Bovidae	ANCESTRAL SPECIES		ENSGT00390000017407	ENSGT00530000063861.a	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b	ENSGT00940000161836	ENSGT00940000162574	ENSGT00390000000976	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025 #21	ENSGT00390000016884	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31	ENSGT00730000111029.e.b #32	ENSGT00950000183005.b.c.b.`b	ENSGT00940000160844 #33	ENSGT00940000154431.e.a.a.b.a.c #34	ENSGT00390000016735 #35	ENSGT00390000000053 #36
Caprinae	ANCESTRAL SPECIES	3	ENSGT00940000154412.C	ENSGT00390000017407	ENSGT00530000063861.a	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b	ENSGT00940000161836	ENSGT00940000162574	ENSGT00390000000976	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025 #21	ENSGT00390000016884	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31	ENSGT00940000154431.e.a.a.a.a.b ##34	ENSGT00730000111029.e.b #32	ENSGT00950000183005.b.c.b.`b	ENSGT00940000160844 #33	ENSGT00940000154431.e.a.a.b.a.c #34	ENSGT00390000016735 #35
Goat	MODERN SPECIES	26	PRKACA (ENSCHIG00000016501) #7	ENSCHIG00000016998 #8	ADGRL1 (ENSCHIG00000025611) #9	ADGRE5 (ENSCHIG00000010425) #10	DDX39A (ENSCHIG00000019059) #11	PTGER1 (ENSCHIG00000024064) #12	PKN1 (ENSCHIG00000009176) #13	GIPC1 (ENSCHIG00000016305) #14	ENSCHIG00000023424 #15	NDUFB7 (ENSCHIG00000013480) #16	TECR (ENSCHIG00000020365) #17	ADGRE3 (ENSCHIG00000027221) #18	ZNF333 (ENSCHIG00000014600) #19	ENSCHIG00000020226 #20	ENSCHIG00000025309 #21	XAB2 (ENSCHIG00000011512) #22	CAMSAP3 (ENSCHIG00000006791) #23	PNPLA6 (ENSCHIG00000012296) #24	MCOLN1 (ENSCHIG00000004859) #25	ZNF358 (ENSCHIG00000009326) #26	TEX45 (ENSCHIG00000021310) #27	PEX11G (ENSCHIG00000008993) #28	ARHGEF18 (ENSCHIG00000014970) #29	ENSCHIG00000013820 #30	INSR (ENSCHIG00000014171) #31	ENSCHIG00000019523 #32	ZNF558 (ENSCHIG00000025659) #33	ENSCHIG00000026095 #34	ACP5 (ENSCHIG00000014322) #35	ELOF1 (ENSCHIG00000012527) #36	CNN1 (ENSCHIG00000019758) #37
Rambouillet Sheep	MODERN SPECIES	21	CTXN1 (ENSOARG00020010824)	SNAPC2 (ENSOARG00020010765)	TGFBR3L (ENSOARG00020010674)	MAP2K7 (ENSOARG00020010429)	LRRC8E (ENSOARG00020010408)	EVI5L (ENSOARG00020010122)	ENSOARG00020010029	ENSOARG00020009935	ENSOARG00020009851	ENSOARG00020009809	ENSOARG00020009725	RETN (ENSOARG00020009710)	STXBP2 (ENSOARG00020009628)	PCP2 (ENSOARG00020009522) #21	PET100 (ENSOARG00020009496)	XAB2 (ENSOARG00020009413) #22	PNPLA6 (ENSOARG00020008560) #24	MCOLN1 (ENSOARG00020008470) #25	ZNF358 (ENSOARG00020008446) #26	TEX45 (ENSOARG00020008365) #27	PEX11G (ENSOARG00020008293) #28	ARHGEF18 (ENSOARG00020008034) #29	INSR (ENSOARG00020007624) #31	ENSOARG00020007582	ZNF558 (ENSOARG00020007505) #33	ACP5 (ENSOARG00020007452) #35	ELOF1 (ENSOARG00020007341) #36	CNN1 (ENSOARG00020007271) #37	ECSIT (ENSOARG00020007078)	ZNF653 (ENSOARG00020006974)	ELAVL3 (ENSOARG00020006849)
Bovinae	ANCESTRAL SPECIES	2	ENSGT00940000154412.C	ENSGT00390000017407	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b	ENSGT00940000161836	ENSGT00940000162574	ENSGT00390000000976	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025 #21	ENSGT00390000016884	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31	ENSGT00950000183005.b.c.b.`b	ENSGT00730000111029.e.b #32	ENSGT00940000160844 #33	ENSGT00950000183069.b	ENSGT00940000154431.e.a.a.b.a.c #34	ENSGT00390000016735 #35
Bos	ANCESTRAL SPECIES	3	ENSGT00940000154412.C	ENSGT00390000017407	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b	ENSGT00940000161836	ENSGT00940000162574	ENSGT00390000000976	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025 #21	ENSGT00390000016884.c.a	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31	ENSGT00950000183005.b.c.b.`b	ENSGT00730000111029.e.b #32	ENSGT00940000160844 #33	ENSGT00940000154431.e.a.a.b.a.c #34	ENSGT00390000016735 #35	ENSGT00390000000053 #36
Bos_b	ANCESTRAL SPECIES	2	ENSGT00390000000051	ENSGT00390000017407	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000154382.a.a	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b	ENSGT00940000161836	ENSGT00940000162574	ENSGT00390000000976	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025 #21	ENSGT00390000016884.c.a	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000155404 #31	ENSGT00950000183005.b.c.b.`b	ENSGT00730000111029.e.b #32	ENSGT00940000160844 #33	ENSGT00940000154431.e.a.a.b.a.c #34	ENSGT00390000016735 #35	ENSGT00390000000053 #36	ENSGT00940000159680 #37
Cow	MODERN SPECIES	26	TIMM44 (ENSBTAG00000015567)	SNAPC2 (ENSBTAG00000014926)	MAP2K7 (ENSBTAG00000010639)	LRRC8E (ENSBTAG00000004300)	PRR36 (ENSBTAG00000044018)	EVI5L (ENSBTAG00000004294)	CD209 (ENSBTAG00000007312)	CLEC4G (ENSBTAG00000013429)	FCER2 (ENSBTAG00000004270)	TRAPPC5 (ENSBTAG00000004268)	MCEMP1 (ENSBTAG00000004714)	RETN (ENSBTAG00000004716)	STXBP2 (ENSBTAG00000009178)	PCP2 (ENSBTAG00000008906) #21	PET100 (ENSBTAG00000048824)	XAB2 (ENSBTAG00000011360) #22	CAMSAP3 (ENSBTAG00000011356) #23	PNPLA6 (ENSBTAG00000032137) #24	MCOLN1 (ENSBTAG00000005592) #25	ZNF358 (ENSBTAG00000046837) #26	TEX45 (ENSBTAG00000002629) #27	PEX11G (ENSBTAG00000018894) #28	ARHGEF18 (ENSBTAG00000040507) #29	INSR (ENSBTAG00000012687) #31	ENSBTAG00000047612	ENSBTAG00000046336 #32	ZNF557 (ENSBTAG00000030929) #33	ENSBTAG00000038680 #34	ACP5 (ENSBTAG00000004826) #35	ELOF1 (ENSBTAG00000038151) #36	CNN1 (ENSBTAG00000011207) #37
Hybrid Bos Indicus	MODERN SPECIES	26	TIMM44 (ENSBIXG00005009674)	SNAPC2 (ENSBIXG00005009650)	MAP2K7 (ENSBIXG00005009621)	LRRC8E (ENSBIXG00005009576)	PRR36 (ENSBIXG00005009562)	EVI5L (ENSBIXG00005009531)	ENSBIXG00005009471	CLEC4G (ENSBIXG00005009451)	ENSBIXG00005009437	TRAPPC5 (ENSBIXG00005009421)	ENSBIXG00005009407	ENSBIXG00005009395	STXBP2 (ENSBIXG00005009382)	ENSBIXG00005009355	PCP2 (ENSBIXG00005009330) #21	XAB2 (ENSBIXG00005009311) #22	CAMSAP3 (ENSBIXG00005000457) #23	PNPLA6 (ENSBIXG00005009237) #24	MCOLN1 (ENSBIXG00005009077) #25	ZNF358 (ENSBIXG00005000371) #26	TEX45 (ENSBIXG00005005271) #27	PEX11G (ENSBIXG00005001595) #28	ARHGEF18 (ENSBIXG00005029209) #29	INSR (ENSBIXG00005001709) #31	ENSBIXG00005001771	ENSBIXG00005001780 #32	ZNF558 (ENSBIXG00005001808) #33	ENSBIXG00005029129 #34	ACP5 (ENSBIXG00005029121) #35	ENSBIXG00005005151 #36	CNN1 (ENSBIXG00005005140) #37
Bos_a	ANCESTRAL SPECIES	2	ENSGT00390000000051	ENSGT00940000154412.C	ENSGT00390000017407	ENSGT00940000158914	ENSGT00940000159311.c	ENSGT00940000153846.a.b	ENSGT00940000162906.c.b	ENSGT00940000161836	ENSGT00940000162574	ENSGT00390000000976	ENSGT00390000007959	ENSGT00390000016177.e	ENSGT00940000160045	ENSGT00940000162025 #21	ENSGT00390000016884.c.a	ENSGT00550000075140 #22	ENSGT00950000182975.a.b #23	ENSGT00940000159130 #24	ENSGT00950000183036.b #25	ENSGT00940000162948 #26	ENSGT00390000014215 #27	ENSGT00390000000427 #28	ENSGT00940000157375 #29	ENSGT00940000154146.b.b.b #30	ENSGT00940000155404 #31	ENSGT00950000183005.b.c.b.`b	ENSGT00730000111029.e.b #32	ENSGT00940000160844 #33	ENSGT00940000154431.e.a.a.b.a.c #34	ENSGT00390000016735 #35	ENSGT00390000000053 #36
Wild yak	MODERN SPECIES	347		TIMM44 (ENSBMUG00000025883)	CTXN1 (ENSBMUG00000025886)	SNAPC2 (ENSBMUG00000025888)	MAP2K7 (ENSBMUG00000025905)	LRRC8E (ENSBMUG00000025915)	EVI5L (ENSBMUG00000025959)	ENSBMUG00000025972	CLEC4G (ENSBMUG00000025975)	ENSBMUG00000025977	ENSBMUG00000025982	RETN (ENSBMUG00000025984)	STXBP2 (ENSBMUG00000025989)	PCP2 (ENSBMUG00000025992) #21	ENSBMUG00000025997	XAB2 (ENSBMUG00000025998) #22	ENSBMUG00000026000 #23	PNPLA6 (ENSBMUG00000026008) #24	MCOLN1 (ENSBMUG00000026020) #25	ENSBMUG00000026024 #26	ENSBMUG00000026027 #27	PEX11G (ENSBMUG00000026029) #28	ARHGEF18 (ENSBMUG00000026030) #29	ENSBMUG00000026032 #30	INSR (ENSBMUG00000026033) #31	ENSBMUG00000026035	ENSBMUG00000026036 #32	ZNF558 (ENSBMUG00000026040) #33	ENSBMUG00000026043	ENSBMUG00000026045 #34	ENSBMUG00000026048
Domestic yak	MODERN SPECIES	27	TIMM44 (ENSBGRG00000020570)	CTXN1 (ENSBGRG00000020556)	SNAPC2 (ENSBGRG00000020523)	MAP2K7 (ENSBGRG00000020311)	LRRC8E (ENSBGRG00000020268)	EVI5L (ENSBGRG00000019640)	ENSBGRG00000019544	CLEC4G (ENSBGRG00000019306)	FCER2 (ENSBGRG00000019117)	TRAPPC5 (ENSBGRG00000019065)	ENSBGRG00000018955	ENSBGRG00000018862	STXBP2 (ENSBGRG00000018414)	PCP2 (ENSBGRG00000018290) #21	ENSBGRG00000018074	XAB2 (ENSBGRG00000017678) #22	ENSBGRG00000017610 #23	ENSBGRG00000017526 #23	PNPLA6 (ENSBGRG00000016196) #24	MCOLN1 (ENSBGRG00000015800) #25	ZNF358 (ENSBGRG00000015732) #26	TEX45 (ENSBGRG00000015591) #27	PEX11G (ENSBGRG00000015477) #28	ARHGEF18 (ENSBGRG00000014851) #29	INSR (ENSBGRG00000014314) #31	ENSBGRG00000014264	ENSBGRG00000014240 #32	ZNF558 (ENSBGRG00000014085) #33	ENSBGRG00000014054 #34	ACP5 (ENSBGRG00000013885) #35	ELOF1 (ENSBGRG00000013781) #36
American bison	MODERN SPECIES	3349	ELAVL1 (ENSBBBG00000019214)	TIMM44 (ENSBBBG00000004941)	CTXN1 (ENSBBBG00000019174)	SNAPC2 (ENSBBBG00000019170)	MAP2K7 (ENSBBBG00000019142)	LRRC8E (ENSBBBG00000019097)	EVI5L (ENSBBBG00000019083)	ENSBBBG00000004868	CLEC4G (ENSBBBG00000019038)	FCER2 (ENSBBBG00000004855)	ENSBBBG00000018964	RETN (ENSBBBG00000018950)	STXBP2 (ENSBBBG00000018941)	PCP2 (ENSBBBG00000004777) #21	PET100 (ENSBBBG00000018886)	XAB2 (ENSBBBG00000018857) #22	CAMSAP3 (ENSBBBG00000004734) #23	PNPLA6 (ENSBBBG00000018732) #24	MCOLN1 (ENSBBBG00000004511) #25	ZNF358 (ENSBBBG00000004503) #26	TEX45 (ENSBBBG00000004501) #27	PEX11G (ENSBBBG00000018399) #28	ARHGEF18 (ENSBBBG00000004493) #29	INSR (ENSBBBG00000018333) #31	ENSBBBG00000018257	ENSBBBG00000018240 #32	ZNF558 (ENSBBBG00000008764) #33	ENSBBBG00000018189	ENSBBBG00000004463 #34	ACP5 (ENSBBBG00000018149) #35	ELOF1 (ENSBBBG00000018120) #36