Hystricomorpha	ANCESTRAL SPECIES	55					ENSGT00940000154646.C #10	ENSGT00940000155021.m.a #12	ENSGT00940000161507 #13	ENSGT00940000158718 #14	ENSGT00940000161423 #15	ENSGT00940000159979 #16	ENSGT00530000063777.a.a.a #17	ENSGT00530000063777.a.a.b #18	ENSGT00940000154549.b #19	ENSGT00940000162086 #20	ENSGT00800000125293 #21	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000154227.b #23	ENSGT00940000158035 #25	ENSGT01030000234635.a.a.a.b #26	ENSGT00940000162852.a #27	ENSGT00940000162117 #28	ENSGT00390000003207 #30	ENSGT00940000159972 #31	ENSGT00950000183216.d.j.b ##34	ENSGT00940000163952	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT00390000018759	ENSGT00950000182886.a.a.b	ENSGT00940000160312	ENSGT00390000003420.a.a
Naked mole-rat female	MODERN SPECIES	21			ENSHGLG00000038601 #9	ENSHGLG00000006444 #10	CYP4F3 (ENSHGLG00000005064) #11	ENSHGLG00000010876 #12	CYP4F22 (ENSHGLG00000007762) #13	PGLYRP2 (ENSHGLG00000006376) #14	RASAL3 (ENSHGLG00000014513) #15	ENSHGLG00000015009 #16	AKAP8L (ENSHGLG00000019540) #17	AKAP8 (ENSHGLG00000006879) #18	BRD4 (ENSHGLG00000004103) #19	EPHX3 (ENSHGLG00000050720) #20	ENSHGLG00000004261 #21	NOTCH3 (ENSHGLG00000006380) #22	ENSHGLG00000046535 #23	ENSHGLG00000003524 #24	ILVBL (ENSHGLG00000006099) #25	SYDE1 (ENSHGLG00000004301) #26	OR1I1 (ENSHGLG00000020056) #27	CASP14 (ENSHGLG00000003676) #28	ENSHGLG00000011020 #29	CCDC105 (ENSHGLG00000009025) #30	SLC1A6 (ENSHGLG00000044141) #31	ENSHGLG00000020442 #32	ENSHGLG00000005565 #33	ENSHGLG00000043939 #34	ENSHGLG00000020237 #35	ENSHGLG00000034158 #36	ENSHGLG00000037347 #37
Hystricomorpha_a	ANCESTRAL SPECIES	15	ENSGT00950000182870.a.a.a.a	ENSGT00940000161259.B	ENSGT00940000154630.a	ENSGT01030000234573.A.b.b.a	ENSGT00940000155885	ENSGT00940000154646.C #10	ENSGT00940000155021.m.a #12	ENSGT00940000161507 #13	ENSGT00940000158718 #14	ENSGT00940000161423 #15	ENSGT00940000159979 #16	ENSGT00530000063777.a.a.a #17	ENSGT00530000063777.a.a.b #18	ENSGT00940000154549.b #19	ENSGT00940000162086 #20	ENSGT00940000160234 #22	ENSGT01100000263561.C.c	ENSGT00940000158035 #25	ENSGT01030000234635.a.a.a.b #26	ENSGT00940000162852.a #27	ENSGT00940000162117 #28	ENSGT00390000003207 #30	ENSGT00940000159972 #31	ENSGT00950000183216.d.j.b ##34	ENSGT00940000163952	ENSGT00950000182755.b.a.a.a.a.a.b.d.b	ENSGT00390000018759	ENSGT00950000182886.a.a.b	ENSGT00940000160312	ENSGT00390000003420.a.a	ENSGT01030000234559.a.a.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	17	ENSGT00950000182870.a.a.a.a	ENSGT00940000161259.B	ENSGT00940000154630.a	ENSGT01030000234573.A.b.b.a	ENSGT00940000155885	ENSGT00940000154646.C #10	ENSGT00940000155021.m.a #12	ENSGT00940000161507 #13	ENSGT00940000158718 #14	ENSGT00940000161423 #15	ENSGT00940000159979 #16	ENSGT00530000063777.a.a.a #17	ENSGT00530000063777.a.a.b #18	ENSGT00940000154549.b #19	ENSGT00940000162086 #20	ENSGT00940000160234 #22	ENSGT00940000158035 #25	ENSGT01030000234635.a.a.a.b #26	ENSGT00940000162852.a #27	ENSGT00940000162117 #28	ENSGT00390000003207 #30	ENSGT00940000159972 #31	ENSGT00940000153523.b
Long-tailed chinchilla	MODERN SPECIES	202	PLPP2 (ENSCLAG00000010976)	ENSCLAG00000018029	ENSCLAG00000017709	ENSCLAG00000010066	ENSCLAG00000010747 #12	CYP4F2 (ENSCLAG00000009909) #10	ENSCLAG00000008878 #10	CYP4F22 (ENSCLAG00000011778) #13	PGLYRP2 (ENSCLAG00000008866) #14	RASAL3 (ENSCLAG00000011595) #15	ENSCLAG00000013723 #16	AKAP8L (ENSCLAG00000008083) #17	AKAP8 (ENSCLAG00000008154) #18	BRD4 (ENSCLAG00000008703) #19	EPHX3 (ENSCLAG00000007405) #20	NOTCH3 (ENSCLAG00000010364) #22	ILVBL (ENSCLAG00000009795) #25	SYDE1 (ENSCLAG00000012531) #26	OR1I1 (ENSCLAG00000018035) #27	CASP14 (ENSCLAG00000016922) #28	CCDC105 (ENSCLAG00000016660) #30	SLC1A6 (ENSCLAG00000013046) #31	ENSCLAG00000017888
Degu	MODERN SPECIES	91	ENSODEG00000010516	ENSODEG00000012644	ENSODEG00000011468	ENSODEG00000019982	CYP4F8 (ENSODEG00000012418) #12	CYP4F22 (ENSODEG00000011011) #13	ENSODEG00000019784	PGLYRP2 (ENSODEG00000010857) #14	ENSODEG00000011358 #15	WIZ (ENSODEG00000011172) #16	AKAP8L (ENSODEG00000010840) #17	AKAP8 (ENSODEG00000011314) #18	ENSODEG00000010978	BRD4 (ENSODEG00000011937) #19	EPHX3 (ENSODEG00000010791) #20	NOTCH3 (ENSODEG00000011730) #22	ILVBL (ENSODEG00000011511) #25	SYDE1 (ENSODEG00000010751) #26	CASP14 (ENSODEG00000010016) #28	CCDC105 (ENSODEG00000011650) #30	SLC1A6 (ENSODEG00000011064) #31	ENSODEG00000010232	COL1A2 (ENSODEG00000010146)	CASD1 (ENSODEG00000010520)	ENSODEG00000009551	PEG10 (ENSODEG00000009969)	PPP1R9A (ENSODEG00000010739)	PON1 (ENSODEG00000009868)	PON3 (ENSODEG00000011235)	PON2 (ENSODEG00000010755)	ASB4 (ENSODEG00000010657)
Guinea pig	MODERN SPECIES	168	MIER2 (ENSCPOG00000025356)	PLPP2 (ENSCPOG00000026420)	ENSCPOG00000033745	ENSCPOG00000038272	ENSCPOG00000022613	ENSCPOG00000033269	CYP4F8 (ENSCPOG00000010488) #12	CYP4F22 (ENSCPOG00000039309) #13	PGLYRP2 (ENSCPOG00000024218) #14	RASAL3 (ENSCPOG00000003039) #15	ENSCPOG00000009735 #16	AKAP8L (ENSCPOG00000036348) #17	AKAP8 (ENSCPOG00000009712) #18	BRD4 (ENSCPOG00000001410) #19	EPHX3 (ENSCPOG00000006950) #20	NOTCH3 (ENSCPOG00000022014) #22	ENSCPOG00000021238	ILVBL (ENSCPOG00000005321) #25	SYDE1 (ENSCPOG00000027188) #26	OR1I1 (ENSCPOG00000024305) #27	CASP14 (ENSCPOG00000025545) #28	CCDC105 (ENSCPOG00000023751) #30	SLC1A6 (ENSCPOG00000002093) #31	ENSCPOG00000035987 ##34	ENSCPOG00000039012 ##34	ENSCPOG00000032536 ##34	ENSCPOG00000007338	ENSCPOG00000030751 #37	ENSCPOG00000015657	ENSCPOG00000038355 ##34	ENSCPOG00000031371