUG00000004402)	bud31 (ENSSLUG00000004387)	smcr8a (ENSSLUG00000004379)	TOP3A (ENSSLUG00000002501)	cbx7a (ENSSLUG00000002361)	EP300 (ENSSLUG00000001890)	xpnpep3 (ENSSLUG00000001728)	st13 (ENSSLUG00000001707)
Eupecaria_C	ANCESTRAL SPECIES	17	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00970000196672	ENSGT00990000209944	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Gilthead seabream	MODERN SPECIES	15	ENSSAUG00010016344	mief1 (ENSSAUG00010016343)	ENSSAUG00010016342	ENSSAUG00010016340	mpst (ENSSAUG00010016339)	ENSSAUG00010016334	ENSSAUG00010016333	ENSSAUG00010016332	chst12a (ENSSAUG00010016330)	ENSSAUG00010016310	ap5z1 (ENSSAUG00010016205) #32	mmd2a (ENSSAUG00010016193) #29	wipi2 (ENSSAUG00010017739) #28	ENSSAUG00010017732	smurf1 (ENSSAUG00010015946)	RNF216 (ENSSAUG00010015458) #22	FSCN1 (ENSSAUG00010015448) #23	ENSSAUG00010015428 ##24	TNRC18 (ENSSAUG00010015422) #26	slc29a4a (ENSSAUG00010015410) #27	atp5mf (ENSSAUG00010015404)	cpsf4 (ENSSAUG00010015402)	shmt1 (ENSSAUG00010015227)	pdap1b (ENSSAUG00010015210)	bud31 (ENSSAUG00010015207)	smcr8a (ENSSAUG00010015206)	TOP3A (ENSSAUG00010015097)	cbx7a (ENSSAUG00010015081)	EP300 (ENSSAUG00010013614)	xpnpep3 (ENSSAUG00010013589)	st13 (ENSSAUG00010013492)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	35	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00970000196672	ENSGT00990000209944	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
European seabass	MODERN SPECIES	21	ENSDLAG00005004808	mief1 (ENSDLAG00005004893)	ENSDLAG00005029048	ENSDLAG00005028464	ENSDLAG00005004924	mpst (ENSDLAG00005004928)	ENSDLAG00005004936	il2rb (ENSDLAG00005031516)	ENSDLAG00005005000	ENSDLAG00005005025	ap5z1 (ENSDLAG00005005205) #32	MMD2 (ENSDLAG00005033203) #29	wipi2 (ENSDLAG00005005248) #28	ENSDLAG00005005438	smurf1 (ENSDLAG00005005887)	RNF216 (ENSDLAG00005006912) #22	FSCN1 (ENSDLAG00005007046) #23	ENSDLAG00005028561 ##24	TNRC18 (ENSDLAG00005007088) #26	slc29a4a (ENSDLAG00005007426) #27	ENSDLAG00005007485	cpsf4 (ENSDLAG00005030914)	ENSDLAG00005007543	ENSDLAG00005007959	ENSDLAG00005007986	ENSDLAG00005008007	cbx7a (ENSDLAG00005008257)	EP300 (ENSDLAG00005008265)	xpnpep3 (ENSDLAG00005031557)	st13 (ENSDLAG00005008416)	ENSDLAG00005008437
Large yellow croaker	MODERN SPECIES	483	mief1 (ENSLCRG00005008458)	ENSLCRG00005008459	ENSLCRG00005008461	TST (ENSLCRG00005008462)	mpst (ENSLCRG00005008463)	ENSLCRG00005008466	il2rb (ENSLCRG00005008470)	C1QTNF6 (ENSLCRG00005008472)	chst12a (ENSLCRG00005008473)	CARD11 (ENSLCRG00005008474) #35	ap5z1 (ENSLCRG00005008483) #32	mmd2a (ENSLCRG00005008949) #29	wipi2 (ENSLCRG00005008952) #28	ENSLCRG00005008973	smurf1 (ENSLCRG00005008991)	RNF216 (ENSLCRG00005009608) #22	FSCN1 (ENSLCRG00005009652) #23	ENSLCRG00005009660 ##24	TNRC18 (ENSLCRG00005009693) #26	slc29a4a (ENSLCRG00005009699) #27	atp5mf (ENSLCRG00005009727)	cpsf4 (ENSLCRG00005009728)	shmt1 (ENSLCRG00005009735)	pdap1b (ENSLCRG00005011336)	bud31 (ENSLCRG00005011339)	smcr8a (ENSLCRG00005011345)	TOP3A (ENSLCRG00005011370)	cbx7a (ENSLCRG00005011778)	EP300 (ENSLCRG00005011793)	xpnpep3 (ENSLCRG00005012027)	st13 (ENSLCRG00005012219)
Percomorphaceae_D	ANCESTRAL SPECIES	1	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Carangaria	ANCESTRAL SPECIES	4	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Carangaria_A	ANCESTRAL SPECIES	12	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Seriola	ANCESTRAL SPECIES	23	ENSGT00530000063801.a.b	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.d	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000154598	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Greater amberjack	MODERN SPECIES	90	mief1 (ENSSDUG00000018158)	ENSSDUG00000018180	ENSSDUG00000018187	mpst (ENSSDUG00000018202)	ENSSDUG00000018210	il2rb (ENSSDUG00000018223)	ENSSDUG00000018239	papola (ENSSDUG00000018247)	chst12a (ENSSDUG00000018290)	ENSSDUG00000018311	ap5z1 (ENSSDUG00000018384) #32	mmd2a (ENSSDUG00000018411) #29	wipi2 (ENSSDUG00000018440) #28	ENSSDUG00000018482	smurf1 (ENSSDUG00000018578)	RNF216 (ENSSDUG00000018678) #22	FSCN1 (ENSSDUG00000018700) #23	ENSSDUG00000018712 ##24	TNRC18 (ENSSDUG00000018737) #26	slc29a4a (ENSSDUG00000018852) #27	atp5mf (ENSSDUG00000018902)	cpsf4 (ENSSDUG00000018887)	shmt1 (ENSSDUG00000018925)	pdap1b (ENSSDUG00000018958)	bud31 (ENSSDUG00000018971)	smcr8a (ENSSDUG00000018983)	TOP3A (ENSSDUG00000018992)	cbx7a (ENSSDUG00000019053)	EP300 (ENSSDUG00000019084)	xpnpep3 (ENSSDUG00000019212)	st13 (ENSSDUG00000000080)
Yellowtail amberjack	MODERN SPECIES	3256	mief1 (ENSSLDG00000020322)	ENSSLDG00000020310	TST (ENSSLDG00000020283)	mpst (ENSSLDG00000020278)	ENSSLDG00000020261	ENSSLDG00000020153	C1QTNF6 (ENSSLDG00000020140)	papola (ENSSLDG00000020094)	chst12a (ENSSLDG00000020080)	CARD11 (ENSSLDG00000020041) #35	ap5z1 (ENSSLDG00000020003) #32	mmd2a (ENSSLDG00000019987) #29	wipi2 (ENSSLDG00000019957) #28	ENSSLDG00000019872	smurf1 (ENSSLDG00000019820)	ENSSLDG00000019779 #22	RRP36 (ENSSLDG00000019741)
Barramundi perch	MODERN SPECIES	147	ENSLCAG00010009656	ENSLCAG00010009663	TST (ENSLCAG00010009666)	mpst (ENSLCAG00010009670)	ENSLCAG00010009675	ENSLCAG00010009694	ENSLCAG00010009698	chst12a (ENSLCAG00010009699)	ENSLCAG00010009702	ENSLCAG00010009712	ap5z1 (ENSLCAG00010009758) #32	MMD2 (ENSLCAG00010009861) #29	wipi2 (ENSLCAG00010009871) #28	ENSLCAG00010009895	smurf1 (ENSLCAG00010010006)	RNF216 (ENSLCAG00010010434) #22	FSCN1 (ENSLCAG00010010462) #23	ENSLCAG00010010498 ##24	TNRC18 (ENSLCAG00010010662) #26	slc29a4a (ENSLCAG00010010671) #27	atp5mf (ENSLCAG00010010678)	cpsf4 (ENSLCAG00010010683)	shmt1 (ENSLCAG00010010699)	pdap1b (ENSLCAG00010010730)	bud31 (ENSLCAG00010010738)	smcr8a (ENSLCAG00010010747)	TOP3A (ENSLCAG00010010786)	cbx7a (ENSLCAG00010010903)	EP300 (ENSLCAG00010010925)	xpnpep3 (ENSLCAG00010011016)	st13 (ENSLCAG00010011035)
Pleuronectoidei	ANCESTRAL SPECIES	2	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000160705.C.b	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Turbot	MODERN SPECIES	10	ENSSMAG00000007115	ENSSMAG00000007061	ENSSMAG00000007006	ENSSMAG00000034982	ENSSMAG00000036112	ENSSMAG00000033439	ENSSMAG00000006909	ENSSMAG00000037129	ENSSMAG00000006866	ENSSMAG00000006824	ap5z1 (ENSSMAG00000006802) #32	ENSSMAG00000006771 #29	wipi2 (ENSSMAG00000006740) #28	ENSSMAG00000006644	ENSSMAG00000006623	RNF216 (ENSSMAG00000006611) #22	FSCN1 (ENSSMAG00000006599) #23	ENSSMAG00000006528 #26	ACTB (ENSSMAG00000006565) #24	slc29a4a (ENSSMAG00000006475) #27	ENSSMAG00000006396	cpsf4 (ENSSMAG00000006374)	shmt1 (ENSSMAG00000006361)	ENSSMAG00000006267	bud31 (ENSSMAG00000034362)	ENSSMAG00000006220	ENSSMAG00000006179	cbx7a (ENSSMAG00000006170)	ENSSMAG00000006120	xpnpep3 (ENSSMAG00000006101)	st13 (ENSSMAG00000006090)
Tongue sole	MODERN SPECIES	8	mief1 (ENSCSEG00000006260)	ENSCSEG00000006258	ENSCSEG00000006255	mpst (ENSCSEG00000006250)	ENSCSEG00000006232	mpst (ENSCSEG00000006230)	ENSCSEG00000006210	ENSCSEG00000006203	chst12a (ENSCSEG00000006200)	CARD11 (ENSCSEG00000006194) #35	ap5z1 (ENSCSEG00000006177) #32	mmd2a (ENSCSEG00000006170) #29	wipi2 (ENSCSEG00000006152) #28	ENSCSEG00000006134	smurf1 (ENSCSEG00000006119)	ENSCSEG00000019168 #22	FSCN1 (ENSCSEG00000019160) #23	actb (ENSCSEG00000019142) ##24	ENSCSEG00000019119 #26	ENSCSEG00000019109 #26	slc29a4a (ENSCSEG00000019097) #27	atp5mf (ENSCSEG00000019090)	cpsf4 (ENSCSEG00000019055)	ENSCSEG00000019045	GRIN2A (ENSCSEG00000019030)	ENSCSEG00000018821	emp2 (ENSCSEG00000018813)	nubp1 (ENSCSEG00000018797)	CIITA (ENSCSEG00000018788)	dexi (ENSCSEG00000018784)	CLEC16A (ENSCSEG00000018748)
Anabantaria	ANCESTRAL SPECIES	6	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00970000196672	ENSGT00950000183045.A.b	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Zig-zag eel	MODERN SPECIES	22	ENSMAMG00000005608	mief1 (ENSMAMG00000005636)	ENSMAMG00000025452	ENSMAMG00000025261	mpst (ENSMAMG00000026004)	ENSMAMG00000005676	il2rb (ENSMAMG00000005698)	ENSMAMG00000005704	ENSMAMG00000025120	ENSMAMG00000005729 #35	ap5z1 (ENSMAMG00000005791) #32	MMD2 (ENSMAMG00000005812) #29	wipi2 (ENSMAMG00000005834) #28	ENSMAMG00000005888	smurf1 (ENSMAMG00000005989)	RNF216 (ENSMAMG00000006051) #22	FSCN1 (ENSMAMG00000006071) #23	ENSMAMG00000006109 ##24	TNRC18 (ENSMAMG00000006142) #26	slc29a4a (ENSMAMG00000006177) #27	ENSMAMG00000006221	cpsf4 (ENSMAMG00000006244)	shmt1 (ENSMAMG00000006285)	ENSMAMG00000006324	bud31 (ENSMAMG00000006354)	ENSMAMG00000006366	ENSMAMG00000006374	cbx7a (ENSMAMG00000006424)	ENSMAMG00000006590	ENSMAMG00000006706	xpnpep3 (ENSMAMG00000006750)
Anabantoidei	ANCESTRAL SPECIES	7	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00970000196672	ENSGT00950000183045.A.b	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Siamese fighting fish	MODERN SPECIES	19	atf4b (ENSBSLG00000002400)	ENSBSLG00000002308	ENSBSLG00000002254	mief1 (ENSBSLG00000002229)	ENSBSLG00000002220	mpst (ENSBSLG00000002209)	ENSBSLG00000002186	il2rb (ENSBSLG00000002162)	ENSBSLG00000002143	chst12a (ENSBSLG00000002130)	CARD11 (ENSBSLG00000002054) #35	ap5z1 (ENSBSLG00000002014) #32	MMD2 (ENSBSLG00000002000) #29	wipi2 (ENSBSLG00000001996) #28	smurf1 (ENSBSLG00000001842)	ENSBSLG00000001775 #22	ENSBSLG00000001756 #23	ENSBSLG00000001690 ##24	TNRC18 (ENSBSLG00000021039) #26	slc29a4a (ENSBSLG00000020485) #27	atp5mf (ENSBSLG00000020484)	cpsf4 (ENSBSLG00000020471)	shmt1 (ENSBSLG00000020011)	pdap1b (ENSBSLG00000019956)	bud31 (ENSBSLG00000019947)	smcr8a (ENSBSLG00000019940)	TOP3A (ENSBSLG00000019675)	ENSBSLG00000019668	EP300 (ENSBSLG00000018845)	xpnpep3 (ENSBSLG00000018571)	st13 (ENSBSLG00000018560)
Climbing perch	MODERN SPECIES	21	mief1 (ENSATEG00000006239)	ENSATEG00000029794	ENSATEG00000030156	ENSATEG00000025808	mpst (ENSATEG00000028103)	ENSATEG00000006302	il2rb (ENSATEG00000006333)	ENSATEG00000006340	ENSATEG00000006352	ENSATEG00000006382 #35	ap5z1 (ENSATEG00000006503) #32	MMD2 (ENSATEG00000006514) #29	wipi2 (ENSATEG00000006552) #28	ENSATEG00000006606	smurf1 (ENSATEG00000006799)	ENSATEG00000006873 #22	ENSATEG00000006883 #23	ENSATEG00000006911 ##24	ENSATEG00000006938 #26	slc29a4a (ENSATEG00000006954) #27	ENSATEG00000028258	cpsf4 (ENSATEG00000006994)	shmt1 (ENSATEG00000007061)	ENSATEG00000007106	bud31 (ENSATEG00000007134)	ENSATEG00000007153	ENSATEG00000007160	cbx7a (ENSATEG00000028506)	ENSATEG00000007245	xpnpep3 (ENSATEG00000007507)	st13 (ENSATEG00000007540)
Ovalentaria	ANCESTRAL SPECIES	1	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Atherinomorphae	ANCESTRAL SPECIES	6	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Cyprinodontiformes	ANCESTRAL SPECIES	3	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Aplocheiloidei	ANCESTRAL SPECIES	30	ENSGT00940000166816	ENSGT00530000063801.a.b	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00940000177422	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Mangrove rivulus	MODERN SPECIES	37	ENSKMAG00000016438	mief1 (ENSKMAG00000016398)	ENSKMAG00000016377	mpst (ENSKMAG00000016365)	mpst (ENSKMAG00000016347)	mpst (ENSKMAG00000016335)	ENSKMAG00000016317	ENSKMAG00000016305	C1QTNF6 (ENSKMAG00000016291)	chst12a (ENSKMAG00000016278)	CARD11 (ENSKMAG00000016241) #35	ap5z1 (ENSKMAG00000016203) #32	mmd2a (ENSKMAG00000016187) #29	wipi2 (ENSKMAG00000016149) #28	smurf1 (ENSKMAG00000016086)	RNF216 (ENSKMAG00000016053) #22	FSCN1 (ENSKMAG00000016031) #23	ENSKMAG00000016009 ##24	TNRC18 (ENSKMAG00000015814) #26	slc29a4a (ENSKMAG00000015698) #27	atp5mf (ENSKMAG00000015662)	cpsf4 (ENSKMAG00000015642)	shmt1 (ENSKMAG00000015600)	shmt1 (ENSKMAG00000015534)	pdap1b (ENSKMAG00000015491)	bud31 (ENSKMAG00000015481)	smcr8a (ENSKMAG00000015470)	TOP3A (ENSKMAG00000015416)	ENSKMAG00000015385	EP300 (ENSKMAG00000015334)	xpnpep3 (ENSKMAG00000015289)
Turquoise killifish	MODERN SPECIES	1612	SMCR7A (ENSNFUG00015002956)	BX470254.1 (ENSNFUG00015002962)	mpst (ENSNFUG00015002965)	Nfu_g_1_019808 (ENSNFUG00015002970)	UBE2I (ENSNFUG00015002972)	ENSNFUG00015002975	ENSNFUG00015002980	C1QTNF6A (ENSNFUG00015002982)	CHST12A (ENSNFUG00015002983)	CARD11 (ENSNFUG00015002989) #35	ap5z1 (ENSNFUG00015003007) #32	ENSNFUG00015003024	MMD2 (ENSNFUG00015003032) #29	WIPI2 (ENSNFUG00015003056) #28	SMURF1 (ENSNFUG00015003090)	RNF216 (ENSNFUG00015003175) #22	FSCN1A (ENSNFUG00015003183) #23	ENSNFUG00015003210 ##24	TNRC18 (ENSNFUG00015003248) #26	slc29a4a (ENSNFUG00015003258) #27	ENSNFUG00015003269	AL928657.1 (ENSNFUG00015003273)	CPSF4 (ENSNFUG00015003278)	shmt1 (ENSNFUG00015003312)	PDAP1B (ENSNFUG00015003354)	BUD31 (ENSNFUG00015003359)	SMCR8A (ENSNFUG00015003364)	TOP3A (ENSNFUG00015003386)	cbx7a (ENSNFUG00015003485)	ENSNFUG00015003503	ENSNFUG00015003562
Cyprinodontoidei	ANCESTRAL SPECIES	22	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a.j	ENSGT00510000046773.a.b.c.a.i.b	ENSGT00510000046773.a.b.c.a.i.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b.l	ENSGT00390000002762.a.b.k	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A
Poeciliinae	ANCESTRAL SPECIES	1	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a.j	ENSGT00510000046773.a.b.c.a.i.b	ENSGT00510000046773.a.b.c.a.i.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b.l	ENSGT00390000002762.a.b.k	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A
Poecilia	ANCESTRAL SPECIES	18	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a.j	ENSGT00510000046773.a.b.c.a.i.b	ENSGT00510000046773.a.b.c.a.i.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b.l	ENSGT00390000002762.a.b.k	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A
NAME_6	ANCESTRAL SPECIES	63	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a.j	ENSGT00510000046773.a.b.c.a.i.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b.l	ENSGT00390000002762.a.b.k	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A
Sailfin molly	MODERN SPECIES	819												ap5z1 (ENSPLAG00000007487) #32	MMD2 (ENSPLAG00000007502) #29	wipi2 (ENSPLAG00000007541) #28	smurf1 (ENSPLAG00000007577)	RNF216 (ENSPLAG00000007589) #22	FSCN1 (ENSPLAG00000000158) #23	ENSPLAG00000007645 ##24	TNRC18 (ENSPLAG00000007676) #26
Amazon molly	MODERN SPECIES	600							nqo1 (ENSPFOG00000015593)	GABARAPL2 (ENSPFOG00000015577)	ENSPFOG00000015568	rpl12 (ENSPFOG00000015551)	pole3 (ENSPFOG00000015535)	kmt5b (ENSPFOG00000015505)	cd82a (ENSPFOG00000015431)	wipi2 (ENSPFOG00000015370) #28	smurf1 (ENSPFOG00000015224)	RNF216 (ENSPFOG00000015172) #22	FSCN1 (ENSPFOG00000015146) #23	ENSPFOG00000015123 ##24	TNRC18 (ENSPFOG00000015023) #26	slc29a4a (ENSPFOG00000014964) #27	atp5mf (ENSPFOG00000014956)	cpsf4 (ENSPFOG00000014912)	shmt1 (ENSPFOG00000014911)	shmt1 (ENSPFOG00000014784)	pdap1b (ENSPFOG00000014776)	bud31 (ENSPFOG00000014763)	smcr8a (ENSPFOG00000014749)	TOP3A (ENSPFOG00000014577)	cbx7a (ENSPFOG00000014553)	EP300 (ENSPFOG00000014408)	xpnpep3 (ENSPFOG00000014371)
Guppy	MODERN SPECIES	460	ENSPREG00000018679	ENSPREG00000018669	mpst (ENSPREG00000018653)	mpst (ENSPREG00000018638)	mpst (ENSPREG00000018626)	ENSPREG00000018610	ENSPREG00000018591	ENSPREG00000018579	chst12a (ENSPREG00000018573)	ENSPREG00000018562 #35	ENSPREG00000018546	ap5z1 (ENSPREG00000018514) #32	MMD2 (ENSPREG00000018489) #29	wipi2 (ENSPREG00000018468) #28	smurf1 (ENSPREG00000018426)	ENSPREG00000018368 #22	FSCN1 (ENSPREG00000018339) #23	actb (ENSPREG00000018292) ##24	TNRC18 (ENSPREG00000018258) #26	slc29a4a (ENSPREG00000018228) #27	atp5mf (ENSPREG00000018180)	cpsf4 (ENSPREG00000018166)	shmt1 (ENSPREG00000018149)	pdap1b (ENSPREG00000018130)	bud31 (ENSPREG00000018122)	smcr8a (ENSPREG00000018112)	TOP3A (ENSPREG00000018044)	ENSPREG00000018018	EP300 (ENSPREG00000017942)	xpnpep3 (ENSPREG00000017918)	st13 (ENSPREG00000017893)
Platyfish	MODERN SPECIES	7	ENSXMAG00000023763	ENSXMAG00000029235	mief1 (ENSXMAG00000001151)	ENSXMAG00000026576	mpst (ENSXMAG00000001146)	ENSXMAG00000001134	il2rb (ENSXMAG00000001127)	ENSXMAG00000001125	chst12a (ENSXMAG00000026379)	CARD11 (ENSXMAG00000001085) #35	ap5z1 (ENSXMAG00000001068) #32	MMD2 (ENSXMAG00000028136) #29	wipi2 (ENSXMAG00000001048) #28	smurf1 (ENSXMAG00000001013)	ENSXMAG00000024191	RNF216 (ENSXMAG00000001006) #22	FSCN1 (ENSXMAG00000000999) #23	ENSXMAG00000000982 ##24	TNRC18 (ENSXMAG00000000969) #26	slc29a4a (ENSXMAG00000025766) #27	cpsf4 (ENSXMAG00000024670)	atp5mf (ENSXMAG00000022540)	shmt1 (ENSXMAG00000003644)	pdap1b (ENSXMAG00000003656)	bud31 (ENSXMAG00000003664)	smcr8a (ENSXMAG00000003670)	TOP3A (ENSXMAG00000003671)	cbx7a (ENSXMAG00000024328)	EP300 (ENSXMAG00000003691)	xpnpep3 (ENSXMAG00000003707)	st13 (ENSXMAG00000003718)
NAME_4	ANCESTRAL SPECIES	36	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a.j	ENSGT00510000046773.a.b.c.a.i.b	ENSGT00510000046773.a.b.c.a.i.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b.l	ENSGT00390000002762.a.b.k	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A
Mummichog	MODERN SPECIES	395						mpst (ENSFHEG00000010388)	ENSFHEG00000010415	ENSFHEG00000010426	C1QTNF6 (ENSFHEG00000010432)	chst12a (ENSFHEG00000010465)	CARD11 (ENSFHEG00000010483) #35	ap5z1 (ENSFHEG00000010508) #32	mmd2a (ENSFHEG00000010533) #29	wipi2 (ENSFHEG00000010574) #28	smurf1 (ENSFHEG00000010695)	RNF216 (ENSFHEG00000010758) #22	FSCN1 (ENSFHEG00000010780) #23	ENSFHEG00000010793 ##24	ENSFHEG00000010803 #26	slc29a4a (ENSFHEG00000010836) #27	atp5mf (ENSFHEG00000010853)	cpsf4 (ENSFHEG00000010880)	shmt1 (ENSFHEG00000010906)	shmt1 (ENSFHEG00000010953)
Sheepshead minnow	MODERN SPECIES	287	ENSCVAG00000003396	ENSCVAG00000003409	ENSCVAG00000003417	ENSCVAG00000003420	ENSCVAG00000003433	mpst (ENSCVAG00000003437)	ENSCVAG00000003452	ENSCVAG00000003463	C1QTNF6 (ENSCVAG00000003468)	chst12a (ENSCVAG00000003482)	ENSCVAG00000003545	ap5z1 (ENSCVAG00000000108) #32	mmd2a (ENSCVAG00000003594) #29	wipi2 (ENSCVAG00000003619) #28	smurf1 (ENSCVAG00000003665)	RNF216 (ENSCVAG00000003675) #22	FSCN1 (ENSCVAG00000003683) #23	ENSCVAG00000003692	ENSCVAG00000003701 ##24	TNRC18 (ENSCVAG00000003741) #26
Oryzias	ANCESTRAL SPECIES		ENSGT00530000063801.a.b	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b.sb	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Oryzias_a	ANCESTRAL SPECIES	20	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00970000196672	ENSGT00950000183045.A.b	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b.sb	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Chinese medaka	MODERN SPECIES	907	ENSOSIG00000008222	atf4b (ENSOSIG00000008223)	ENSOSIG00000008224	ENSOSIG00000008225	mief1 (ENSOSIG00000008226)	ENSOSIG00000008227	ENSOSIG00000008228	ube2ib (ENSOSIG00000008229)	ENSOSIG00000008230	C1QTNF6 (ENSOSIG00000008231)	chst12a (ENSOSIG00000008232)	CARD11 (ENSOSIG00000008236) #35	ENSOSIG00000008285	wipi2 (ENSOSIG00000008296) #28	smurf1 (ENSOSIG00000008452)	ENSOSIG00000008771 #22	FSCN1 (ENSOSIG00000009275) #23	ENSOSIG00000009285 #24	ENSOSIG00000009378 #26	slc29a4a (ENSOSIG00000009387) #27	atp5mf (ENSOSIG00000009393)	cpsf4 (ENSOSIG00000009394)	shmt1 (ENSOSIG00000009422)	pdap1b (ENSOSIG00000009568)	bud31 (ENSOSIG00000009569)	smcr8a (ENSOSIG00000009570)	TOP3A (ENSOSIG00000009574)
Japanese Medaka HdrR	MODERN SPECIES	22	mief1 (ENSORLG00000013478)	ENSORLG00000022248	ENSORLG00000027830	mpst (ENSORLG00000029872)	mpst (ENSORLG00000013490)	ENSORLG00000013514	il2rb (ENSORLG00000013522)	C1QTNF6 (ENSORLG00000010706)	ENSORLG00000029259	chst12a (ENSORLG00000013533)	CARD11 (ENSORLG00000013537) #35	ap5z1 (ENSORLG00000013568) #32	mmd2a (ENSORLG00000027433) #29	wipi2 (ENSORLG00000013601) #28	smurf1 (ENSORLG00000013636)	RNF216 (ENSORLG00000013652) #22	FSCN1 (ENSORLG00000013664) #23	actb2 (ENSORLG00000013676) #24	TNRC18 (ENSORLG00000013686) #26	slc29a4a (ENSORLG00000013699) #27	ENSORLG00000027893	atp5mf (ENSORLG00000023475)	cpsf4 (ENSORLG00000022798)	shmt1 (ENSORLG00000013776)	pdap1b (ENSORLG00000028511)	bud31 (ENSORLG00000013809)	smcr8a (ENSORLG00000013820)	TOP3A (ENSORLG00000013858)	cbx7a (ENSORLG00000026459)	EP300 (ENSORLG00000013972)	xpnpep3 (ENSORLG00000014010)
Oryzias_b	ANCESTRAL SPECIES	30	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a.f	ENSGT00510000046773.a.b.c.a.e	ENSGT00550000075088.a.b	ENSGT00940000177422	ENSGT00940000160396	ENSGT00940000156614.b.sb	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Indian medaka	MODERN SPECIES	9	ENSOMEG00000004495	mief1 (ENSOMEG00000004506)	ENSOMEG00000004519	mpst (ENSOMEG00000004526)	ENSOMEG00000004607	mpst (ENSOMEG00000004645)	ENSOMEG00000004671	ENSOMEG00000004707	C1QTNF6 (ENSOMEG00000004726)	chst12a (ENSOMEG00000004762)	CARD11 (ENSOMEG00000004885) #35	ap5z1 (ENSOMEG00000001000) #32	mmd2a (ENSOMEG00000004957) #29	wipi2 (ENSOMEG00000004986) #28	smurf1 (ENSOMEG00000005021)	RNF216 (ENSOMEG00000005042) #22	FSCN1 (ENSOMEG00000005059) #23	ACTB (ENSOMEG00000000111) #24	TNRC18 (ENSOMEG00000005103) #26	slc29a4a (ENSOMEG00000005135) #27	atp5mf (ENSOMEG00000005152)	cpsf4 (ENSOMEG00000005176)	shmt1 (ENSOMEG00000005205)	pdap1b (ENSOMEG00000005224)	bud31 (ENSOMEG00000005234)	smcr8a (ENSOMEG00000005241)	TOP3A (ENSOMEG00000005276)	cbx7a (ENSOMEG00000005289)	EP300 (ENSOMEG00000005385)	xpnpep3 (ENSOMEG00000005454)	st13 (ENSOMEG00000005496)
Javanese ricefish	MODERN SPECIES	22	ENSOJAG00000015915	mief1 (ENSOJAG00000015895)	ENSOJAG00000015889	ENSOJAG00000015880	mpst (ENSOJAG00000015874)	mpst (ENSOJAG00000015869)	ENSOJAG00000015843	ENSOJAG00000015832	C1QTNF6 (ENSOJAG00000015826)	chst12a (ENSOJAG00000015821)	CARD11 (ENSOJAG00000015715) #35	ap5z1 (ENSOJAG00000015666) #32	mmd2a (ENSOJAG00000015657) #29	wipi2 (ENSOJAG00000015249) #28	smurf1 (ENSOJAG00000013851)	RNF216 (ENSOJAG00000013681) #22	FSCN1 (ENSOJAG00000013632) #23	ACTB (ENSOJAG00000013436) #24	ENSOJAG00000013405	slc29a4a (ENSOJAG00000013395) #27	atp5mf (ENSOJAG00000013368)	cpsf4 (ENSOJAG00000013354)	shmt1 (ENSOJAG00000013039)	pdap1b (ENSOJAG00000013025)	bud31 (ENSOJAG00000012994)	smcr8a (ENSOJAG00000012988)	cbx7a (ENSOJAG00000012266)	EP300 (ENSOJAG00000011158)	xpnpep3 (ENSOJAG00000010994)	st13 (ENSOJAG00000010970)	rbx1 (ENSOJAG00000010942)
Ovalentaria_B	ANCESTRAL SPECIES		ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Cichlidae	ANCESTRAL SPECIES	19	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b	ENSGT00940000155618
Pseudocrenilabrinae	ANCESTRAL SPECIES	1	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000018426	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	27	ENSGT01030000234789	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000018426	ENSGT00940000154208.d	ENSGT00940000156578.a.a	ENSGT00390000018542.a.b	ENSGT00440000039203.j	ENSGT00940000165277.b
Haplochromini	ANCESTRAL SPECIES	54	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000165470.d	ENSGT00390000004541.j	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300.b
Burton s mouthbrooder	MODERN SPECIES	753	ENSHBUG00000014502	ENSHBUG00000014491	mief1 (ENSHBUG00000014430)	ENSHBUG00000014407	mpst (ENSHBUG00000014402)	ENSHBUG00000014398	il2rb (ENSHBUG00000014372)	ENSHBUG00000014308	chst12a (ENSHBUG00000014302)	CARD11 (ENSHBUG00000014273) #35	ap5z1 (ENSHBUG00000014221) #32	mmd2a (ENSHBUG00000014183) #29	wipi2 (ENSHBUG00000014150) #28	ENSHBUG00000014076	smurf1 (ENSHBUG00000013857)	RNF216 (ENSHBUG00000013829) #22	FSCN1 (ENSHBUG00000013818) #23	ENSHBUG00000013796 ##24	ENSHBUG00000013766 #26	ENSHBUG00000013755 #26	slc29a4a (ENSHBUG00000000406) #27	cpsf4 (ENSHBUG00000013699)	atp5mf (ENSHBUG00000013687)	shmt1 (ENSHBUG00000013661)	pdap1b (ENSHBUG00000013591)	bud31 (ENSHBUG00000013563)
Haplochromini_A	ANCESTRAL SPECIES	37	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000165470.d	ENSGT00390000004541.j	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300.b	ENSGT00940000156053	ENSGT00390000002886.a.a.b	ENSGT00390000015360	ENSGT00390000002127	ENSGT00940000158180	ENSGT01050000244893.c.a.a.a
P. nyererei	MODERN SPECIES	427	ENSPNYG00000017999	ENSPNYG00000018005	mief1 (ENSPNYG00000018019)	ENSPNYG00000018038	mpst (ENSPNYG00000018047)	ube2ib (ENSPNYG00000018054)	il2rb (ENSPNYG00000018082)	ENSPNYG00000018136	chst12a (ENSPNYG00000018150)	CARD11 (ENSPNYG00000018165) #35	ap5z1 (ENSPNYG00000018222) #32	mmd2a (ENSPNYG00000018238) #29	wipi2 (ENSPNYG00000018273) #28	ENSPNYG00000018318	smurf1 (ENSPNYG00000018376)	ENSPNYG00000018397 #22	FSCN1 (ENSPNYG00000018408) #23	ENSPNYG00000018427 ##24	ENSPNYG00000018455 #26	slc29a4a (ENSPNYG00000018510) #27	atp5mf (ENSPNYG00000018539)	cpsf4 (ENSPNYG00000018559)	shmt1 (ENSPNYG00000018571)	pdap1b (ENSPNYG00000018608)	bud31 (ENSPNYG00000018630)	USP7 (ENSPNYG00000018660)	ENSPNYG00000018785	dctn5 (ENSPNYG00000018814)	ndufab1b (ENSPNYG00000018838)	TNRC6A (ENSPNYG00000018851)	ENSPNYG00000018879
Haplochromini_B	ANCESTRAL SPECIES	41	ENSGT01030000234789.n	ENSGT00940000155733.a.b	ENSGT00390000013127.a	ENSGT01030000234887	ENSGT00740000115744	ENSGT00510000046773.a.b.c.a	ENSGT00550000075088.a.b	ENSGT00510000049239.a.c	ENSGT00940000160396	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300.b	ENSGT00940000156053	ENSGT00390000002886.a.a.b	ENSGT00390000015360	ENSGT00390000002127	ENSGT00940000158180	ENSGT00940000159365.b.a.b
Zebra mbuna	MODERN SPECIES	1107	ENSMZEG00005006869	mief1 (ENSMZEG00005006902)	ENSMZEG00005006924	mpst (ENSMZEG00005006933)	ENSMZEG00005006940	il2rb (ENSMZEG00005006969)	ENSMZEG00005007014	chst12a (ENSMZEG00005007022)	CARD11 (ENSMZEG00005007053) #35	ap5z1 (ENSMZEG00005007127) #32	mmd2a (ENSMZEG00005007185) #29	wipi2 (ENSMZEG00005007214) #28	ENSMZEG00005007272	ENSMZEG00005007290	smurf1 (ENSMZEG00005007314)	RNF216 (ENSMZEG00005007337) #22	FSCN1 (ENSMZEG00005007362) #23	ENSMZEG00005007397 ##24	TNRC18 (ENSMZEG00005007439) #26	slc29a4a (ENSMZEG00005007481) #27	cpsf4 (ENSMZEG00005007515)	atp5mf (ENSMZEG00005007522)	shmt1 (ENSMZEG00005007542)	pdap1b (ENSMZEG00005007587)	bud31 (ENSMZEG00005007593)	USP7 (ENSMZEG00005007612)	ENSMZEG00005007687	dctn5 (ENSMZEG00005007705)	ndufab1b (ENSMZEG00005007730)	TNRC6A (ENSMZEG00005007756)	ENSMZEG00005007792
Eastern happy	MODERN SPECIES	16	ENSACLG00000011532	mief1 (ENSACLG00000011513)	ENSACLG00000011509	ENSACLG00000011507	ENSACLG00000011503	mpst (ENSACLG00000011501)	ENSACLG00000011495	ENSACLG00000011466	ENSACLG00000011462	chst12a (ENSACLG00000011184)	CARD11 (ENSACLG00000011082) #35	ap5z1 (ENSACLG00000011021) #32	MMD2 (ENSACLG00000010994) #29	wipi2 (ENSACLG00000010922) #28	smurf1 (ENSACLG00000010783)	RNF216 (ENSACLG00000010729) #22	FSCN1 (ENSACLG00000010718) #23	ENSACLG00000010698 ##24	ENSACLG00000010670 #26	ENSACLG00000010643 #26	slc29a4a (ENSACLG00000010394) #27	atp5mf (ENSACLG00000010386)	cpsf4 (ENSACLG00000010374)	shmt1 (ENSACLG00000010356)	pdap1b (ENSACLG00000010346)	bud31 (ENSACLG00000010341)	ENSACLG00000010337	ENSACLG00000010334	USP7 (ENSACLG00000010306)	ENSACLG00000010297	dctn5 (ENSACLG00000010288)
Lyretail cichlid	MODERN SPECIES	344	atf4b (ENSNBRG00000005230)	ENSNBRG00000005223	ENSNBRG00000005190	mief1 (ENSNBRG00000005168)	ENSNBRG00000005158	ENSNBRG00000005143	mpst (ENSNBRG00000005135)	ENSNBRG00000005091	C1QTNF6 (ENSNBRG00000005077)	chst12a (ENSNBRG00000005067)	CARD11 (ENSNBRG00000005011) #35	ap5z1 (ENSNBRG00000004932) #32	wipi2 (ENSNBRG00000004870) #28	efcab1 (ENSNBRG00000004841)	smurf1 (ENSNBRG00000004768)	RNF216 (ENSNBRG00000004728) #22	FSCN1 (ENSNBRG00000004704) #23	ENSNBRG00000004668 ##24	TNRC18 (ENSNBRG00000004122) #26	slc29a4a (ENSNBRG00000003983) #27	atp5mf (ENSNBRG00000003971)	cpsf4 (ENSNBRG00000003943)	shmt1 (ENSNBRG00000003899)	pdap1b (ENSNBRG00000003870)	bud31 (ENSNBRG00000003852)	TOB2 (ENSNBRG00000003831)	TEF (ENSNBRG00000003823)	ZC3H7B (ENSNBRG00000003771)	RANGAP1 (ENSNBRG00000003657)	rbx1 (ENSNBRG00000003645)	ENSNBRG00000003619
Midas cichlid	MODERN SPECIES	413	ENSACIG00000008260	mief1 (ENSACIG00000008280)	ENSACIG00000008291	ENSACIG00000008294	mpst (ENSACIG00000008307)	ENSACIG00000008325	ENSACIG00000008341	ENSACIG00000008365	chst12a (ENSACIG00000008378)	CARD11 (ENSACIG00000008397) #35	ap5z1 (ENSACIG00000008455) #32	mmd2a (ENSACIG00000008496) #29	wipi2 (ENSACIG00000008526) #28	ENSACIG00000008555	smurf1 (ENSACIG00000008901)	RNF216 (ENSACIG00000008944) #22	FSCN1 (ENSACIG00000008970) #23	ENSACIG00000008980 ##24	TNRC18 (ENSACIG00000008998) #26	slc29a4a (ENSACIG00000009092) #27	atp5mf (ENSACIG00000009170)	cpsf4 (ENSACIG00000009248)	shmt1 (ENSACIG00000009271)	pdap1b (ENSACIG00000009293)	bud31 (ENSACIG00000009314)	ENSACIG00000009326	TOB2 (ENSACIG00000009336)	tefb (ENSACIG00000009347)	ZC3H7B (ENSACIG00000009388)	rangap1a (ENSACIG00000009654)	ENSACIG00000009692
Pomacentridae	ANCESTRAL SPECIES	31										ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Bicolor damselfish	MODERN SPECIES	1013									ENSSPAG00000021404	CBX1 (ENSSPAG00000021360)	nfe2l1a (ENSSPAG00000021340)	praf2 (ENSSPAG00000021332)	copz2 (ENSSPAG00000021283)	prr15la (ENSSPAG00000021260)	smurf1 (ENSSPAG00000021197)	ENSSPAG00000021173 #22
Pomacentridae_A	ANCESTRAL SPECIES	21									ENSGT00940000166554.b	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347
Spiny chromis	MODERN SPECIES	803												MMD2 (ENSAPOG00000004480) #29	wipi2 (ENSAPOG00000004535) #28	ENSAPOG00000004645	smurf1 (ENSAPOG00000004687)	ENSAPOG00000004727 #22	FSCN1 (ENSAPOG00000004744) #23	ENSAPOG00000004765 ##24	ENSAPOG00000004811 #26	slc29a4a (ENSAPOG00000004839) #27	ENSAPOG00000004853	atp5mf (ENSAPOG00000004869)	cpsf4 (ENSAPOG00000004921)
Amphiprion	ANCESTRAL SPECIES	25									ENSGT00940000166554.b	ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.b.e.a ##24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000158365.f.b	ENSGT00940000155497.a.a	ENSGT00940000153657.A	ENSGT00390000001347.i
Orange clownfish	MODERN SPECIES	5	RRN3 (ENSAPEG00000010199)	ENSAPEG00000010224	gspt1l (ENSAPEG00000010261)	pdxdc1 (ENSAPEG00000010315)	slc25a23b (ENSAPEG00000010405)	gps1 (ENSAPEG00000010453)	JUP (ENSAPEG00000010556)	rbfox1 (ENSAPEG00000010636)	ENSAPEG00000010808	chst12a (ENSAPEG00000010815)	CARD11 (ENSAPEG00000010836) #35	ap5z1 (ENSAPEG00000010932) #32	mmd2a (ENSAPEG00000010952) #29	wipi2 (ENSAPEG00000010987) #28	smurf1 (ENSAPEG00000011048)	ENSAPEG00000011134 #22	FSCN1 (ENSAPEG00000011161) #23	ENSAPEG00000011197 ##24	ENSAPEG00000011224 #26	slc29a4a (ENSAPEG00000011458) #27	ENSAPEG00000011492	ENSAPEG00000011507	xpnpep3 (ENSAPEG00000011557)	st13 (ENSAPEG00000011577)	SLC29A4 (ENSAPEG00000011616) #27	ENSAPEG00000011672	atp5mf (ENSAPEG00000011712)	cpsf4 (ENSAPEG00000011679)	shmt1 (ENSAPEG00000011740)	pdap1b (ENSAPEG00000011801)	bud31 (ENSAPEG00000011830)
Clown anemonefish	MODERN SPECIES	2658												ap5z1 (ENSAOCG00000022570) #32	MMD2 (ENSAOCG00000022620) #29	wipi2 (ENSAOCG00000022646) #28	smurf1 (ENSAOCG00000022700)	ENSAOCG00000022765 #22	ENSAOCG00000022796	stmn4 (ENSAOCG00000022816)	emilin1a (ENSAOCG00000022834)
Tiger tail seahorse	MODERN SPECIES	262	ENSHCOG00000006846	ENSHCOG00000006853	mief1 (ENSHCOG00000006873)	ENSHCOG00000006884	mpst (ENSHCOG00000006897)	mpst (ENSHCOG00000006906)	ENSHCOG00000006919	ENSHCOG00000006940	ENSHCOG00000000207	chst12a (ENSHCOG00000006968)	CARD11 (ENSHCOG00000007033) #35	ap5z1 (ENSHCOG00000007072) #32	mmd2a (ENSHCOG00000007105) #29	wipi2 (ENSHCOG00000007134) #28	smurf1 (ENSHCOG00000007183)	ENSHCOG00000007204 #22	FSCN1 (ENSHCOG00000007218) #23	ENSHCOG00000007233 ##24	ENSHCOG00000007252 ##24	TNRC18 (ENSHCOG00000000247) #26
Cod	MODERN SPECIES	67										ENSGMOG00000035011 #28	ENSGMOG00000018144	ENSGMOG00000028931	ENSGMOG00000025832	ENSGMOG00000028434	ENSGMOG00000029135	ENSGMOG00000032413 #22
Protacanthopterygii	ANCESTRAL SPECIES	154										ENSGT00940000156614.b	ENSGT00940000158573 #35	ENSGT00390000017592 #32	ENSGT00940000157972.c.c #29	ENSGT00940000155537 #28	ENSGT00940000158690	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000018509.a	ENSGT00390000014300	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643.f	ENSGT00940000156643.e	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.c.b
Salmoninae	ANCESTRAL SPECIES	415																ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00940000157099 #26	ENSGT00950000182898.a.b #27	ENSGT00390000014300	ENSGT00940000165557	ENSGT00940000155520	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643.f	ENSGT00940000156643.e	ENSGT00950000182906.a.a.a	ENSGT00930000151032.A.c.b	ENSGT00940000155335.s.b
Salmoninae_a	ANCESTRAL SPECIES	115	ENSGT00940000158180	ENSGT00390000002127	ENSGT00390000015360.c	ENSGT00940000165827	ENSGT00940000156666.m.a	ENSGT00940000160079	ENSGT00940000157239.h.a.a	ENSGT00940000156254.o.b	ENSGT00940000157932.m.a	ENSGT00950000182803.A.a.a.c.a.a.a	ENSGT00940000158025.a.a.b.i	ENSGT00940000157022	ENSGT00530000064157.b	ENSGT01060000248954	ENSGT00510000048339	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00950000182960.a.a.b.f.b ##24	ENSGT00940000157099.o #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557.l	ENSGT00940000155520.yb	ENSGT00940000165557.m.a	ENSGT00940000155520.xb.a	ENSGT00390000014300	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643.e	ENSGT00950000182906.a.a.a
Salmo	ANCESTRAL SPECIES	277												ENSGT00940000158025.a.a.b.i	ENSGT00940000157022	ENSGT01060000248954.d	ENSGT00510000048339	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24
Atlantic salmon	DUPLICATION
Atlantic salmon	MODERN SPECIES	75																ENSSSAG00000011634 #22	ENSSSAG00000095028 #23
Atlantic salmon	MODERN SPECIES	22	ENSSSAG00000082297	ENSSSAG00000103553	ENSSSAG00000092671	ENSSSAG00000112857	ENSSSAG00000086461	ENSSSAG00000112557	ACPM (ENSSSAG00000092661)	ENSSSAG00000104216	ENSSSAG00000098504	ENSSSAG00000104173	ENSSSAG00000119943	ENSSSAG00000114814	ENSSSAG00000108000	ENSSSAG00000061614	ENSSSAG00000087505	RNF216 (ENSSSAG00000112468) #22	ENSSSAG00000086226 #23	ACTB (ENSSSAG00000116649) #24	ENSSSAG00000120146 #27	ENSSSAG00000108467	ENSSSAG00000121341	ENSSSAG00000081819	ENSSSAG00000101116	ENSSSAG00000109260	ENSSSAG00000066902	ENSSSAG00000082623	ENSSSAG00000090142	ENSSSAG00000084822	ENSSSAG00000082588	ENSSSAG00000086189	ENSSSAG00000090232
Oncorhynchus	ANCESTRAL SPECIES	82	ENSGT00940000158180	ENSGT00390000002127	ENSGT00390000015360.c.c	ENSGT00940000165827	ENSGT00940000156666.m.a	ENSGT00940000160079	ENSGT00940000157239.h.a.a	ENSGT00940000156254.o.b	ENSGT00940000157932.m.a	ENSGT00950000182803.A.a.a.c.a.a.a	ENSGT00940000158025.a.a.b.i	ENSGT00940000157022	ENSGT00530000064157.b.j	ENSGT01060000248954.e.a	ENSGT00510000048339	ENSGT00510000048032 #22	ENSGT00950000183157.a.a.b.c #23	ENSGT00950000182960.a.a.a.a #24	ENSGT00950000182960.a.a.b.f.b ##24	ENSGT00940000157099.o #26	ENSGT00950000182898.a.b #27	ENSGT00940000165557.m.a	ENSGT00940000155520.xb.a	ENSGT00390000014300.k	ENSGT00390000002762.a.b.f.a	ENSGT00390000014300.l	ENSGT00390000002762.a.b.f.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00940000156643.e.d	ENSGT00940000156643.e.c
Rainbow trout	MODERN SPECIES	81													ENSOMYG00000056593	ENSOMYG00000061238	ENSOMYG00000035428	RNF216 (ENSOMYG00000065108) #22	ENSOMYG00000070742 #23	ACTB (ENSOMYG00000076844) #24	ENSOMYG00000051193 #26	slc29a4a (ENSOMYG00000072420) #27	atp5mf (ENSOMYG00000059843)	ENSOMYG00000069179	cpsf4 (ENSOMYG00000060344)	ENSOMYG00000037117	shmt1 (ENSOMYG00000061025)	smcr8a (ENSOMYG00000071328)	TOP3A (ENSOMYG00000056459)	flii (ENSOMYG00000057018)	ENSOMYG00000065959	LLGL1 (ENSOMYG00000071339)	MYO15A (ENSOMYG00000073405)
Northern pike	MODERN SPECIES	10	ENSELUG00000014186	GRIN2A (ENSELUG00000014230)	ENSELUG00000032196	ENSELUG00000014282	ENSELUG00000014292	rpusd1 (ENSELUG00000014307)	gng13b (ENSELUG00000014327)	traf7 (ENSELUG00000014361)	CASKIN1 (ENSELUG00000001621)	prpsap2 (ENSELUG00000014534)	ENSELUG00000014556	grapa (ENSELUG00000029918)	EPN2 (ENSELUG00000011145)	b9d1 (ENSELUG00000011213)	ENSELUG00000001600	RNF216 (ENSELUG00000011346) #22	FSCN1 (ENSELUG00000011363) #23	ACTB (ENSELUG00000011375) #24	ENSELUG00000011437	slc29a4a (ENSELUG00000011467) #27	atp5mf (ENSELUG00000011473)	cpsf4 (ENSELUG00000011481)	pdap1b (ENSELUG00000011601)	bud31 (ENSELUG00000011629)	ENSELUG00000011716	ENSELUG00000011657	flii (ENSELUG00000011761)	TOP3A (ENSELUG00000011817)	smcr8a (ENSELUG00000011865)	shmt1 (ENSELUG00000011924)	ENSELUG00000011939
Spotted gar	MODERN SPECIES	651	SDK1 (ENSLOCG00000004340) #34	ENSLOCG00000004367	ENSLOCG00000004392	ENSLOCG00000004405	ap5z1 (ENSLOCG00000004430) #32	radil (ENSLOCG00000004464) #30	mmd2a (ENSLOCG00000004492) #29	wipi2 (ENSLOCG00000004511) #28	arpc1b (ENSLOCG00000004536)	arpc1a (ENSLOCG00000004549)	ENSLOCG00000004563	kpna7 (ENSLOCG00000004619)	smurf1 (ENSLOCG00000004637)	ENSLOCG00000018102	ENSLOCG00000018103	RNF216 (ENSLOCG00000004666) #22	fscn1a (ENSLOCG00000004693) #23	actb1 (ENSLOCG00000004713) ##24	fbxl18 (ENSLOCG00000004725) #25	TNRC18 (ENSLOCG00000004756) #26	slc29a4a (ENSLOCG00000004787) #27	atp5mf (ENSLOCG00000004800)	cpsf4 (ENSLOCG00000004814)	PTCD1 (ENSLOCG00000004833)	bud31 (ENSLOCG00000004858)	pdap1b (ENSLOCG00000004873)	shmt1 (ENSLOCG00000004890)	ENSLOCG00000004911	smcr8a (ENSLOCG00000004927)	TOP3A (ENSLOCG00000004935)	flii (ENSLOCG00000004957)
Reedfish	MODERN SPECIES	2	si:ch211-157c3.4 (ENSECRG00000018814)	USP7 (ENSECRG00000018912)	hapstr1a (ENSECRG00000019279)	GRIN2A (ENSECRG00000019325)	ENSECRG00000019398	emp2 (ENSECRG00000019432)	mmd2a (ENSECRG00000019461) #29	wipi2 (ENSECRG00000019499) #28	arpc1b (ENSECRG00000019549)	arpc1a (ENSECRG00000019611)	ENSECRG00000019674	kpna7 (ENSECRG00000019755)	smurf1 (ENSECRG00000019815)	ENSECRG00000019928	ENSECRG00000019969	RNF216 (ENSECRG00000020006) #22	FSCN1 (ENSECRG00000020051) #23	ACTB (ENSECRG00000011262) #24	fbxl18 (ENSECRG00000011307) #25	ENSECRG00000011335 #26	slc29a4a (ENSECRG00000011361) #27	atp5mf (ENSECRG00000011385)	cpsf4 (ENSECRG00000011433)	PTCD1 (ENSECRG00000011515)	bud31 (ENSECRG00000011536)	pdap1b (ENSECRG00000011558)	shmt1 (ENSECRG00000011583)	smcr8a (ENSECRG00000011612)	TOP3A (ENSECRG00000011633)	MIEF2 (ENSECRG00000011655)	flii (ENSECRG00000011687)
Elephant shark	MODERN SPECIES	1639						radil (ENSCMIG00000018329) #30	ENSCMIG00000018328 #29	wipi2 (ENSCMIG00000018316) #28	arpc1b (ENSCMIG00000018310)	arpc1a (ENSCMIG00000018301)	ENSCMIG00000018292	smurf1 (ENSCMIG00000018269)	ENSCMIG00000018097	kpna7 (ENSCMIG00000018017)	ENSCMIG00000017845	ENSCMIG00000017741 #22	fscn1a (ENSCMIG00000017739) #23	fbxl18 (ENSCMIG00000017737) #25	TNRC18 (ENSCMIG00000017724) #26	ENSCMIG00000017715	slc29a4a (ENSCMIG00000017711) #27	ENSCMIG00000017710	cpsf4 (ENSCMIG00000017708)	PTCD1 (ENSCMIG00000017705)	prkrip1 (ENSCMIG00000017699)	bud31 (ENSCMIG00000017693)	ENSCMIG00000017687	gng13b (ENSCMIG00000017685)	ENSCMIG00000017681	chtf18 (ENSCMIG00000017631)	rpusd1 (ENSCMIG00000017602)