Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000160491 #11	ENSGT00940000157346 #13	ENSGT01100000266557 #14	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #36
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000160491 #11	ENSGT00940000157346 #13	ENSGT01100000266557 #14	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00940000165014 #29	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #36
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000160491 #11	ENSGT00940000157346 #13	ENSGT01100000266557 #14	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00940000165014 #29	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #36	ENSGT01050000244866.A.a.a.a.a #37
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000160491 #11	ENSGT00940000157346 #13	ENSGT01100000266557 #14	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00940000165014 #29	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a #36	ENSGT01050000244866.A.a.a.a.a #37
Degu	MODERN SPECIES	101	SPEF1 (ENSODEG00000005543) #7	ADISSP (ENSODEG00000006785) #8	HSPA12B (ENSODEG00000006345) #9	SIGLEC1 (ENSODEG00000005702) #10	GFRA4 (ENSODEG00000006159) #11	ENSODEG00000005788 #12	ATRN (ENSODEG00000004625) #13	ENSODEG00000005518 #14	DNAAF9 (ENSODEG00000005205) #15	SLC4A11 (ENSODEG00000006000) #16	ITPA (ENSODEG00000005202) #17	DDRGK1 (ENSODEG00000005502) #18	LZTS3 (ENSODEG00000006348) #19	ENSODEG00000019287 #20	FASTKD5 (ENSODEG00000005773) #21	UBOX5 (ENSODEG00000006821) #22	AVP (ENSODEG00000006589) #23	ENSODEG00000004605 #24	MRPS26 (ENSODEG00000004501) #25	PTPRA (ENSODEG00000005651) #26	VPS16 (ENSODEG00000004474) #27	PCED1A (ENSODEG00000005153) #28	ENSODEG00000004687 #29	CPXM1 (ENSODEG00000005511) #30	EBF4 (ENSODEG00000005079) #31	IDH3B (ENSODEG00000006040) #32	ENSODEG00000005708 #33	ENSODEG00000005500 #34	TMC2 (ENSODEG00000004874) #35	ENSODEG00000004305 #36	TGM6 (ENSODEG00000008085) #37
Long-tailed chinchilla	MODERN SPECIES	122	CENPB (ENSCLAG00000017935)	SPEF1 (ENSCLAG00000013471) #7	ADISSP (ENSCLAG00000013586) #8	HSPA12B (ENSCLAG00000011219) #9	SIGLEC1 (ENSCLAG00000013751) #10	ADAM33 (ENSCLAG00000011084)	ENSCLAG00000009584	ATRN (ENSCLAG00000010887) #13	ENSCLAG00000012573	DNAAF9 (ENSCLAG00000013491) #15	SLC4A11 (ENSCLAG00000012612) #16	ITPA (ENSCLAG00000012396) #17	DDRGK1 (ENSCLAG00000012959) #18	LZTS3 (ENSCLAG00000010167) #19	FASTKD5 (ENSCLAG00000017812) #21	UBOX5 (ENSCLAG00000012136) #22	MRPS26 (ENSCLAG00000011719) #25	PTPRA (ENSCLAG00000014599) #26	VPS16 (ENSCLAG00000010899) #27	PCED1A (ENSCLAG00000010239) #28	TMEM239 (ENSCLAG00000010005)	ENSCLAG00000009947 #29	CPXM1 (ENSCLAG00000010049) #30	EBF4 (ENSCLAG00000016129) #31	IDH3B (ENSCLAG00000012613) #32	NOP56 (ENSCLAG00000013816) #33	TMC2 (ENSCLAG00000013446) #35	SNRPB (ENSCLAG00000012442) #36	TGM6 (ENSCLAG00000012346) #37	TGM3 (ENSCLAG00000010817) ##37	STK35 (ENSCLAG00000010739)
Guinea pig	MODERN SPECIES	8	AP5S1 (ENSCPOG00000034150)	CDC25B (ENSCPOG00000007223)	CENPB (ENSCPOG00000007221)	SPEF1 (ENSCPOG00000035881) #7	ADISSP (ENSCPOG00000007216) #8	HSPA12B (ENSCPOG00000007213) #9	SIGLEC1 (ENSCPOG00000007205) #10	ADAM33 (ENSCPOG00000019634)	GFRA4 (ENSCPOG00000034307) #11	ATRN (ENSCPOG00000007193) #13	DNAAF9 (ENSCPOG00000038300) #15	SLC4A11 (ENSCPOG00000001277) #16	ITPA (ENSCPOG00000039557) #17	DDRGK1 (ENSCPOG00000001272) #18	LZTS3 (ENSCPOG00000034395) #19	UBOX5 (ENSCPOG00000020493) #22	FASTKD5 (ENSCPOG00000023356) #21	AVP (ENSCPOG00000023592) #23	ENSCPOG00000001717 #24	MRPS26 (ENSCPOG00000037912) #25	PTPRA (ENSCPOG00000020873) #26	VPS16 (ENSCPOG00000003602) #27	PCED1A (ENSCPOG00000025475) #28	CPXM1 (ENSCPOG00000011936) #30	EBF4 (ENSCPOG00000004862) #31	IDH3B (ENSCPOG00000015319) #32	NOP56 (ENSCPOG00000015315) #33	TMC2 (ENSCPOG00000015312) #35	SNRPB (ENSCPOG00000039408) #36	TGM6 (ENSCPOG00000015309) #37	TGM3 (ENSCPOG00000015307) ##37
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000157346.b #13	ENSGT00940000160491 #11	ENSGT00940000157346.a #13	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a.b #24	ENSGT00390000004511.d.a.a.a.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33	ENSGT01050000244942.b.a.b #35
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000157346.b #13	ENSGT00940000160491 #11	ENSGT00940000157346.a #13	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a.a.a.a.b #24	ENSGT00390000004511.d.a.a.b #24	ENSGT00390000004511.d.a.a.a.a.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33
Marmotini_b	ANCESTRAL SPECIES	18	ENSGT00940000162810	ENSGT00910000144159.A.a #7	ENSGT00390000008711 #8	ENSGT00940000159032 #9	ENSGT01100000263535.a.a #10	ENSGT00940000158971	ENSGT00940000157346.b #13	ENSGT00940000160491 #11	ENSGT00940000157346.a #13	ENSGT00390000003692 #15	ENSGT00940000154894 #16	ENSGT00390000015399 #17	ENSGT00390000017193 #18	ENSGT00940000154078.b #19	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a.a.a.a.b #24	ENSGT00390000004511.d.a.a.b #24	ENSGT00390000004511.d.a.a.a.a.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #33
Arctic ground squirrel	MODERN SPECIES	435								GFRA4 (ENSUPAG00010023441) #11	ATRN (ENSUPAG00010023403) #13	DNAAF9 (ENSUPAG00010023402) #15	SLC4A11 (ENSUPAG00010023401) #16	ITPA (ENSUPAG00010023400) #17	DDRGK1 (ENSUPAG00010023399) #18	LZTS3 (ENSUPAG00010023398) #19	FASTKD5 (ENSUPAG00010023397) #21	UBOX5 (ENSUPAG00010023396) #22	AVP (ENSUPAG00010023395) #23	ENSUPAG00010023394 #24	ENSUPAG00010023393	ENSUPAG00010023392 #24	ENSUPAG00010023391 #24	MRPS26 (ENSUPAG00010023390) #25	GNRH2 (ENSUPAG00010023389)	PTPRA (ENSUPAG00010023388) #26	VPS16 (ENSUPAG00010023387) #27	PCED1A (ENSUPAG00010023386) #28	TMEM239 (ENSUPAG00010023385)	C20orf141 (ENSUPAG00010023384)	CPXM1 (ENSUPAG00010023383) #30	EBF4 (ENSUPAG00010023382) #31	IDH3B (ENSUPAG00010023381) #32
Squirrel	MODERN SPECIES	85	ENSSTOG00000024587	CENPB (ENSSTOG00000024375)	SPEF1 (ENSSTOG00000006040) #7	ADISSP (ENSSTOG00000006026) #8	HSPA12B (ENSSTOG00000006000) #9	SIGLEC1 (ENSSTOG00000007494) #10	ADAM33 (ENSSTOG00000012414)	ENSSTOG00000024663 #13	GFRA4 (ENSSTOG00000032183) #11	ENSSTOG00000000760 #13	DNAAF9 (ENSSTOG00000006511) #15	SLC4A11 (ENSSTOG00000006469) #16	ITPA (ENSSTOG00000021471) #17	DDRGK1 (ENSSTOG00000006435) #18	LZTS3 (ENSSTOG00000006427) #19	UBOX5 (ENSSTOG00000019785) #22	AVP (ENSSTOG00000023202) #23	ENSSTOG00000023996 #24	ENSSTOG00000026916	ENSSTOG00000015044 #24	ENSSTOG00000030242	MRPS26 (ENSSTOG00000026786) #25	PTPRA (ENSSTOG00000023551) #26	VPS16 (ENSSTOG00000016357) #27	PCED1A (ENSSTOG00000016356) #28	TMEM239 (ENSSTOG00000024083)	ENSSTOG00000023115 #29	CPXM1 (ENSSTOG00000016354) #30	EBF4 (ENSSTOG00000016352) #31	IDH3B (ENSSTOG00000012515) #32	NOP56 (ENSSTOG00000012503) #33
Alpin marmot	MODERN SPECIES		CENPB (ENSMMMG00000023947)	SPEF1 (ENSMMMG00000023946) #7	ADISSP (ENSMMMG00000023945) #8	HSPA12B (ENSMMMG00000023943) #9	SIGLEC1 (ENSMMMG00000023929) #10	ADAM33 (ENSMMMG00000023924)	GFRA4 (ENSMMMG00000023923) #11	ATRN (ENSMMMG00000023922) #13	ENSMMMG00000023921	DNAAF9 (ENSMMMG00000023920) #15	SLC4A11 (ENSMMMG00000023919) #16	ITPA (ENSMMMG00000023918) #17	DDRGK1 (ENSMMMG00000023917) #18	LZTS3 (ENSMMMG00000023916) #19	FASTKD5 (ENSMMMG00000023915) #21	UBOX5 (ENSMMMG00000023914) #22	ENSMMMG00000023913 #24	AVP (ENSMMMG00000023912) #23	ENSMMMG00000023911 #24	ENSMMMG00000023908 #24	MRPS26 (ENSMMMG00000023906) #25	GNRH2 (ENSMMMG00000023905)	PTPRA (ENSMMMG00000023904) #26	ENSMMMG00000023903	VPS16 (ENSMMMG00000023902) #27	PCED1A (ENSMMMG00000023901) #28	TMEM239 (ENSMMMG00000023900)	C20orf141 (ENSMMMG00000023899)	CPXM1 (ENSMMMG00000023898) #30	EBF4 (ENSMMMG00000023897) #31	IDH3B (ENSMMMG00000023896) #32
Eurasian red squirrel	MODERN SPECIES	11	CENPB (ENSSVLG00005007124)	SPEF1 (ENSSVLG00005007146) #7	ADISSP (ENSSVLG00005007194) #8	HSPA12B (ENSSVLG00005007213) #9	SIGLEC1 (ENSSVLG00005007295) #10	ENSSVLG00005007386	ENSSVLG00005007424 #13	GFRA4 (ENSSVLG00005007530) #11	ENSSVLG00005007589 #13	DNAAF9 (ENSSVLG00005007901) #15	ENSSVLG00005007979	SLC4A11 (ENSSVLG00005008082) #16	ITPA (ENSSVLG00005008517) #17	DDRGK1 (ENSSVLG00005008587) #18	LZTS3 (ENSSVLG00005008683) #19	UBOX5 (ENSSVLG00005008732) #22	AVP (ENSSVLG00005008767) #23	ENSSVLG00005008791 #24	ENSSVLG00005008834	ENSSVLG00005008884 #24	ENSSVLG00005008922 #24	ENSSVLG00005008985 #24	MRPS26 (ENSSVLG00005009025) #25	GNRH2 (ENSSVLG00005009052)	PTPRA (ENSSVLG00005009119) #26	VPS16 (ENSSVLG00005009245) #27	PCED1A (ENSSVLG00005009512) #28	TMEM239 (ENSSVLG00005009555)	C20orf141 (ENSSVLG00005009574)	CPXM1 (ENSSVLG00005009609) #30	EBF4 (ENSSVLG00005009723) #31