Bovidae	ANCESTRAL SPECIES	10	ENSGT00940000158524 #10	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT01080000258042	ENSGT01100000265926	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #32	ENSGT00390000005090 #33	ENSGT00910000144368 #34	ENSGT00940000156141.C #35	ENSGT00950000182859.A.a.a.a #36	ENSGT00950000182989.D.a.b	ENSGT00940000153534.B #30
Caprinae	ANCESTRAL SPECIES	23	ENSGT00940000158524.g #10	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453.g #25	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #32	ENSGT00390000005090 #33	ENSGT00910000144368 #34	ENSGT00940000156141.C #35	ENSGT00950000182859.A.a.a.a #36	ENSGT00950000182989.D.a.b	ENSGT00940000153534.B #30	ENSGT01050000244942.b.a.b	ENSGT00940000155052.e.a	ENSGT01050000244866.A.a.a.a.a
Rambouillet Sheep	MODERN SPECIES	4	PANK2 (ENSOARG00020003725) #7	ENSOARG00020003796 #8	AP5S1 (ENSOARG00020003820) #9	ENSOARG00020003856 #10	ADISSP (ENSOARG00020004070) #11	HSPA12B (ENSOARG00020004138) #12	SIGLEC1 (ENSOARG00020004259) #13	GFRA4 (ENSOARG00020004560) #14	ATRN (ENSOARG00020004637) #15	DNAAF9 (ENSOARG00020005584) #16	ENSOARG00020005771 #17	ITPA (ENSOARG00020005805) #18	DDRGK1 (ENSOARG00020005933) #19	LZTS3 (ENSOARG00020005955) #20	FASTKD5 (ENSOARG00020005990) #21	UBOX5 (ENSOARG00020006014) #22	AVP (ENSOARG00020006038) #23	OXT (ENSOARG00020006060) #24	MRPS26 (ENSOARG00020006087) #25	PTPRA (ENSOARG00020006169) #26	VPS16 (ENSOARG00020006312) #27	ENSOARG00020006897 #28	ENSOARG00020007012 #29	ENSOARG00020007094 #30	ENSOARG00020007460 #31	ENSOARG00020007480 #32	TMEM239 (ENSOARG00020007567) #33	C20orf141 (ENSOARG00020007585) #34	CPXM1 (ENSOARG00020007610) #35	EBF4 (ENSOARG00020007658) #36	ENSOARG00020008013 #37
Goat	MODERN SPECIES	4	ENSCHIG00000015422 #10	CENPB (ENSCHIG00000010945)	SPEF1 (ENSCHIG00000018718)	ADISSP (ENSCHIG00000013166) #11	HSPA12B (ENSCHIG00000026479) #12	SIGLEC1 (ENSCHIG00000017104) #13	ADAM33 (ENSCHIG00000011462)	GFRA4 (ENSCHIG00000024722) #14	ATRN (ENSCHIG00000026880) #15	DNAAF9 (ENSCHIG00000022179) #16	SLC4A11 (ENSCHIG00000016611)	ITPA (ENSCHIG00000014634) #18	DDRGK1 (ENSCHIG00000009311) #19	LZTS3 (ENSCHIG00000015799) #20	FASTKD5 (ENSCHIG00000011596) #21	UBOX5 (ENSCHIG00000011900) #22	AVP (ENSCHIG00000010500) #23	ENSCHIG00000017609 #24	ENSCHIG00000001147 #25	PTPRA (ENSCHIG00000017604) #26	VPS16 (ENSCHIG00000011213) #27	PCED1A (ENSCHIG00000010435) #32	TMEM239 (ENSCHIG00000011946) #33	C20orf141 (ENSCHIG00000010060) #34	CPXM1 (ENSCHIG00000021212) #35	EBF4 (ENSCHIG00000010850) #36	ENSCHIG00000022751 #37	IDH3B (ENSCHIG00000011555)	NOP56 (ENSCHIG00000023450) #30	TMC2 (ENSCHIG00000020430)	SNRPB (ENSCHIG00000025449)
Bovinae	ANCESTRAL SPECIES	20	ENSGT00940000158524 #10	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT00390000008453 #25	ENSGT01080000258042	ENSGT01100000265926	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #32	ENSGT00390000005090 #33	ENSGT00910000144368 #34	ENSGT00940000156141.C #35	ENSGT00950000182859.A.a.a.a #36	ENSGT00950000182989.D.a.b	ENSGT00940000153534.B #30
Bos	ANCESTRAL SPECIES	22	ENSGT00940000158524 #10	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.b.a	ENSGT00390000008453 #25	ENSGT01080000258042	ENSGT01100000265926	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #32	ENSGT00390000005090 #33	ENSGT00910000144368 #34	ENSGT00940000156141.C #35	ENSGT00950000182859.A.a.a.a #36	ENSGT00950000182989.D.a.b
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000158524 #10	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT01030000234607.A.a.b.b #21	ENSGT00510000049555 #22	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.b.a	ENSGT00390000008453 #25	ENSGT01080000258042	ENSGT01100000265926	ENSGT00390000005119	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #32	ENSGT00390000005090 #33	ENSGT00910000144368 #34	ENSGT00940000156141.C #35	ENSGT00950000182859.A.a.a.a #36	ENSGT00950000182989.D.a.b
Hybrid Bos Indicus	MODERN SPECIES	4	CDC25B (ENSBIXG00005014701) #10	CENPB (ENSBIXG00005014717)	SPEF1 (ENSBIXG00005014755)	ADISSP (ENSBIXG00005005708) #11	HSPA12B (ENSBIXG00005002130) #12	SIGLEC1 (ENSBIXG00005014838) #13	ADAM33 (ENSBIXG00005015586)	GFRA4 (ENSBIXG00005015659) #14	ATRN (ENSBIXG00005015681) #15	DNAAF9 (ENSBIXG00005002452) #16	ENSBIXG00005002531	ENSBIXG00005016013 #18	DDRGK1 (ENSBIXG00005016048) #19	LZTS3 (ENSBIXG00005016113) #20	FASTKD5 (ENSBIXG00005016144) #21	UBOX5 (ENSBIXG00005016186) #22	AVP (ENSBIXG00005016214) #23	ENSBIXG00005016246 #24	ENSBIXG00005006570	MRPS26 (ENSBIXG00005016270) #25	ENSBIXG00005016326	ENSBIXG00005016349	PTPRA (ENSBIXG00005016390) #26	VPS16 (ENSBIXG00005016496) #27	PCED1A (ENSBIXG00005007034) #32	TMEM239 (ENSBIXG00005016548) #33	C20orf141 (ENSBIXG00005016567) #34	CPXM1 (ENSBIXG00005016591) #35	EBF4 (ENSBIXG00005002747) #36	ENSBIXG00005016971 #37	IDH3B (ENSBIXG00005017044)
Cow	MODERN SPECIES	4	CDC25B (ENSBTAG00000008436) #10	CENPB (ENSBTAG00000045784)	SPEF1 (ENSBTAG00000006578)	ADISSP (ENSBTAG00000018735) #11	HSPA12B (ENSBTAG00000018732) #12	ENSBTAG00000027412	SIGLEC1 (ENSBTAG00000013167) #13	ADAM33 (ENSBTAG00000013163)	GFRA4 (ENSBTAG00000013160) #14	ATRN (ENSBTAG00000003848) #15	DNAAF9 (ENSBTAG00000003494) #16	SLC4A11 (ENSBTAG00000027409)	ITPA (ENSBTAG00000013776) #18	DDRGK1 (ENSBTAG00000013753) #19	LZTS3 (ENSBTAG00000020454) #20	UBOX5 (ENSBTAG00000015379) #22	FASTKD5 (ENSBTAG00000051021) #21	AVP (ENSBTAG00000008027) #23	OXT (ENSBTAG00000008026) #24	MRPS26 (ENSBTAG00000000825) #25	GNRH2 (ENSBTAG00000049511)	PTPRA (ENSBTAG00000011425) #26	ENSBTAG00000048414	VPS16 (ENSBTAG00000001320) #27	PCED1A (ENSBTAG00000003863) #32	TMEM239 (ENSBTAG00000021816) #33	C13H20orf141 (ENSBTAG00000021817) #34	CPXM1 (ENSBTAG00000011458) #35	ENSBTAG00000050499	EBF4 (ENSBTAG00000037757) #36	ENSBTAG00000052166 #37
Bos_a	ANCESTRAL SPECIES	7	ENSGT00390000013178 #9	ENSGT00940000158524 #10	ENSGT00940000162810	ENSGT00910000144159.A.a	ENSGT00390000008711 #11	ENSGT00940000159032 #12	ENSGT01100000263535.a.a #13	ENSGT00940000158971	ENSGT00940000160491 #14	ENSGT00940000157346 #15	ENSGT00390000003692 #16	ENSGT00940000154894	ENSGT00390000015399 #18	ENSGT00390000017193 #19	ENSGT00940000154078.b #20	ENSGT00510000049555 #22	ENSGT01030000234607.A.a.b.b #21	ENSGT00390000004511.d.a.b #23	ENSGT00390000004511.d.a.a #24	ENSGT01100000263481.n.a.b.a.b.b.a.b.a.a.b.a.b.a	ENSGT00390000008453 #25	ENSGT00390000005119	ENSGT01080000258042	ENSGT00940000159585 #26	ENSGT00390000003896 #27	ENSGT00390000002231.c #32	ENSGT00390000005090 #33	ENSGT00910000144368 #34	ENSGT00940000156141.C #35	ENSGT00950000182859.A.a.a.a #36	ENSGT00950000182989.D.a.b
Wild yak	MODERN SPECIES	619	MAVS (ENSBMUG00000021216) #8	AP5S1 (ENSBMUG00000021190) #9	CDC25B (ENSBMUG00000021164) #10	CENPB (ENSBMUG00000021122)	SPEF1 (ENSBMUG00000021110)	ADISSP (ENSBMUG00000021089) #11	HSPA12B (ENSBMUG00000021066) #12	SIGLEC1 (ENSBMUG00000021034) #13	ADAM33 (ENSBMUG00000020843)	ATRN (ENSBMUG00000020552) #15	DNAAF9 (ENSBMUG00000020518) #16	SLC4A11 (ENSBMUG00000020486)	ITPA (ENSBMUG00000020353) #18	DDRGK1 (ENSBMUG00000020325) #19	LZTS3 (ENSBMUG00000020278) #20	UBOX5 (ENSBMUG00000020233) #22	MRPS26 (ENSBMUG00000020209) #25	ENSBMUG00000020206	PTPRA (ENSBMUG00000020156) #26	VPS16 (ENSBMUG00000020060) #27	PCED1A (ENSBMUG00000019999) #32	TMEM239 (ENSBMUG00000019961) #33	C20orf141 (ENSBMUG00000019955) #34	CPXM1 (ENSBMUG00000019952) #35	ENSBMUG00000019937 #36	EBF4 (ENSBMUG00000019908) #36	ENSBMUG00000019875 #37	IDH3B (ENSBMUG00000019865)	NOP56 (ENSBMUG00000019823) #30	ENSBMUG00000019812
Domestic yak	MODERN SPECIES	3	CDC25B (ENSBGRG00000008281) #10	SPEF1 (ENSBGRG00000008783)	ADISSP (ENSBGRG00000008861) #11	HSPA12B (ENSBGRG00000009010) #12	SIGLEC1 (ENSBGRG00000009107) #13	ADAM33 (ENSBGRG00000009336)	GFRA4 (ENSBGRG00000010068) #14	ATRN (ENSBGRG00000010156) #15	DNAAF9 (ENSBGRG00000010669) #16	ENSBGRG00000011204	SLC4A11 (ENSBGRG00000011226)	ITPA (ENSBGRG00000011660) #18	ENSBGRG00000011840	DDRGK1 (ENSBGRG00000011866) #19	LZTS3 (ENSBGRG00000011995) #20	UBOX5 (ENSBGRG00000012095) #22	FASTKD5 (ENSBGRG00000012156) #21	AVP (ENSBGRG00000012208) #23	ENSBGRG00000012264 #24	ENSBGRG00000012319	MRPS26 (ENSBGRG00000012344) #25	GNRH2 (ENSBGRG00000012403)	ENSBGRG00000012443	PTPRA (ENSBGRG00000012527) #26	VPS16 (ENSBGRG00000013110) #27	PCED1A (ENSBGRG00000013633) #32	TMEM239 (ENSBGRG00000013692) #33	C20orf141 (ENSBGRG00000013721) #34	CPXM1 (ENSBGRG00000013785) #35	EBF4 (ENSBGRG00000013966) #36	ENSBGRG00000014313 #37
American bison	MODERN SPECIES	2997	AP5S1 (ENSBBBG00000019951) #9	CDC25B (ENSBBBG00000008018) #10	CENPB (ENSBBBG00000019830)	SPEF1 (ENSBBBG00000005366)	ADISSP (ENSBBBG00000005362) #11	HSPA12B (ENSBBBG00000019770) #12	SIGLEC1 (ENSBBBG00000019752) #13	ADAM33 (ENSBBBG00000019720)	ATRN (ENSBBBG00000007012) #15	DNAAF9 (ENSBBBG00000019434) #16	SLC4A11 (ENSBBBG00000019388)	ITPA (ENSBBBG00000008358) #18	DDRGK1 (ENSBBBG00000005001) #19	LZTS3 (ENSBBBG00000019286) #20	FASTKD5 (ENSBBBG00000019270) #21	UBOX5 (ENSBBBG00000004987) #22	ENSBBBG00000019257	MRPS26 (ENSBBBG00000019255) #25	GNRH2 (ENSBBBG00000019247)	PTPRA (ENSBBBG00000019230) #26	VPS16 (ENSBBBG00000019093) #27	PCED1A (ENSBBBG00000019029) #32	TMEM239 (ENSBBBG00000004850) #33	C20orf141 (ENSBBBG00000019008) #34	CPXM1 (ENSBBBG00000019000) #35	ENSBBBG00000018986 #36	ENSBBBG00000004829 #37	IDH3B (ENSBBBG00000008165)	NOP56 (ENSBBBG00000018939) #30	TMC2 (ENSBBBG00000004790)	SNRPB (ENSBBBG00000018900)