Euarchontoglires_A	ANCESTRAL SPECIES	16	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Glires	ANCESTRAL SPECIES	17	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Rodentia	ANCESTRAL SPECIES	18	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Rodentia_B	ANCESTRAL SPECIES	13	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Myomorpha	ANCESTRAL SPECIES	9	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Muroidea	ANCESTRAL SPECIES	7	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Upper Galilee mountains blind mole rat	MODERN SPECIES	1686										ENSNGAG00000015989 #16	Dnaaf9 (ENSNGAG00000005585) #17	Slc4a11 (ENSNGAG00000018270) #18	Itpa (ENSNGAG00000016121) #19	Ddrgk1 (ENSNGAG00000000119) #20	Lzts3 (ENSNGAG00000018130) #21	Ubox5 (ENSNGAG00000020965) #22	Avp (ENSNGAG00000007700) #23	Oxt (ENSNGAG00000010896) #24	Mrps26 (ENSNGAG00000013778) #25	Ptpra (ENSNGAG00000015467) #26	Vps16 (ENSNGAG00000019525) #27	Pced1a (ENSNGAG00000001267) #28	Tmem239 (ENSNGAG00000014119) #29	Cpxm1 (ENSNGAG00000020071) #30	Ebf4 (ENSNGAG00000010179) #31	Idh3b (ENSNGAG00000016651) #32	ENSNGAG00000019819 #33	ENSNGAG00000020493 #34	Tmc2 (ENSNGAG00000020836) #35	ENSNGAG00000014327 #36	ENSNGAG00000015321 #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Cricetidae	ANCESTRAL SPECIES	5	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.b ##24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.b.b
Chinese hamster chok1gshd	MODERN SPECIES	188	Cenpb (ENSCGRG00001019077)	Spef1 (ENSCGRG00001021469)	1700037H04Rik (ENSCGRG00001010201)	Hspa12b (ENSCGRG00001009631)	Siglec1 (ENSCGRG00001022404)	Adam33 (ENSCGRG00001019850)	Gfra4 (ENSCGRG00001024505)	Atrn (ENSCGRG00001022711)	ENSCGRG00001014567	Dnaaf9 (ENSCGRG00001017760) #17	Slc4a11 (ENSCGRG00001005371) #18	ITPA (ENSCGRG00001009380) #19	Ddrgk1 (ENSCGRG00001010910) #20	Lzts3 (ENSCGRG00001007812) #21	Fastkd5 (ENSCGRG00001021453)	Ubox5 (ENSCGRG00001022453) #22	Avp (ENSCGRG00001009090) #23	ENSCGRG00001008948 ##24	ENSCGRG00001009214	Mrps26 (ENSCGRG00001018911) #25	Ptpra (ENSCGRG00001014995) #26	Vps16 (ENSCGRG00001017458) #27	Pced1a (ENSCGRG00001019937) #28	Tmem239 (ENSCGRG00001001392) #29	1700020A23Rik (ENSCGRG00001021320)	Cpxm1 (ENSCGRG00001014283) #30	Ebf4 (ENSCGRG00001017309) #31	Idh3b (ENSCGRG00001012059) #32	Nop56 (ENSCGRG00001019528) #34	Tmc2 (ENSCGRG00001012157) #35	ENSCGRG00001019697
Golden Hamster	MODERN SPECIES	631	Spef1 (ENSMAUG00000020367)	ENSMAUG00000006345	Hspa12b (ENSMAUG00000015233)	Siglec1 (ENSMAUG00000002470)	Adam33 (ENSMAUG00000018073)	Gfra4 (ENSMAUG00000021968)	Atrn (ENSMAUG00000012223)	ENSMAUG00000008969	ENSMAUG00000008516 #16	ENSMAUG00000014651	Slc4a11 (ENSMAUG00000021645) #18	Itpa (ENSMAUG00000021384) #19	Ddrgk1 (ENSMAUG00000022014) #20	Lzts3 (ENSMAUG00000021395) #21	Fastkd5 (ENSMAUG00000020637)	Ubox5 (ENSMAUG00000019757) #22	ENSMAUG00000021401 #23	Mrps26 (ENSMAUG00000019571) #25	Ptpra (ENSMAUG00000022109) #26	Vps16 (ENSMAUG00000010001) #27	ENSMAUG00000021075 #28	ENSMAUG00000022047	Cpxm1 (ENSMAUG00000020338) #30	Ebf4 (ENSMAUG00000006779) #31	Idh3b (ENSMAUG00000020105) #32	Nop56 (ENSMAUG00000021793) #34	Tmc2 (ENSMAUG00000006671) #35	ENSMAUG00000020656	ENSMAUG00000007538	Tgm6 (ENSMAUG00000021585)	Tgm3 (ENSMAUG00000018002)
Cricetidae_B	ANCESTRAL SPECIES	4	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a	ENSGT01050000244866.A.a.a.a.a
Northern American deer mouse	MODERN SPECIES	17	Cenpb (ENSPEMG00000005445)	Spef1 (ENSPEMG00000002306)	1700037H04Rik (ENSPEMG00000018470)	Hspa12b (ENSPEMG00000019282)	ENSPEMG00000018674	Siglec1 (ENSPEMG00000002568)	Adam33 (ENSPEMG00000016937)	ENSPEMG00000012584	Atrn (ENSPEMG00000006119)	Dnaaf9 (ENSPEMG00000011552) #17	Slc4a11 (ENSPEMG00000017984) #18	ENSPEMG00000014788 #19	Ddrgk1 (ENSPEMG00000009063) #20	Lzts3 (ENSPEMG00000013505) #21	Fastkd5 (ENSPEMG00000017742)	Ubox5 (ENSPEMG00000018299) #22	Avp (ENSPEMG00000003752) #23	Oxt (ENSPEMG00000009490) #24	Mrps26 (ENSPEMG00000010334) #25	Ptpra (ENSPEMG00000001508) #26	ENSPEMG00000026020	Vps16 (ENSPEMG00000013167) #27	Pced1a (ENSPEMG00000014207) #28	Tmem239 (ENSPEMG00000010668) #29	1700020A23Rik (ENSPEMG00000025056)	Cpxm1 (ENSPEMG00000001942) #30	Ebf4 (ENSPEMG00000007345) #31	Idh3b (ENSPEMG00000016045) #32	ENSPEMG00000030460	Tmc2 (ENSPEMG00000014826) #35	Snrpb (ENSPEMG00000007948)
Prairie vole	MODERN SPECIES	86	Spef1 (ENSMOCG00000016870)	1700037H04Rik (ENSMOCG00000002686)	Hspa12b (ENSMOCG00000020638)	Siglec1 (ENSMOCG00000013504)	Adam33 (ENSMOCG00000022885)	Gfra4 (ENSMOCG00000020802)	Atrn (ENSMOCG00000000501)	ENSMOCG00000001889	ENSMOCG00000015477 #16	Dnaaf9 (ENSMOCG00000018106) #17	Slc4a11 (ENSMOCG00000016721) #18	ENSMOCG00000011173 #19	Ddrgk1 (ENSMOCG00000017173) #20	Lzts3 (ENSMOCG00000019922) #21	Fastkd5 (ENSMOCG00000018299)	Ubox5 (ENSMOCG00000021078) #22	Avp (ENSMOCG00000014821) #23	Oxt (ENSMOCG00000017703) #24	MRPS26 (ENSMOCG00000016053) #25	Ptpra (ENSMOCG00000013827) #26	Vps16 (ENSMOCG00000010998) #27	ENSMOCG00000011698 #28	Tmem239 (ENSMOCG00000000098) #29	1700020A23Rik (ENSMOCG00000002438)	Cpxm1 (ENSMOCG00000005470) #30	Ebf4 (ENSMOCG00000011784) #31	Idh3b (ENSMOCG00000009379) #32	ENSMOCG00000018981 #34	ENSMOCG00000004225 #34	Tmc2 (ENSMOCG00000015150) #35	ENSMOCG00000002892
Murinae	ANCESTRAL SPECIES	1	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Mus	ANCESTRAL SPECIES	1	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Mus_A	ANCESTRAL SPECIES		ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Mouse	MODERN SPECIES	11	Cdc25b (ENSMUSG00000027330)	Cenpb (ENSMUSG00000068267)	Spef1 (ENSMUSG00000027329)	1700037H04Rik (ENSMUSG00000027327)	Hspa12b (ENSMUSG00000074793)	Siglec1 (ENSMUSG00000027322)	Adam33 (ENSMUSG00000027318)	Gfra4 (ENSMUSG00000027316)	Atrn (ENSMUSG00000027312)	Dnaaf9 (ENSMUSG00000027309) #17	Slc4a11 (ENSMUSG00000074796) #18	Itpa (ENSMUSG00000074797) #19	Ddrgk1 (ENSMUSG00000068290) #20	Lzts3 (ENSMUSG00000037703) #21	Fastkd5 (ENSMUSG00000079043)	Ubox5 (ENSMUSG00000027300) #22	Avp (ENSMUSG00000037727) #23	Oxt (ENSMUSG00000027301) #24	Mrps26 (ENSMUSG00000037740) #25	Ptpra (ENSMUSG00000027303) #26	Vps16 (ENSMUSG00000027411) #27	Pced1a (ENSMUSG00000037773) #28	Tmem239 (ENSMUSG00000049692) #29	1700020A23Rik (ENSMUSG00000027409)	Cpxm1 (ENSMUSG00000027408) #30	Ebf4 (ENSMUSG00000053552) #31	Idh3b (ENSMUSG00000027406) #32	Nop56 (ENSMUSG00000027405) #34	Tmc2 (ENSMUSG00000060332) #35	Snrpb (ENSMUSG00000027404)	Tgm6 (ENSMUSG00000027403)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
spretus	MODERN SPECIES	11	Cdc25b (MGP_SPRETEiJ_G0025244)	Cenpb (MGP_SPRETEiJ_G0025243)	Spef1 (MGP_SPRETEiJ_G0025242)	1700037H04Rik (MGP_SPRETEiJ_G0025241)	MGP_SPRETEiJ_G0025240	Hspa12b (MGP_SPRETEiJ_G0025239)	Siglec1 (MGP_SPRETEiJ_G0025238)	Adam33 (MGP_SPRETEiJ_G0025237)	Gfra4 (MGP_SPRETEiJ_G0025236)	Atrn (MGP_SPRETEiJ_G0025235)	Slc4a11 (MGP_SPRETEiJ_G0025233) #18	Itpa (MGP_SPRETEiJ_G0025232) #19	Ddrgk1 (MGP_SPRETEiJ_G0025231) #20	Lzts3 (MGP_SPRETEiJ_G0025230) #21	Fastkd5 (MGP_SPRETEiJ_G0025229)	Ubox5 (MGP_SPRETEiJ_G0025228) #22	Avp (MGP_SPRETEiJ_G0025227) #23	Oxt (MGP_SPRETEiJ_G0025226) #24	Mrps26 (MGP_SPRETEiJ_G0025225) #25	Ptpra (MGP_SPRETEiJ_G0025224) #26	Vps16 (MGP_SPRETEiJ_G0025223) #27	Pced1a (MGP_SPRETEiJ_G0025222) #28	Tmem239 (MGP_SPRETEiJ_G0025221) #29	1700020A23Rik (MGP_SPRETEiJ_G0025220)	MGP_SPRETEiJ_G0025219	Cpxm1 (MGP_SPRETEiJ_G0025218) #30	Ebf4 (MGP_SPRETEiJ_G0025217) #31	Idh3b (MGP_SPRETEiJ_G0025216) #32	Nop56 (MGP_SPRETEiJ_G0025215) #34	Tmc2 (MGP_SPRETEiJ_G0025214) #35	Snrpb (MGP_SPRETEiJ_G0025213)
Steppe mouse	MODERN SPECIES	3100	1700037H04Rik (ENSMSIG00000014310)	Hspa12b (ENSMSIG00000014280)	Siglec1 (ENSMSIG00000014173)	Adam33 (ENSMSIG00000014090)	Gfra4 (ENSMSIG00000014050)	Atrn (ENSMSIG00000014020)	ENSMSIG00000014004	ENSMSIG00000013992	ENSMSIG00000013972	Dnaaf9 (ENSMSIG00000013648) #17	Slc4a11 (ENSMSIG00000013565) #18	ENSMSIG00000013514 #19	Ddrgk1 (ENSMSIG00000013480) #20	Lzts3 (ENSMSIG00000013473) #21	ENSMSIG00000013450	Ubox5 (ENSMSIG00000013436) #22	Avp (ENSMSIG00000013423) #23	Oxt (ENSMSIG00000013416) #24	Mrps26 (ENSMSIG00000013383) #25	ENSMSIG00000013369	Ptpra (ENSMSIG00000013175) #26	Vps16 (ENSMSIG00000013066) #27	Tmem239 (ENSMSIG00000013056) #29	1700020A23Rik (ENSMSIG00000013042)	Cpxm1 (ENSMSIG00000012969) #30	Ebf4 (ENSMSIG00000012856) #31	ENSMSIG00000012850	Idh3b (ENSMSIG00000012771) #32	Nop56 (ENSMSIG00000012714) #34	Tmc2 (ENSMSIG00000012652) #35	Snrpb (ENSMSIG00000012633)
Ryukyu mouse	MODERN SPECIES	11	Cenpb (MGP_CAROLIEiJ_G0024323)	Spef1 (MGP_CAROLIEiJ_G0024322)	1700037H04Rik (MGP_CAROLIEiJ_G0024321)	MGP_CAROLIEiJ_G0024320	Hspa12b (MGP_CAROLIEiJ_G0024319)	Siglec1 (MGP_CAROLIEiJ_G0024318)	Adam33 (MGP_CAROLIEiJ_G0024317)	Gfra4 (MGP_CAROLIEiJ_G0024316)	Atrn (MGP_CAROLIEiJ_G0024315)	Dnaaf9 (MGP_CAROLIEiJ_G0024314) #17	Slc4a11 (MGP_CAROLIEiJ_G0024313) #18	Itpa (MGP_CAROLIEiJ_G0024312) #19	Ddrgk1 (MGP_CAROLIEiJ_G0024311) #20	Lzts3 (MGP_CAROLIEiJ_G0024310) #21	Fastkd5 (MGP_CAROLIEiJ_G0024309)	Ubox5 (MGP_CAROLIEiJ_G0024308) #22	Avp (MGP_CAROLIEiJ_G0024307) #23	Oxt (MGP_CAROLIEiJ_G0024306) #24	Mrps26 (MGP_CAROLIEiJ_G0024305) #25	Ptpra (MGP_CAROLIEiJ_G0024304) #26	Vps16 (MGP_CAROLIEiJ_G0024303) #27	Pced1a (MGP_CAROLIEiJ_G0024302) #28	Tmem239 (MGP_CAROLIEiJ_G0024301) #29	1700020A23Rik (MGP_CAROLIEiJ_G0024300)	MGP_CAROLIEiJ_G0024299	Cpxm1 (MGP_CAROLIEiJ_G0024298) #30	Ebf4 (MGP_CAROLIEiJ_G0024297) #31	Idh3b (MGP_CAROLIEiJ_G0024296) #32	Nop56 (MGP_CAROLIEiJ_G0024295) #34	Tmc2 (MGP_CAROLIEiJ_G0024294) #35	Snrpb (MGP_CAROLIEiJ_G0024293)
Rat	MODERN SPECIES	13	Cenpb (ENSRNOG00000057284)	RGD1311739 (ENSRNOG00000021245)	Hspa12b (ENSRNOG00000021244)	Siglec1 (ENSRNOG00000021243)	Adam33 (ENSRNOG00000021242)	Gfra4 (ENSRNOG00000021241)	Atrn (ENSRNOG00000021240)	ENSRNOG00000069383	ENSRNOG00000069867	Dnaaf9 (ENSRNOG00000021237) #17	Slc4a11 (ENSRNOG00000021234) #18	Itpa (ENSRNOG00000021233) #19	Ddrgk1 (ENSRNOG00000021232) #20	Lzts3 (ENSRNOG00000021231) #21	Fastkd5 (ENSRNOG00000053270)	Ubox5 (ENSRNOG00000021230) #22	Avp (ENSRNOG00000021229) #23	Oxt (ENSRNOG00000021225) #24	Mrps26 (ENSRNOG00000021224) #25	Ptpra (ENSRNOG00000021223) #26	Vps16 (ENSRNOG00000021222) #27	Pced1a (ENSRNOG00000021221) #28	Tmem239 (ENSRNOG00000047004) #29	Cpxm1 (ENSRNOG00000021220) #30	Ebf4 (ENSRNOG00000007408) #31	Rps12l3 (ENSRNOG00000033913)	AABR07053734.1 (ENSRNOG00000031034)	Idh3b (ENSRNOG00000007316) #32	Nop56 (ENSRNOG00000007128) #34	Tmc2 (ENSRNOG00000007017) #35	Snrpb (ENSRNOG00000006961)
Lesser Egyptian jerboa	MODERN SPECIES	84	Ap5s1 (ENSJJAG00000011042)	ENSJJAG00000014354	Cenpb (ENSJJAG00000002178)	Spef1 (ENSJJAG00000020535)	ENSJJAG00000014233	Hspa12b (ENSJJAG00000006200)	Siglec1 (ENSJJAG00000004155)	Adam33 (ENSJJAG00000018028)	Gfra4 (ENSJJAG00000023836)	Atrn (ENSJJAG00000013554)	Dnaaf9 (ENSJJAG00000010931) #17	Slc4a11 (ENSJJAG00000023904) #18	Itpa (ENSJJAG00000019256) #19	Fastkd5 (ENSJJAG00000018838)	ENSJJAG00000016818	Ubox5 (ENSJJAG00000005580) #22	Avp (ENSJJAG00000024270) #23	Oxt (ENSJJAG00000023461) #24	Mrps26 (ENSJJAG00000021092) #25	Ptpra (ENSJJAG00000015717) #26	Tmem239 (ENSJJAG00000020111) #29	Cpxm1 (ENSJJAG00000003720) #30	Ebf4 (ENSJJAG00000022459) #31	Tmc2 (ENSJJAG00000009946) #35	Snrpb (ENSJJAG00000024170)	Tgm6 (ENSJJAG00000012854)	Tgm3 (ENSJJAG00000018372)	ENSJJAG00000004224
Kangaroo rat	MODERN SPECIES	332	Cdc25b (ENSDORG00000003852)	Cenpb (ENSDORG00000003851)	Spef1 (ENSDORG00000003850)	1700037H04Rik (ENSDORG00000026291)	Hspa12b (ENSDORG00000003847)	Siglec1 (ENSDORG00000005848)	Adam33 (ENSDORG00000005845)	ENSDORG00000005842	Atrn (ENSDORG00000005836)	ENSDORG00000027146	Dnaaf9 (ENSDORG00000005703) #17	Slc4a11 (ENSDORG00000016220) #18	Itpa (ENSDORG00000016219) #19	Ddrgk1 (ENSDORG00000025128) #20	Lzts3 (ENSDORG00000023886) #21	Ubox5 (ENSDORG00000023223) #22	Fastkd5 (ENSDORG00000029181)	Avp (ENSDORG00000026916) #23	Oxt (ENSDORG00000024438) #24	Mrps26 (ENSDORG00000012900) #25	Ptpra (ENSDORG00000012895) #26	Vps16 (ENSDORG00000023158) #27	Pced1a (ENSDORG00000027465) #28	Tmem239 (ENSDORG00000001749) #29	1700020A23Rik (ENSDORG00000027106)	Cpxm1 (ENSDORG00000003235) #30	Ebf4 (ENSDORG00000004139) #31	Idh3b (ENSDORG00000013913) #32	ENSDORG00000024850 #34	ENSDORG00000013918 #34	Tmc2 (ENSDORG00000013570) #35
Rodentia_A	ANCESTRAL SPECIES	17	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Sciuridae	ANCESTRAL SPECIES	13	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000157346.b	ENSGT00940000160491	ENSGT00940000157346.a	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a.b #24	ENSGT00390000004511.d.a.a.a.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35
Marmotini	ANCESTRAL SPECIES	5	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000157346.b	ENSGT00940000160491	ENSGT00940000157346.a	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a.a.a.a.b #24	ENSGT00390000004511.d.a.a.b #24	ENSGT00390000004511.d.a.a.a.a.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34
Marmotini_b	ANCESTRAL SPECIES	18	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000157346.b	ENSGT00940000160491	ENSGT00940000157346.a	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a.a.a.a.b #24	ENSGT00390000004511.d.a.a.b #24	ENSGT00390000004511.d.a.a.a.a.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34
Arctic ground squirrel	MODERN SPECIES	435								GFRA4 (ENSUPAG00010023441)	ATRN (ENSUPAG00010023403)	DNAAF9 (ENSUPAG00010023402) #17	SLC4A11 (ENSUPAG00010023401) #18	ITPA (ENSUPAG00010023400) #19	DDRGK1 (ENSUPAG00010023399) #20	LZTS3 (ENSUPAG00010023398) #21	FASTKD5 (ENSUPAG00010023397)	UBOX5 (ENSUPAG00010023396) #22	AVP (ENSUPAG00010023395) #23	ENSUPAG00010023394 #24	ENSUPAG00010023393	ENSUPAG00010023392 #24	ENSUPAG00010023391 #24	MRPS26 (ENSUPAG00010023390) #25	GNRH2 (ENSUPAG00010023389)	PTPRA (ENSUPAG00010023388) #26	VPS16 (ENSUPAG00010023387) #27	PCED1A (ENSUPAG00010023386) #28	TMEM239 (ENSUPAG00010023385) #29	C20orf141 (ENSUPAG00010023384)	CPXM1 (ENSUPAG00010023383) #30	EBF4 (ENSUPAG00010023382) #31	IDH3B (ENSUPAG00010023381) #32
Squirrel	MODERN SPECIES	85	ENSSTOG00000024587	CENPB (ENSSTOG00000024375)	SPEF1 (ENSSTOG00000006040)	ADISSP (ENSSTOG00000006026)	HSPA12B (ENSSTOG00000006000)	SIGLEC1 (ENSSTOG00000007494)	ADAM33 (ENSSTOG00000012414)	ENSSTOG00000024663	GFRA4 (ENSSTOG00000032183)	ENSSTOG00000000760	DNAAF9 (ENSSTOG00000006511) #17	SLC4A11 (ENSSTOG00000006469) #18	ITPA (ENSSTOG00000021471) #19	DDRGK1 (ENSSTOG00000006435) #20	LZTS3 (ENSSTOG00000006427) #21	UBOX5 (ENSSTOG00000019785) #22	AVP (ENSSTOG00000023202) #23	ENSSTOG00000023996 #24	ENSSTOG00000026916	ENSSTOG00000015044 #24	ENSSTOG00000030242	MRPS26 (ENSSTOG00000026786) #25	PTPRA (ENSSTOG00000023551) #26	VPS16 (ENSSTOG00000016357) #27	PCED1A (ENSSTOG00000016356) #28	TMEM239 (ENSSTOG00000024083) #29	ENSSTOG00000023115	CPXM1 (ENSSTOG00000016354) #30	EBF4 (ENSSTOG00000016352) #31	IDH3B (ENSSTOG00000012515) #32	NOP56 (ENSSTOG00000012503) #34
Alpin marmot	MODERN SPECIES		CENPB (ENSMMMG00000023947)	SPEF1 (ENSMMMG00000023946)	ADISSP (ENSMMMG00000023945)	HSPA12B (ENSMMMG00000023943)	SIGLEC1 (ENSMMMG00000023929)	ADAM33 (ENSMMMG00000023924)	GFRA4 (ENSMMMG00000023923)	ATRN (ENSMMMG00000023922)	ENSMMMG00000023921	DNAAF9 (ENSMMMG00000023920) #17	SLC4A11 (ENSMMMG00000023919) #18	ITPA (ENSMMMG00000023918) #19	DDRGK1 (ENSMMMG00000023917) #20	LZTS3 (ENSMMMG00000023916) #21	FASTKD5 (ENSMMMG00000023915)	UBOX5 (ENSMMMG00000023914) #22	ENSMMMG00000023913 #24	AVP (ENSMMMG00000023912) #23	ENSMMMG00000023911 #24	ENSMMMG00000023908 #24	MRPS26 (ENSMMMG00000023906) #25	GNRH2 (ENSMMMG00000023905)	PTPRA (ENSMMMG00000023904) #26	ENSMMMG00000023903	VPS16 (ENSMMMG00000023902) #27	PCED1A (ENSMMMG00000023901) #28	TMEM239 (ENSMMMG00000023900) #29	C20orf141 (ENSMMMG00000023899)	CPXM1 (ENSMMMG00000023898) #30	EBF4 (ENSMMMG00000023897) #31	IDH3B (ENSMMMG00000023896) #32
Eurasian red squirrel	MODERN SPECIES	11	CENPB (ENSSVLG00005007124)	SPEF1 (ENSSVLG00005007146)	ADISSP (ENSSVLG00005007194)	HSPA12B (ENSSVLG00005007213)	SIGLEC1 (ENSSVLG00005007295)	ENSSVLG00005007386	ENSSVLG00005007424	GFRA4 (ENSSVLG00005007530)	ENSSVLG00005007589	DNAAF9 (ENSSVLG00005007901) #17	ENSSVLG00005007979	SLC4A11 (ENSSVLG00005008082) #18	ITPA (ENSSVLG00005008517) #19	DDRGK1 (ENSSVLG00005008587) #20	LZTS3 (ENSSVLG00005008683) #21	UBOX5 (ENSSVLG00005008732) #22	AVP (ENSSVLG00005008767) #23	ENSSVLG00005008791 #24	ENSSVLG00005008834	ENSSVLG00005008884 #24	ENSSVLG00005008922 #24	ENSSVLG00005008985 #24	MRPS26 (ENSSVLG00005009025) #25	GNRH2 (ENSSVLG00005009052)	PTPRA (ENSSVLG00005009119) #26	VPS16 (ENSSVLG00005009245) #27	PCED1A (ENSSVLG00005009512) #28	TMEM239 (ENSSVLG00005009555) #29	C20orf141 (ENSSVLG00005009574)	CPXM1 (ENSSVLG00005009609) #30	EBF4 (ENSSVLG00005009723) #31
Hystricomorpha	ANCESTRAL SPECIES	10	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a
Hystricomorpha_a	ANCESTRAL SPECIES	8	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a	ENSGT01050000244866.A.a.a.a.a
Hystricomorpha_b	ANCESTRAL SPECIES	31	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT01100000266557	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT01030000234607.A.a.b.b	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a	ENSGT01050000244866.A.a.a.a.a
Long-tailed chinchilla	MODERN SPECIES	122	CENPB (ENSCLAG00000017935)	SPEF1 (ENSCLAG00000013471)	ADISSP (ENSCLAG00000013586)	HSPA12B (ENSCLAG00000011219)	SIGLEC1 (ENSCLAG00000013751)	ADAM33 (ENSCLAG00000011084)	ENSCLAG00000009584	ATRN (ENSCLAG00000010887)	ENSCLAG00000012573	DNAAF9 (ENSCLAG00000013491) #17	SLC4A11 (ENSCLAG00000012612) #18	ITPA (ENSCLAG00000012396) #19	DDRGK1 (ENSCLAG00000012959) #20	LZTS3 (ENSCLAG00000010167) #21	FASTKD5 (ENSCLAG00000017812)	UBOX5 (ENSCLAG00000012136) #22	MRPS26 (ENSCLAG00000011719) #25	PTPRA (ENSCLAG00000014599) #26	VPS16 (ENSCLAG00000010899) #27	PCED1A (ENSCLAG00000010239) #28	TMEM239 (ENSCLAG00000010005) #29	ENSCLAG00000009947	CPXM1 (ENSCLAG00000010049) #30	EBF4 (ENSCLAG00000016129) #31	IDH3B (ENSCLAG00000012613) #32	NOP56 (ENSCLAG00000013816) #34	TMC2 (ENSCLAG00000013446) #35	SNRPB (ENSCLAG00000012442)	TGM6 (ENSCLAG00000012346)	TGM3 (ENSCLAG00000010817)	STK35 (ENSCLAG00000010739)
Degu	MODERN SPECIES	101	SPEF1 (ENSODEG00000005543)	ADISSP (ENSODEG00000006785)	HSPA12B (ENSODEG00000006345)	SIGLEC1 (ENSODEG00000005702)	GFRA4 (ENSODEG00000006159)	ENSODEG00000005788	ATRN (ENSODEG00000004625)	ENSODEG00000005518	DNAAF9 (ENSODEG00000005205) #17	SLC4A11 (ENSODEG00000006000) #18	ITPA (ENSODEG00000005202) #19	DDRGK1 (ENSODEG00000005502) #20	LZTS3 (ENSODEG00000006348) #21	ENSODEG00000019287	FASTKD5 (ENSODEG00000005773)	UBOX5 (ENSODEG00000006821) #22	AVP (ENSODEG00000006589) #23	ENSODEG00000004605 #24	MRPS26 (ENSODEG00000004501) #25	PTPRA (ENSODEG00000005651) #26	VPS16 (ENSODEG00000004474) #27	PCED1A (ENSODEG00000005153) #28	ENSODEG00000004687	CPXM1 (ENSODEG00000005511) #30	EBF4 (ENSODEG00000005079) #31	IDH3B (ENSODEG00000006040) #32	ENSODEG00000005708 #34	ENSODEG00000005500 #34	TMC2 (ENSODEG00000004874) #35	ENSODEG00000004305	TGM6 (ENSODEG00000008085)
Guinea pig	MODERN SPECIES	8	AP5S1 (ENSCPOG00000034150)	CDC25B (ENSCPOG00000007223)	CENPB (ENSCPOG00000007221)	SPEF1 (ENSCPOG00000035881)	ADISSP (ENSCPOG00000007216)	HSPA12B (ENSCPOG00000007213)	SIGLEC1 (ENSCPOG00000007205)	ADAM33 (ENSCPOG00000019634)	GFRA4 (ENSCPOG00000034307)	ATRN (ENSCPOG00000007193)	DNAAF9 (ENSCPOG00000038300) #17	SLC4A11 (ENSCPOG00000001277) #18	ITPA (ENSCPOG00000039557) #19	DDRGK1 (ENSCPOG00000001272) #20	LZTS3 (ENSCPOG00000034395) #21	UBOX5 (ENSCPOG00000020493) #22	FASTKD5 (ENSCPOG00000023356)	AVP (ENSCPOG00000023592) #23	ENSCPOG00000001717 #24	MRPS26 (ENSCPOG00000037912) #25	PTPRA (ENSCPOG00000020873) #26	VPS16 (ENSCPOG00000003602) #27	PCED1A (ENSCPOG00000025475) #28	CPXM1 (ENSCPOG00000011936) #30	EBF4 (ENSCPOG00000004862) #31	IDH3B (ENSCPOG00000015319) #32	NOP56 (ENSCPOG00000015315) #34	TMC2 (ENSCPOG00000015312) #35	SNRPB (ENSCPOG00000039408)	TGM6 (ENSCPOG00000015309)	TGM3 (ENSCPOG00000015307)
Lagomorpha	ANCESTRAL SPECIES	67	ENSGT00390000013178	ENSGT00940000158524	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711	ENSGT00940000159032	ENSGT01100000263535.a.a	ENSGT00940000158971	ENSGT00940000160491	ENSGT00940000157346	ENSGT00390000003692 #17	ENSGT00940000154894 #18	ENSGT00390000015399 #19	ENSGT00390000017193 #20	ENSGT00940000154078.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00390000004511.d.a.b #23	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00910000144368	ENSGT00940000156141.C #30	ENSGT00950000182859.A.a.a.a #31	ENSGT00950000182989.D.a.b #32	ENSGT00940000153534.B #34	ENSGT01050000244942.b.a.b #35	ENSGT00940000155052.e.a	ENSGT01050000244866.A.a.a.a.a
Rabbit	MODERN SPECIES	15	AP5S1 (ENSOCUG00000011213)	ENSOCUG00000013659	ENSOCUG00000036420	SPEF1 (ENSOCUG00000003498)	ENSOCUG00000012726	HSPA12B (ENSOCUG00000012719)	SIGLEC1 (ENSOCUG00000012702)	ADAM33 (ENSOCUG00000012683)	ENSOCUG00000012675	ATRN (ENSOCUG00000012655)	DNAAF9 (ENSOCUG00000025410) #17	SLC4A11 (ENSOCUG00000004077) #18	ITPA (ENSOCUG00000004070) #19	DDRGK1 (ENSOCUG00000012618) #20	LZTS3 (ENSOCUG00000004066) #21	UBOX5 (ENSOCUG00000026346) #22	ENSOCUG00000008352 #24	MRPS26 (ENSOCUG00000012218) #25	ENSOCUG00000032897	ENSOCUG00000001769 #23	PTPRA (ENSOCUG00000021376) #26	VPS16 (ENSOCUG00000012371) #27	PCED1A (ENSOCUG00000014939) #28	ENSOCUG00000007314 #29	CPXM1 (ENSOCUG00000006186) #30	EBF4 (ENSOCUG00000023917) #31	IDH3B (ENSOCUG00000024051) #32	NOP56 (ENSOCUG00000014960) #34	TMC2 (ENSOCUG00000014078) #35	ENSOCUG00000006902	ENSOCUG00000014042
Pika	MODERN SPECIES	1172											DNAAF9 (ENSOPRG00000015087) #17	SLC4A11 (ENSOPRG00000015043) #18	ITPA (ENSOPRG00000015022) #19	DDRGK1 (ENSOPRG00000015004) #20	LZTS3 (ENSOPRG00000014988) #21	UBOX5 (ENSOPRG00000018916) #22	AVP (ENSOPRG00000014980) #23	ENSOPRG00000014962 #24	ENSOPRG00000014944	PTPRA (ENSOPRG00000018434) #26