Rodentia_A	ANCESTRAL SPECIES	16	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b #10	ENSGT00940000155012.e #11	ENSGT00940000155012.f.a.b ##11	ENSGT00940000155012.f.a.a #13	ENSGT00940000155012.f.b #12	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #28	ENSGT00390000000427 #29	ENSGT00940000157375 #30	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #31	ENSGT00950000182788.a.b.b.b.e #32	ENSGT00950000183069.b.b.a.a ##7	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a
Hystricomorpha	ANCESTRAL SPECIES	19	ENSGT00940000159311.c	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b #10	ENSGT00940000155012.e #11	ENSGT00940000155012.f.b #12	ENSGT00940000155012.f.a.a #13	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #28	ENSGT00390000000427 #29	ENSGT00940000157375 #30	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #31	ENSGT00950000182788.a.b.b.b.e #32	ENSGT00950000183069.b.b.b.e.b.a.b #7	ENSGT00950000182970.B #8	ENSGT00390000016717 #9
Hystricomorpha_a	ANCESTRAL SPECIES	69	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b #10	ENSGT00940000155012.e #11	ENSGT00940000155012.f.a.a.b ##11	ENSGT00940000155012.f.b #12	ENSGT00940000155012.f.a.a.a #13	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #28	ENSGT00390000000427 #29	ENSGT00940000157375 #30	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #31	ENSGT00950000182788.a.b.b.b.e #32	ENSGT00950000183069.b.b.b.e.b.a.b.a #7	ENSGT00950000182970.B #8	ENSGT00390000016717 #9
Guinea pig	MODERN SPECIES	42	ENSCPOG00000020526 #7	DDX11 (ENSCPOG00000003795) #8	ENSCPOG00000034691 #9	ENSCPOG00000026613 #10	ENSCPOG00000027614 #11	ENSCPOG00000000303 #12	ENSCPOG00000038706 #13	CLEC4G (ENSCPOG00000013185) #14	ENSCPOG00000024312 #15	TRAPPC5 (ENSCPOG00000027190) #16	ENSCPOG00000038319 #17	RETN (ENSCPOG00000037415) #18	STXBP2 (ENSCPOG00000022154) #19	PCP2 (ENSCPOG00000020356) #20	PET100 (ENSCPOG00000038374) #21	XAB2 (ENSCPOG00000009283) #22	CAMSAP3 (ENSCPOG00000022909) #23	PNPLA6 (ENSCPOG00000010823) #24	MCOLN1 (ENSCPOG00000009726) #25	ZNF358 (ENSCPOG00000009724) #26	ENSCPOG00000004011 #27	TEX45 (ENSCPOG00000004245) #28	PEX11G (ENSCPOG00000003503) #29	ENSCPOG00000000165 #30	INSR (ENSCPOG00000012986) #31	ENSCPOG00000024100 #32	ENSCPOG00000033338 #33	ENSCPOG00000023880 #34	ENSCPOG00000027337 #35	ENSCPOG00000023273 #36	MAN2B1 (ENSCPOG00000002295) #37
Hystricomorpha_b	ANCESTRAL SPECIES	93	ENSGT00940000159311.c	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b #10	ENSGT00940000155012.e #11	ENSGT00940000155012.f.a.a.b ##11	ENSGT00940000155012.f.b #12	ENSGT00940000155012.f.a.a.a #13	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #28	ENSGT00390000000427 #29	ENSGT00940000157375 #30	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #31
Long-tailed chinchilla	MODERN SPECIES	270	LRRC8E (ENSCLAG00000003511)	PRR36 (ENSCLAG00000003789)	EVI5L (ENSCLAG00000002315)	ENSCLAG00000003602 #10	ENSCLAG00000001953 #11	ENSCLAG00000002053 ##11	ENSCLAG00000002179 #12	ENSCLAG00000002265 #13	CLEC4G (ENSCLAG00000002415) #14	FCER2 (ENSCLAG00000002410) #15	TRAPPC5 (ENSCLAG00000002743) #16	RETN (ENSCLAG00000002761) #18	STXBP2 (ENSCLAG00000002794) #19	PCP2 (ENSCLAG00000002861) #20	PET100 (ENSCLAG00000002916) #21	XAB2 (ENSCLAG00000002999) #22	CAMSAP3 (ENSCLAG00000006625) #23	PNPLA6 (ENSCLAG00000002800) #24	MCOLN1 (ENSCLAG00000003025) #25	ZNF358 (ENSCLAG00000003278) #26	PEX11G (ENSCLAG00000003378) #29	ARHGEF18 (ENSCLAG00000003467) #30	ENSCLAG00000002497	INSR (ENSCLAG00000002624) #31
Degu	MODERN SPECIES	255	ENSODEG00000010815	EVI5L (ENSODEG00000012663)	ENSODEG00000010671	ENSODEG00000011113 #10	ENSODEG00000012311 #11	ENSODEG00000011218	ENSODEG00000012346 #12	ENSODEG00000010680 #13	CLEC4G (ENSODEG00000011804) #14	FCER2 (ENSODEG00000012810) #15	TRAPPC5 (ENSODEG00000012661) #16	RETN (ENSODEG00000012179) #18	STXBP2 (ENSODEG00000012329) #19	PCP2 (ENSODEG00000011839) #20	PET100 (ENSODEG00000011997) #21	XAB2 (ENSODEG00000011794) #22	ENSODEG00000012129 #23	PNPLA6 (ENSODEG00000012572) #24	MCOLN1 (ENSODEG00000012479) #25	ZNF358 (ENSODEG00000012219) #26	TEX45 (ENSODEG00000012588) #28	PEX11G (ENSODEG00000012355) #29	ARHGEF18 (ENSODEG00000012629) #30	INSR (ENSODEG00000012024) #31	ENSODEG00000019915	ENSODEG00000011907
Naked mole-rat female	MODERN SPECIES	21	TGFBR3L (ENSHGLG00000010450)	MAP2K7 (ENSHGLG00000009771)	ENSHGLG00000050671	LRRC8E (ENSHGLG00000005847)	PRR36 (ENSHGLG00000005714)	EVI5L (ENSHGLG00000006112)	ENSHGLG00000017766 #12	CLEC4G (ENSHGLG00000049245) #14	FCER2 (ENSHGLG00000017734) #15	TRAPPC5 (ENSHGLG00000009223) #16	ENSHGLG00000050122 #17	RETN (ENSHGLG00000008198) #18	STXBP2 (ENSHGLG00000006173) #19	PCP2 (ENSHGLG00000005217) #20	PET100 (ENSHGLG00000049177) #21	XAB2 (ENSHGLG00000011423) #22	CAMSAP3 (ENSHGLG00000006897) #23	ENSHGLG00000041062	PNPLA6 (ENSHGLG00000006968) #24	MCOLN1 (ENSHGLG00000009121) #25	ZNF358 (ENSHGLG00000006780) #26	ENSHGLG00000035056	ENSHGLG00000046061	ENSHGLG00000010501 #28	PEX11G (ENSHGLG00000009398) #29	ARHGEF18 (ENSHGLG00000007068) #30	ENSHGLG00000016034 #31	ENSHGLG00000009496 #8	ENSHGLG00000014951 #9	ENSHGLG00000018498	ENSHGLG00000021249
Sciuridae	ANCESTRAL SPECIES	23	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b #10	ENSGT00940000155012.e.a #11	ENSGT00940000155012.f.a.b ##11	ENSGT00940000155012.f.a.a #13	ENSGT00940000155012.f.b #12	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #28	ENSGT00390000000427 #29	ENSGT00940000157375 #30	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #31	ENSGT00950000183069.b.b.a.a.a ##7	ENSGT00950000183069.b.a.b ##7	ENSGT00950000183069.b.b.a.a.b ##7	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	7	ENSSVLG00005016832 #11	ENSSVLG00005025790 ##11	ENSSVLG00005025789 #11	CLEC4G (ENSSVLG00005025786) #14	FCER2 (ENSSVLG00005025781) #15	TRAPPC5 (ENSSVLG00005025775) #16	ENSSVLG00005025771 #17	RETN (ENSSVLG00005025768) #18	ENSSVLG00005025761 #20	ENSSVLG00005025752 #22	ENSSVLG00005025742 #23	ENSSVLG00005025738 #19	ENSSVLG00005025729 #19	ENSSVLG00005025722 #20	PET100 (ENSSVLG00005025709) #21	ENSSVLG00005025698 #22	CAMSAP3 (ENSSVLG00005025682) #23	ENSSVLG00005025663 #24	MCOLN1 (ENSSVLG00005025644) #25	ZNF358 (ENSSVLG00005025634) #26	ENSSVLG00005025619 #28	PEX11G (ENSSVLG00005025607) #29	ARHGEF18 (ENSSVLG00005025588) #30	ENSSVLG00005025569	INSR (ENSSVLG00005025555) #31	ENSSVLG00005025544 ##7	ENSSVLG00005025504 #7	ENSSVLG00005025471 #7	ENSSVLG00005025459 ##7	ENSSVLG00005025293 ##7	ENSSVLG00005025148 #7
Eurasian red squirrel	MODERN SPECIES	7	SNAPC2 (ENSSVLG00005017416)	MAP2K7 (ENSSVLG00005017196)	LRRC8E (ENSSVLG00005017143)	EVI5L (ENSSVLG00005017039)	ENSSVLG00005016996	ENSSVLG00005016924 #10	ENSSVLG00005016832 #11	ENSSVLG00005025790 ##11	ENSSVLG00005025789 #11	CLEC4G (ENSSVLG00005025786) #14	FCER2 (ENSSVLG00005025781) #15	TRAPPC5 (ENSSVLG00005025775) #16	ENSSVLG00005025771 #17	RETN (ENSSVLG00005025768) #18	ENSSVLG00005025761 #20	ENSSVLG00005025752 #22	ENSSVLG00005025742 #23	ENSSVLG00005025738 #19	ENSSVLG00005025729 #19	ENSSVLG00005025722 #20	PET100 (ENSSVLG00005025709) #21	ENSSVLG00005025698 #22	CAMSAP3 (ENSSVLG00005025682) #23	ENSSVLG00005025663 #24	MCOLN1 (ENSSVLG00005025644) #25	ZNF358 (ENSSVLG00005025634) #26	ENSSVLG00005025619 #28	PEX11G (ENSSVLG00005025607) #29	ARHGEF18 (ENSSVLG00005025588) #30	ENSSVLG00005025569	INSR (ENSSVLG00005025555) #31
Marmotini	ANCESTRAL SPECIES	24	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b #10	ENSGT00940000155012.e.a #11	ENSGT00940000155012.f.a.b ##11	ENSGT00940000155012.f.a.a #13	ENSGT00940000155012.f.b #12	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #28	ENSGT00390000000427 #29	ENSGT00940000157375 #30	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #31	ENSGT00950000183069.b.b.a.a.a ##7	ENSGT00950000183069.b.a.b ##7	ENSGT00950000183069.b.b.a.a.b ##7	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125
Alpin marmot	MODERN SPECIES	88	LRRC8E (ENSMMMG00000021332)	EVI5L (ENSMMMG00000021217)	ENSMMMG00000021207 #10	ENSMMMG00000021198 #11	ENSMMMG00000021194 ##11	ENSMMMG00000021180 #13	ENSMMMG00000021176 #12	CLEC4G (ENSMMMG00000021166) #14	FCER2 (ENSMMMG00000021072) #15	TRAPPC5 (ENSMMMG00000021066) #16	ENSMMMG00000021054 #17	RETN (ENSMMMG00000021052) #18	STXBP2 (ENSMMMG00000021045) #19	PCP2 (ENSMMMG00000020990) #20	PET100 (ENSMMMG00000020986) #21	XAB2 (ENSMMMG00000020949) #22	CAMSAP3 (ENSMMMG00000020919) #23	PNPLA6 (ENSMMMG00000020700) #24	MCOLN1 (ENSMMMG00000020678) #25	ENSMMMG00000020650 #28	PEX11G (ENSMMMG00000020643) #29	ARHGEF18 (ENSMMMG00000020610) #30	INSR (ENSMMMG00000020292) #31	ENSMMMG00000020286 ##7	ENSMMMG00000020284 ##7	ENSMMMG00000020280 ##7	ENSMMMG00000020241 ##7	ENSMMMG00000020108 #7	ENSMMMG00000020088	ADGRE1 (ENSMMMG00000019994)	VAV1 (ENSMMMG00000019856)
Marmotini_b	ANCESTRAL SPECIES	9	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b #10	ENSGT00940000155012.e.a #11	ENSGT00940000155012.f.a.b ##11	ENSGT00940000155012.f.a.a #13	ENSGT00940000155012.f.b #12	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #28	ENSGT00390000000427 #29	ENSGT00940000157375 #30	ENSGT00940000154146.b.b.b	ENSGT00940000155404 #31	ENSGT00950000183069.b.b.a.a.a ##7	ENSGT00950000183069.b.b.a.a.b ##7	ENSGT00940000162163	ENSGT00940000161354	ENSGT00940000159125	ENSGT00940000154130.a.a.a
Arctic ground squirrel	MODERN SPECIES	640						ENSUPAG00010018355 #11	ENSUPAG00010018364 #12	CLEC4G (ENSUPAG00010018389) #14	ENSUPAG00010018405 #15	TRAPPC5 (ENSUPAG00010018411) #16	ENSUPAG00010018416 #17	RETN (ENSUPAG00010018431) #18	STXBP2 (ENSUPAG00010018439) #19	PCP2 (ENSUPAG00010018459) #20	PET100 (ENSUPAG00010018530) #21	XAB2 (ENSUPAG00010018543) #22	CAMSAP3 (ENSUPAG00010018576) #23	ENSUPAG00010018639	PNPLA6 (ENSUPAG00010018645) #24	MCOLN1 (ENSUPAG00010018941) #25	ZNF358 (ENSUPAG00010018967) #26	ENSUPAG00010018970 #28	PEX11G (ENSUPAG00010018993) #29	ARHGEF18 (ENSUPAG00010019006) #30	INSR (ENSUPAG00010019031) #31	ENSUPAG00010019060 ##7	ENSUPAG00010019126 ##7	ENSUPAG00010019129 ##7	ENSUPAG00010019132	ADGRE1 (ENSUPAG00010019145)	VAV1 (ENSUPAG00010019168)
Squirrel	MODERN SPECIES	188	LRRC8E (ENSSTOG00000028937)	ENSSTOG00000028455	EVI5L (ENSSTOG00000008992)	ENSSTOG00000021108 #10	ENSSTOG00000020523 #11	ENSSTOG00000029769 ##11	ENSSTOG00000022637 #13	ENSSTOG00000028847 #12	CLEC4G (ENSSTOG00000000832) #14	FCER2 (ENSSTOG00000019631) #15	TRAPPC5 (ENSSTOG00000028575) #16	RETN (ENSSTOG00000026972) #18	STXBP2 (ENSSTOG00000012901) #19	PET100 (ENSSTOG00000024943) #21	PCP2 (ENSSTOG00000023694) #20	XAB2 (ENSSTOG00000024533) #22	CAMSAP3 (ENSSTOG00000021723) #23	PNPLA6 (ENSSTOG00000016189) #24	MCOLN1 (ENSSTOG00000016182) #25	ZNF358 (ENSSTOG00000020033) #26	TEX45 (ENSSTOG00000009768) #28	PEX11G (ENSSTOG00000009764) #29	ARHGEF18 (ENSSTOG00000009745) #30	ENSSTOG00000033747	INSR (ENSSTOG00000001089) #31	ENSSTOG00000028099	ADGRE1 (ENSSTOG00000014756)	VAV1 (ENSSTOG00000010806)	TRIP10 (ENSSTOG00000004959)	GPR108 (ENSSTOG00000028930)	ENSSTOG00000032813