Mus_A	ANCESTRAL SPECIES		ENSGT00940000158524	ENSGT00940000162810 #7	ENSGT00910000144159.A.a #8	ENSGT00390000008711 #9	ENSGT00940000159032 #11	ENSGT01100000263535.a.a #12	ENSGT00940000158971 #13	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894 #17	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014 #30	ENSGT00910000144368 #31	ENSGT00940000156141.C #32	ENSGT00950000182859.A.a.a.a #33	ENSGT00950000182989.D.a.b #34	ENSGT00940000153534.B #35	ENSGT01050000244942.b.a.b #36	ENSGT00940000155052.e.a #37
Ryukyu mouse	MODERN SPECIES	11	Cenpb (MGP_CAROLIEiJ_G0024323) #7	Spef1 (MGP_CAROLIEiJ_G0024322) #8	1700037H04Rik (MGP_CAROLIEiJ_G0024321) #9	MGP_CAROLIEiJ_G0024320 #10	Hspa12b (MGP_CAROLIEiJ_G0024319) #11	Siglec1 (MGP_CAROLIEiJ_G0024318) #12	Adam33 (MGP_CAROLIEiJ_G0024317) #13	Gfra4 (MGP_CAROLIEiJ_G0024316) #14	Atrn (MGP_CAROLIEiJ_G0024315) #15	Dnaaf9 (MGP_CAROLIEiJ_G0024314) #16	Slc4a11 (MGP_CAROLIEiJ_G0024313) #17	Itpa (MGP_CAROLIEiJ_G0024312) #18	Ddrgk1 (MGP_CAROLIEiJ_G0024311) #19	Lzts3 (MGP_CAROLIEiJ_G0024310) #20	Fastkd5 (MGP_CAROLIEiJ_G0024309) #21	Ubox5 (MGP_CAROLIEiJ_G0024308) #22	Avp (MGP_CAROLIEiJ_G0024307) #23	Oxt (MGP_CAROLIEiJ_G0024306) #24	Mrps26 (MGP_CAROLIEiJ_G0024305) #25	Ptpra (MGP_CAROLIEiJ_G0024304) #26	Vps16 (MGP_CAROLIEiJ_G0024303) #27	Pced1a (MGP_CAROLIEiJ_G0024302) #28	Tmem239 (MGP_CAROLIEiJ_G0024301) #29	1700020A23Rik (MGP_CAROLIEiJ_G0024300) #30	MGP_CAROLIEiJ_G0024299 #31	Cpxm1 (MGP_CAROLIEiJ_G0024298) #32	Ebf4 (MGP_CAROLIEiJ_G0024297) #33	Idh3b (MGP_CAROLIEiJ_G0024296) #34	Nop56 (MGP_CAROLIEiJ_G0024295) #35	Tmc2 (MGP_CAROLIEiJ_G0024294) #36	Snrpb (MGP_CAROLIEiJ_G0024293) #37
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000158524	ENSGT00940000162810 #7	ENSGT00910000144159.A.a #8	ENSGT00390000008711 #9	ENSGT00940000159032 #11	ENSGT01100000263535.a.a #12	ENSGT00940000158971 #13	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894 #17	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014 #30	ENSGT00910000144368 #31	ENSGT00940000156141.C #32	ENSGT00950000182859.A.a.a.a #33	ENSGT00950000182989.D.a.b #34	ENSGT00940000153534.B #35	ENSGT01050000244942.b.a.b #36	ENSGT00940000155052.e.a #37
Mouse	MODERN SPECIES	11	Cdc25b (ENSMUSG00000027330)	Cenpb (ENSMUSG00000068267) #7	Spef1 (ENSMUSG00000027329) #8	1700037H04Rik (ENSMUSG00000027327) #9	Hspa12b (ENSMUSG00000074793) #11	Siglec1 (ENSMUSG00000027322) #12	Adam33 (ENSMUSG00000027318) #13	Gfra4 (ENSMUSG00000027316) #14	Atrn (ENSMUSG00000027312) #15	Dnaaf9 (ENSMUSG00000027309) #16	Slc4a11 (ENSMUSG00000074796) #17	Itpa (ENSMUSG00000074797) #18	Ddrgk1 (ENSMUSG00000068290) #19	Lzts3 (ENSMUSG00000037703) #20	Fastkd5 (ENSMUSG00000079043) #21	Ubox5 (ENSMUSG00000027300) #22	Avp (ENSMUSG00000037727) #23	Oxt (ENSMUSG00000027301) #24	Mrps26 (ENSMUSG00000037740) #25	Ptpra (ENSMUSG00000027303) #26	Vps16 (ENSMUSG00000027411) #27	Pced1a (ENSMUSG00000037773) #28	Tmem239 (ENSMUSG00000049692) #29	1700020A23Rik (ENSMUSG00000027409) #30	Cpxm1 (ENSMUSG00000027408) #32	Ebf4 (ENSMUSG00000053552) #33	Idh3b (ENSMUSG00000027406) #34	Nop56 (ENSMUSG00000027405) #35	Tmc2 (ENSMUSG00000060332) #36	Snrpb (ENSMUSG00000027404) #37	Tgm6 (ENSMUSG00000027403)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000158524	ENSGT00940000162810 #7	ENSGT00910000144159.A.a #8	ENSGT00390000008711 #9	ENSGT00940000159032 #11	ENSGT01100000263535.a.a #12	ENSGT00940000158971 #13	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894 #17	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #28	ENSGT00390000005090 #29	ENSGT00940000165014 #30	ENSGT00910000144368 #31	ENSGT00940000156141.C #32	ENSGT00950000182859.A.a.a.a #33	ENSGT00950000182989.D.a.b #34	ENSGT00940000153534.B #35	ENSGT01050000244942.b.a.b #36	ENSGT00940000155052.e.a #37
spretus	MODERN SPECIES	11	Cdc25b (MGP_SPRETEiJ_G0025244)	Cenpb (MGP_SPRETEiJ_G0025243) #7	Spef1 (MGP_SPRETEiJ_G0025242) #8	1700037H04Rik (MGP_SPRETEiJ_G0025241) #9	MGP_SPRETEiJ_G0025240	Hspa12b (MGP_SPRETEiJ_G0025239) #11	Siglec1 (MGP_SPRETEiJ_G0025238) #12	Adam33 (MGP_SPRETEiJ_G0025237) #13	Gfra4 (MGP_SPRETEiJ_G0025236) #14	Atrn (MGP_SPRETEiJ_G0025235) #15	Slc4a11 (MGP_SPRETEiJ_G0025233) #17	Itpa (MGP_SPRETEiJ_G0025232) #18	Ddrgk1 (MGP_SPRETEiJ_G0025231) #19	Lzts3 (MGP_SPRETEiJ_G0025230) #20	Fastkd5 (MGP_SPRETEiJ_G0025229) #21	Ubox5 (MGP_SPRETEiJ_G0025228) #22	Avp (MGP_SPRETEiJ_G0025227) #23	Oxt (MGP_SPRETEiJ_G0025226) #24	Mrps26 (MGP_SPRETEiJ_G0025225) #25	Ptpra (MGP_SPRETEiJ_G0025224) #26	Vps16 (MGP_SPRETEiJ_G0025223) #27	Pced1a (MGP_SPRETEiJ_G0025222) #28	Tmem239 (MGP_SPRETEiJ_G0025221) #29	1700020A23Rik (MGP_SPRETEiJ_G0025220) #30	MGP_SPRETEiJ_G0025219 #31	Cpxm1 (MGP_SPRETEiJ_G0025218) #32	Ebf4 (MGP_SPRETEiJ_G0025217) #33	Idh3b (MGP_SPRETEiJ_G0025216) #34	Nop56 (MGP_SPRETEiJ_G0025215) #35	Tmc2 (MGP_SPRETEiJ_G0025214) #36	Snrpb (MGP_SPRETEiJ_G0025213) #37
Steppe mouse	MODERN SPECIES	3100	1700037H04Rik (ENSMSIG00000014310) #9	Hspa12b (ENSMSIG00000014280) #11	Siglec1 (ENSMSIG00000014173) #12	Adam33 (ENSMSIG00000014090) #13	Gfra4 (ENSMSIG00000014050) #14	Atrn (ENSMSIG00000014020) #15	ENSMSIG00000014004	ENSMSIG00000013992	ENSMSIG00000013972	Dnaaf9 (ENSMSIG00000013648) #16	Slc4a11 (ENSMSIG00000013565) #17	ENSMSIG00000013514 #18	Ddrgk1 (ENSMSIG00000013480) #19	Lzts3 (ENSMSIG00000013473) #20	ENSMSIG00000013450	Ubox5 (ENSMSIG00000013436) #22	Avp (ENSMSIG00000013423) #23	Oxt (ENSMSIG00000013416) #24	Mrps26 (ENSMSIG00000013383) #25	ENSMSIG00000013369	Ptpra (ENSMSIG00000013175) #26	Vps16 (ENSMSIG00000013066) #27	Tmem239 (ENSMSIG00000013056) #29	1700020A23Rik (ENSMSIG00000013042) #30	Cpxm1 (ENSMSIG00000012969) #32	Ebf4 (ENSMSIG00000012856) #33	ENSMSIG00000012850	Idh3b (ENSMSIG00000012771) #34	Nop56 (ENSMSIG00000012714) #35	Tmc2 (ENSMSIG00000012652) #36	Snrpb (ENSMSIG00000012633) #37