Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Glires	ANCESTRAL SPECIES	17	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Lagomorpha	ANCESTRAL SPECIES	67	ENSGT00390000013178 #7	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00390000004511.d.a.b #26	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37	ENSGT01050000244866.A.a.a.a.a
Rabbit	MODERN SPECIES	15	AP5S1 (ENSOCUG00000011213) #7	ENSOCUG00000013659 #8	ENSOCUG00000036420 #9	SPEF1 (ENSOCUG00000003498) #10	ENSOCUG00000012726 #11	HSPA12B (ENSOCUG00000012719) #12	SIGLEC1 (ENSOCUG00000012702) #13	ADAM33 (ENSOCUG00000012683) #14	ENSOCUG00000012675 #15	ATRN (ENSOCUG00000012655) #16	DNAAF9 (ENSOCUG00000025410) #17	SLC4A11 (ENSOCUG00000004077) #18	ITPA (ENSOCUG00000004070) #19	DDRGK1 (ENSOCUG00000012618) #20	LZTS3 (ENSOCUG00000004066) #21	UBOX5 (ENSOCUG00000026346) #22	ENSOCUG00000008352 #23	MRPS26 (ENSOCUG00000012218) #24	ENSOCUG00000032897 #25	ENSOCUG00000001769 #26	PTPRA (ENSOCUG00000021376) #27	VPS16 (ENSOCUG00000012371) #28	PCED1A (ENSOCUG00000014939) #29	ENSOCUG00000007314 #30	CPXM1 (ENSOCUG00000006186) #31	EBF4 (ENSOCUG00000023917) #32	IDH3B (ENSOCUG00000024051) #33	NOP56 (ENSOCUG00000014960) #34	TMC2 (ENSOCUG00000014078) #35	ENSOCUG00000006902 #36	ENSOCUG00000014042 #37
Pika	MODERN SPECIES	1172											DNAAF9 (ENSOPRG00000015087) #17	SLC4A11 (ENSOPRG00000015043) #18	ITPA (ENSOPRG00000015022) #19	DDRGK1 (ENSOPRG00000015004) #20	LZTS3 (ENSOPRG00000014988) #21	UBOX5 (ENSOPRG00000018916) #22	AVP (ENSOPRG00000014980) #26	ENSOPRG00000014962 #23	ENSOPRG00000014944	PTPRA (ENSOPRG00000018434) #27
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Kangaroo rat	MODERN SPECIES	332	Cdc25b (ENSDORG00000003852) #8	Cenpb (ENSDORG00000003851) #9	Spef1 (ENSDORG00000003850) #10	1700037H04Rik (ENSDORG00000026291) #11	Hspa12b (ENSDORG00000003847) #12	Siglec1 (ENSDORG00000005848) #13	Adam33 (ENSDORG00000005845) #14	ENSDORG00000005842 #15	Atrn (ENSDORG00000005836) #16	ENSDORG00000027146	Dnaaf9 (ENSDORG00000005703) #17	Slc4a11 (ENSDORG00000016220) #18	Itpa (ENSDORG00000016219) #19	Ddrgk1 (ENSDORG00000025128) #20	Lzts3 (ENSDORG00000023886) #21	Ubox5 (ENSDORG00000023223) #22	Fastkd5 (ENSDORG00000029181)	Avp (ENSDORG00000026916) #26	Oxt (ENSDORG00000024438) #23	Mrps26 (ENSDORG00000012900) #24	Ptpra (ENSDORG00000012895) #27	Vps16 (ENSDORG00000023158) #28	Pced1a (ENSDORG00000027465) #29	Tmem239 (ENSDORG00000001749) #30	1700020A23Rik (ENSDORG00000027106)	Cpxm1 (ENSDORG00000003235) #31	Ebf4 (ENSDORG00000004139) #32	Idh3b (ENSDORG00000013913) #33	ENSDORG00000024850 #34	ENSDORG00000013918 #34	Tmc2 (ENSDORG00000013570) #35
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.b ##23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.b.b ##37
Chinese hamster chok1gshd	MODERN SPECIES	188	Cenpb (ENSCGRG00001019077) #9	Spef1 (ENSCGRG00001021469) #10	1700037H04Rik (ENSCGRG00001010201) #11	Hspa12b (ENSCGRG00001009631) #12	Siglec1 (ENSCGRG00001022404) #13	Adam33 (ENSCGRG00001019850) #14	Gfra4 (ENSCGRG00001024505) #15	Atrn (ENSCGRG00001022711) #16	ENSCGRG00001014567	Dnaaf9 (ENSCGRG00001017760) #17	Slc4a11 (ENSCGRG00001005371) #18	ITPA (ENSCGRG00001009380) #19	Ddrgk1 (ENSCGRG00001010910) #20	Lzts3 (ENSCGRG00001007812) #21	Fastkd5 (ENSCGRG00001021453)	Ubox5 (ENSCGRG00001022453) #22	Avp (ENSCGRG00001009090) #26	ENSCGRG00001008948 ##23	ENSCGRG00001009214	Mrps26 (ENSCGRG00001018911) #24	Ptpra (ENSCGRG00001014995) #27	Vps16 (ENSCGRG00001017458) #28	Pced1a (ENSCGRG00001019937) #29	Tmem239 (ENSCGRG00001001392) #30	1700020A23Rik (ENSCGRG00001021320)	Cpxm1 (ENSCGRG00001014283) #31	Ebf4 (ENSCGRG00001017309) #32	Idh3b (ENSCGRG00001012059) #33	Nop56 (ENSCGRG00001019528) #34	Tmc2 (ENSCGRG00001012157) #35	ENSCGRG00001019697
Golden Hamster	MODERN SPECIES	631	Spef1 (ENSMAUG00000020367) #10	ENSMAUG00000006345 #11	Hspa12b (ENSMAUG00000015233) #12	Siglec1 (ENSMAUG00000002470) #13	Adam33 (ENSMAUG00000018073) #14	Gfra4 (ENSMAUG00000021968) #15	Atrn (ENSMAUG00000012223) #16	ENSMAUG00000008969	ENSMAUG00000008516	ENSMAUG00000014651	Slc4a11 (ENSMAUG00000021645) #18	Itpa (ENSMAUG00000021384) #19	Ddrgk1 (ENSMAUG00000022014) #20	Lzts3 (ENSMAUG00000021395) #21	Fastkd5 (ENSMAUG00000020637)	Ubox5 (ENSMAUG00000019757) #22	ENSMAUG00000021401 #26	Mrps26 (ENSMAUG00000019571) #24	Ptpra (ENSMAUG00000022109) #27	Vps16 (ENSMAUG00000010001) #28	ENSMAUG00000021075 #29	ENSMAUG00000022047	Cpxm1 (ENSMAUG00000020338) #31	Ebf4 (ENSMAUG00000006779) #32	Idh3b (ENSMAUG00000020105) #33	Nop56 (ENSMAUG00000021793) #34	Tmc2 (ENSMAUG00000006671) #35	ENSMAUG00000020656 ##37	ENSMAUG00000007538	Tgm6 (ENSMAUG00000021585)	Tgm3 (ENSMAUG00000018002)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37	ENSGT01050000244866.A.a.a.a.a
Northern American deer mouse	MODERN SPECIES	17	Cenpb (ENSPEMG00000005445) #9	Spef1 (ENSPEMG00000002306) #10	1700037H04Rik (ENSPEMG00000018470) #11	Hspa12b (ENSPEMG00000019282) #12	ENSPEMG00000018674	Siglec1 (ENSPEMG00000002568) #13	Adam33 (ENSPEMG00000016937) #14	ENSPEMG00000012584	Atrn (ENSPEMG00000006119) #16	Dnaaf9 (ENSPEMG00000011552) #17	Slc4a11 (ENSPEMG00000017984) #18	ENSPEMG00000014788 #19	Ddrgk1 (ENSPEMG00000009063) #20	Lzts3 (ENSPEMG00000013505) #21	Fastkd5 (ENSPEMG00000017742)	Ubox5 (ENSPEMG00000018299) #22	Avp (ENSPEMG00000003752) #26	Oxt (ENSPEMG00000009490) #23	Mrps26 (ENSPEMG00000010334) #24	Ptpra (ENSPEMG00000001508) #27	ENSPEMG00000026020	Vps16 (ENSPEMG00000013167) #28	Pced1a (ENSPEMG00000014207) #29	Tmem239 (ENSPEMG00000010668) #30	1700020A23Rik (ENSPEMG00000025056)	Cpxm1 (ENSPEMG00000001942) #31	Ebf4 (ENSPEMG00000007345) #32	Idh3b (ENSPEMG00000016045) #33	ENSPEMG00000030460	Tmc2 (ENSPEMG00000014826) #35	Snrpb (ENSPEMG00000007948) #37
Prairie vole	MODERN SPECIES	86	Spef1 (ENSMOCG00000016870) #10	1700037H04Rik (ENSMOCG00000002686) #11	Hspa12b (ENSMOCG00000020638) #12	Siglec1 (ENSMOCG00000013504) #13	Adam33 (ENSMOCG00000022885) #14	Gfra4 (ENSMOCG00000020802) #15	Atrn (ENSMOCG00000000501) #16	ENSMOCG00000001889	ENSMOCG00000015477	Dnaaf9 (ENSMOCG00000018106) #17	Slc4a11 (ENSMOCG00000016721) #18	ENSMOCG00000011173 #19	Ddrgk1 (ENSMOCG00000017173) #20	Lzts3 (ENSMOCG00000019922) #21	Fastkd5 (ENSMOCG00000018299)	Ubox5 (ENSMOCG00000021078) #22	Avp (ENSMOCG00000014821) #26	Oxt (ENSMOCG00000017703) #23	MRPS26 (ENSMOCG00000016053) #24	Ptpra (ENSMOCG00000013827) #27	Vps16 (ENSMOCG00000010998) #28	ENSMOCG00000011698 #29	Tmem239 (ENSMOCG00000000098) #30	1700020A23Rik (ENSMOCG00000002438)	Cpxm1 (ENSMOCG00000005470) #31	Ebf4 (ENSMOCG00000011784) #32	Idh3b (ENSMOCG00000009379) #33	ENSMOCG00000018981 #34	ENSMOCG00000004225 #34	Tmc2 (ENSMOCG00000015150) #35	ENSMOCG00000002892 #37
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Mus	ANCESTRAL SPECIES	1	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Mouse	MODERN SPECIES	11	Cdc25b (ENSMUSG00000027330) #8	Cenpb (ENSMUSG00000068267) #9	Spef1 (ENSMUSG00000027329) #10	1700037H04Rik (ENSMUSG00000027327) #11	Hspa12b (ENSMUSG00000074793) #12	Siglec1 (ENSMUSG00000027322) #13	Adam33 (ENSMUSG00000027318) #14	Gfra4 (ENSMUSG00000027316) #15	Atrn (ENSMUSG00000027312) #16	Dnaaf9 (ENSMUSG00000027309) #17	Slc4a11 (ENSMUSG00000074796) #18	Itpa (ENSMUSG00000074797) #19	Ddrgk1 (ENSMUSG00000068290) #20	Lzts3 (ENSMUSG00000037703) #21	Fastkd5 (ENSMUSG00000079043)	Ubox5 (ENSMUSG00000027300) #22	Avp (ENSMUSG00000037727) #26	Oxt (ENSMUSG00000027301) #23	Mrps26 (ENSMUSG00000037740) #24	Ptpra (ENSMUSG00000027303) #27	Vps16 (ENSMUSG00000027411) #28	Pced1a (ENSMUSG00000037773) #29	Tmem239 (ENSMUSG00000049692) #30	1700020A23Rik (ENSMUSG00000027409)	Cpxm1 (ENSMUSG00000027408) #31	Ebf4 (ENSMUSG00000053552) #32	Idh3b (ENSMUSG00000027406) #33	Nop56 (ENSMUSG00000027405) #34	Tmc2 (ENSMUSG00000060332) #35	Snrpb (ENSMUSG00000027404) #37	Tgm6 (ENSMUSG00000027403)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158524 #8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
spretus	MODERN SPECIES	11	Cdc25b (MGP_SPRETEiJ_G0025244) #8	Cenpb (MGP_SPRETEiJ_G0025243) #9	Spef1 (MGP_SPRETEiJ_G0025242) #10	1700037H04Rik (MGP_SPRETEiJ_G0025241) #11	MGP_SPRETEiJ_G0025240	Hspa12b (MGP_SPRETEiJ_G0025239) #12	Siglec1 (MGP_SPRETEiJ_G0025238) #13	Adam33 (MGP_SPRETEiJ_G0025237) #14	Gfra4 (MGP_SPRETEiJ_G0025236) #15	Atrn (MGP_SPRETEiJ_G0025235) #16	Slc4a11 (MGP_SPRETEiJ_G0025233) #18	Itpa (MGP_SPRETEiJ_G0025232) #19	Ddrgk1 (MGP_SPRETEiJ_G0025231) #20	Lzts3 (MGP_SPRETEiJ_G0025230) #21	Fastkd5 (MGP_SPRETEiJ_G0025229)	Ubox5 (MGP_SPRETEiJ_G0025228) #22	Avp (MGP_SPRETEiJ_G0025227) #26	Oxt (MGP_SPRETEiJ_G0025226) #23	Mrps26 (MGP_SPRETEiJ_G0025225) #24	Ptpra (MGP_SPRETEiJ_G0025224) #27	Vps16 (MGP_SPRETEiJ_G0025223) #28	Pced1a (MGP_SPRETEiJ_G0025222) #29	Tmem239 (MGP_SPRETEiJ_G0025221) #30	1700020A23Rik (MGP_SPRETEiJ_G0025220)	MGP_SPRETEiJ_G0025219	Cpxm1 (MGP_SPRETEiJ_G0025218) #31	Ebf4 (MGP_SPRETEiJ_G0025217) #32	Idh3b (MGP_SPRETEiJ_G0025216) #33	Nop56 (MGP_SPRETEiJ_G0025215) #34	Tmc2 (MGP_SPRETEiJ_G0025214) #35	Snrpb (MGP_SPRETEiJ_G0025213) #37
Steppe mouse	MODERN SPECIES	3100	1700037H04Rik (ENSMSIG00000014310) #11	Hspa12b (ENSMSIG00000014280) #12	Siglec1 (ENSMSIG00000014173) #13	Adam33 (ENSMSIG00000014090) #14	Gfra4 (ENSMSIG00000014050) #15	Atrn (ENSMSIG00000014020) #16	ENSMSIG00000014004	ENSMSIG00000013992	ENSMSIG00000013972	Dnaaf9 (ENSMSIG00000013648) #17	Slc4a11 (ENSMSIG00000013565) #18	ENSMSIG00000013514 #19	Ddrgk1 (ENSMSIG00000013480) #20	Lzts3 (ENSMSIG00000013473) #21	ENSMSIG00000013450	Ubox5 (ENSMSIG00000013436) #22	Avp (ENSMSIG00000013423) #26	Oxt (ENSMSIG00000013416) #23	Mrps26 (ENSMSIG00000013383) #24	ENSMSIG00000013369	Ptpra (ENSMSIG00000013175) #27	Vps16 (ENSMSIG00000013066) #28	Tmem239 (ENSMSIG00000013056) #30	1700020A23Rik (ENSMSIG00000013042)	Cpxm1 (ENSMSIG00000012969) #31	Ebf4 (ENSMSIG00000012856) #32	ENSMSIG00000012850	Idh3b (ENSMSIG00000012771) #33	Nop56 (ENSMSIG00000012714) #34	Tmc2 (ENSMSIG00000012652) #35	Snrpb (ENSMSIG00000012633) #37
Ryukyu mouse	MODERN SPECIES	11	Cenpb (MGP_CAROLIEiJ_G0024323) #9	Spef1 (MGP_CAROLIEiJ_G0024322) #10	1700037H04Rik (MGP_CAROLIEiJ_G0024321) #11	MGP_CAROLIEiJ_G0024320	Hspa12b (MGP_CAROLIEiJ_G0024319) #12	Siglec1 (MGP_CAROLIEiJ_G0024318) #13	Adam33 (MGP_CAROLIEiJ_G0024317) #14	Gfra4 (MGP_CAROLIEiJ_G0024316) #15	Atrn (MGP_CAROLIEiJ_G0024315) #16	Dnaaf9 (MGP_CAROLIEiJ_G0024314) #17	Slc4a11 (MGP_CAROLIEiJ_G0024313) #18	Itpa (MGP_CAROLIEiJ_G0024312) #19	Ddrgk1 (MGP_CAROLIEiJ_G0024311) #20	Lzts3 (MGP_CAROLIEiJ_G0024310) #21	Fastkd5 (MGP_CAROLIEiJ_G0024309)	Ubox5 (MGP_CAROLIEiJ_G0024308) #22	Avp (MGP_CAROLIEiJ_G0024307) #26	Oxt (MGP_CAROLIEiJ_G0024306) #23	Mrps26 (MGP_CAROLIEiJ_G0024305) #24	Ptpra (MGP_CAROLIEiJ_G0024304) #27	Vps16 (MGP_CAROLIEiJ_G0024303) #28	Pced1a (MGP_CAROLIEiJ_G0024302) #29	Tmem239 (MGP_CAROLIEiJ_G0024301) #30	1700020A23Rik (MGP_CAROLIEiJ_G0024300)	MGP_CAROLIEiJ_G0024299	Cpxm1 (MGP_CAROLIEiJ_G0024298) #31	Ebf4 (MGP_CAROLIEiJ_G0024297) #32	Idh3b (MGP_CAROLIEiJ_G0024296) #33	Nop56 (MGP_CAROLIEiJ_G0024295) #34	Tmc2 (MGP_CAROLIEiJ_G0024294) #35	Snrpb (MGP_CAROLIEiJ_G0024293) #37
Rat	MODERN SPECIES	13	Cenpb (ENSRNOG00000057284) #9	RGD1311739 (ENSRNOG00000021245) #11	Hspa12b (ENSRNOG00000021244) #12	Siglec1 (ENSRNOG00000021243) #13	Adam33 (ENSRNOG00000021242) #14	Gfra4 (ENSRNOG00000021241) #15	Atrn (ENSRNOG00000021240) #16	ENSRNOG00000069383	ENSRNOG00000069867	Dnaaf9 (ENSRNOG00000021237) #17	Slc4a11 (ENSRNOG00000021234) #18	Itpa (ENSRNOG00000021233) #19	Ddrgk1 (ENSRNOG00000021232) #20	Lzts3 (ENSRNOG00000021231) #21	Fastkd5 (ENSRNOG00000053270)	Ubox5 (ENSRNOG00000021230) #22	Avp (ENSRNOG00000021229) #26	Oxt (ENSRNOG00000021225) #23	Mrps26 (ENSRNOG00000021224) #24	Ptpra (ENSRNOG00000021223) #27	Vps16 (ENSRNOG00000021222) #28	Pced1a (ENSRNOG00000021221) #29	Tmem239 (ENSRNOG00000047004) #30	Cpxm1 (ENSRNOG00000021220) #31	Ebf4 (ENSRNOG00000007408) #32	Rps12l3 (ENSRNOG00000033913)	AABR07053734.1 (ENSRNOG00000031034)	Idh3b (ENSRNOG00000007316) #33	Nop56 (ENSRNOG00000007128) #34	Tmc2 (ENSRNOG00000007017) #35	Snrpb (ENSRNOG00000006961) #37
Upper Galilee mountains blind mole rat	MODERN SPECIES	1686										ENSNGAG00000015989	Dnaaf9 (ENSNGAG00000005585) #17	Slc4a11 (ENSNGAG00000018270) #18	Itpa (ENSNGAG00000016121) #19	Ddrgk1 (ENSNGAG00000000119) #20	Lzts3 (ENSNGAG00000018130) #21	Ubox5 (ENSNGAG00000020965) #22	Avp (ENSNGAG00000007700) #26	Oxt (ENSNGAG00000010896) #23	Mrps26 (ENSNGAG00000013778) #24	Ptpra (ENSNGAG00000015467) #27	Vps16 (ENSNGAG00000019525) #28	Pced1a (ENSNGAG00000001267) #29	Tmem239 (ENSNGAG00000014119) #30	Cpxm1 (ENSNGAG00000020071) #31	Ebf4 (ENSNGAG00000010179) #32	Idh3b (ENSNGAG00000016651) #33	ENSNGAG00000019819 #34	ENSNGAG00000020493 #34	Tmc2 (ENSNGAG00000020836) #35	ENSNGAG00000014327	ENSNGAG00000015321
Lesser Egyptian jerboa	MODERN SPECIES	84	Ap5s1 (ENSJJAG00000011042) #7	ENSJJAG00000014354 #8	Cenpb (ENSJJAG00000002178) #9	Spef1 (ENSJJAG00000020535) #10	ENSJJAG00000014233 #11	Hspa12b (ENSJJAG00000006200) #12	Siglec1 (ENSJJAG00000004155) #13	Adam33 (ENSJJAG00000018028) #14	Gfra4 (ENSJJAG00000023836) #15	Atrn (ENSJJAG00000013554) #16	Dnaaf9 (ENSJJAG00000010931) #17	Slc4a11 (ENSJJAG00000023904) #18	Itpa (ENSJJAG00000019256) #19	Fastkd5 (ENSJJAG00000018838)	ENSJJAG00000016818	Ubox5 (ENSJJAG00000005580) #22	Avp (ENSJJAG00000024270) #26	Oxt (ENSJJAG00000023461) #23	Mrps26 (ENSJJAG00000021092) #24	Ptpra (ENSJJAG00000015717) #27	Tmem239 (ENSJJAG00000020111) #30	Cpxm1 (ENSJJAG00000003720) #31	Ebf4 (ENSJJAG00000022459) #32	Tmc2 (ENSJJAG00000009946) #35	Snrpb (ENSJJAG00000024170) #37	Tgm6 (ENSJJAG00000012854)	Tgm3 (ENSJJAG00000018372)	ENSJJAG00000004224
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000157346.b #16	ENSGT00940000160491 #15	ENSGT00940000157346.a #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a.b #23	ENSGT00390000004511.d.a.a.a.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000157346.b #16	ENSGT00940000160491 #15	ENSGT00940000157346.a #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a.a.a.a.b #23	ENSGT00390000004511.d.a.a.b #23	ENSGT00390000004511.d.a.a.a.a.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34
Marmotini_b	ANCESTRAL SPECIES	18	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000157346.b #16	ENSGT00940000160491 #15	ENSGT00940000157346.a #16	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a.a.a.a.b #23	ENSGT00390000004511.d.a.a.b #23	ENSGT00390000004511.d.a.a.a.a.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00910000144368	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34
Arctic ground squirrel	MODERN SPECIES	435								GFRA4 (ENSUPAG00010023441) #15	ATRN (ENSUPAG00010023403) #16	DNAAF9 (ENSUPAG00010023402) #17	SLC4A11 (ENSUPAG00010023401) #18	ITPA (ENSUPAG00010023400) #19	DDRGK1 (ENSUPAG00010023399) #20	LZTS3 (ENSUPAG00010023398) #21	FASTKD5 (ENSUPAG00010023397)	UBOX5 (ENSUPAG00010023396) #22	AVP (ENSUPAG00010023395) #26	ENSUPAG00010023394 #23	ENSUPAG00010023393	ENSUPAG00010023392 #23	ENSUPAG00010023391 #23	MRPS26 (ENSUPAG00010023390) #24	GNRH2 (ENSUPAG00010023389)	PTPRA (ENSUPAG00010023388) #27	VPS16 (ENSUPAG00010023387) #28	PCED1A (ENSUPAG00010023386) #29	TMEM239 (ENSUPAG00010023385) #30	C20orf141 (ENSUPAG00010023384)	CPXM1 (ENSUPAG00010023383) #31	EBF4 (ENSUPAG00010023382) #32	IDH3B (ENSUPAG00010023381) #33
Squirrel	MODERN SPECIES	85	ENSSTOG00000024587 #8	CENPB (ENSSTOG00000024375) #9	SPEF1 (ENSSTOG00000006040) #10	ADISSP (ENSSTOG00000006026) #11	HSPA12B (ENSSTOG00000006000) #12	SIGLEC1 (ENSSTOG00000007494) #13	ADAM33 (ENSSTOG00000012414) #14	ENSSTOG00000024663 #16	GFRA4 (ENSSTOG00000032183) #15	ENSSTOG00000000760 #16	DNAAF9 (ENSSTOG00000006511) #17	SLC4A11 (ENSSTOG00000006469) #18	ITPA (ENSSTOG00000021471) #19	DDRGK1 (ENSSTOG00000006435) #20	LZTS3 (ENSSTOG00000006427) #21	UBOX5 (ENSSTOG00000019785) #22	AVP (ENSSTOG00000023202) #26	ENSSTOG00000023996 #23	ENSSTOG00000026916	ENSSTOG00000015044 #23	ENSSTOG00000030242	MRPS26 (ENSSTOG00000026786) #24	PTPRA (ENSSTOG00000023551) #27	VPS16 (ENSSTOG00000016357) #28	PCED1A (ENSSTOG00000016356) #29	TMEM239 (ENSSTOG00000024083) #30	ENSSTOG00000023115	CPXM1 (ENSSTOG00000016354) #31	EBF4 (ENSSTOG00000016352) #32	IDH3B (ENSSTOG00000012515) #33	NOP56 (ENSSTOG00000012503) #34
Alpin marmot	MODERN SPECIES		CENPB (ENSMMMG00000023947) #9	SPEF1 (ENSMMMG00000023946) #10	ADISSP (ENSMMMG00000023945) #11	HSPA12B (ENSMMMG00000023943) #12	SIGLEC1 (ENSMMMG00000023929) #13	ADAM33 (ENSMMMG00000023924) #14	GFRA4 (ENSMMMG00000023923) #15	ATRN (ENSMMMG00000023922) #16	ENSMMMG00000023921	DNAAF9 (ENSMMMG00000023920) #17	SLC4A11 (ENSMMMG00000023919) #18	ITPA (ENSMMMG00000023918) #19	DDRGK1 (ENSMMMG00000023917) #20	LZTS3 (ENSMMMG00000023916) #21	FASTKD5 (ENSMMMG00000023915)	UBOX5 (ENSMMMG00000023914) #22	ENSMMMG00000023913 #23	AVP (ENSMMMG00000023912) #26	ENSMMMG00000023911 #23	ENSMMMG00000023908 #23	MRPS26 (ENSMMMG00000023906) #24	GNRH2 (ENSMMMG00000023905)	PTPRA (ENSMMMG00000023904) #27	ENSMMMG00000023903	VPS16 (ENSMMMG00000023902) #28	PCED1A (ENSMMMG00000023901) #29	TMEM239 (ENSMMMG00000023900) #30	C20orf141 (ENSMMMG00000023899)	CPXM1 (ENSMMMG00000023898) #31	EBF4 (ENSMMMG00000023897) #32	IDH3B (ENSMMMG00000023896) #33
Eurasian red squirrel	MODERN SPECIES	11	CENPB (ENSSVLG00005007124) #9	SPEF1 (ENSSVLG00005007146) #10	ADISSP (ENSSVLG00005007194) #11	HSPA12B (ENSSVLG00005007213) #12	SIGLEC1 (ENSSVLG00005007295) #13	ENSSVLG00005007386 #14	ENSSVLG00005007424 #16	GFRA4 (ENSSVLG00005007530) #15	ENSSVLG00005007589 #16	DNAAF9 (ENSSVLG00005007901) #17	ENSSVLG00005007979	SLC4A11 (ENSSVLG00005008082) #18	ITPA (ENSSVLG00005008517) #19	DDRGK1 (ENSSVLG00005008587) #20	LZTS3 (ENSSVLG00005008683) #21	UBOX5 (ENSSVLG00005008732) #22	AVP (ENSSVLG00005008767) #26	ENSSVLG00005008791 #23	ENSSVLG00005008834	ENSSVLG00005008884 #23	ENSSVLG00005008922 #23	ENSSVLG00005008985 #23	MRPS26 (ENSSVLG00005009025) #24	GNRH2 (ENSSVLG00005009052)	PTPRA (ENSSVLG00005009119) #27	VPS16 (ENSSVLG00005009245) #28	PCED1A (ENSSVLG00005009512) #29	TMEM239 (ENSSVLG00005009555) #30	C20orf141 (ENSSVLG00005009574)	CPXM1 (ENSSVLG00005009609) #31	EBF4 (ENSSVLG00005009723) #32
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00390000005119	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37	ENSGT01050000244866.A.a.a.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000162810 #9	ENSGT00910000144159.A.a #10	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971 #14	ENSGT00940000160491 #15	ENSGT00940000157346 #16	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #26	ENSGT00390000004511.d.a.a #23	ENSGT00390000008453 #24	ENSGT00940000159585 #27	ENSGT00390000003896 #28	ENSGT00390000002231.c #29	ENSGT00390000005090 #30	ENSGT00940000165014	ENSGT00940000156141.C #31	ENSGT00950000182859.A.a.a.a #32	ENSGT00950000182989.D.a.b #33	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #37	ENSGT01050000244866.A.a.a.a.a
Long-tailed chinchilla	MODERN SPECIES	122	CENPB (ENSCLAG00000017935) #9	SPEF1 (ENSCLAG00000013471) #10	ADISSP (ENSCLAG00000013586) #11	HSPA12B (ENSCLAG00000011219) #12	SIGLEC1 (ENSCLAG00000013751) #13	ADAM33 (ENSCLAG00000011084) #14	ENSCLAG00000009584	ATRN (ENSCLAG00000010887) #16	ENSCLAG00000012573	DNAAF9 (ENSCLAG00000013491) #17	SLC4A11 (ENSCLAG00000012612) #18	ITPA (ENSCLAG00000012396) #19	DDRGK1 (ENSCLAG00000012959) #20	LZTS3 (ENSCLAG00000010167) #21	FASTKD5 (ENSCLAG00000017812)	UBOX5 (ENSCLAG00000012136) #22	MRPS26 (ENSCLAG00000011719) #24	PTPRA (ENSCLAG00000014599) #27	VPS16 (ENSCLAG00000010899) #28	PCED1A (ENSCLAG00000010239) #29	TMEM239 (ENSCLAG00000010005) #30	ENSCLAG00000009947	CPXM1 (ENSCLAG00000010049) #31	EBF4 (ENSCLAG00000016129) #32	IDH3B (ENSCLAG00000012613) #33	NOP56 (ENSCLAG00000013816) #34	TMC2 (ENSCLAG00000013446) #35	SNRPB (ENSCLAG00000012442) #37	TGM6 (ENSCLAG00000012346)	TGM3 (ENSCLAG00000010817)	STK35 (ENSCLAG00000010739)
Degu	MODERN SPECIES	101	SPEF1 (ENSODEG00000005543) #10	ADISSP (ENSODEG00000006785) #11	HSPA12B (ENSODEG00000006345) #12	SIGLEC1 (ENSODEG00000005702) #13	GFRA4 (ENSODEG00000006159) #15	ENSODEG00000005788	ATRN (ENSODEG00000004625) #16	ENSODEG00000005518	DNAAF9 (ENSODEG00000005205) #17	SLC4A11 (ENSODEG00000006000) #18	ITPA (ENSODEG00000005202) #19	DDRGK1 (ENSODEG00000005502) #20	LZTS3 (ENSODEG00000006348) #21	ENSODEG00000019287	FASTKD5 (ENSODEG00000005773)	UBOX5 (ENSODEG00000006821) #22	AVP (ENSODEG00000006589) #26	ENSODEG00000004605 #23	MRPS26 (ENSODEG00000004501) #24	PTPRA (ENSODEG00000005651) #27	VPS16 (ENSODEG00000004474) #28	PCED1A (ENSODEG00000005153) #29	ENSODEG00000004687	CPXM1 (ENSODEG00000005511) #31	EBF4 (ENSODEG00000005079) #32	IDH3B (ENSODEG00000006040) #33	ENSODEG00000005708 #34	ENSODEG00000005500 #34	TMC2 (ENSODEG00000004874) #35	ENSODEG00000004305 #37	TGM6 (ENSODEG00000008085)
Guinea pig	MODERN SPECIES	8	AP5S1 (ENSCPOG00000034150) #7	CDC25B (ENSCPOG00000007223) #8	CENPB (ENSCPOG00000007221) #9	SPEF1 (ENSCPOG00000035881) #10	ADISSP (ENSCPOG00000007216) #11	HSPA12B (ENSCPOG00000007213) #12	SIGLEC1 (ENSCPOG00000007205) #13	ADAM33 (ENSCPOG00000019634) #14	GFRA4 (ENSCPOG00000034307) #15	ATRN (ENSCPOG00000007193) #16	DNAAF9 (ENSCPOG00000038300) #17	SLC4A11 (ENSCPOG00000001277) #18	ITPA (ENSCPOG00000039557) #19	DDRGK1 (ENSCPOG00000001272) #20	LZTS3 (ENSCPOG00000034395) #21	UBOX5 (ENSCPOG00000020493) #22	FASTKD5 (ENSCPOG00000023356)	AVP (ENSCPOG00000023592) #26	ENSCPOG00000001717 #23	MRPS26 (ENSCPOG00000037912) #24	PTPRA (ENSCPOG00000020873) #27	VPS16 (ENSCPOG00000003602) #28	PCED1A (ENSCPOG00000025475) #29	CPXM1 (ENSCPOG00000011936) #31	EBF4 (ENSCPOG00000004862) #32	IDH3B (ENSCPOG00000015319) #33	NOP56 (ENSCPOG00000015315) #34	TMC2 (ENSCPOG00000015312) #35	SNRPB (ENSCPOG00000039408) #37	TGM6 (ENSCPOG00000015309)	TGM3 (ENSCPOG00000015307)