Rodentia	ANCESTRAL SPECIES	17	ENSGT01060000248581.A.b	ENSGT01100000263561.C.d.a	ENSGT01100000263561.C.d.b.a	ENSGT01100000263561.C.d.b.b	ENSGT00940000154646.C	ENSGT00940000155021.n	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00950000183216.d.j.b	ENSGT00940000153523.b	ENSGT00950000183216.d.j.a.a.a	ENSGT00940000153523.a	ENSGT00950000183216.d.j.a.a.b.a.b	ENSGT00950000183216.d.j.a.a.b.a.a
Rodentia_B	ANCESTRAL SPECIES	53			ENSGT01100000263561.C.d.b.b	ENSGT00940000154646.C	ENSGT00940000155021.m.a	ENSGT00940000155021.n	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00950000183216.d.j.b	ENSGT00940000153523.b
Myomorpha	ANCESTRAL SPECIES	64			ENSGT01100000263561.C.d.b.b	ENSGT00940000154646.C	ENSGT00940000155021.m.a	ENSGT00940000155021.n	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00950000183216.d.j.b	ENSGT00940000153523.b
Muroidea	ANCESTRAL SPECIES	79			ENSGT01100000263561.C.d.b.b	ENSGT00940000154646.C.s	ENSGT00940000155021.n	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00950000183216.d.j.b	ENSGT00940000153523.b
Muroidea_A	ANCESTRAL SPECIES	25	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.n	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00950000183216.d.j.b.b	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.a	ENSGT00940000163952.a	ENSGT00940000163952.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.b
Murinae	ANCESTRAL SPECIES	25	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.n	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00950000183216.d.j.b.b	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.a	ENSGT00940000163952.a.d	ENSGT00940000163952.a.c
Mus	ANCESTRAL SPECIES	16	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.a	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.n	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT00800000125293 #23
Mus_A	ANCESTRAL SPECIES	10	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.m.b.a.c.a	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT00800000125293 #23	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989.t	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505.x	ENSGT00390000012196	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00940000157240	ENSGT00940000160841	ENSGT00940000158589
Mus_B	ANCESTRAL SPECIES	9	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.m.b.a.c.a	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT00800000125293 #23	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989.t	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505.x	ENSGT00390000012196	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00940000157240	ENSGT00940000160841	ENSGT00940000158589
Mus_C	ANCESTRAL SPECIES	9	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.a	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.a.b	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT00800000125293 #23	ENSGT00390000011821.a	ENSGT00390000008490	ENSGT00940000154989.t	ENSGT00940000160159	ENSGT00950000183152.B.c.a	ENSGT00510000047027	ENSGT00940000159505.x	ENSGT00390000012196	ENSGT00390000012174	ENSGT00940000155587.a.b	ENSGT00940000159245	ENSGT00940000157240	ENSGT00940000160841	ENSGT00940000158589
Steppe mouse	MODERN SPECIES	2335								Cyp4f39 (ENSMSIG00000005240) #14	Pglyrp2 (ENSMSIG00000005276) #15	Rasal3 (ENSMSIG00000005292) #16	Wiz (ENSMSIG00000005353) #17	Akap8l (ENSMSIG00000005494) #18	ENSMSIG00000005542 #19	ENSMSIG00000005581 #20	Ephx3 (ENSMSIG00000005824) #21	Notch3 (ENSMSIG00000005867) #22	ENSMSIG00000005992 #23
spretus	MODERN SPECIES	8	Zfp870 (MGP_SPRETEiJ_G0022307)	Zfp799 (MGP_SPRETEiJ_G0022306)	Zfp811 (MGP_SPRETEiJ_G0022305)	Zfp871 (MGP_SPRETEiJ_G0022304)	Cyp4f15 (MGP_SPRETEiJ_G0022303)	Cyp4f40 (MGP_SPRETEiJ_G0022302)	Cyp4f17 (MGP_SPRETEiJ_G0022300)	Cyp4f39 (MGP_SPRETEiJ_G0022299) #14	Pglyrp2 (MGP_SPRETEiJ_G0022298) #15	Rasal3 (MGP_SPRETEiJ_G0022297) #16	MGP_SPRETEiJ_G0022296 #17	Akap8l (MGP_SPRETEiJ_G0022295) #18	Akap8 (MGP_SPRETEiJ_G0022294) #19	Brd4 (MGP_SPRETEiJ_G0022293)	Ephx3 (MGP_SPRETEiJ_G0022292) #21	Notch3 (MGP_SPRETEiJ_G0022291) #22	Rrp1b (MGP_SPRETEiJ_G0022290)	Hsf2bp (MGP_SPRETEiJ_G0022289)	Sik1 (MGP_SPRETEiJ_G0022288)	Cryaa (MGP_SPRETEiJ_G0022287)	MGP_SPRETEiJ_G0022286	Cbs (MGP_SPRETEiJ_G0022285)	Pknox1 (MGP_SPRETEiJ_G0022284)	Ndufv3 (MGP_SPRETEiJ_G0022283)	Wdr4 (MGP_SPRETEiJ_G0022282)	Pde9a (MGP_SPRETEiJ_G0022281)	Slc37a1 (MGP_SPRETEiJ_G0022280)	Rsph1 (MGP_SPRETEiJ_G0022279)	Ubash3a (MGP_SPRETEiJ_G0022278)	Tmprss3 (MGP_SPRETEiJ_G0022277)	Tff1 (MGP_SPRETEiJ_G0022276)
Mouse	MODERN SPECIES	8	Zfp811 (ENSMUSG00000055202)	Zfp871 (ENSMUSG00000024298)	Cyp4f15 (ENSMUSG00000073424)	Cyp4f40 (ENSMUSG00000090700)	Cyp4f37 (ENSMUSG00000062464)	Cyp4f16 (ENSMUSG00000048440)	Cyp4f17 (ENSMUSG00000091586)	Cyp4f39 (ENSMUSG00000061126) #14	Pglyrp2 (ENSMUSG00000079563) #15	Rasal3 (ENSMUSG00000052142) #16	Wiz (ENSMUSG00000024050) #17	Akap8l (ENSMUSG00000002625) #18	Akap8 (ENSMUSG00000024045) #19	Brd4 (ENSMUSG00000024002)	Ephx3 (ENSMUSG00000037577) #21	Notch3 (ENSMUSG00000038146) #22	Rrp1b (ENSMUSG00000058392)	Hsf2bp (ENSMUSG00000002076)	Sik1 (ENSMUSG00000024042)	Cryaa (ENSMUSG00000024041)	U2af1 (ENSMUSG00000061613)	Cbs (ENSMUSG00000024039)	Pknox1 (ENSMUSG00000006705)	Ndufv3 (ENSMUSG00000024038)	Wdr4 (ENSMUSG00000024037)	Pde9a (ENSMUSG00000041119)	Slc37a1 (ENSMUSG00000024036)	Rsph1 (ENSMUSG00000024033)	Ubash3a (ENSMUSG00000042345)	Tmprss3 (ENSMUSG00000024034)	Tff1 (ENSMUSG00000024032)
Ryukyu mouse	MODERN SPECIES	8	Zfp811 (MGP_CAROLIEiJ_G0021392)	Zfp871 (MGP_CAROLIEiJ_G0021391)	Cyp4f15 (MGP_CAROLIEiJ_G0021390)	Cyp4f40 (MGP_CAROLIEiJ_G0021389)	MGP_CAROLIEiJ_G0021388	MGP_CAROLIEiJ_G0021387	Cyp4f17 (MGP_CAROLIEiJ_G0021386)	Cyp4f39 (MGP_CAROLIEiJ_G0021385) #14	Pglyrp2 (MGP_CAROLIEiJ_G0021384) #15	Rasal3 (MGP_CAROLIEiJ_G0021383) #16	MGP_CAROLIEiJ_G0021382 #17	Akap8l (MGP_CAROLIEiJ_G0021381) #18	Akap8 (MGP_CAROLIEiJ_G0021380) #19	Brd4 (MGP_CAROLIEiJ_G0021379)	Ephx3 (MGP_CAROLIEiJ_G0021378) #21	Notch3 (MGP_CAROLIEiJ_G0021377) #22	Rrp1b (MGP_CAROLIEiJ_G0021376)	MGP_CAROLIEiJ_G0021375	Sik1 (MGP_CAROLIEiJ_G0021374)	Cryaa (MGP_CAROLIEiJ_G0021373)	U2af1 (MGP_CAROLIEiJ_G0021372)	Cbs (MGP_CAROLIEiJ_G0021371)	Pknox1 (MGP_CAROLIEiJ_G0021370)	Ndufv3 (MGP_CAROLIEiJ_G0021369)	Wdr4 (MGP_CAROLIEiJ_G0021368)	Pde9a (MGP_CAROLIEiJ_G0021367)	Slc37a1 (MGP_CAROLIEiJ_G0021366)	Rsph1 (MGP_CAROLIEiJ_G0021365)	Ubash3a (MGP_CAROLIEiJ_G0021364)	Tmprss3 (MGP_CAROLIEiJ_G0021363)	Tff1 (MGP_CAROLIEiJ_G0021362)
Shrew mouse	MODERN SPECIES	9	Zfp870 (MGP_PahariEiJ_G0020400)	Zfp799 (MGP_PahariEiJ_G0020399)	MGP_PahariEiJ_G0020398	Zfp871 (MGP_PahariEiJ_G0020397)	Cyp4f15 (MGP_PahariEiJ_G0020396)	Cyp4f40 (MGP_PahariEiJ_G0020395)	MGP_PahariEiJ_G0020393	Cyp4f39 (MGP_PahariEiJ_G0020392) #14	Pglyrp2 (MGP_PahariEiJ_G0020391) #15	Rasal3 (MGP_PahariEiJ_G0020390) #16	MGP_PahariEiJ_G0020389 #17	Akap8l (MGP_PahariEiJ_G0020388) #18	Akap8 (MGP_PahariEiJ_G0020387) #19	Brd4 (MGP_PahariEiJ_G0020386)	Ephx3 (MGP_PahariEiJ_G0020385) #21	Notch3 (MGP_PahariEiJ_G0020384) #22
Rat	MODERN SPECIES	17	Cyp4f4 (ENSRNOG00000032895)	Cyp4f40 (ENSRNOG00000043344)	ENSRNOG00000067067	ENSRNOG00000068651	Cyp4f37 (ENSRNOG00000048450)	Cyp4f5 (ENSRNOG00000042496)	Cyp4f39 (ENSRNOG00000029478) #14	Pglyrp2 (ENSRNOG00000042318) #15	Rasal3 (ENSRNOG00000006167) #16	Wiz (ENSRNOG00000006217) #17	Akap8l (ENSRNOG00000006355) #18	Akap8 (ENSRNOG00000006559) #19	Brd4 (ENSRNOG00000006770)	Ephx3 (ENSRNOG00000027319) #21	AABR07055864.2 (ENSRNOG00000060598) #23	Notch3 (ENSRNOG00000004346) #22	AABR07055861.1 (ENSRNOG00000028146)	Ilvbl (ENSRNOG00000028512)	Syde1 (ENSRNOG00000007307)	Or1i2 (ENSRNOG00000007348)	Casp14 (ENSRNOG00000007352)	Ccdc105 (ENSRNOG00000007375)	Slc1a6 (ENSRNOG00000007509)	Or7c70 (ENSRNOG00000042262)	Or7a38e (ENSRNOG00000062508)	Or7a39 (ENSRNOG00000065533)	Or7a38 (ENSRNOG00000062903)	Or7a38c (ENSRNOG00000064163)	Or7a38b (ENSRNOG00000065304)	Or7a38d (ENSRNOG00000069189)	Or7a36 (ENSRNOG00000062310)
Cricetidae	ANCESTRAL SPECIES	25	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.m.b.a	ENSGT00940000155021.m.b.b	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.a	ENSGT00940000163952.a	ENSGT00940000163952.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.b	ENSGT00950000183069.b.b.a.a.e.b.b
Cricetinae	ANCESTRAL SPECIES	4	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT01100000263561.C.d.b.b	ENSGT00940000154646.C.s.b	ENSGT00940000155021.m.b.a	ENSGT00940000155021.m.b.b	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00940000153523.b.b	ENSGT00950000183216.d.j.b.a	ENSGT00940000153523.b.a	ENSGT00940000163952.a	ENSGT00940000163952.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.b	ENSGT00950000183069.b.b.a.a.e.b.b	ENSGT00940000155885
Chinese hamster chok1gshd	MODERN SPECIES	2	Zfp871 (ENSCGRG00001018414)	Cyp4f15 (ENSCGRG00001012799)	ENSCGRG00001009134	Cyp4f40 (ENSCGRG00001020643)	ENSCGRG00001018621	ENSCGRG00001020897	Cyp4f17 (ENSCGRG00001021347)	Cyp4f39 (ENSCGRG00001023660) #14	Pglyrp2 (ENSCGRG00001000486) #15	Rasal3 (ENSCGRG00001023853) #16	ENSCGRG00001017844 #17	ENSCGRG00001019147 #18	Akap8 (ENSCGRG00001016207) #19	Brd4 (ENSCGRG00001022342)	Ephx3 (ENSCGRG00001017044) #21	Notch3 (ENSCGRG00001020179) #22	ENSCGRG00001013161 #23	ENSCGRG00001024090	ENSCGRG00001001082	Ilvbl (ENSCGRG00001003112)	Syde1 (ENSCGRG00001005250)	Or1i2 (ENSCGRG00001010185)	Casp14 (ENSCGRG00001015488)	Ccdc105 (ENSCGRG00001014217)	Slc1a6 (ENSCGRG00001015926)	Or7c70 (ENSCGRG00001007644)	ENSCGRG00001000829	ENSCGRG00001010046	Or7a37 (ENSCGRG00001024013)	Or7a36 (ENSCGRG00001006807)	ENSCGRG00001009644
Golden Hamster	MODERN SPECIES	764	Zfp799 (ENSMAUG00000003880)	Zfp811 (ENSMAUG00000009717)	Zfp871 (ENSMAUG00000019949)	Cyp4f40 (ENSMAUG00000002140)	ENSMAUG00000009024	ENSMAUG00000021406	ENSMAUG00000002860	Cyp4f39 (ENSMAUG00000021470) #14	Pglyrp2 (ENSMAUG00000013267) #15	Rasal3 (ENSMAUG00000010568) #16	ENSMAUG00000020479	Akap8l (ENSMAUG00000021519) #18	Akap8 (ENSMAUG00000021975) #19	Brd4 (ENSMAUG00000019036)	Ephx3 (ENSMAUG00000010068) #21	Notch3 (ENSMAUG00000021946) #22	Ilvbl (ENSMAUG00000015514)	Syde1 (ENSMAUG00000010021)	Casp14 (ENSMAUG00000015211)	Ccdc105 (ENSMAUG00000015800)	Slc1a6 (ENSMAUG00000010823)	Or7a37 (ENSMAUG00000018329)	ENSMAUG00000011922	2610008E11Rik (ENSMAUG00000007597)	ENSMAUG00000008319	ENSMAUG00000020592	ENSMAUG00000009575	ENSMAUG00000013541	Plpp2 (ENSMAUG00000009359)	ENSMAUG00000005384	ENSMAUG00000008189
Cricetidae_B	ANCESTRAL SPECIES	57	ENSGT00950000182755.b.a.a.b.a.b.a.a.b.a.b	ENSGT00940000154646.C.s.a	ENSGT00940000154646.C.s.b	ENSGT00940000155021.m.b.a	ENSGT00940000155021.m.b.b	ENSGT00940000155021.m.a.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000153523.b.b	ENSGT00940000153523.b.a	ENSGT00940000163952.a	ENSGT00940000163952.b	ENSGT00940000153505.a.a.c.a.a.a.b.a.a.b	ENSGT00950000183069.b.b.a.a.e.b.b
Northern American deer mouse	MODERN SPECIES	14	Rps28 (ENSPEMG00000015848)	Ndufa7 (ENSPEMG00000016851)	Cd320 (ENSPEMG00000016121)	ENSPEMG00000025671	ENSPEMG00000024877	ENSPEMG00000004681	ENSPEMG00000020195	Pglyrp2 (ENSPEMG00000007236) #15	Rasal3 (ENSPEMG00000008310) #16	ENSPEMG00000014668 #17	Akap8l (ENSPEMG00000008156) #18	Akap8 (ENSPEMG00000016622) #19	Brd4 (ENSPEMG00000015342)	Ephx3 (ENSPEMG00000001114) #21	ENSPEMG00000026978 #23	Notch3 (ENSPEMG00000003368) #22	Or10b1 (ENSPEMG00000031391)	Ilvbl (ENSPEMG00000016636)	Syde1 (ENSPEMG00000017967)	Or1i2 (ENSPEMG00000002732)	Casp14 (ENSPEMG00000003806)	Ccdc105 (ENSPEMG00000008931)	ENSPEMG00000015450	ENSPEMG00000009495	Or7a36 (ENSPEMG00000011041)	ENSPEMG00000008828	ENSPEMG00000008518	2610008E11Rik (ENSPEMG00000029764)	ENSPEMG00000030002	ENSPEMG00000028855	ENSPEMG00000008525
Prairie vole	MODERN SPECIES	353	ENSMOCG00000000627	Zfp871 (ENSMOCG00000003294)	Cyp4f15 (ENSMOCG00000008767)	Cyp4f40 (ENSMOCG00000003798)	ENSMOCG00000005787	ENSMOCG00000016388	Cyp4f17 (ENSMOCG00000000767)	Cyp4f39 (ENSMOCG00000008129) #14	Pglyrp2 (ENSMOCG00000012093) #15	Rasal3 (ENSMOCG00000000323) #16	Wiz (ENSMOCG00000004182) #17	Akap8l (ENSMOCG00000017098) #18	Akap8 (ENSMOCG00000001588) #19	Brd4 (ENSMOCG00000019710)	Ephx3 (ENSMOCG00000016735) #21	Notch3 (ENSMOCG00000001344) #22	Ilvbl (ENSMOCG00000007265)	Syde1 (ENSMOCG00000010233)	Casp14 (ENSMOCG00000013844)	Ccdc105 (ENSMOCG00000013529)	Slc1a6 (ENSMOCG00000020405)	Or7a36 (ENSMOCG00000002619)	ENSMOCG00000008222	2610008E11Rik (ENSMOCG00000008949)	ENSMOCG00000017805	ENSMOCG00000020687	ENSMOCG00000021154	ENSMOCG00000007015	ENSMOCG00000011467	ENSMOCG00000011429	ENSMOCG00000014683
Upper Galilee mountains blind mole rat	MODERN SPECIES	688				Cdk20 (ENSNGAG00000015145)	ENSNGAG00000013432	ENSNGAG00000003982	Cyp4f39 (ENSNGAG00000002067) #14	Pglyrp2 (ENSNGAG00000001513) #15	Rasal3 (ENSNGAG00000015073) #16	Wiz (ENSNGAG00000012635) #17	ENSNGAG00000012342 #18	Akap8 (ENSNGAG00000010875) #19	ENSNGAG00000006488 #20	Ephx3 (ENSNGAG00000000440) #21	ENSNGAG00000016261 #23	Notch3 (ENSNGAG00000004387) #22
Lesser Egyptian jerboa	MODERN SPECIES	256										Rasal3 (ENSJJAG00000014593) #16	Wiz (ENSJJAG00000013018) #17	Akap8l (ENSJJAG00000012334) #18	Akap8 (ENSJJAG00000011639) #19	Brd4 (ENSJJAG00000010157)	Ephx3 (ENSJJAG00000009549) #21	Notch3 (ENSJJAG00000012676) #22	Ilvbl (ENSJJAG00000010226)	Syde1 (ENSJJAG00000009758)	ENSJJAG00000009634	Casp14 (ENSJJAG00000009615)	Ccdc105 (ENSJJAG00000009592)	Slc1a6 (ENSJJAG00000009089)	Or7a40 (ENSJJAG00000008810)
Kangaroo rat	MODERN SPECIES	427	Sin3b (ENSDORG00000010014)	Myo9b (ENSDORG00000014352)	Use1 (ENSDORG00000027734)	ENSDORG00000009450	ENSDORG00000026497	ENSDORG00000028575	Cyp4f39 (ENSDORG00000014108) #14	Pglyrp2 (ENSDORG00000023745) #15	Rasal3 (ENSDORG00000007490) #16	Wiz (ENSDORG00000001773) #17	ENSDORG00000013070 #18	ENSDORG00000027410 #19	ENSDORG00000025260 #20	ENSDORG00000026409 #20	Ephx3 (ENSDORG00000002211) #21	Notch3 (ENSDORG00000014382) #22	Ilvbl (ENSDORG00000023570)	ENSDORG00000025379	Casp14 (ENSDORG00000011308)	Slc1a6 (ENSDORG00000003912)
Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000163407	ENSGT01060000248581.A.b	ENSGT01100000263561.C.d.a	ENSGT01100000263561.C.d.b.b	ENSGT00940000154646.C	ENSGT00940000155021.n	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084	ENSGT00940000153523.b	ENSGT00950000183216.d.j.a.a.a.a.a.a.b	ENSGT00940000153523.a.b	ENSGT00950000183216.d.j.b	ENSGT00940000163952	ENSGT00950000183216.d.j.a.a.b.a.b	ENSGT00940000153523.a.a
Sciuridae	ANCESTRAL SPECIES	20	ENSGT01030000234542.b.b.a.a.a.b	ENSGT01090000260018.B.a.a	ENSGT01100000263561.C.d.a.i	ENSGT01100000263561.C.d.b.b	ENSGT00940000154646.C	ENSGT00940000155021.n	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084.a	ENSGT00940000153523.b	ENSGT00950000183216.d.j.a.a.a.a.a.a.b	ENSGT00940000153523.a.b	ENSGT00950000183216.d.j.b	ENSGT00950000183216.d.j.a.a.b.a.b	ENSGT00940000153523.a.a	ENSGT00950000183216.d.j.a.a.a.a.b.a
Marmotini	ANCESTRAL SPECIES	12	ENSGT00940000161678	ENSGT00940000157246	ENSGT01030000234542.b.b.a.a.a.b	ENSGT01030000234542.b.b.b	ENSGT00940000162704	ENSGT01100000263561.C.d.a.j	ENSGT00940000163407	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084.a.d	ENSGT00940000153523.b.c.a	ENSGT00940000163161.h	ENSGT00940000162597.r	ENSGT00950000183216.d.j.a.a.b.a.a
Marmotini_b	ANCESTRAL SPECIES	12	ENSGT01030000234542.b.b.b	ENSGT00940000162704	ENSGT00950000182755.b.a.a.b.a.b.a.b.b.a.b.c	ENSGT00950000182755.b.a.a.b.a.b.a.a.b	ENSGT01100000263561.C.d.a.i	ENSGT01100000263561.C.d.a.j	ENSGT00940000163407	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000162084.a.d	ENSGT00950000183216.d.j.b
Arctic ground squirrel	MODERN SPECIES	73	ENSUPAG00010021742	ENSUPAG00010021745	ENSUPAG00010021748	ENSUPAG00010021764	ENSUPAG00010000031	ENSUPAG00010000051	CYP4F3 (ENSUPAG00010000077)	CYP4F22 (ENSUPAG00010000617) #14	PGLYRP2 (ENSUPAG00010000648) #15	RASAL3 (ENSUPAG00010000678) #16	WIZ (ENSUPAG00010000750) #17	AKAP8L (ENSUPAG00010000867) #18	AKAP8 (ENSUPAG00010000900) #19	BRD4 (ENSUPAG00010000930)	EPHX3 (ENSUPAG00010001059) #21	NOTCH3 (ENSUPAG00010001075) #22	ILVBL (ENSUPAG00010001107)	SYDE1 (ENSUPAG00010001206)	OR1I1 (ENSUPAG00010001223)	CASP14 (ENSUPAG00010001230)	CCDC105 (ENSUPAG00010001244)	SLC1A6 (ENSUPAG00010001271)
Squirrel	MODERN SPECIES	196	TPM4 (ENSSTOG00000024252)	ENSSTOG00000026892	ENSSTOG00000033644	ENSSTOG00000029948	ENSSTOG00000016037	ENSSTOG00000033817	CYP4F8 (ENSSTOG00000016028)	CYP4F22 (ENSSTOG00000016025) #14	PGLYRP2 (ENSSTOG00000021401) #15	ENSSTOG00000024022 #16	ENSSTOG00000006775 #17	AKAP8L (ENSSTOG00000022788) #18	AKAP8 (ENSSTOG00000006762) #19	BRD4 (ENSSTOG00000003443)	EPHX3 (ENSSTOG00000003433) #21	NOTCH3 (ENSSTOG00000003378) #22	ENSSTOG00000019789	ILVBL (ENSSTOG00000012069)	SYDE1 (ENSSTOG00000022732)	OR1I1 (ENSSTOG00000012066)	CASP14 (ENSSTOG00000030614)	CCDC105 (ENSSTOG00000023699)	SLC1A6 (ENSSTOG00000020911)	ENSSTOG00000025841	ENSSTOG00000020401	ENSSTOG00000020413
Alpin marmot	MODERN SPECIES	24	ENSMMMG00000022612	ENSMMMG00000022610	ENSMMMG00000022564	ENSMMMG00000022557	CYP4F2 (ENSMMMG00000022533)	CYP4F8 (ENSMMMG00000022511)	CYP4F22 (ENSMMMG00000022504) #14	PGLYRP2 (ENSMMMG00000022496) #15	RASAL3 (ENSMMMG00000022474) #16	ENSMMMG00000022459 #17	AKAP8L (ENSMMMG00000022438) #18	AKAP8 (ENSMMMG00000022416) #19	ENSMMMG00000022411	ENSMMMG00000022407 #20	EPHX3 (ENSMMMG00000022401) #21	NOTCH3 (ENSMMMG00000022356) #22	ENSMMMG00000022351	ILVBL (ENSMMMG00000022300)	SYDE1 (ENSMMMG00000022294)	OR1I1 (ENSMMMG00000022293)	CASP14 (ENSMMMG00000022289)	CCDC105 (ENSMMMG00000022286)	SLC1A6 (ENSMMMG00000022279)	ENSMMMG00000022278	ENSMMMG00000022277	ENSMMMG00000022259	ENSMMMG00000022258	ENSMMMG00000022253	ENSMMMG00000022214	ENSMMMG00000022213	ENSMMMG00000022196
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005016928	ENSSVLG00005016914	CYP4F3 (ENSSVLG00005016688)	ENSSVLG00005016604	ENSSVLG00005016546	ENSSVLG00005016389	CYP4F22 (ENSSVLG00005016293) #14	PGLYRP2 (ENSSVLG00005016234) #15	RASAL3 (ENSSVLG00005016079) #16	WIZ (ENSSVLG00005015495) #17	AKAP8L (ENSSVLG00005015355) #18	AKAP8 (ENSSVLG00005015317) #19	BRD4 (ENSSVLG00005025918)	EPHX3 (ENSSVLG00005025914) #21	ENSSVLG00005025912 #23	NOTCH3 (ENSSVLG00005025909) #22	ILVBL (ENSSVLG00005025905)	SYDE1 (ENSSVLG00005025903)	OR1I1 (ENSSVLG00005025901)	ENSSVLG00005025898	CASP14 (ENSSVLG00005025896)	CCDC105 (ENSSVLG00005025891)	SLC1A6 (ENSSVLG00005025880)	ENSSVLG00005025872	ENSSVLG00005025870	ENSSVLG00005025869	ENSSVLG00005025867	ENSSVLG00005025866	ENSSVLG00005025864	ENSSVLG00005025860	ENSSVLG00005025854
Hystricomorpha	ANCESTRAL SPECIES	55					ENSGT00940000154646.C	ENSGT00940000155021.m.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00800000125293 #23	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000154227.b	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00950000183216.d.j.b	ENSGT00940000163952	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT00390000018759	ENSGT00950000182886.a.a.b	ENSGT00940000160312	ENSGT00390000003420.a.a
Naked mole-rat female	MODERN SPECIES	21			ENSHGLG00000038601	ENSHGLG00000006444	CYP4F3 (ENSHGLG00000005064)	ENSHGLG00000010876	CYP4F22 (ENSHGLG00000007762) #14	PGLYRP2 (ENSHGLG00000006376) #15	RASAL3 (ENSHGLG00000014513) #16	ENSHGLG00000015009 #17	AKAP8L (ENSHGLG00000019540) #18	AKAP8 (ENSHGLG00000006879) #19	BRD4 (ENSHGLG00000004103)	EPHX3 (ENSHGLG00000050720) #21	ENSHGLG00000004261 #23	NOTCH3 (ENSHGLG00000006380) #22	ENSHGLG00000046535	ENSHGLG00000003524	ILVBL (ENSHGLG00000006099)	SYDE1 (ENSHGLG00000004301)	OR1I1 (ENSHGLG00000020056)	CASP14 (ENSHGLG00000003676)	ENSHGLG00000011020	CCDC105 (ENSHGLG00000009025)	SLC1A6 (ENSHGLG00000044141)	ENSHGLG00000020442	ENSHGLG00000005565	ENSHGLG00000043939	ENSHGLG00000020237	ENSHGLG00000034158	ENSHGLG00000037347
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00950000182870.a.a.a.a	ENSGT00940000161259.B	ENSGT00940000154630.a	ENSGT01030000234573.A.b.b.a	ENSGT00940000155885	ENSGT00940000154646.C	ENSGT00940000155021.m.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00950000183216.d.j.b	ENSGT00940000163952	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT00390000018759	ENSGT00950000182886.a.a.b	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT01030000234559.a.a.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00950000182870.a.a.a.a	ENSGT00940000161259.B	ENSGT00940000154630.a	ENSGT01030000234573.A.b.b.a	ENSGT00940000155885	ENSGT00940000154646.C	ENSGT00940000155021.m.a	ENSGT00940000161507 #14	ENSGT00940000158718 #15	ENSGT00940000161423 #16	ENSGT00940000159979 #17	ENSGT00530000063777.a.a.a #18	ENSGT00530000063777.a.a.b #19	ENSGT00940000154549.b	ENSGT00940000162086 #21	ENSGT00940000160234 #22	ENSGT00940000158035	ENSGT01030000234635.a.a.a.b	ENSGT00940000162852.a	ENSGT00940000162117	ENSGT00390000003207	ENSGT00940000159972	ENSGT00940000153523.b
Long-tailed chinchilla	MODERN SPECIES	202	PLPP2 (ENSCLAG00000010976)	ENSCLAG00000018029	ENSCLAG00000017709	ENSCLAG00000010066	ENSCLAG00000010747	CYP4F2 (ENSCLAG00000009909)	ENSCLAG00000008878	CYP4F22 (ENSCLAG00000011778) #14	PGLYRP2 (ENSCLAG00000008866) #15	RASAL3 (ENSCLAG00000011595) #16	ENSCLAG00000013723 #17	AKAP8L (ENSCLAG00000008083) #18	AKAP8 (ENSCLAG00000008154) #19	BRD4 (ENSCLAG00000008703)	EPHX3 (ENSCLAG00000007405) #21	NOTCH3 (ENSCLAG00000010364) #22	ILVBL (ENSCLAG00000009795)	SYDE1 (ENSCLAG00000012531)	OR1I1 (ENSCLAG00000018035)	CASP14 (ENSCLAG00000016922)	CCDC105 (ENSCLAG00000016660)	SLC1A6 (ENSCLAG00000013046)	ENSCLAG00000017888
Degu	MODERN SPECIES	91	ENSODEG00000010516	ENSODEG00000012644	ENSODEG00000011468	ENSODEG00000019982	CYP4F8 (ENSODEG00000012418)	CYP4F22 (ENSODEG00000011011) #14	ENSODEG00000019784	PGLYRP2 (ENSODEG00000010857) #15	ENSODEG00000011358 #16	WIZ (ENSODEG00000011172) #17	AKAP8L (ENSODEG00000010840) #18	AKAP8 (ENSODEG00000011314) #19	ENSODEG00000010978	BRD4 (ENSODEG00000011937)	EPHX3 (ENSODEG00000010791) #21	NOTCH3 (ENSODEG00000011730) #22	ILVBL (ENSODEG00000011511)	SYDE1 (ENSODEG00000010751)	CASP14 (ENSODEG00000010016)	CCDC105 (ENSODEG00000011650)	SLC1A6 (ENSODEG00000011064)	ENSODEG00000010232	COL1A2 (ENSODEG00000010146)	CASD1 (ENSODEG00000010520)	ENSODEG00000009551	PEG10 (ENSODEG00000009969)	PPP1R9A (ENSODEG00000010739)	PON1 (ENSODEG00000009868)	PON3 (ENSODEG00000011235)	PON2 (ENSODEG00000010755)	ASB4 (ENSODEG00000010657)
Guinea pig	MODERN SPECIES	168	MIER2 (ENSCPOG00000025356)	PLPP2 (ENSCPOG00000026420)	ENSCPOG00000033745	ENSCPOG00000038272	ENSCPOG00000022613	ENSCPOG00000033269	CYP4F8 (ENSCPOG00000010488)	CYP4F22 (ENSCPOG00000039309) #14	PGLYRP2 (ENSCPOG00000024218) #15	RASAL3 (ENSCPOG00000003039) #16	ENSCPOG00000009735 #17	AKAP8L (ENSCPOG00000036348) #18	AKAP8 (ENSCPOG00000009712) #19	BRD4 (ENSCPOG00000001410)	EPHX3 (ENSCPOG00000006950) #21	NOTCH3 (ENSCPOG00000022014) #22	ENSCPOG00000021238	ILVBL (ENSCPOG00000005321)	SYDE1 (ENSCPOG00000027188)	OR1I1 (ENSCPOG00000024305)	CASP14 (ENSCPOG00000025545)	CCDC105 (ENSCPOG00000023751)	SLC1A6 (ENSCPOG00000002093)	ENSCPOG00000035987	ENSCPOG00000039012	ENSCPOG00000032536	ENSCPOG00000007338	ENSCPOG00000030751	ENSCPOG00000015657	ENSCPOG00000038355	ENSCPOG00000031371