Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000160491 #11	ENSGT00940000157346 #13	ENSGT01100000266557 #14	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00940000165014 #29	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #36
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000160491 #11	ENSGT00940000157346 #13	ENSGT01100000266557 #14	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00940000165014 #29	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #36	ENSGT01050000244866.A.a.a.a.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000160491 #11	ENSGT00940000157346 #13	ENSGT01100000266557 #14	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00940000165014 #29	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #36	ENSGT01050000244866.A.a.a.a.a #37
Degu	MODERN SPECIES	101	SPEF1 (ENSODEG00000005543) #7	ADISSP (ENSODEG00000006785) #8	HSPA12B (ENSODEG00000006345) #9	SIGLEC1 (ENSODEG00000005702) #10	GFRA4 (ENSODEG00000006159) #11	ENSODEG00000005788 #12	ATRN (ENSODEG00000004625) #13	ENSODEG00000005518 #14	DNAAF9 (ENSODEG00000005205) #15	SLC4A11 (ENSODEG00000006000) #16	ITPA (ENSODEG00000005202) #17	DDRGK1 (ENSODEG00000005502) #18	LZTS3 (ENSODEG00000006348) #19	ENSODEG00000019287 #20	FASTKD5 (ENSODEG00000005773) #21	UBOX5 (ENSODEG00000006821) #22	AVP (ENSODEG00000006589) #23	ENSODEG00000004605 #24	MRPS26 (ENSODEG00000004501) #25	PTPRA (ENSODEG00000005651) #26	VPS16 (ENSODEG00000004474) #27	PCED1A (ENSODEG00000005153) #28	ENSODEG00000004687 #29	CPXM1 (ENSODEG00000005511) #30	EBF4 (ENSODEG00000005079) #31	IDH3B (ENSODEG00000006040) #32	ENSODEG00000005708 #33	ENSODEG00000005500 #34	TMC2 (ENSODEG00000004874) #35	ENSODEG00000004305 #36	TGM6 (ENSODEG00000008085) #37
Long-tailed chinchilla	MODERN SPECIES	122	CENPB (ENSCLAG00000017935)	SPEF1 (ENSCLAG00000013471) #7	ADISSP (ENSCLAG00000013586) #8	HSPA12B (ENSCLAG00000011219) #9	SIGLEC1 (ENSCLAG00000013751) #10	ADAM33 (ENSCLAG00000011084)	ENSCLAG00000009584	ATRN (ENSCLAG00000010887) #13	ENSCLAG00000012573	DNAAF9 (ENSCLAG00000013491) #15	SLC4A11 (ENSCLAG00000012612) #16	ITPA (ENSCLAG00000012396) #17	DDRGK1 (ENSCLAG00000012959) #18	LZTS3 (ENSCLAG00000010167) #19	FASTKD5 (ENSCLAG00000017812) #21	UBOX5 (ENSCLAG00000012136) #22	MRPS26 (ENSCLAG00000011719) #25	PTPRA (ENSCLAG00000014599) #26	VPS16 (ENSCLAG00000010899) #27	PCED1A (ENSCLAG00000010239) #28	TMEM239 (ENSCLAG00000010005)	ENSCLAG00000009947 #29	CPXM1 (ENSCLAG00000010049) #30	EBF4 (ENSCLAG00000016129) #31	IDH3B (ENSCLAG00000012613) #32	NOP56 (ENSCLAG00000013816) #33	TMC2 (ENSCLAG00000013446) #35	SNRPB (ENSCLAG00000012442) #36	TGM6 (ENSCLAG00000012346) #37	TGM3 (ENSCLAG00000010817) ##37	STK35 (ENSCLAG00000010739)
Guinea pig	MODERN SPECIES	8	AP5S1 (ENSCPOG00000034150)	CDC25B (ENSCPOG00000007223)	CENPB (ENSCPOG00000007221)	SPEF1 (ENSCPOG00000035881) #7	ADISSP (ENSCPOG00000007216) #8	HSPA12B (ENSCPOG00000007213) #9	SIGLEC1 (ENSCPOG00000007205) #10	ADAM33 (ENSCPOG00000019634)	GFRA4 (ENSCPOG00000034307) #11	ATRN (ENSCPOG00000007193) #13	DNAAF9 (ENSCPOG00000038300) #15	SLC4A11 (ENSCPOG00000001277) #16	ITPA (ENSCPOG00000039557) #17	DDRGK1 (ENSCPOG00000001272) #18	LZTS3 (ENSCPOG00000034395) #19	UBOX5 (ENSCPOG00000020493) #22	FASTKD5 (ENSCPOG00000023356) #21	AVP (ENSCPOG00000023592) #23	ENSCPOG00000001717 #24	MRPS26 (ENSCPOG00000037912) #25	PTPRA (ENSCPOG00000020873) #26	VPS16 (ENSCPOG00000003602) #27	PCED1A (ENSCPOG00000025475) #28	CPXM1 (ENSCPOG00000011936) #30	EBF4 (ENSCPOG00000004862) #31	IDH3B (ENSCPOG00000015319) #32	NOP56 (ENSCPOG00000015315) #33	TMC2 (ENSCPOG00000015312) #35	SNRPB (ENSCPOG00000039408) #36	TGM6 (ENSCPOG00000015309) #37	TGM3 (ENSCPOG00000015307) ##37