Mus_A	ANCESTRAL SPECIES	8	ENSGT00940000162906.c.b.c.a.a #9	ENSGT00940000162906.c.b.d ##9	ENSGT00940000155012.e ##11	ENSGT00940000155012.f.a.b.c #11	ENSGT00940000155012.f.a.b.d #12	ENSGT00940000155012.f.b ##11	ENSGT00940000155012.f.a.a.d #13	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31
Ryukyu mouse	MODERN SPECIES	17	MGP_CAROLIEiJ_G0030791 #7	Evi5l (MGP_CAROLIEiJ_G0030790) #8	Cd209g (MGP_CAROLIEiJ_G0030789) #9	MGP_CAROLIEiJ_G0030788 #10	Cd209b (MGP_CAROLIEiJ_G0030786) #11	Cd209d (MGP_CAROLIEiJ_G0030785) #12	Cd209a (MGP_CAROLIEiJ_G0030784) #13	MGP_CAROLIEiJ_G0030783 #14	Fcer2a (MGP_CAROLIEiJ_G0030782) #15	Trappc5 (MGP_CAROLIEiJ_G0030781) #16	Mcemp1 (MGP_CAROLIEiJ_G0030780) #17	Retn (MGP_CAROLIEiJ_G0030779) #18	Stxbp2 (MGP_CAROLIEiJ_G0030778) #19	Pcp2 (MGP_CAROLIEiJ_G0030777) #20	Pet100 (MGP_CAROLIEiJ_G0030776) #21	Xab2 (MGP_CAROLIEiJ_G0030775) #22	Camsap3 (MGP_CAROLIEiJ_G0030774) #23	Pnpla6 (MGP_CAROLIEiJ_G0030772) #24	Mcoln1 (MGP_CAROLIEiJ_G0030771) #25	Zfp358 (MGP_CAROLIEiJ_G0030770) #26	Tex45 (MGP_CAROLIEiJ_G0030769) #27	Pex11g (MGP_CAROLIEiJ_G0030768) #28	MGP_CAROLIEiJ_G0030767 #29	MGP_CAROLIEiJ_G0030766 #30	Insr (MGP_CAROLIEiJ_G0030765) #31
Mus_B	ANCESTRAL SPECIES	6	ENSGT00940000162906.c.b.d ##9	ENSGT00940000155012.e ##11	ENSGT00940000155012.f.a.b.c #11	ENSGT00940000155012.f.a.b.d #12	ENSGT00940000155012.f.b ##11	ENSGT00940000155012.f.a.a.d #13	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00960000193309	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31
Mus_C	ANCESTRAL SPECIES	5	ENSGT00940000162906.c.b.c.b ##9	ENSGT00940000155012.e ##11	ENSGT00940000155012.f.a.b.c #11	ENSGT00940000155012.f.a.b.d #12	ENSGT00940000155012.f.b ##11	ENSGT00940000155012.f.a.a.d #13	ENSGT00940000161836 #14	ENSGT00940000162574 #15	ENSGT00390000000976 #16	ENSGT00960000193309	ENSGT00390000007959 #17	ENSGT00390000016177.e #18	ENSGT00940000160045 #19	ENSGT00940000162025 #20	ENSGT00390000016884 #21	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31
spretus	MODERN SPECIES	17	Evi5l (MGP_SPRETEiJ_G0031898) #8	MGP_SPRETEiJ_G0031897 ##9	Cd209c (MGP_SPRETEiJ_G0031896) ##11	Cd209b (MGP_SPRETEiJ_G0031895) #11	Cd209d (MGP_SPRETEiJ_G0031894) #12	Cd209e (MGP_SPRETEiJ_G0031893) ##11	Cd209a (MGP_SPRETEiJ_G0031892) #13	MGP_SPRETEiJ_G0031891	Fcer2a (MGP_SPRETEiJ_G0031890) #15	Trappc5 (MGP_SPRETEiJ_G0031889) #16	Mcemp1 (MGP_SPRETEiJ_G0031888) #17	Retn (MGP_SPRETEiJ_G0031887) #18	Stxbp2 (MGP_SPRETEiJ_G0031886) #19	Pcp2 (MGP_SPRETEiJ_G0031885) #20	Pet100 (MGP_SPRETEiJ_G0031884) #21	Xab2 (MGP_SPRETEiJ_G0031883) #22	Camsap3 (MGP_SPRETEiJ_G0031882) #23	Pnpla6 (MGP_SPRETEiJ_G0031880) #24	Mcoln1 (MGP_SPRETEiJ_G0031879) #25	Zfp358 (MGP_SPRETEiJ_G0031878) #26	Tex45 (MGP_SPRETEiJ_G0031877) #27	Pex11g (MGP_SPRETEiJ_G0031876) #28	MGP_SPRETEiJ_G0031875 #29	MGP_SPRETEiJ_G0031874 #30	Insr (MGP_SPRETEiJ_G0031873) #31
Steppe mouse	MODERN SPECIES	2640				Cd209e (ENSMSIG00000011003) ##11	ENSMSIG00000010983	Cd209a (ENSMSIG00000010842) #13	Clec4g (ENSMSIG00000010826) #14	Fcer2a (ENSMSIG00000009772) #15	Trappc5 (ENSMSIG00000009751) #16	Fcor (ENSMSIG00000009739)	Mcemp1 (ENSMSIG00000009728) #17	Retn (ENSMSIG00000009715) #18	Stxbp2 (ENSMSIG00000009635) #19	Pcp2 (ENSMSIG00000009514) #20	Pet100 (ENSMSIG00000009482) #21	Xab2 (ENSMSIG00000009409) #22	Camsap3 (ENSMSIG00000008616) #23	Pnpla6 (ENSMSIG00000007864) #24	Mcoln1 (ENSMSIG00000007828) #25	Zfp358 (ENSMSIG00000007815) #26	Tex45 (ENSMSIG00000007810) #27	Pex11g (ENSMSIG00000007747) #28	Arhgef18 (ENSMSIG00000007534) #29	Insr (ENSMSIG00000007338) #31
Mouse	MODERN SPECIES	17	Cd209f (ENSMUSG00000051906) ##9	Cd209c (ENSMUSG00000040165) ##11	Cd209b (ENSMUSG00000065987) #11	Cd209d (ENSMUSG00000031495) #12	Cd209e (ENSMUSG00000040197) ##11	Cd209a (ENSMUSG00000031494) #13	Clec4g (ENSMUSG00000074491) #14	Fcer2a (ENSMUSG00000005540) #15	Trappc5 (ENSMUSG00000040236) #16	Fcor (ENSMUSG00000089665)	Mcemp1 (ENSMUSG00000013974) #17	Retn (ENSMUSG00000012705) #18	Stxbp2 (ENSMUSG00000004626) #19	Pcp2 (ENSMUSG00000004630) #20	Pet100 (ENSMUSG00000087687) #21	Xab2 (ENSMUSG00000019470) #22	Camsap3 (ENSMUSG00000044433) #23	Rps23rg1 (ENSMUSG00000065952)	Pnpla6 (ENSMUSG00000004565) #24	Mcoln1 (ENSMUSG00000004567) #25	Zfp358 (ENSMUSG00000047264) #26	Tex45 (ENSMUSG00000040340) #27	Pex11g (ENSMUSG00000069633) #28	Arhgef18 (ENSMUSG00000004568) #29	Insr (ENSMUSG00000005534) #31