Gnathostomata	DUPLICATION
Gnathostomata	ANCESTRAL SPECIES	1074														ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22
Euteleostomi	ANCESTRAL SPECIES	902														ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22
Sarcopterygii	ANCESTRAL SPECIES	140										ENSGT00940000154786 #32	ENSGT00940000156263 #19	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297
Tetrapoda	ANCESTRAL SPECIES	26	ENSGT00940000155224	ENSGT00940000155489.b	ENSGT00940000155440.d	ENSGT00940000159366	ENSGT00940000154409 #36	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000158200 #34	ENSGT00940000165418	ENSGT00940000154786 #32	ENSGT00940000156263 #19	ENSGT00960000186993	ENSGT00940000161971 #18	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00950000185411	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154276	ENSGT01020000230359.E	ENSGT00940000153709.B	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293
Amniota	ANCESTRAL SPECIES	30													ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b
Mammalia	ANCESTRAL SPECIES	31													ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000158313
Theria	ANCESTRAL SPECIES	2	ENSGT00940000161838	ENSGT00940000154026.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000158313
Eutheria	ANCESTRAL SPECIES	1	ENSGT00940000154026.b.b	ENSGT00940000163840	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Boreoeutheria	ANCESTRAL SPECIES	6	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Euarchontoglires	ANCESTRAL SPECIES	6	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Euarchontoglires_A	ANCESTRAL SPECIES	5	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Glires	ANCESTRAL SPECIES	4	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Rodentia	ANCESTRAL SPECIES	5	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Rodentia_B	ANCESTRAL SPECIES	3	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Kangaroo rat	MODERN SPECIES	361						Atg101 (ENSDORG00000000193) #12	Nr4a1 (ENSDORG00000000196) #13	Tamalin (ENSDORG00000000198) #14	Acvr1b (ENSDORG00000023410) #15	Acvrl1 (ENSDORG00000016137) #16	Ankrd33 (ENSDORG00000015050) #17	Fignl2 (ENSDORG00000029523) #18	Scn8a (ENSDORG00000016310) #19	Slc4a8 (ENSDORG00000011277) #20	Galnt6 (ENSDORG00000015297) #21	Cela1 (ENSDORG00000010121) #22	ENSDORG00000025542 #23	Smagp (ENSDORG00000027416) #24	Dazap2 (ENSDORG00000028740) #25	ENSDORG00000014216 #26	Tfcp2 (ENSDORG00000014214) #27	Csrnp2 (ENSDORG00000026384) #28	Letmd1 (ENSDORG00000010376) #29	Slc11a2 (ENSDORG00000008507) #30	Higd1c (ENSDORG00000015929) #31	ENSDORG00000026920 #32	Tmprss12 (ENSDORG00000004652) #33	Atf1 (ENSDORG00000007920) #34	Dip2b (ENSDORG00000007913) #35	Larp4 (ENSDORG00000004013) #36	ENSDORG00000028650 #37
Myomorpha	ANCESTRAL SPECIES	2	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Lesser Egyptian jerboa	MODERN SPECIES	42	Krt86 (ENSJJAG00000000421)	Krt88 (ENSJJAG00000010390)	ENSJJAG00000023753	Krt7 (ENSJJAG00000020988)	Krt80 (ENSJJAG00000023976)	ENSJJAG00000024407 #12	Nr4a1 (ENSJJAG00000016904) #13	Tamalin (ENSJJAG00000022890) #14	Acvr1b (ENSJJAG00000014447) #15	Acvrl1 (ENSJJAG00000013658) #16	Ankrd33 (ENSJJAG00000018769) #17	Fignl2 (ENSJJAG00000024263) #18	Scn8a (ENSJJAG00000018047) #19	Slc4a8 (ENSJJAG00000016335) #20	Galnt6 (ENSJJAG00000017457) #21	Cela1 (ENSJJAG00000000473) #22	ENSJJAG00000021830	ENSJJAG00000021573 #24	Dazap2 (ENSJJAG00000019705) #25	ENSJJAG00000012793 #26	Tfcp2 (ENSJJAG00000019094) #27	Csrnp2 (ENSJJAG00000017839) #28	Letmd1 (ENSJJAG00000022897) #29	Slc11a2 (ENSJJAG00000024107) #30	Dip2b (ENSJJAG00000010269) #35	ENSJJAG00000014649 #36	ENSJJAG00000001889 #37	Lima1 (ENSJJAG00000012969)	Cers5 (ENSJJAG00000023418)	Gpd1 (ENSJJAG00000021922)	Smarcd1 (ENSJJAG00000015550)
Muroidea	ANCESTRAL SPECIES	31	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Upper Galilee mountains blind mole rat	MODERN SPECIES	1085	Krt86 (ENSNGAG00000017163)	ENSNGAG00000005068	Krt88 (ENSNGAG00000004487)	ENSNGAG00000007208	Krt7 (ENSNGAG00000017851)	Krt80 (ENSNGAG00000001358)	Atg101 (ENSNGAG00000008730) #12	Nr4a1 (ENSNGAG00000010882) #13	Tamalin (ENSNGAG00000012612) #14	Acvr1b (ENSNGAG00000015960) #15	Acvrl1 (ENSNGAG00000010548) #16	Fignl2 (ENSNGAG00000017152) #18	Scn8a (ENSNGAG00000016029) #19	Slc4a8 (ENSNGAG00000006794) #20	Galnt6 (ENSNGAG00000016732) #21	Cela1 (ENSNGAG00000017285) #22	ENSNGAG00000020286 #23	Smagp (ENSNGAG00000000376) #24	ENSNGAG00000017751 #25	ENSNGAG00000018732 #26
Muroidea_A	ANCESTRAL SPECIES	9	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Cricetidae	ANCESTRAL SPECIES	10	ENSGT00940000163840	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT01100000263763 #37
Cricetinae	ANCESTRAL SPECIES	3	ENSGT00940000163840	ENSGT00940000154026.b.b.h.j.a.a.a.d	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT01100000263763 #37
Chinese hamster chok1gshd	MODERN SPECIES	1	Krt7 (ENSCGRG00001013984)	Krt80 (ENSCGRG00001011354)	Smim41 (ENSCGRG00001010569)	Atg101 (ENSCGRG00001014001) #12	Nr4a1 (ENSCGRG00001010137) #13	Tamalin (ENSCGRG00001010528) #14	Acvr1b (ENSCGRG00001010042) #15	Acvrl1 (ENSCGRG00001008709) #16	Ankrd33 (ENSCGRG00001009979) #17	Fignl2 (ENSCGRG00001014354) #18	Scn8a (ENSCGRG00001009449) #19	ENSCGRG00001010025	Slc4a8 (ENSCGRG00001010231) #20	ENSCGRG00001008676	Galnt6 (ENSCGRG00001017217) #21	Cela1 (ENSCGRG00001008968) #22	Bin2 (ENSCGRG00001011293) #23	Smagp (ENSCGRG00001008288) #24	Dazap2 (ENSCGRG00001011800) #25	Pou6f1 (ENSCGRG00001007665) #26	Tfcp2 (ENSCGRG00001011720) #27	Csrnp2 (ENSCGRG00001010089) #28	Letmd1 (ENSCGRG00001009795) #29	Slc11a2 (ENSCGRG00001010015) #30	Higd1c (ENSCGRG00001015030) #31	ENSCGRG00001007240 #32	Tmprss12 (ENSCGRG00001011685) #33	Atf1 (ENSCGRG00001010893) #34	Dip2b (ENSCGRG00001013289) #35	ENSCGRG00001010818 #36	ENSCGRG00001007279 #37
Golden Hamster	MODERN SPECIES	626	Krt90 (ENSMAUG00000015296)	Gm49425 (ENSMAUG00000016465)	ENSMAUG00000015934	Krt7 (ENSMAUG00000015329)	Krt80 (ENSMAUG00000016060)	Atg101 (ENSMAUG00000015953) #12	Nr4a1 (ENSMAUG00000013627) #13	Tamalin (ENSMAUG00000012900) #14	Acvr1b (ENSMAUG00000012504) #15	Acvrl1 (ENSMAUG00000012242) #16	Ankrd33 (ENSMAUG00000019783) #17	Fignl2 (ENSMAUG00000019750) #18	Scn8a (ENSMAUG00000018217) #19	Slc4a8 (ENSMAUG00000013884) #20	Galnt6 (ENSMAUG00000015859) #21	Cela1 (ENSMAUG00000015360) #22	Bin2 (ENSMAUG00000014037) #23	Smagp (ENSMAUG00000013509) #24	Dazap2 (ENSMAUG00000019659) #25	Pou6f1 (ENSMAUG00000019512) #26	Tfcp2 (ENSMAUG00000015118) #27	Csrnp2 (ENSMAUG00000013590) #28	Letmd1 (ENSMAUG00000012925) #29	Slc11a2 (ENSMAUG00000015999) #30	Higd1c (ENSMAUG00000015723) #31	ENSMAUG00000010677	ENSMAUG00000021530 #32	Tmprss12 (ENSMAUG00000021386) #33	Atf1 (ENSMAUG00000019644) #34	Dip2b (ENSMAUG00000016394) #35	Larp4 (ENSMAUG00000012844) #36
Cricetidae_B	ANCESTRAL SPECIES	6	ENSGT00940000163840	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT01100000263763 #37
Northern American deer mouse	MODERN SPECIES	12	ENSPEMG00000006830	Krt88 (ENSPEMG00000004100)	Krt87 (ENSPEMG00000009186)	Krt7 (ENSPEMG00000018537)	Krt80 (ENSPEMG00000015075)	Smim41 (ENSPEMG00000028854)	Atg101 (ENSPEMG00000018832) #12	Nr4a1 (ENSPEMG00000003687) #13	Tamalin (ENSPEMG00000010552) #14	Acvr1b (ENSPEMG00000017524) #15	Acvrl1 (ENSPEMG00000012111) #16	Ankrd33 (ENSPEMG00000017441) #17	Scn8a (ENSPEMG00000014356) #19	Slc4a8 (ENSPEMG00000008745) #20	Galnt6 (ENSPEMG00000013303) #21	Cela1 (ENSPEMG00000008958) #22	Bin2 (ENSPEMG00000012754) #23	Smagp (ENSPEMG00000016473) #24	Dazap2 (ENSPEMG00000025018) #25	Pou6f1 (ENSPEMG00000015011) #26	Tfcp2 (ENSPEMG00000014408) #27	Csrnp2 (ENSPEMG00000011851) #28	Letmd1 (ENSPEMG00000012384) #29	Slc11a2 (ENSPEMG00000014236) #30	Higd1c (ENSPEMG00000018206) #31	ENSPEMG00000013499 #32	Tmprss12 (ENSPEMG00000016972) #33	Atf1 (ENSPEMG00000030876) #34	Dip2b (ENSPEMG00000000780) #35	Larp4 (ENSPEMG00000018433) #36	ENSPEMG00000011861 #37
Prairie vole	MODERN SPECIES	2	ENSMOCG00000016450	Krt88 (ENSMOCG00000003622)	Krt87 (ENSMOCG00000022123)	Krt7 (ENSMOCG00000008116)	Krt80 (ENSMOCG00000015111)	Atg101 (ENSMOCG00000011747) #12	Nr4a1 (ENSMOCG00000001375) #13	Tamalin (ENSMOCG00000018249) #14	Acvr1b (ENSMOCG00000019776) #15	Acvrl1 (ENSMOCG00000006424) #16	Ankrd33 (ENSMOCG00000022762) #17	Fignl2 (ENSMOCG00000007086) #18	Scn8a (ENSMOCG00000018366) #19	Slc4a8 (ENSMOCG00000018172) #20	Galnt6 (ENSMOCG00000022040) #21	Cela1 (ENSMOCG00000018729) #22	Bin2 (ENSMOCG00000013377) #23	Smagp (ENSMOCG00000016769) #24	Dazap2 (ENSMOCG00000018356) #25	Pou6f1 (ENSMOCG00000015772) #26	Tfcp2 (ENSMOCG00000019400) #27	Csrnp2 (ENSMOCG00000019553) #28	Letmd1 (ENSMOCG00000004211) #29	Slc11a2 (ENSMOCG00000018372) #30	ENSMOCG00000000643 #31	ENSMOCG00000015365 #32	Tmprss12 (ENSMOCG00000020665) #33	Atf1 (ENSMOCG00000004493) #34	Dip2b (ENSMOCG00000016325) #35	Larp4 (ENSMOCG00000020635) #36	ENSMOCG00000018505 #37
Murinae	ANCESTRAL SPECIES	10	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00860000136312	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Mus	ANCESTRAL SPECIES	11	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00860000136312	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Mus_A	ANCESTRAL SPECIES	13	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00860000136312	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.q.b #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Ryukyu mouse	MODERN SPECIES	6	Krt81 (MGP_CAROLIEiJ_G0020313)	Krt88 (MGP_CAROLIEiJ_G0020312)	MGP_CAROLIEiJ_G0020311	Krt7 (MGP_CAROLIEiJ_G0020310)	Krt80 (MGP_CAROLIEiJ_G0020309)	Atg101 (MGP_CAROLIEiJ_G0020308) #12	Nr4a1 (MGP_CAROLIEiJ_G0020307) #13	Tamalin (MGP_CAROLIEiJ_G0020306) #14	Acvr1b (MGP_CAROLIEiJ_G0020305) #15	Acvrl1 (MGP_CAROLIEiJ_G0020304) #16	Ankrd33 (MGP_CAROLIEiJ_G0020303) #17	Fignl2 (MGP_CAROLIEiJ_G0020302) #18	Scn8a (MGP_CAROLIEiJ_G0020301) #19	Slc4a8 (MGP_CAROLIEiJ_G0020300) #20	Galnt6 (MGP_CAROLIEiJ_G0020299) #21	Cela1 (MGP_CAROLIEiJ_G0020298) #22	Bin2 (MGP_CAROLIEiJ_G0020297) #23	Smagp (MGP_CAROLIEiJ_G0020296) #24	Dazap2 (MGP_CAROLIEiJ_G0020295) #25	Pou6f1 (MGP_CAROLIEiJ_G0020294) #26	Tfcp2 (MGP_CAROLIEiJ_G0020293) #27	Csrnp2 (MGP_CAROLIEiJ_G0020292) #28	Letmd1 (MGP_CAROLIEiJ_G0020291) #29	MGP_CAROLIEiJ_G0020290	Slc11a2 (MGP_CAROLIEiJ_G0020289) #30	MGP_CAROLIEiJ_G0020288 #32	MGP_CAROLIEiJ_G0020287 #32	MGP_CAROLIEiJ_G0020286 #32	MGP_CAROLIEiJ_G0020285 #32	MGP_CAROLIEiJ_G0020284 #33	Atf1 (MGP_CAROLIEiJ_G0020283) #34
Mus_B	ANCESTRAL SPECIES	12	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00860000136312	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.q.b #32	ENSGT00940000154786.q.a #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35
Mouse	MODERN SPECIES	6	Krt87 (ENSMUSG00000047641)	Krt7 (ENSMUSG00000023039)	Krt80 (ENSMUSG00000037185)	Smim41 (ENSMUSG00000075408)	Atg101 (ENSMUSG00000037204) #12	Nr4a1 (ENSMUSG00000023034) #13	Tamalin (ENSMUSG00000000531) #14	Acvr1b (ENSMUSG00000000532) #15	Acvrl1 (ENSMUSG00000000530) #16	Ankrd33 (ENSMUSG00000047034) #17	Fignl2 (ENSMUSG00000095440) #18	Tmdd1 (ENSMUSG00000113558)	Scn8a (ENSMUSG00000023033) #19	Slc4a8 (ENSMUSG00000023032) #20	Galnt6 (ENSMUSG00000037280) #21	Cela1 (ENSMUSG00000023031) #22	Bin2 (ENSMUSG00000098112) #23	Smagp (ENSMUSG00000053559) #24	Dazap2 (ENSMUSG00000000346) #25	Pou6f1 (ENSMUSG00000009739) #26	Tfcp2 (ENSMUSG00000009733) #27	Csrnp2 (ENSMUSG00000044636) #28	Letmd1 (ENSMUSG00000037353) #29	Slc11a2 (ENSMUSG00000023030) #30	Higd1c (ENSMUSG00000093550) #31	Mettl7a2 (ENSMUSG00000056487) #32	Methig1 (ENSMUSG00000093789)	Mettl7a3 (ENSMUSG00000058057) #32	Mettl7a1 (ENSMUSG00000054619) #32	Tmprss12 (ENSMUSG00000045631) #33	Atf1 (ENSMUSG00000023027) #34
Mus_C	ANCESTRAL SPECIES	17	ENSGT00940000163840	ENSGT00940000154026.b.b.h.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00860000136312	ENSGT00940000155330 #30	ENSGT00940000154786.r #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.o #36	ENSGT00940000163376
Steppe mouse	MODERN SPECIES	200										Ankrd33 (ENSMSIG00000021619) #17	ENSMSIG00000021610 #18	Tmdd1 (ENSMSIG00000021604)	Scn8a (ENSMSIG00000021532) #19	Slc4a8 (ENSMSIG00000021453) #20	Galnt6 (ENSMSIG00000021390) #21	Cela1 (ENSMSIG00000021359) #22	Bin2 (ENSMSIG00000021261) #23	ENSMSIG00000021218 #24	ENSMSIG00000021203 #25	Pou6f1 (ENSMSIG00000021185) #26	Tfcp2 (ENSMSIG00000021105) #27	Csrnp2 (ENSMSIG00000021085) #28	Letmd1 (ENSMSIG00000021017) #29	ENSMSIG00000021004	Slc11a2 (ENSMSIG00000020938) #30	ENSMSIG00000020934 #32
spretus	MODERN SPECIES	6	MGP_SPRETEiJ_G0021206	Krt88 (MGP_SPRETEiJ_G0021205)	MGP_SPRETEiJ_G0021204	Krt7 (MGP_SPRETEiJ_G0021203)	Krt80 (MGP_SPRETEiJ_G0021202)	Atg101 (MGP_SPRETEiJ_G0021201) #12	Nr4a1 (MGP_SPRETEiJ_G0021200) #13	Tamalin (MGP_SPRETEiJ_G0021199) #14	Acvr1b (MGP_SPRETEiJ_G0021198) #15	Acvrl1 (MGP_SPRETEiJ_G0021197) #16	Ankrd33 (MGP_SPRETEiJ_G0021196) #17	Fignl2 (MGP_SPRETEiJ_G0021195) #18	Scn8a (MGP_SPRETEiJ_G0021194) #19	Slc4a8 (MGP_SPRETEiJ_G0021193) #20	Galnt6 (MGP_SPRETEiJ_G0021192) #21	Cela1 (MGP_SPRETEiJ_G0021191) #22	Bin2 (MGP_SPRETEiJ_G0021190) #23	Smagp (MGP_SPRETEiJ_G0021189) #24	Dazap2 (MGP_SPRETEiJ_G0021188) #25	Pou6f1 (MGP_SPRETEiJ_G0021187) #26	Tfcp2 (MGP_SPRETEiJ_G0021186) #27	Csrnp2 (MGP_SPRETEiJ_G0021185) #28	Letmd1 (MGP_SPRETEiJ_G0021184) #29	MGP_SPRETEiJ_G0021183	Slc11a2 (MGP_SPRETEiJ_G0021182) #30	MGP_SPRETEiJ_G0021181 #32	MGP_SPRETEiJ_G0021180	Tmprss12 (MGP_SPRETEiJ_G0021179) #33	Atf1 (MGP_SPRETEiJ_G0021178) #34	Dip2b (MGP_SPRETEiJ_G0021177) #35	MGP_SPRETEiJ_G0021176 #36
Shrew mouse	MODERN SPECIES	8	MGP_PahariEiJ_G0020314	Krt81 (MGP_PahariEiJ_G0020313)	Krt88 (MGP_PahariEiJ_G0020312)	Krt7 (MGP_PahariEiJ_G0020311)	Krt80 (MGP_PahariEiJ_G0020310)	Atg101 (MGP_PahariEiJ_G0020309) #12	Nr4a1 (MGP_PahariEiJ_G0020308) #13	Tamalin (MGP_PahariEiJ_G0020307) #14	Acvr1b (MGP_PahariEiJ_G0020306) #15	Acvrl1 (MGP_PahariEiJ_G0020305) #16	Ankrd33 (MGP_PahariEiJ_G0020304) #17	Fignl2 (MGP_PahariEiJ_G0020303) #18	Scn8a (MGP_PahariEiJ_G0020302) #19	Slc4a8 (MGP_PahariEiJ_G0020301) #20	Galnt6 (MGP_PahariEiJ_G0020300) #21	Cela1 (MGP_PahariEiJ_G0020299) #22	Bin2 (MGP_PahariEiJ_G0020298) #23	Smagp (MGP_PahariEiJ_G0020297) #24	Dazap2 (MGP_PahariEiJ_G0020296) #25	Pou6f1 (MGP_PahariEiJ_G0020295) #26	Tfcp2 (MGP_PahariEiJ_G0020294) #27	Csrnp2 (MGP_PahariEiJ_G0020293) #28	Letmd1 (MGP_PahariEiJ_G0020292) #29	Slc11a2 (MGP_PahariEiJ_G0020291) #30	MGP_PahariEiJ_G0020290 #32	MGP_PahariEiJ_G0020289 #32	MGP_PahariEiJ_G0020288 #32	Tmprss12 (MGP_PahariEiJ_G0020287) #33	Atf1 (MGP_PahariEiJ_G0020286) #34	Dip2b (MGP_PahariEiJ_G0020285) #35	Larp4 (MGP_PahariEiJ_G0020284) #36
Rodentia_A	ANCESTRAL SPECIES	4	ENSGT00940000163840	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Hystricomorpha	ANCESTRAL SPECIES	9	ENSGT00940000163840	ENSGT00940000154026.b.b.h.f.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000162804 #31	ENSGT00940000155330 #30	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Hystricomorpha_a	ANCESTRAL SPECIES	7	ENSGT00940000154026.b.b.h.f.a.a	ENSGT00940000163840	ENSGT00940000154026.b.b.h.f.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000162804 #31	ENSGT00940000155330 #30	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT01100000263763 #37
Hystricomorpha_b	ANCESTRAL SPECIES	53	ENSGT00940000154026.b.b.h.f.b	ENSGT00940000154026.b.b.h.e	ENSGT00940000163840	ENSGT00940000154026.b.b.h.f.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT01100000263763 #37	ENSGT00940000158313
Degu	MODERN SPECIES	134	ENSODEG00000012560	ENSODEG00000011372	ENSODEG00000012310	KRT7 (ENSODEG00000011780)	KRT80 (ENSODEG00000014114)	ATG101 (ENSODEG00000011080) #12	NR4A1 (ENSODEG00000011353) #13	ENSODEG00000011116	TAMALIN (ENSODEG00000011304) #14	ACVR1B (ENSODEG00000011919) #15	ACVRL1 (ENSODEG00000012774) #16	ENSODEG00000012110	SCN8A (ENSODEG00000011035) #19	SLC4A8 (ENSODEG00000011060) #20	GALNT6 (ENSODEG00000010915) #21	CELA1 (ENSODEG00000012871) #22	ENSODEG00000012421 #23	SMAGP (ENSODEG00000011513) #24	DAZAP2 (ENSODEG00000011237) #25	ENSODEG00000011102 #26	ENSODEG00000010792 #27	CSRNP2 (ENSODEG00000013075) #28	LETMD1 (ENSODEG00000010964) #29	HIGD1C (ENSODEG00000011715) #31	ENSODEG00000011859	ENSODEG00000012543	ENSODEG00000012166	SLC11A2 (ENSODEG00000011252) #30	ENSODEG00000019844	ENSODEG00000011220	METTL7A (ENSODEG00000012146) #32
Long-tailed chinchilla	MODERN SPECIES	254	ENSCLAG00000003832	ENSCLAG00000003577	ENSCLAG00000003145	ENSCLAG00000001560	KRT7 (ENSCLAG00000001185)	KRT80 (ENSCLAG00000001104)	ATG101 (ENSCLAG00000000951) #12	NR4A1 (ENSCLAG00000000908) #13	TAMALIN (ENSCLAG00000001432) #14	ACVR1B (ENSCLAG00000003093) #15	ACVRL1 (ENSCLAG00000000983) #16	ENSCLAG00000000876 #17	SCN8A (ENSCLAG00000001856) #19	SLC4A8 (ENSCLAG00000001794) #20	GALNT6 (ENSCLAG00000001562) #21	CELA1 (ENSCLAG00000001229) #22	ENSCLAG00000000915 #23	SMAGP (ENSCLAG00000000875) #24	DAZAP2 (ENSCLAG00000000857) #25	POU6F1 (ENSCLAG00000000753) #26	TFCP2 (ENSCLAG00000000852) #27	CSRNP2 (ENSCLAG00000000767) #28	LETMD1 (ENSCLAG00000000694) #29	ENSCLAG00000001253 #30	METTL7A (ENSCLAG00000001191) #32	TMPRSS12 (ENSCLAG00000000986) #33	ATF1 (ENSCLAG00000000957) #34	DIP2B (ENSCLAG00000002317) #35	LARP4 (ENSCLAG00000001829) #36	ENSCLAG00000001798 #37	LIMA1 (ENSCLAG00000000738)
Guinea pig	MODERN SPECIES	9	ENSCPOG00000032305	ENSCPOG00000025903	ENSCPOG00000011036	KRT7 (ENSCPOG00000011035)	KRT80 (ENSCPOG00000037905)	ATG101 (ENSCPOG00000015499) #12	NR4A1 (ENSCPOG00000003095) #13	TAMALIN (ENSCPOG00000003092) #14	ACVR1B (ENSCPOG00000001136) #15	ACVRL1 (ENSCPOG00000001660) #16	ANKRD33 (ENSCPOG00000001133) #17	FIGNL2 (ENSCPOG00000019931) #18	SCN8A (ENSCPOG00000015651) #19	SLC4A8 (ENSCPOG00000015647) #20	GALNT6 (ENSCPOG00000013531) #21	CELA1 (ENSCPOG00000004487) #22	ENSCPOG00000012590 #23	ENSCPOG00000036609	SMAGP (ENSCPOG00000033211) #24	DAZAP2 (ENSCPOG00000037749) #25	ENSCPOG00000019712 #26	TFCP2 (ENSCPOG00000007923) #27	CSRNP2 (ENSCPOG00000035299) #28	LETMD1 (ENSCPOG00000007913) #29	HIGD1C (ENSCPOG00000020309) #31	SLC11A2 (ENSCPOG00000039292) #30	METTL7A (ENSCPOG00000031803) #32	TMPRSS12 (ENSCPOG00000023853) #33	ATF1 (ENSCPOG00000033391) #34	DIP2B (ENSCPOG00000012185) #35	LARP4 (ENSCPOG00000020519) #36
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000018893	ENSHGLG00000048359	SMIM41 (ENSHGLG00000036559)	ATG101 (ENSHGLG00000014036) #12	NR4A1 (ENSHGLG00000041656) #13	ENSHGLG00000015174	TAMALIN (ENSHGLG00000035730) #14	ACVR1B (ENSHGLG00000015083) #15	ACVRL1 (ENSHGLG00000017593) #16	FIGNL2 (ENSHGLG00000048205) #18	SCN8A (ENSHGLG00000003852) #19	ENSHGLG00000035439	SLC4A8 (ENSHGLG00000014625) #20	GALNT6 (ENSHGLG00000015114) #21	ENSHGLG00000015575	CELA1 (ENSHGLG00000015740) #22	BIN2 (ENSHGLG00000049230) #23	ENSHGLG00000050761 #24	DAZAP2 (ENSHGLG00000004225) #25	POU6F1 (ENSHGLG00000006104) #26	TFCP2 (ENSHGLG00000006837) #27	CSRNP2 (ENSHGLG00000038318) #28	LETMD1 (ENSHGLG00000035309) #29	HIGD1C (ENSHGLG00000010374) #31	SLC11A2 (ENSHGLG00000015898) #30	ENSHGLG00000015984	METTL7A (ENSHGLG00000007624) #32	ENSHGLG00000033537 #33	ENSHGLG00000003982	ATF1 (ENSHGLG00000044800) #34	ENSHGLG00000035234
Sciuridae	ANCESTRAL SPECIES	15	ENSGT00940000163840	ENSGT00940000154026.b.b.h.g.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.i.a #36	ENSGT00940000163376
Marmotini	ANCESTRAL SPECIES	19	ENSGT00940000163840	ENSGT00940000154026.b.b.h.g.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.x #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.i.a #36	ENSGT00940000163376
Marmotini_b	ANCESTRAL SPECIES	11	ENSGT00940000163840	ENSGT00940000154026.b.b.h.g.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.x #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.i.a #36	ENSGT00940000163376
Arctic ground squirrel	MODERN SPECIES	202	ENSUPAG00010001473	ENSUPAG00010001492	ENSUPAG00010001515	KRT7 (ENSUPAG00010002035)	KRT80 (ENSUPAG00010002062)	SMIM41 (ENSUPAG00010002088)	ATG101 (ENSUPAG00010002091) #12	NR4A1 (ENSUPAG00010002102) #13	TAMALIN (ENSUPAG00010002130) #14	ACVR1B (ENSUPAG00010002146) #15	ACVRL1 (ENSUPAG00010002166) #16	ANKRD33 (ENSUPAG00010002209) #17	SCN8A (ENSUPAG00010002238) #19	SLC4A8 (ENSUPAG00010002963) #20	GALNT6 (ENSUPAG00010003019) #21	CELA1 (ENSUPAG00010003046) #22	BIN2 (ENSUPAG00010003062) #23	SMAGP (ENSUPAG00010003076) #24	DAZAP2 (ENSUPAG00010003086) #25	POU6F1 (ENSUPAG00010003099) #26	TFCP2 (ENSUPAG00010003132) #27	CSRNP2 (ENSUPAG00010003165) #28	LETMD1 (ENSUPAG00010003179) #29	SLC11A2 (ENSUPAG00010003188) #30	HIGD1C (ENSUPAG00010003220) #31
Squirrel	MODERN SPECIES	112	ENSSTOG00000025342	ENSSTOG00000034342	ENSSTOG00000007476	KRT7 (ENSSTOG00000022599)	KRT80 (ENSSTOG00000024405)	ATG101 (ENSSTOG00000000488) #12	NR4A1 (ENSSTOG00000019650) #13	TAMALIN (ENSSTOG00000000486) #14	ACVR1B (ENSSTOG00000000480) #15	ACVRL1 (ENSSTOG00000000477) #16	ENSSTOG00000000474 #17	FIGNL2 (ENSSTOG00000029947) #18	SCN8A (ENSSTOG00000000463) #19	SLC4A8 (ENSSTOG00000000454) #20	GALNT6 (ENSSTOG00000009225) #21	CELA1 (ENSSTOG00000009200) #22	ENSSTOG00000009185 #23	SMAGP (ENSSTOG00000026431) #24	DAZAP2 (ENSSTOG00000027739) #25	POU6F1 (ENSSTOG00000009140) #26	TFCP2 (ENSSTOG00000009123) #27	CSRNP2 (ENSSTOG00000009118) #28	LETMD1 (ENSSTOG00000009107) #29	SLC11A2 (ENSSTOG00000013293) #30	HIGD1C (ENSSTOG00000022352) #31	METTL7A (ENSSTOG00000021095) #32	TMPRSS12 (ENSSTOG00000000180) #33	ATF1 (ENSSTOG00000010742) #34	DIP2B (ENSSTOG00000003833) #35	LARP4 (ENSSTOG00000003553) #36	ENSSTOG00000032900 #37
Alpin marmot	MODERN SPECIES	34	ENSMMMG00000001011	ENSMMMG00000001001	ENSMMMG00000000987	ENSMMMG00000000969	KRT7 (ENSMMMG00000000950)	KRT80 (ENSMMMG00000000902)	SMIM41 (ENSMMMG00000000888)	ATG101 (ENSMMMG00000000874) #12	NR4A1 (ENSMMMG00000000858) #13	ACVR1B (ENSMMMG00000000817) #15	ACVRL1 (ENSMMMG00000000708) #16	ANKRD33 (ENSMMMG00000000684) #17	SCN8A (ENSMMMG00000000177) #19	SLC4A8 (ENSMMMG00000000045) #20	GALNT6 (ENSMMMG00000023362) #21	CELA1 (ENSMMMG00000023359) #22	BIN2 (ENSMMMG00000023357) #23	SMAGP (ENSMMMG00000023352) #24	DAZAP2 (ENSMMMG00000023349) #25	POU6F1 (ENSMMMG00000023342) #26	ENSMMMG00000023332 #27	CSRNP2 (ENSMMMG00000023325) #28	LETMD1 (ENSMMMG00000023321) #29	ENSMMMG00000023319	SLC11A2 (ENSMMMG00000023309) #30	HIGD1C (ENSMMMG00000023308) #31	ENSMMMG00000023306 #32	ENSMMMG00000023303 #32	ENSMMMG00000023301	ENSMMMG00000023296 #32	TMPRSS12 (ENSMMMG00000023294) #33
Eurasian red squirrel	MODERN SPECIES	14	ENSSVLG00005018428	ENSSVLG00005017937	KRT7 (ENSSVLG00005017784)	KRT80 (ENSSVLG00005017723)	SMIM41 (ENSSVLG00005017698)	ATG101 (ENSSVLG00005017654) #12	NR4A1 (ENSSVLG00005017404) #13	TAMALIN (ENSSVLG00005017358) #14	ACVR1B (ENSSVLG00005017260) #15	ACVRL1 (ENSSVLG00005017128) #16	ANKRD33 (ENSSVLG00005017101) #17	ENSSVLG00005016978	SCN8A (ENSSVLG00005015854) #19	SLC4A8 (ENSSVLG00005015276) #20	GALNT6 (ENSSVLG00005015159) #21	CELA1 (ENSSVLG00005015060) #22	ENSSVLG00005014766 #23	ENSSVLG00005014670 #24	DAZAP2 (ENSSVLG00005014506) #25	POU6F1 (ENSSVLG00005014412) #26	TFCP2 (ENSSVLG00005013960) #27	CSRNP2 (ENSSVLG00005013396) #28	LETMD1 (ENSSVLG00005013359) #29	SLC11A2 (ENSSVLG00005012984) #30	HIGD1C (ENSSVLG00005012890) #31	ENSSVLG00005012847 #32	ENSSVLG00005012785 #32	TMPRSS12 (ENSSVLG00005012718) #33	ATF1 (ENSSVLG00005012633) #34	DIP2B (ENSSVLG00005012220) #35	ENSSVLG00005012155
Lagomorpha	ANCESTRAL SPECIES	79	ENSGT00940000154026.b.b.g.b	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33
Pika	MODERN SPECIES	1638														SLC4A8 (ENSOPRG00000002655) #20	GALNT6 (ENSOPRG00000002636) #21	CELA1 (ENSOPRG00000002614) #22
Rabbit	MODERN SPECIES	15	ENSOCUG00000027902	ENSOCUG00000023092	ENSOCUG00000024540	KRT7 (ENSOCUG00000002632)	KRT80 (ENSOCUG00000013920)	SMIM41 (ENSOCUG00000036869)	ATG101 (ENSOCUG00000024797) #12	NR4A1 (ENSOCUG00000011746) #13	TAMALIN (ENSOCUG00000015089) #14	ACVR1B (ENSOCUG00000017934) #15	ACVRL1 (ENSOCUG00000022530) #16	ANKRD33 (ENSOCUG00000015761) #17	SCN8A (ENSOCUG00000011070) #19	SLC4A8 (ENSOCUG00000016152) #20	GALNT6 (ENSOCUG00000016143) #21	CELA1 (ENSOCUG00000008305) #22	BIN2 (ENSOCUG00000008291) #23	SMAGP (ENSOCUG00000021426) #24	DAZAP2 (ENSOCUG00000015348) #25	POU6F1 (ENSOCUG00000013207) #26	ENSOCUG00000021265	TFCP2 (ENSOCUG00000009026) #27	CSRNP2 (ENSOCUG00000009020) #28	LETMD1 (ENSOCUG00000009014) #29	SLC11A2 (ENSOCUG00000007767) #30	HIGD1C (ENSOCUG00000037967) #31	METTL7A (ENSOCUG00000015622) #32	TMPRSS12 (ENSOCUG00000012144) #33	ENSOCUG00000026872 #36	ENSOCUG00000038596	DIP2B (ENSOCUG00000012013) #35
Tree shrew	MODERN SPECIES	3716													ENSTBEG00000012357	SLC4A8 (ENSTBEG00000011458) #20	GALNT6 (ENSTBEG00000011045) #21	CELA1 (ENSTBEG00000010849) #22	BIN2 (ENSTBEG00000010536) #23	ENSTBEG00000010259
Primates	ANCESTRAL SPECIES	6	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Strepsirrhini	ANCESTRAL SPECIES	3	ENSGT00940000154026.b.b.h.b	ENSGT00940000154026.b.b.h.a.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Lemuriformes	ANCESTRAL SPECIES	1	ENSGT00940000154026.b.b.h.b	ENSGT00940000154026.b.b.h.a.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Mouse lemur	MODERN SPECIES	29	ENSMICG00000016867	KRT7 (ENSMICG00000016848)	KRT80 (ENSMICG00000047727)	ATG101 (ENSMICG00000016818) #12	NR4A1 (ENSMICG00000016812) #13	TAMALIN (ENSMICG00000016807) #14	ACVR1B (ENSMICG00000016804) #15	ACVRL1 (ENSMICG00000016800) #16	ANKRD33 (ENSMICG00000016792) #17	FIGNL2 (ENSMICG00000043506) #18	SCN8A (ENSMICG00000016753) #19	SLC4A8 (ENSMICG00000003543) #20	ENSMICG00000046591	ENSMICG00000031065	GALNT6 (ENSMICG00000003536) #21	CELA1 (ENSMICG00000003531) #22	BIN2 (ENSMICG00000003519) #23	ENSMICG00000044390	DAZAP2 (ENSMICG00000003505) #25	SMAGP (ENSMICG00000045772) #24	POU6F1 (ENSMICG00000009560) #26	TFCP2 (ENSMICG00000009544) #27	CSRNP2 (ENSMICG00000043238) #28	LETMD1 (ENSMICG00000009526) #29	ENSMICG00000012880	ENSMICG00000017243 #30	ENSMICG00000017248 #30	HIGD1C (ENSMICG00000044696) #31	METTL7A (ENSMICG00000033526) #32	ENSMICG00000043558	TMPRSS12 (ENSMICG00000014455) #33
Lemuriformes_a	ANCESTRAL SPECIES	8	ENSGT00940000154026.b.b.h.b	ENSGT00940000154026.b.b.h.a.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Greater bamboo lemur	MODERN SPECIES	1512													SCN8A (ENSPSMG00000007228) #19	SLC4A8 (ENSPSMG00000007136) #20	GALNT6 (ENSPSMG00000007061) #21	CELA1 (ENSPSMG00000007043) #22	BIN2 (ENSPSMG00000007032) #23	SMAGP (ENSPSMG00000006996) #24	DAZAP2 (ENSPSMG00000006946) #25
Coquerels sifaka	MODERN SPECIES	91	ENSPCOG00000000787	KRT7 (ENSPCOG00000028334)	KRT80 (ENSPCOG00000015484)	ATG101 (ENSPCOG00000016127) #12	NR4A1 (ENSPCOG00000014159) #13	TAMALIN (ENSPCOG00000024205) #14	ACVR1B (ENSPCOG00000019221) #15	ACVRL1 (ENSPCOG00000023527) #16	ANKRD33 (ENSPCOG00000014468) #17	TMDD1 (ENSPCOG00000026575)	SCN8A (ENSPCOG00000018581) #19	SLC4A8 (ENSPCOG00000017965) #20	ENSPCOG00000024224	ENSPCOG00000020940	GALNT6 (ENSPCOG00000012585) #21	CELA1 (ENSPCOG00000005485) #22	BIN2 (ENSPCOG00000026077) #23	SMAGP (ENSPCOG00000025509) #24	DAZAP2 (ENSPCOG00000028241) #25	POU6F1 (ENSPCOG00000020545) #26	TFCP2 (ENSPCOG00000026562) #27	CSRNP2 (ENSPCOG00000014145) #28	LETMD1 (ENSPCOG00000014754) #29	ENSPCOG00000021473 #30	ENSPCOG00000018158 #30	HIGD1C (ENSPCOG00000025367) #31	METTL7A (ENSPCOG00000024184) #32	ENSPCOG00000020301	TMPRSS12 (ENSPCOG00000014801) #33	ATF1 (ENSPCOG00000025429) #34	DIP2B (ENSPCOG00000019428) #35
Bushbaby	MODERN SPECIES	158	ENSOGAG00000008487	ENSOGAG00000034551	ENSOGAG00000008483	KRT7 (ENSOGAG00000008480)	KRT80 (ENSOGAG00000008475)	ATG101 (ENSOGAG00000016790) #12	NR4A1 (ENSOGAG00000006323) #13	TAMALIN (ENSOGAG00000028388) #14	ACVR1B (ENSOGAG00000029484) #15	ACVRL1 (ENSOGAG00000004094) #16	ANKRD33 (ENSOGAG00000026149) #17	FIGNL2 (ENSOGAG00000032760) #18	SCN8A (ENSOGAG00000005154) #19	SLC4A8 (ENSOGAG00000005151) #20	GALNT6 (ENSOGAG00000008000) #21	CELA1 (ENSOGAG00000007994) #22	BIN2 (ENSOGAG00000007983) #23	SMAGP (ENSOGAG00000030770) #24	DAZAP2 (ENSOGAG00000007977) #25	POU6F1 (ENSOGAG00000007973) #26	TFCP2 (ENSOGAG00000007969) #27	CSRNP2 (ENSOGAG00000007966) #28	LETMD1 (ENSOGAG00000007963) #29	SLC11A2 (ENSOGAG00000000214) #30	ENSOGAG00000000213 #32	ENSOGAG00000009474 #32	TMPRSS12 (ENSOGAG00000034766) #33	ENSOGAG00000000212	ATF1 (ENSOGAG00000026029) #34	DIP2B (ENSOGAG00000005189) #35	LARP4 (ENSOGAG00000001415) #36
Haplorrhini	ANCESTRAL SPECIES	3	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00950000184761	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Tarsier	MODERN SPECIES	4209																CELA1 (ENSTSYG00000033635) #22	BIN2 (ENSTSYG00000004218) #23	SMAGP (ENSTSYG00000005521) #24	DAZAP2 (ENSTSYG00000005505) #25
Simiiformes	ANCESTRAL SPECIES	4	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00940000163376
Platyrrhini	ANCESTRAL SPECIES	6	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.a.a #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00940000163376
Cebidae	ANCESTRAL SPECIES	2	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.a.a #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00940000163376
Cebidae_a	ANCESTRAL SPECIES	5	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.a.a.a #25	ENSGT00390000000685.o.a.a.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Bolivian squirrel monkey	MODERN SPECIES	153	KRT84 (ENSSBOG00000034073)	KRT85 (ENSSBOG00000034269)	KRT81 (ENSSBOG00000020022)	ENSSBOG00000032741	KRT80 (ENSSBOG00000026828)	ATG101 (ENSSBOG00000024668) #12	NR4A1 (ENSSBOG00000023718) #13	TAMALIN (ENSSBOG00000028166) #14	ACVR1B (ENSSBOG00000024866) #15	ACVRL1 (ENSSBOG00000031625) #16	ANKRD33 (ENSSBOG00000024505) #17	FIGNL2 (ENSSBOG00000028090) #18	SCN8A (ENSSBOG00000002583) #19	SLC4A8 (ENSSBOG00000027073) #20	GALNT6 (ENSSBOG00000028997) #21	CELA1 (ENSSBOG00000031080) #22	BIN2 (ENSSBOG00000020090) #23	SMAGP (ENSSBOG00000033517) #24	ENSSBOG00000029344 #25	POU6F1 (ENSSBOG00000022176) #26	TFCP2 (ENSSBOG00000012958) #27	CSRNP2 (ENSSBOG00000020225) #28	LETMD1 (ENSSBOG00000020472) #29	ENSSBOG00000025805	SLC11A2 (ENSSBOG00000029524) #30	ENSSBOG00000026501	METTL7A (ENSSBOG00000023898) #32	TMPRSS12 (ENSSBOG00000031130) #33	ATF1 (ENSSBOG00000021700) #34	DIP2B (ENSSBOG00000021026) #35	LARP4 (ENSSBOG00000026650) #36
Capuchin	MODERN SPECIES	181	KRT7 (ENSCCAG00000036349)	KRT80 (ENSCCAG00000034609)	ATG101 (ENSCCAG00000020499) #12	NR4A1 (ENSCCAG00000036507) #13	TAMALIN (ENSCCAG00000016585) #14	ENSCCAG00000035491	ACVR1B (ENSCCAG00000033985) #15	ACVRL1 (ENSCCAG00000031789) #16	ANKRD33 (ENSCCAG00000037591) #17	ENSCCAG00000001613	FIGNL2 (ENSCCAG00000000947) #18	TMDD1 (ENSCCAG00000029986)	SCN8A (ENSCCAG00000036497) #19	SLC4A8 (ENSCCAG00000020596) #20	GALNT6 (ENSCCAG00000025270) #21	CELA1 (ENSCCAG00000026571) #22	BIN2 (ENSCCAG00000020492) #23	SMAGP (ENSCCAG00000002693) #24	ENSCCAG00000034722 #25	POU6F1 (ENSCCAG00000023239) #26	TFCP2 (ENSCCAG00000035842) #27	CSRNP2 (ENSCCAG00000032771) #28	LETMD1 (ENSCCAG00000001496) #29	SLC11A2 (ENSCCAG00000021047) #30	HIGD1C (ENSCCAG00000030818) #31	METTL7A (ENSCCAG00000033453) #32	ENSCCAG00000025709	TMPRSS12 (ENSCCAG00000031125) #33	ATF1 (ENSCCAG00000026329) #34	DIP2B (ENSCCAG00000033298) #35	LARP4 (ENSCCAG00000024439) #36
Marmoset	MODERN SPECIES	21	KRT83 (ENSCJAG00000081170)	KRT86 (ENSCJAG00000072693)	KRT81 (ENSCJAG00000018005)	KRT7 (ENSCJAG00000017950)	KRT80 (ENSCJAG00000017933)	ATG101 (ENSCJAG00000017929) #12	NR4A1 (ENSCJAG00000017915) #13	ACVR1B (ENSCJAG00000017891) #15	ACVRL1 (ENSCJAG00000017879) #16	SCN8A (ENSCJAG00000017798) #19	ENSCJAG00000017870 #17	FIGNL2 (ENSCJAG00000048512) #18	ENSCJAG00000075738	ENSCJAG00000017737 #20	GALNT6 (ENSCJAG00000017712) #21	CELA1 (ENSCJAG00000017706) #22	BIN2 (ENSCJAG00000017685) #23	ENSCJAG00000073609 #24	ENSCJAG00000055962 #25	POU6F1 (ENSCJAG00000017646) #26	TFCP2 (ENSCJAG00000017599) #27	CSRNP2 (ENSCJAG00000086711) #28	LETMD1 (ENSCJAG00000017564) #29	ENSCJAG00000083028 #30	ENSCJAG00000068487	ENSCJAG00000021689 #30	ENSCJAG00000058293 #31	ENSCJAG00000076104	ENSCJAG00000044461 #32	TMPRSS12 (ENSCJAG00000086687) #33	ENSCJAG00000071793 #31
Mas night monkey	MODERN SPECIES	1031	ENSANAG00000030184	ENSANAG00000025227	KRT7 (ENSANAG00000035873)	KRT80 (ENSANAG00000035254)	ATG101 (ENSANAG00000026779) #12	NR4A1 (ENSANAG00000030507) #13	TAMALIN (ENSANAG00000026856) #14	ENSANAG00000020512	ACVR1B (ENSANAG00000028340) #15	ACVRL1 (ENSANAG00000026806) #16	ENSANAG00000026171 #17	TMDD1 (ENSANAG00000024578)	SCN8A (ENSANAG00000006599) #19	SLC4A8 (ENSANAG00000021984) #20	GALNT6 (ENSANAG00000021745) #21	CELA1 (ENSANAG00000038225) #22	BIN2 (ENSANAG00000034467) #23	SMAGP (ENSANAG00000027762) #24	ENSANAG00000032411 #25	POU6F1 (ENSANAG00000036005) #26	TFCP2 (ENSANAG00000028141) #27	CSRNP2 (ENSANAG00000023553) #28	LETMD1 (ENSANAG00000038355) #29	ENSANAG00000026357
Catarrhini	ANCESTRAL SPECIES	4	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01080000258859	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Hominoidea	ANCESTRAL SPECIES	5	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01080000258859	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Hominidae	ANCESTRAL SPECIES	4	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00940000163376
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	5	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00940000163376
Homo/Pan group	ANCESTRAL SPECIES	6	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00940000163376
Pan	ANCESTRAL SPECIES	4	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000153147.m.a.a.a.a.b.b	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00940000163376
Bonobo	MODERN SPECIES	3	ENSPPAG00000007869	KRT7 (ENSPPAG00000043563)	KRT80 (ENSPPAG00000036766)	ATG101 (ENSPPAG00000027593) #12	NR4A1 (ENSPPAG00000035428) #13	TAMALIN (ENSPPAG00000036142) #14	ACVR1B (ENSPPAG00000036987) #15	ACVRL1 (ENSPPAG00000035573) #16	ENSPPAG00000044036 #17	FIGNL2 (ENSPPAG00000024237) #18	ENSPPAG00000029518	SCN8A (ENSPPAG00000044124) #19	ENSPPAG00000040512	SLC4A8 (ENSPPAG00000032444) #20	GALNT6 (ENSPPAG00000033095) #21	CELA1 (ENSPPAG00000036572) #22	BIN2 (ENSPPAG00000024686) #23	DAZAP2 (ENSPPAG00000041139) #25	SMAGP (ENSPPAG00000042183) #24	POU6F1 (ENSPPAG00000029916) #26	TFCP2 (ENSPPAG00000008309) #27	CSRNP2 (ENSPPAG00000043252) #28	LETMD1 (ENSPPAG00000038763) #29	SLC11A2 (ENSPPAG00000038498) #30	HIGD1C (ENSPPAG00000035023) #31	METTL7A (ENSPPAG00000038196) #32	TMPRSS12 (ENSPPAG00000039011) #33	ATF1 (ENSPPAG00000038540) #34	DIP2B (ENSPPAG00000027672) #35	LARP4 (ENSPPAG00000035100) #36	ENSPPAG00000038991
Chimpanzee	MODERN SPECIES	3	KRT87 (ENSPTRG00000004970)	KRT7 (ENSPTRG00000004969)	KRT80 (ENSPTRG00000004968)	ATG101 (ENSPTRG00000004967) #12	NR4A1 (ENSPTRG00000004966) #13	TAMALIN (ENSPTRG00000004965) #14	ACVR1B (ENSPTRG00000004964) #15	ACVRL1 (ENSPTRG00000004963) #16	ANKRD33 (ENSPTRG00000004961) #17	FIGNL2 (ENSPTRG00000052556) #18	TMDD1 (ENSPTRG00000046967)	SCN8A (ENSPTRG00000004959) #19	ENSPTRG00000045033	SLC4A8 (ENSPTRG00000004957) #20	GALNT6 (ENSPTRG00000004956) #21	CELA1 (ENSPTRG00000004955) #22	BIN2 (ENSPTRG00000004954) #23	DAZAP2 (ENSPTRG00000004952) #25	SMAGP (ENSPTRG00000049002) #24	POU6F1 (ENSPTRG00000004950) #26	TFCP2 (ENSPTRG00000004949) #27	CSRNP2 (ENSPTRG00000004948) #28	LETMD1 (ENSPTRG00000004947) #29	SLC11A2 (ENSPTRG00000004946) #30	HIGD1C (ENSPTRG00000043137) #31	METTL7A (ENSPTRG00000004944) #32	TMPRSS12 (ENSPTRG00000004942) #33	ATF1 (ENSPTRG00000004941) #34	DIP2B (ENSPTRG00000004938) #35	LARP4 (ENSPTRG00000004935) #36	ENSPTRG00000052700
Human	MODERN SPECIES	3	KRT86 (ENSG00000170442)	KRT7 (ENSG00000135480)	KRT80 (ENSG00000167767)	SMIM41 (ENSG00000284791)	ATG101 (ENSG00000123395) #12	NR4A1 (ENSG00000123358) #13	TAMALIN (ENSG00000161835) #14	ACVR1B (ENSG00000135503) #15	ACVRL1 (ENSG00000139567) #16	ANKRD33 (ENSG00000167612) #17	FIGNL2 (ENSG00000261308) #18	TMDD1 (ENSG00000284730)	SCN8A (ENSG00000196876) #19	SLC4A8 (ENSG00000050438) #20	GALNT6 (ENSG00000139629) #21	CELA1 (ENSG00000139610) #22	BIN2 (ENSG00000110934) #23	SMAGP (ENSG00000170545) #24	DAZAP2 (ENSG00000183283) #25	POU6F1 (ENSG00000184271) #26	TFCP2 (ENSG00000135457) #27	CSRNP2 (ENSG00000110925) #28	LETMD1 (ENSG00000050426) #29	SLC11A2 (ENSG00000110911) #30	HIGD1C (ENSG00000214511) #31	METTL7A (ENSG00000185432) #32	TMPRSS12 (ENSG00000186452) #33	ATF1 (ENSG00000123268) #34	DIP2B (ENSG00000066084) #35	LARP4 (ENSG00000161813) #36	FAM186A (ENSG00000185958)
Gorilla	MODERN SPECIES	3	KRT83 (ENSGGOG00000002785)	KRT81 (ENSGGOG00000016301)	ENSGGOG00000006602	KRT7 (ENSGGOG00000006599)	KRT80 (ENSGGOG00000006594)	ATG101 (ENSGGOG00000006423) #12	NR4A1 (ENSGGOG00000006418) #13	TAMALIN (ENSGGOG00000006413) #14	ACVR1B (ENSGGOG00000006405) #15	ACVRL1 (ENSGGOG00000006661) #16	ANKRD33 (ENSGGOG00000006656) #17	FIGNL2 (ENSGGOG00000038213) #18	SCN8A (ENSGGOG00000009177) #19	SLC4A8 (ENSGGOG00000012298) #20	GALNT6 (ENSGGOG00000009442) #21	CELA1 (ENSGGOG00000009434) #22	BIN2 (ENSGGOG00000009423) #23	DAZAP2 (ENSGGOG00000026861) #25	SMAGP (ENSGGOG00000006815) #24	POU6F1 (ENSGGOG00000000227) #26	ENSGGOG00000023546 #27	CSRNP2 (ENSGGOG00000010425) #28	LETMD1 (ENSGGOG00000012094) #29	SLC11A2 (ENSGGOG00000008973) #30	HIGD1C (ENSGGOG00000012313) #31	METTL7A (ENSGGOG00000037230) #32	TMPRSS12 (ENSGGOG00000004170) #33	ATF1 (ENSGGOG00000038474) #34	DIP2B (ENSGGOG00000004319) #35	LARP4 (ENSGGOG00000015230) #36	FAM186A (ENSGGOG00000016543)
Orangutan	MODERN SPECIES	3	KRT7 (ENSPPYG00000004540)	KRT80 (ENSPPYG00000004539)	SMIM41 (ENSPPYG00000040144)	ATG101 (ENSPPYG00000004538) #12	NR4A1 (ENSPPYG00000004537) #13	TAMALIN (ENSPPYG00000004536) #14	ACVR1B (ENSPPYG00000004535) #15	ACVRL1 (ENSPPYG00000004534) #16	ANKRD33 (ENSPPYG00000004533) #17	FIGNL2 (ENSPPYG00000041221) #18	TMDD1 (ENSPPYG00000033426)	ENSPPYG00000001326	SCN8A (ENSPPYG00000004530) #19	SLC4A8 (ENSPPYG00000004529) #20	GALNT6 (ENSPPYG00000004528) #21	CELA1 (ENSPPYG00000004527) #22	BIN2 (ENSPPYG00000004526) #23	ENSPPYG00000004525 #24	DAZAP2 (ENSPPYG00000004524) #25	POU6F1 (ENSPPYG00000004523) #26	ENSPPYG00000032849	TFCP2 (ENSPPYG00000004522) #27	CSRNP2 (ENSPPYG00000004521) #28	LETMD1 (ENSPPYG00000004520) #29	SLC11A2 (ENSPPYG00000004519) #30	ENSPPYG00000038364 #32	TMPRSS12 (ENSPPYG00000004516) #33	ATF1 (ENSPPYG00000004515) #34	DIP2B (ENSPPYG00000004514) #35	LARP4 (ENSPPYG00000004512) #36	ENSPPYG00000033639
Gibbon	MODERN SPECIES	23									ENSNLEG00000017764 #14	ACVR1B (ENSNLEG00000017765) #15	ACVRL1 (ENSNLEG00000017766) #16	ANKRD33 (ENSNLEG00000017768) #17	SCN8A (ENSNLEG00000017770) #19	SLC4A8 (ENSNLEG00000017771) #20	GALNT6 (ENSNLEG00000017772) #21	CELA1 (ENSNLEG00000017773) #22	BIN2 (ENSNLEG00000017774) #23	DAZAP2 (ENSNLEG00000031850) #25	SMAGP (ENSNLEG00000017775) #24	POU6F1 (ENSNLEG00000017777) #26	TFCP2 (ENSNLEG00000017779) #27	CSRNP2 (ENSNLEG00000029302) #28	LETMD1 (ENSNLEG00000035257) #29	SLC11A2 (ENSNLEG00000017784) #30	ENSNLEG00000034534	HIGD1C (ENSNLEG00000017789) #31	METTL7A (ENSNLEG00000017790) #32	TMPRSS12 (ENSNLEG00000017792) #33	ATF1 (ENSNLEG00000017793) #34	DIP2B (ENSNLEG00000017794) #35	LARP4 (ENSNLEG00000017798) #36
Cercopithecidae	ANCESTRAL SPECIES	3	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000153147.m.a.b.i.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01080000258859	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Cercopithecinae	ANCESTRAL SPECIES	7	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000153147.m.a.b.i.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01080000258859	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Vervet Monkey	MODERN SPECIES	2	KRT81 (ENSCSAG00000005782)	ENSCSAG00000005795	KRT7 (ENSCSAG00000005799)	ENSCSAG00000005803 #32	KRT80 (ENSCSAG00000005813)	ATG101 (ENSCSAG00000005819) #12	NR4A1 (ENSCSAG00000005822) #13	TAMALIN (ENSCSAG00000005826) #14	ACVR1B (ENSCSAG00000005829) #15	ACVRL1 (ENSCSAG00000005832) #16	ANKRD33 (ENSCSAG00000005834) #17	SCN8A (ENSCSAG00000005859) #19	SLC4A8 (ENSCSAG00000005876) #20	ENSCSAG00000019255	GALNT6 (ENSCSAG00000005887) #21	CELA1 (ENSCSAG00000005892) #22	ENSCSAG00000005895	SMAGP (ENSCSAG00000005898) #24	DAZAP2 (ENSCSAG00000005901) #25	ENSCSAG00000005904 #26	TFCP2 (ENSCSAG00000005909) #27	CSRNP2 (ENSCSAG00000005912) #28	LETMD1 (ENSCSAG00000005918) #29	SLC11A2 (ENSCSAG00000005939) #30	HIGD1C (ENSCSAG00000005946) #31	METTL7A (ENSCSAG00000005949) #32	ATF1 (ENSCSAG00000005951) #34	DIP2B (ENSCSAG00000005956) #35	LARP4 (ENSCSAG00000005967) #36	ENSCSAG00000005971	LIMA1 (ENSCSAG00000005975)
Cercopithecinae_a	ANCESTRAL SPECIES	7	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000153147.m.a.b.i.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01080000258859	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Macaca	ANCESTRAL SPECIES	6	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00990000203730
Pig-tailed macaque	MODERN SPECIES	526	KRT7 (ENSMNEG00000034954)	KRT80 (ENSMNEG00000032449)	ATG101 (ENSMNEG00000038302) #12	NR4A1 (ENSMNEG00000030022) #13	TAMALIN (ENSMNEG00000032518) #14	ACVR1B (ENSMNEG00000041904) #15	ACVRL1 (ENSMNEG00000038433) #16	ANKRD33 (ENSMNEG00000038182) #17	FIGNL2 (ENSMNEG00000010990) #18	TMDD1 (ENSMNEG00000041611)	SCN8A (ENSMNEG00000022599) #19	ENSMNEG00000039618	ENSMNEG00000024790	SLC4A8 (ENSMNEG00000029087) #20	GALNT6 (ENSMNEG00000036728) #21	CELA1 (ENSMNEG00000043609) #22	BIN2 (ENSMNEG00000038041) #23	DAZAP2 (ENSMNEG00000034058) #25	SMAGP (ENSMNEG00000028629) #24	POU6F1 (ENSMNEG00000029805) #26	TFCP2 (ENSMNEG00000011740) #27	CSRNP2 (ENSMNEG00000028791) #28	LETMD1 (ENSMNEG00000030951) #29	SLC11A2 (ENSMNEG00000037707) #30	HIGD1C (ENSMNEG00000013167) #31	METTL7A (ENSMNEG00000005792) #32	TMPRSS12 (ENSMNEG00000031814) #33	ATF1 (ENSMNEG00000043185) #34	DIP2B (ENSMNEG00000044361) #35	LARP4 (ENSMNEG00000034602) #36
Macaca_a	ANCESTRAL SPECIES	6	ENSGT00940000161838.j.a.a	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00390000003023	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT01100000263493.a.a.a.b.a.a.a.a.a.a.a.b.b.a.a	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36	ENSGT00990000203730
Rhesus	MODERN SPECIES	2	KRT86 (ENSMMUG00000057841)	KRT81 (ENSMMUG00000064514)	KRT7 (ENSMMUG00000010000)	KRT80 (ENSMMUG00000010002)	ATG101 (ENSMMUG00000015392) #12	NR4A1 (ENSMMUG00000022922) #13	TAMALIN (ENSMMUG00000006199) #14	ACVR1B (ENSMMUG00000046877) #15	ACVRL1 (ENSMMUG00000004982) #16	ANKRD33 (ENSMMUG00000004978) #17	TMDD1 (ENSMMUG00000060905)	SCN8A (ENSMMUG00000000415) #19	SLC4A8 (ENSMMUG00000006607) #20	ENSMMUG00000060239	GALNT6 (ENSMMUG00000023165) #21	CELA1 (ENSMMUG00000023164) #22	BIN2 (ENSMMUG00000023163) #23	SMAGP (ENSMMUG00000064406) #24	DAZAP2 (ENSMMUG00000001884) #25	POU6F1 (ENSMMUG00000044229) #26	TFCP2 (ENSMMUG00000000152) #27	CSRNP2 (ENSMMUG00000012457) #28	LETMD1 (ENSMMUG00000012453) #29	SLC11A2 (ENSMMUG00000022961) #30	HIGD1C (ENSMMUG00000037566) #31	METTL7A (ENSMMUG00000018485) #32	TMPRSS12 (ENSMMUG00000018484) #33	ATF1 (ENSMMUG00000054294) #34	DIP2B (ENSMMUG00000010565) #35	LARP4 (ENSMMUG00000008172) #36	ENSMMUG00000051371
Crab-eating macaque	MODERN SPECIES	2	ENSMFAG00000041485	KRT7 (ENSMFAG00000032813)	KRT80 (ENSMFAG00000001336)	ATG101 (ENSMFAG00000032136) #12	NR4A1 (ENSMFAG00000045297) #13	ENSMFAG00000026088	TAMALIN (ENSMFAG00000041403) #14	ENSMFAG00000062370	ACVR1B (ENSMFAG00000031949) #15	ACVRL1 (ENSMFAG00000039766) #16	ANKRD33 (ENSMFAG00000043847) #17	SCN8A (ENSMFAG00000005480) #19	SLC4A8 (ENSMFAG00000043127) #20	ENSMFAG00000050328	GALNT6 (ENSMFAG00000031673) #21	CELA1 (ENSMFAG00000044458) #22	BIN2 (ENSMFAG00000046291) #23	SMAGP (ENSMFAG00000053555) #24	DAZAP2 (ENSMFAG00000001009) #25	POU6F1 (ENSMFAG00000044336) #26	TFCP2 (ENSMFAG00000002003) #27	CSRNP2 (ENSMFAG00000061964) #28	ENSMFAG00000059803	LETMD1 (ENSMFAG00000035824) #29	SLC11A2 (ENSMFAG00000003818) #30	HIGD1C (ENSMFAG00000004051) #31	METTL7A (ENSMFAG00000031547) #32	TMPRSS12 (ENSMFAG00000015375) #33	ATF1 (ENSMFAG00000000109) #34	DIP2B (ENSMFAG00000031797) #35	ENSMFAG00000064106
Cercopithecinae_b	ANCESTRAL SPECIES	2	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000153147.m.a.b.i.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01080000258859	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Cercopithecinae_d	ANCESTRAL SPECIES	3	ENSGT00940000161838.j.a.a	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000153147.m.a.b.i.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01080000258859	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c #36
Drill	MODERN SPECIES	235	KRT86 (ENSMLEG00000035496)	KRT81 (ENSMLEG00000041310)	ENSMLEG00000031733	KRT7 (ENSMLEG00000043643)	KRT80 (ENSMLEG00000016736)	ATG101 (ENSMLEG00000043568) #12	NR4A1 (ENSMLEG00000030807) #13	TAMALIN (ENSMLEG00000029039) #14	ACVR1B (ENSMLEG00000024751) #15	ACVRL1 (ENSMLEG00000040795) #16	ANKRD33 (ENSMLEG00000039706) #17	SCN8A (ENSMLEG00000032224) #19	ENSMLEG00000042069	SLC4A8 (ENSMLEG00000033662) #20	GALNT6 (ENSMLEG00000044017) #21	CELA1 (ENSMLEG00000042617) #22	BIN2 (ENSMLEG00000030711) #23	DAZAP2 (ENSMLEG00000038258) #25	SMAGP (ENSMLEG00000031395) #24	POU6F1 (ENSMLEG00000043184) #26	TFCP2 (ENSMLEG00000030638) #27	CSRNP2 (ENSMLEG00000041452) #28	LETMD1 (ENSMLEG00000039305) #29	SLC11A2 (ENSMLEG00000008420) #30	ENSMLEG00000043041	HIGD1C (ENSMLEG00000028703) #31	METTL7A (ENSMLEG00000032507) #32	TMPRSS12 (ENSMLEG00000038354) #33	ATF1 (ENSMLEG00000029861) #34	DIP2B (ENSMLEG00000032298) #35	LARP4 (ENSMLEG00000039661) #36
Sooty mangabey	MODERN SPECIES	571	KRT81 (ENSCATG00000039113)	ENSCATG00000037407	KRT7 (ENSCATG00000044504)	KRT80 (ENSCATG00000033848)	ATG101 (ENSCATG00000040186) #12	NR4A1 (ENSCATG00000041094) #13	TAMALIN (ENSCATG00000031495) #14	ACVR1B (ENSCATG00000038508) #15	ACVRL1 (ENSCATG00000039505) #16	ANKRD33 (ENSCATG00000039422) #17	FIGNL2 (ENSCATG00000016456) #18	SCN8A (ENSCATG00000032443) #19	ENSCATG00000041727	SLC4A8 (ENSCATG00000034014) #20	GALNT6 (ENSCATG00000017599) #21	CELA1 (ENSCATG00000033779) #22	BIN2 (ENSCATG00000037877) #23	DAZAP2 (ENSCATG00000013180) #25	SMAGP (ENSCATG00000038432) #24	POU6F1 (ENSCATG00000036476) #26	TFCP2 (ENSCATG00000035625) #27	CSRNP2 (ENSCATG00000041885) #28	LETMD1 (ENSCATG00000029210) #29	SLC11A2 (ENSCATG00000031317) #30	HIGD1C (ENSCATG00000036630) #31	METTL7A (ENSCATG00000038652) #32	TMPRSS12 (ENSCATG00000008857) #33	ATF1 (ENSCATG00000034998) #34	DIP2B (ENSCATG00000031892) #35	LARP4 (ENSCATG00000044528) #36	FAM186A (ENSCATG00000015807)
Olive baboon	MODERN SPECIES	19	KRT81 (ENSPANG00000045944)	ENSPANG00000021076	ENSPANG00000014117	KRT80 (ENSPANG00000022412)	SMIM41 (ENSPANG00000039985)	ATG101 (ENSPANG00000012629) #12	NR4A1 (ENSPANG00000005853) #13	TAMALIN (ENSPANG00000012541) #14	ACVR1B (ENSPANG00000013988) #15	ACVRL1 (ENSPANG00000019742) #16	ANKRD33 (ENSPANG00000015565) #17	FIGNL2 (ENSPANG00000034570) #18	SCN8A (ENSPANG00000024943) #19	SLC4A8 (ENSPANG00000003391) #20	GALNT6 (ENSPANG00000022413) #21	CELA1 (ENSPANG00000019743) #22	BIN2 (ENSPANG00000010380) #23	SMAGP (ENSPANG00000046055) #24	DAZAP2 (ENSPANG00000017307) #25	POU6F1 (ENSPANG00000023758) #26	TFCP2 (ENSPANG00000019744) #27	CSRNP2 (ENSPANG00000026023) #28	LETMD1 (ENSPANG00000015332) #29	SLC11A2 (ENSPANG00000010381) #30	HIGD1C (ENSPANG00000019745) #31	METTL7A (ENSPANG00000012631) #32	TMPRSS12 (ENSPANG00000015830) #33	ATF1 (ENSPANG00000033486) #34	DIP2B (ENSPANG00000025343) #35	LARP4 (ENSPANG00000022964) #36	ENSPANG00000045646
Rhinopithecus	ANCESTRAL SPECIES	4	ENSGT00940000161838.j.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00910000147057	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000153147.m.a.b.i.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a.e.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.o.b #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409.c.b #36	ENSGT00940000163376
Black snub-nosed monkey	MODERN SPECIES	2207	KRT81 (ENSRBIG00000029205)	ENSRBIG00000025431	KRT7 (ENSRBIG00000043757)	KRT80 (ENSRBIG00000030932)	ATG101 (ENSRBIG00000028557) #12	NR4A1 (ENSRBIG00000036422) #13	TAMALIN (ENSRBIG00000010764) #14	ACVR1B (ENSRBIG00000037087) #15	ENSRBIG00000036170	ACVRL1 (ENSRBIG00000028774) #16	ANKRD33 (ENSRBIG00000030526) #17	FIGNL2 (ENSRBIG00000006929) #18	SCN8A (ENSRBIG00000039953) #19	SLC4A8 (ENSRBIG00000006317) #20	GALNT6 (ENSRBIG00000041590) #21	CELA1 (ENSRBIG00000003848) #22	BIN2 (ENSRBIG00000035511) #23	DAZAP2 (ENSRBIG00000044166) #25	SMAGP (ENSRBIG00000029217) #24	POU6F1 (ENSRBIG00000017513) #26	TFCP2 (ENSRBIG00000043884) #27	CSRNP2 (ENSRBIG00000044429) #28	LETMD1 (ENSRBIG00000034947) #29	SLC11A2 (ENSRBIG00000037590) #30	HIGD1C (ENSRBIG00000043800) #31
Golden snub-nosed monkey	MODERN SPECIES	1766	ENSRROG00000031600	KRT7 (ENSRROG00000040456)	KRT80 (ENSRROG00000041866)	ATG101 (ENSRROG00000033976) #12	NR4A1 (ENSRROG00000028655) #13	TAMALIN (ENSRROG00000029895) #14	ACVR1B (ENSRROG00000033929) #15	ENSRROG00000035344	ACVRL1 (ENSRROG00000032701) #16	ANKRD33 (ENSRROG00000004325) #17	FIGNL2 (ENSRROG00000014535) #18	SCN8A (ENSRROG00000037059) #19	ENSRROG00000041363	SLC4A8 (ENSRROG00000043426) #20	GALNT6 (ENSRROG00000023112) #21	CELA1 (ENSRROG00000030882) #22
Laurasiatheria	ANCESTRAL SPECIES	6	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Laurasiatheria_a	ANCESTRAL SPECIES	6	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Artiodactyla	ANCESTRAL SPECIES	6	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Suina	ANCESTRAL SPECIES	21	ENSGT00940000154026.b.b.g.a	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Chacoan peccary	MODERN SPECIES	899	ENSCWAG00000012816	KRT7 (ENSCWAG00000013217)	KRT80 (ENSCWAG00000013337)	SMIM41 (ENSCWAG00000013517)	ATG101 (ENSCWAG00000013534) #12	NR4A1 (ENSCWAG00000013578) #13	TAMALIN (ENSCWAG00000013643) #14	ACVR1B (ENSCWAG00000013769) #15	ACVRL1 (ENSCWAG00000011652) #16	ENSCWAG00000011812 #17	FIGNL2 (ENSCWAG00000011866) #18	SCN8A (ENSCWAG00000012012) #19	ENSCWAG00000014190	SLC4A8 (ENSCWAG00000014248) #20	GALNT6 (ENSCWAG00000014709) #21	CELA1 (ENSCWAG00000014792) #22	BIN2 (ENSCWAG00000014884) #23	DAZAP2 (ENSCWAG00000015123) #25	SMAGP (ENSCWAG00000015312) #24	POU6F1 (ENSCWAG00000015369) #26	TFCP2 (ENSCWAG00000015429) #27	CSRNP2 (ENSCWAG00000015547) #28	LETMD1 (ENSCWAG00000015606) #29	SLC11A2 (ENSCWAG00000015833) #30	HIGD1C (ENSCWAG00000016169) #31	METTL7A (ENSCWAG00000016196) #32	TMPRSS12 (ENSCWAG00000016224) #33	ATF1 (ENSCWAG00000016274) #34	DIP2B (ENSCWAG00000016327) #35	LARP4 (ENSCWAG00000016605) #36	ENSCWAG00000016983
Pig	MODERN SPECIES	73															GALNT6 (ENSSSCG00000026890) #21	CELA1 (ENSSSCG00000047232) #22	BIN2 (ENSSSCG00000000223) #23	SMAGP (ENSSSCG00000061033) #24	DAZAP2 (ENSSSCG00000022674) #25	POU6F1 (ENSSSCG00000000220) #26	TFCP2 (ENSSSCG00000031206) #27	ENSSSCG00000053591	CSRNP2 (ENSSSCG00000037029) #28	LETMD1 (ENSSSCG00000032096) #29	SLC11A2 (ENSSSCG00000034039) #30	HIGD1C (ENSSSCG00000035326) #31	ENSSSCG00000035675 #32
Artiodactyla_a	ANCESTRAL SPECIES	5	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Camelidae	ANCESTRAL SPECIES	27	ENSGT00940000154026.b.b.h	ENSGT00940000154026.b.b.g.b	ENSGT00940000154026.b.b.g.a	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Arabian camel	MODERN SPECIES	3	ENSCDRG00005009759	ENSCDRG00005010520	ENSCDRG00005010953	ENSCDRG00005011631	KRT80 (ENSCDRG00005011742)	SMIM41 (ENSCDRG00005011830)	ATG101 (ENSCDRG00005011850) #12	NR4A1 (ENSCDRG00005011894) #13	TAMALIN (ENSCDRG00005012003) #14	ACVR1B (ENSCDRG00005012094) #15	ACVRL1 (ENSCDRG00005012249) #16	ENSCDRG00005012574 #17	SCN8A (ENSCDRG00005012815) #19	SLC4A8 (ENSCDRG00005012997) #20	GALNT6 (ENSCDRG00005013339) #21	CELA1 (ENSCDRG00005013411) #22	BIN2 (ENSCDRG00005013528) #23	SMAGP (ENSCDRG00005013680) #24	DAZAP2 (ENSCDRG00005013743) #25	POU6F1 (ENSCDRG00005014094) #26	TFCP2 (ENSCDRG00005003336) #27	CSRNP2 (ENSCDRG00005003407) #28	LETMD1 (ENSCDRG00005003475) #29	SLC11A2 (ENSCDRG00005003638) #30	HIGD1C (ENSCDRG00005003927) #31	METTL7A (ENSCDRG00005003947) #32	TMPRSS12 (ENSCDRG00005003974) #33	ATF1 (ENSCDRG00005004036) #34	DIP2B (ENSCDRG00005004098) #35	LARP4 (ENSCDRG00005004368) #36	ENSCDRG00005004665
Alpaca	MODERN SPECIES	3551														SLC4A8 (ENSVPAG00000008139) #20	ENSVPAG00000008134 #21	CELA1 (ENSVPAG00000008131) #22	ENSVPAG00000008125 #23
Artiodactyla_b	ANCESTRAL SPECIES	5	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00910000148932	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Cetacea	ANCESTRAL SPECIES	8	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00950000183120.e.b.a.a.b.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Odontoceti	ANCESTRAL SPECIES	7	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00950000183120.e.b.a.a.b.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Odontoceti_a	ANCESTRAL SPECIES	6	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00950000183120.e.b.a.a.b.a	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Odontoceti_b	ANCESTRAL SPECIES	7	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00950000183120.e.b.a.a.b.a	ENSGT00940000157422 #20	ENSGT00390000002873.y	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Monodontidae	ANCESTRAL SPECIES	6	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00950000183120.e.b.a.a.b.a	ENSGT00940000157422 #20	ENSGT00390000002873.y	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Narwhal	MODERN SPECIES	313	KRT7 (ENSMMNG00015015097)	KRT80 (ENSMMNG00015015046)	SMIM41 (ENSMMNG00015015020)	ATG101 (ENSMMNG00015015010) #12	NR4A1 (ENSMMNG00015014994) #13	TAMALIN (ENSMMNG00015014976) #14	ACVR1B (ENSMMNG00015014919) #15	ACVRL1 (ENSMMNG00015014871) #16	ENSMMNG00015014857 #17	FIGNL2 (ENSMMNG00015014853) #18	ENSMMNG00015014837	SCN8A (ENSMMNG00015014815) #19	ENSMMNG00015014784	SLC4A8 (ENSMMNG00015014763) #20	GALNT6 (ENSMMNG00015014722) #21	CELA1 (ENSMMNG00015014698) #22	BIN2 (ENSMMNG00015014676) #23	SMAGP (ENSMMNG00015014658) #24	DAZAP2 (ENSMMNG00015014628) #25	POU6F1 (ENSMMNG00015014586) #26	TFCP2 (ENSMMNG00015014558) #27	CSRNP2 (ENSMMNG00015014531) #28	LETMD1 (ENSMMNG00015014491) #29	SLC11A2 (ENSMMNG00015014416) #30	HIGD1C (ENSMMNG00015014381) #31	METTL7A (ENSMMNG00015014365) #32	TMPRSS12 (ENSMMNG00015014350) #33	ATF1 (ENSMMNG00015014323) #34	DIP2B (ENSMMNG00015014299) #35	LARP4 (ENSMMNG00015014255) #36	ENSMMNG00015014228
Beluga whale	MODERN SPECIES	39	KRT80 (ENSDLEG00000004443)	SMIM41 (ENSDLEG00000004454)	ATG101 (ENSDLEG00000004460) #12	NR4A1 (ENSDLEG00000004465) #13	TAMALIN (ENSDLEG00000004472) #14	ACVR1B (ENSDLEG00000004475) #15	ACVRL1 (ENSDLEG00000004485) #16	ANKRD33 (ENSDLEG00000004494) #17	FIGNL2 (ENSDLEG00000004500) #18	ENSDLEG00000004505 #19	ENSDLEG00000004643 #19	ENSDLEG00000005349	SLC4A8 (ENSDLEG00000005481) #20	ENSDLEG00000006652	GALNT6 (ENSDLEG00000006655) #21	CELA1 (ENSDLEG00000006691) #22	BIN2 (ENSDLEG00000006701) #23	SMAGP (ENSDLEG00000006720) #24	DAZAP2 (ENSDLEG00000006724) #25	POU6F1 (ENSDLEG00000006732) #26	ENSDLEG00000006802 #27	ENSDLEG00000006804 #27	CSRNP2 (ENSDLEG00000006811) #28	LETMD1 (ENSDLEG00000006817) #29	SLC11A2 (ENSDLEG00000006858) #30	HIGD1C (ENSDLEG00000006958) #31	METTL7A (ENSDLEG00000006970) #32	TMPRSS12 (ENSDLEG00000006974) #33	ATF1 (ENSDLEG00000006983) #34	DIP2B (ENSDLEG00000007315) #35	LARP4 (ENSDLEG00000015261) #36
Vaquita	MODERN SPECIES	1	ENSPSNG00000006990 #32	KRT80 (ENSPSNG00000007067)	SMIM41 (ENSPSNG00000007128)	ATG101 (ENSPSNG00000007147) #12	NR4A1 (ENSPSNG00000007182) #13	TAMALIN (ENSPSNG00000007239) #14	ACVR1B (ENSPSNG00000007308) #15	ACVRL1 (ENSPSNG00000007378) #16	ENSPSNG00000007471 #17	FIGNL2 (ENSPSNG00000007504) #18	SCN8A (ENSPSNG00000007590) #19	ENSPSNG00000007667	SLC4A8 (ENSPSNG00000007704) #20	ENSPSNG00000008012	GALNT6 (ENSPSNG00000008038) #21	CELA1 (ENSPSNG00000008108) #22	BIN2 (ENSPSNG00000008169) #23	DAZAP2 (ENSPSNG00000008293) #25	SMAGP (ENSPSNG00000008431) #24	POU6F1 (ENSPSNG00000008493) #26	TFCP2 (ENSPSNG00000008560) #27	CSRNP2 (ENSPSNG00000008630) #28	LETMD1 (ENSPSNG00000008679) #29	SLC11A2 (ENSPSNG00000008801) #30	HIGD1C (ENSPSNG00000008962) #31	ENSPSNG00000008989 #32	TMPRSS12 (ENSPSNG00000009020) #33	ATF1 (ENSPSNG00000009073) #34	DIP2B (ENSPSNG00000009123) #35	LARP4 (ENSPSNG00000009414) #36	LIMA1 (ENSPSNG00000009785)
Dolphin	MODERN SPECIES	3411												FIGNL2 (ENSTTRG00000013856) #18	SCN8A (ENSTTRG00000013854) #19	SLC4A8 (ENSTTRG00000013852) #20	GALNT6 (ENSTTRG00000013851) #21	CELA1 (ENSTTRG00000013850) #22	BIN2 (ENSTTRG00000013848) #23	SMAGP (ENSTTRG00000013846) #24	DAZAP2 (ENSTTRG00000013844) #25	POU6F1 (ENSTTRG00000013841) #26	TFCP2 (ENSTTRG00000013836) #27	CSRNP2 (ENSTTRG00000013833) #28	LETMD1 (ENSTTRG00000013826) #29	SLC11A2 (ENSTTRG00000013819) #30
Sperm whale	MODERN SPECIES	17	ENSPCTG00005014784	KRT7 (ENSPCTG00005014882)	ENSPCTG00005014932 #32	KRT80 (ENSPCTG00005014979)	ENSPCTG00005015056 #15	ACVRL1 (ENSPCTG00005015194) #16	ANKRD33 (ENSPCTG00005015412) #17	FIGNL2 (ENSPCTG00005015483) #18	SCN8A (ENSPCTG00005015636) #19	ENSPCTG00005017186	ENSPCTG00005017203	SLC4A8 (ENSPCTG00005017223) #20	ENSPCTG00005017334	ENSPCTG00005017355	GALNT6 (ENSPCTG00005017417) #21	CELA1 (ENSPCTG00005017477) #22	BIN2 (ENSPCTG00005017577) #23	SMAGP (ENSPCTG00005017693) #24	TFCP2 (ENSPCTG00005017758) #27	CSRNP2 (ENSPCTG00005017851) #28	LETMD1 (ENSPCTG00005017894) #29	SLC11A2 (ENSPCTG00005018048) #30	HIGD1C (ENSPCTG00005018312) #31	ENSPCTG00005006742 #32	TMPRSS12 (ENSPCTG00005006754) #33	ENSPCTG00005006806 #34	DIP2B (ENSPCTG00005006865) #35	LARP4 (ENSPCTG00005007174) #36	ENSPCTG00005007353	LIMA1 (ENSPCTG00005007407)	BCDIN3D (ENSPCTG00005007543)
Blue whale	MODERN SPECIES	1	ENSBMSG00010006885 #32	KRT80 (ENSBMSG00010006816)	SMIM41 (ENSBMSG00010006799)	ATG101 (ENSBMSG00010006786) #12	NR4A1 (ENSBMSG00010006768) #13	TAMALIN (ENSBMSG00010006733) #14	ACVR1B (ENSBMSG00010006682) #15	ACVRL1 (ENSBMSG00010006622) #16	ENSBMSG00010006604 #17	FIGNL2 (ENSBMSG00010006593) #18	ENSBMSG00010006571	SCN8A (ENSBMSG00010006195) #19	ENSBMSG00010006099	SLC4A8 (ENSBMSG00010006054) #20	GALNT6 (ENSBMSG00010020104) #21	CELA1 (ENSBMSG00010020080) #22	ENSBMSG00010020051 #23	SMAGP (ENSBMSG00010020028) #24	ENSBMSG00010019971 #25	POU6F1 (ENSBMSG00010019939) #26	TFCP2 (ENSBMSG00010019886) #27	LETMD1 (ENSBMSG00010019748) #29	SLC11A2 (ENSBMSG00010019594) #30	HIGD1C (ENSBMSG00010019525) #31	ENSBMSG00010019512	ENSBMSG00010019492 #32	TMPRSS12 (ENSBMSG00010019470) #33	ATF1 (ENSBMSG00010019447) #34	DIP2B (ENSBMSG00010019377) #35	LARP4 (ENSBMSG00010019257) #36	ENSBMSG00010019191
Pecora	ANCESTRAL SPECIES	3	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00960000186993	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l #30	ENSGT00940000154786.f.a.b #32	ENSGT00940000155330.m.b #30	ENSGT00940000154786.f.a.a #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33
Percora_a	ANCESTRAL SPECIES	3	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00960000186993	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l #30	ENSGT00940000154786.f.a.b #32	ENSGT00940000155330.m.b #30	ENSGT00940000154786.f.a.a #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33
Bovidae	ANCESTRAL SPECIES	3	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00960000186993	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l #30	ENSGT00940000154786.f.a.b #32	ENSGT00940000155330.m.b #30	ENSGT00940000154786.f.a.a #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33
Caprinae	ANCESTRAL SPECIES		ENSGT00940000154026.b.b.g.a.f	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00960000186993	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l #30	ENSGT00940000155330.m.b #30	ENSGT00940000154786.f.a.a #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34
Goat	MODERN SPECIES	24	ENSCHIG00000023520	ENSCHIG00000023937	ENSCHIG00000021968	KRT7 (ENSCHIG00000020612)	KRT80 (ENSCHIG00000015503)	ATG101 (ENSCHIG00000017209) #12	NR4A1 (ENSCHIG00000009664) #13	TAMALIN (ENSCHIG00000025555) #14	ACVR1B (ENSCHIG00000018417) #15	ACVRL1 (ENSCHIG00000027035) #16	ENSCHIG00000016439 #17	SCN8A (ENSCHIG00000009567) #19	ENSCHIG00000017126	SLC4A8 (ENSCHIG00000013042) #20	GALNT6 (ENSCHIG00000017266) #21	CELA1 (ENSCHIG00000011067) #22	ENSCHIG00000002918 #23	SMAGP (ENSCHIG00000025991) #24	DAZAP2 (ENSCHIG00000025258) #25	ENSCHIG00000008588 #26	ENSCHIG00000026367 #26	TFCP2 (ENSCHIG00000022175) #27	CSRNP2 (ENSCHIG00000017177) #28	LETMD1 (ENSCHIG00000008272) #29	ENSCHIG00000026028 #30	ENSCHIG00000023871 #30	ENSCHIG00000018958 #32	ENSCHIG00000012991 #30	HIGD1C (ENSCHIG00000026601) #31	ENSCHIG00000021113 #32	TMPRSS12 (ENSCHIG00000023016) #33
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020014353	KRT7 (ENSOARG00020014582)	KRT80 (ENSOARG00020014652)	SMIM41 (ENSOARG00020014750)	ATG101 (ENSOARG00020014768) #12	NR4A1 (ENSOARG00020014807) #13	TAMALIN (ENSOARG00020014917) #14	ACVR1B (ENSOARG00020015084) #15	ACVRL1 (ENSOARG00020015554) #16	ENSOARG00020015723 #17	FIGNL2 (ENSOARG00020015786) #18	SCN8A (ENSOARG00020015921) #19	ENSOARG00020018366	SLC4A8 (ENSOARG00020018389) #20	GALNT6 (ENSOARG00020018817) #21	CELA1 (ENSOARG00020018910) #22	BIN2 (ENSOARG00020019023) #23	DAZAP2 (ENSOARG00020019274) #25	SMAGP (ENSOARG00020019563) #24	POU6F1 (ENSOARG00020019639) #26	TFCP2 (ENSOARG00020019795) #27	CSRNP2 (ENSOARG00020020021) #28	LETMD1 (ENSOARG00020020065) #29	ENSOARG00020020191 #30	ENSOARG00020020745 #32	ENSOARG00020020771 #30	HIGD1C (ENSOARG00020020906) #31	ENSOARG00020020942 #32	TMPRSS12 (ENSOARG00020020971) #33	ATF1 (ENSOARG00020021026) #34	DIP2B (ENSOARG00020021074) #35
Bovinae	ANCESTRAL SPECIES	17	ENSGT00940000154026.b.b.g.a.f	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l.b.a #30	ENSGT00940000154786.f.a.b #32	ENSGT00940000155330.m.b #30	ENSGT00940000154786.f.a.a #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00390000017639.c
Bos	ANCESTRAL SPECIES	2	ENSGT00940000154026.b.b.g.a.f	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l.b.a #30	ENSGT00940000154786.f.a.b #32	ENSGT00940000155330.m.b #30	ENSGT00940000154786.f.a.a #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00390000017639.c
Bos_b	ANCESTRAL SPECIES	4	ENSGT00940000154026.b.b.h	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT01100000263481.n.a.b.a.a.a.b.b.a.b.a.b.b.b.b.a.a.a	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l.a #30	ENSGT00940000154786.f.a.b #32	ENSGT00940000155330.m.b #30	ENSGT00940000154786.f.a.a #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00390000017639.c
Hybrid Bos Indicus	MODERN SPECIES	24	ENSBIXG00005002617	KRT7 (ENSBIXG00005002618)	KRT80 (ENSBIXG00005002624)	ATG101 (ENSBIXG00005016484) #12	NR4A1 (ENSBIXG00005016594) #13	TAMALIN (ENSBIXG00005002680) #14	ACVR1B (ENSBIXG00005016691) #15	ACVRL1 (ENSBIXG00005016803) #16	ENSBIXG00005016822 #17	FIGNL2 (ENSBIXG00005005509) #18	SCN8A (ENSBIXG00005016926) #19	ENSBIXG00005016951	SLC4A8 (ENSBIXG00005017014) #20	ENSBIXG00005017023	GALNT6 (ENSBIXG00005017048) #21	CELA1 (ENSBIXG00005002777) #22	BIN2 (ENSBIXG00005017157) #23	SMAGP (ENSBIXG00005002797) #24	DAZAP2 (ENSBIXG00005017295) #25	POU6F1 (ENSBIXG00005017332) #26	ENSBIXG00005017339	TFCP2 (ENSBIXG00005017401) #27	CSRNP2 (ENSBIXG00005002832) #28	LETMD1 (ENSBIXG00005002848) #29	ENSBIXG00005005653 #32	ENSBIXG00005017599 #32	ENSBIXG00005002878 #30	ENSBIXG00005017973 #30	ENSBIXG00005018023	ENSBIXG00005018045 #32	ENSBIXG00005018062
Cow	MODERN SPECIES	24	ENSBTAG00000016166	KRT7 (ENSBTAG00000016165)	KRT80 (ENSBTAG00000007204)	SMIM41 (ENSBTAG00000048888)	ATG101 (ENSBTAG00000000510) #12	NR4A1 (ENSBTAG00000000507) #13	TAMALIN (ENSBTAG00000021658) #14	ACVR1B (ENSBTAG00000013555) #15	ACVRL1 (ENSBTAG00000013843) #16	ANKRD33 (ENSBTAG00000017113) #17	FIGNL2 (ENSBTAG00000002673) #18	SCN8A (ENSBTAG00000021339) #19	SLC4A8 (ENSBTAG00000017950) #20	ENSBTAG00000049207	GALNT6 (ENSBTAG00000017943) #21	CELA1 (ENSBTAG00000008900) #22	BIN2 (ENSBTAG00000008897) #23	SMAGP (ENSBTAG00000001983) #24	DAZAP2 (ENSBTAG00000004349) #25	POU6F1 (ENSBTAG00000016362) #26	ENSBTAG00000051039 #26	TFCP2 (ENSBTAG00000019312) #27	CSRNP2 (ENSBTAG00000010928) #28	LETMD1 (ENSBTAG00000010924) #29	SLC11A2 (ENSBTAG00000032914) #30	ENSBTAG00000049198 #32	ENSBTAG00000032902 #30	ENSBTAG00000032899 #32	ENSBTAG00000002355 #30	HIGD1C (ENSBTAG00000047358) #31	METTL7A (ENSBTAG00000025005) #32
Bos_a	ANCESTRAL SPECIES	3	ENSGT00940000163840	ENSGT00940000154026.b.b.g.b	ENSGT00940000154026.b.b.g.a.f	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330.l.b.a #30	ENSGT00940000154786.f.a.b #32	ENSGT00940000155330.m.a #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00390000017639.c	ENSGT00940000161878 #33	ENSGT00940000158200 #34
Domestic yak	MODERN SPECIES	24	ENSBGRG00000000704	ENSBGRG00000000649	KRT7 (ENSBGRG00000000608)	KRT80 (ENSBGRG00000000574)	ATG101 (ENSBGRG00000000549) #12	NR4A1 (ENSBGRG00000000523) #13	TAMALIN (ENSBGRG00000000501) #14	ACVR1B (ENSBGRG00000000394) #15	ACVRL1 (ENSBGRG00000000336) #16	ENSBGRG00000000316 #17	FIGNL2 (ENSBGRG00000000309) #18	SCN8A (ENSBGRG00000005468) #19	SLC4A8 (ENSBGRG00000005222) #20	ENSBGRG00000005203	GALNT6 (ENSBGRG00000005186) #21	CELA1 (ENSBGRG00000005091) #22	BIN2 (ENSBGRG00000004814) #23	SMAGP (ENSBGRG00000004731) #24	DAZAP2 (ENSBGRG00000004487) #25	POU6F1 (ENSBGRG00000004365) #26	TFCP2 (ENSBGRG00000004241) #27	CSRNP2 (ENSBGRG00000004209) #28	LETMD1 (ENSBGRG00000004075) #29	SLC11A2 (ENSBGRG00000004038) #30	HIGD1C (ENSBGRG00000004019) #31	ENSBGRG00000004006 #32	ENSBGRG00000003989 #32	ENSBGRG00000003970	TMPRSS12 (ENSBGRG00000003922) #33	ATF1 (ENSBGRG00000003877) #34	ENSBGRG00000003849
Wild yak	MODERN SPECIES	2281												SCN8A (ENSBMUG00000026270) #19	ENSBMUG00000026257	SLC4A8 (ENSBMUG00000026256) #20	GALNT6 (ENSBMUG00000026245) #21	CELA1 (ENSBMUG00000026243) #22	BIN2 (ENSBMUG00000026239) #23	SMAGP (ENSBMUG00000026235) #24	DAZAP2 (ENSBMUG00000026230) #25	POU6F1 (ENSBMUG00000026224) #26	TFCP2 (ENSBMUG00000026223) #27	CSRNP2 (ENSBMUG00000026218) #28	LETMD1 (ENSBMUG00000026215) #29	ENSBMUG00000026209 #30	ENSBMUG00000026207 #32
American bison	MODERN SPECIES	3297	ENSBBBG00000020608	ENSBBBG00000020626	ENSBBBG00000020640	ENSBBBG00000020693	ENSBBBG00000020704	KRT80 (ENSBBBG00000020761)	SMIM41 (ENSBBBG00000020772)	ATG101 (ENSBBBG00000020777) #12	NR4A1 (ENSBBBG00000020827) #13	TAMALIN (ENSBBBG00000020840) #14	ACVR1B (ENSBBBG00000008398) #15	ACVRL1 (ENSBBBG00000020929) #16	SCN8A (ENSBBBG00000021249) #19	SLC4A8 (ENSBBBG00000021328) #20	GALNT6 (ENSBBBG00000021353) #21	CELA1 (ENSBBBG00000005704) #22	BIN2 (ENSBBBG00000021393) #23	SMAGP (ENSBBBG00000007058) #24	DAZAP2 (ENSBBBG00000021506) #25	POU6F1 (ENSBBBG00000005734) #26	TFCP2 (ENSBBBG00000005748) #27	CSRNP2 (ENSBBBG00000007331) #28	LETMD1 (ENSBBBG00000005771) #29	ENSBBBG00000021846 #30	ENSBBBG00000021855 #32	ENSBBBG00000005816 #30	ENSBBBG00000022123 #30	HIGD1C (ENSBBBG00000022141) #31	ENSBBBG00000022162	ENSBBBG00000005851	ENSBBBG00000022196 #32
Siberian musk deer	MODERN SPECIES	320	ENSMMSG00000020648	KRT7 (ENSMMSG00000020609)	KRT80 (ENSMMSG00000020578)	SMIM41 (ENSMMSG00000020552)	ATG101 (ENSMMSG00000020534) #12	NR4A1 (ENSMMSG00000020495) #13	TAMALIN (ENSMMSG00000020446) #14	ACVR1B (ENSMMSG00000020402) #15	ACVRL1 (ENSMMSG00000020345) #16	ENSMMSG00000020329 #17	FIGNL2 (ENSMMSG00000020309) #18	ENSMMSG00000020256	SCN8A (ENSMMSG00000019284) #19	SLC4A8 (ENSMMSG00000018913) #20	GALNT6 (ENSMMSG00000018859) #21	CELA1 (ENSMMSG00000018793) #22	BIN2 (ENSMMSG00000018618) #23	SMAGP (ENSMMSG00000018579) #24	ENSMMSG00000018499 #25	POU6F1 (ENSMMSG00000018438) #26	TFCP2 (ENSMMSG00000018349) #27	CSRNP2 (ENSMMSG00000018302) #28	LETMD1 (ENSMMSG00000018148) #29	ENSMMSG00000018041 #30	ENSMMSG00000017883 #30	METTL7A (ENSMMSG00000017841) #32	ENSMMSG00000017001 #30	HIGD1C (ENSMMSG00000016946) #31	ENSMMSG00000016928 #32	TMPRSS12 (ENSMMSG00000016871) #33	ENSMMSG00000016835 #34
Laurasiatheria_b	ANCESTRAL SPECIES	6	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Carnivora	ANCESTRAL SPECIES	3	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Felidae	ANCESTRAL SPECIES	2	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b.i #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Panthera	ANCESTRAL SPECIES		ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b.i #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Panthera_a	ANCESTRAL SPECIES	5	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b.i #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00950000183123.g.b.b	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
leopard	MODERN SPECIES	77	ENSPPRG00000010927	ENSPPRG00000011386	ENSPPRG00000012992 #32	KRT80 (ENSPPRG00000013355)	ATG101 (ENSPPRG00000013683) #12	NR4A1 (ENSPPRG00000019723) #13	TAMALIN (ENSPPRG00000023402) #14	ACVR1B (ENSPPRG00000000066) #15	ACVRL1 (ENSPPRG00000001630) #16	ENSPPRG00000001890 #17	ENSPPRG00000002339 #17	FIGNL2 (ENSPPRG00000017803) #18	SCN8A (ENSPPRG00000009861) #19	SLC4A8 (ENSPPRG00000014084) #20	GALNT6 (ENSPPRG00000016514) #21	CELA1 (ENSPPRG00000019440) #22	BIN2 (ENSPPRG00000023481) #23	SMAGP (ENSPPRG00000000085) #24	DAZAP2 (ENSPPRG00000001865) #25	POU6F1 (ENSPPRG00000003357) #26	TFCP2 (ENSPPRG00000005938) #27	CSRNP2 (ENSPPRG00000006285) #28	LETMD1 (ENSPPRG00000007835) #29	SLC11A2 (ENSPPRG00000012070) #30	HIGD1C (ENSPPRG00000012636) #31	ENSPPRG00000012824	ENSPPRG00000013022 #32	TMPRSS12 (ENSPPRG00000013377) #33	ATF1 (ENSPPRG00000014095) #34	ENSPPRG00000015331	DIP2B (ENSPPRG00000020933) #35
lion	MODERN SPECIES	7	KRT7 (ENSPLOG00000002383)	ENSPLOG00000002313 #32	KRT80 (ENSPLOG00000002260)	SMIM41 (ENSPLOG00000002225)	ATG101 (ENSPLOG00000002209) #12	NR4A1 (ENSPLOG00000002178) #13	TAMALIN (ENSPLOG00000002138) #14	ACVR1B (ENSPLOG00000002117) #15	ACVRL1 (ENSPLOG00000002066) #16	ENSPLOG00000002020 #17	FIGNL2 (ENSPLOG00000001999) #18	ENSPLOG00000001951	SCN8A (ENSPLOG00000001694) #19	SLC4A8 (ENSPLOG00000001444) #20	GALNT6 (ENSPLOG00000001400) #21	CELA1 (ENSPLOG00000001357) #22	BIN2 (ENSPLOG00000001283) #23	SMAGP (ENSPLOG00000001253) #24	DAZAP2 (ENSPLOG00000001193) #25	POU6F1 (ENSPLOG00000001146) #26	TFCP2 (ENSPLOG00000001041) #27	CSRNP2 (ENSPLOG00000000947) #28	LETMD1 (ENSPLOG00000000904) #29	SLC11A2 (ENSPLOG00000000737) #30	HIGD1C (ENSPLOG00000000654) #31	ENSPLOG00000000627	ENSPLOG00000000616 #32	TMPRSS12 (ENSPLOG00000000593) #33	ATF1 (ENSPLOG00000016034) #34	ENSPLOG00000016005	DIP2B (ENSPLOG00000015877) #35
Tiger	MODERN SPECIES	14	ENSPTIG00000009991	ENSPTIG00000008863	ENSPTIG00000007182	ENSPTIG00000006639	ENSPTIG00000004899	ENSPTIG00000004111	KRT80 (ENSPTIG00000002412)	ATG101 (ENSPTIG00000001725) #12	NR4A1 (ENSPTIG00000021890) #13	ACVR1B (ENSPTIG00000021760) #15	ACVRL1 (ENSPTIG00000021376) #16	ENSPTIG00000021274 #17	SCN8A (ENSPTIG00000012185) #19	SLC4A8 (ENSPTIG00000007417) #20	GALNT6 (ENSPTIG00000005754) #21	CELA1 (ENSPTIG00000002392) #22	BIN2 (ENSPTIG00000021505) #23	SMAGP (ENSPTIG00000020940) #24	DAZAP2 (ENSPTIG00000019325) #25	POU6F1 (ENSPTIG00000018169) #26	TFCP2 (ENSPTIG00000015396) #27	CSRNP2 (ENSPTIG00000015106) #28	LETMD1 (ENSPTIG00000013794) #29	SLC11A2 (ENSPTIG00000009112) #30	HIGD1C (ENSPTIG00000008216) #31	METTL7A (ENSPTIG00000007802) #32	TMPRSS12 (ENSPTIG00000007159) #33	ATF1 (ENSPTIG00000006770) #34	ENSPTIG00000004844	DIP2B (ENSPTIG00000021861) #35	LARP4 (ENSPTIG00000015617) #36
Cat	MODERN SPECIES	238	ENSFCAG00000023610	KRT7 (ENSFCAG00000000270)	KRT80 (ENSFCAG00000023572)	SMIM41 (ENSFCAG00000040537)	ATG101 (ENSFCAG00000029418) #12	NR4A1 (ENSFCAG00000000268) #13	TAMALIN (ENSFCAG00000000267) #14	ACVR1B (ENSFCAG00000026263) #15	ACVRL1 (ENSFCAG00000000265) #16	ANKRD33 (ENSFCAG00000000264) #17	FIGNL2 (ENSFCAG00000044265) #18	ENSFCAG00000033483	SCN8A (ENSFCAG00000004415) #19	SLC4A8 (ENSFCAG00000004414) #20	GALNT6 (ENSFCAG00000004412) #21	CELA1 (ENSFCAG00000004411) #22	BIN2 (ENSFCAG00000004410) #23	SMAGP (ENSFCAG00000016237) #24	DAZAP2 (ENSFCAG00000037900) #25	POU6F1 (ENSFCAG00000004408) #26	TFCP2 (ENSFCAG00000030292) #27	CSRNP2 (ENSFCAG00000004406) #28	LETMD1 (ENSFCAG00000007253) #29	SLC11A2 (ENSFCAG00000004405) #30	HIGD1C (ENSFCAG00000048526) #31	METTL7A (ENSFCAG00000013893) #32	TMPRSS12 (ENSFCAG00000018533) #33	ATF1 (ENSFCAG00000013892) #34	ENSFCAG00000031604	ENSFCAG00000035517	DIP2B (ENSFCAG00000023484) #35
Caniformia	ANCESTRAL SPECIES	19	ENSGT00940000163840	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Caniformia_b	ANCESTRAL SPECIES	17	ENSGT00940000154026.b.b.h.o.b	ENSGT00940000161303.d	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Mustelinae	ANCESTRAL SPECIES	33	ENSGT00940000154026.b.a.a.f.b.a.b	ENSGT00940000161303.c.a	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Ferret	MODERN SPECIES	362	ENSMPUG00000007640	ENSMPUG00000007653	ENSMPUG00000007667 #32	KRT80 (ENSMPUG00000007680)	ATG101 (ENSMPUG00000007692) #12	NR4A1 (ENSMPUG00000007702) #13	TAMALIN (ENSMPUG00000007714) #14	ENSMPUG00000007754	ACVR1B (ENSMPUG00000007757) #15	ACVRL1 (ENSMPUG00000007859) #16	ANKRD33 (ENSMPUG00000007868) #17	FIGNL2 (ENSMPUG00000018973) #18	SCN8A (ENSMPUG00000007873) #19	SLC4A8 (ENSMPUG00000007884) #20	GALNT6 (ENSMPUG00000007894) #21	CELA1 (ENSMPUG00000007901) #22	BIN2 (ENSMPUG00000007963) #23	SMAGP (ENSMPUG00000007976) #24	DAZAP2 (ENSMPUG00000007982) #25	POU6F1 (ENSMPUG00000007990) #26
American mink	MODERN SPECIES	196	ENSNVIG00000004207	KRT7 (ENSNVIG00000004276)	ENSNVIG00000004302 #32	KRT80 (ENSNVIG00000004307)	SMIM41 (ENSNVIG00000004366)	ATG101 (ENSNVIG00000004372) #12	NR4A1 (ENSNVIG00000004383) #13	TAMALIN (ENSNVIG00000004424) #14	ACVR1B (ENSNVIG00000004450) #15	ACVRL1 (ENSNVIG00000004527) #16	ANKRD33 (ENSNVIG00000004586) #17	FIGNL2 (ENSNVIG00000004599) #18	SCN8A (ENSNVIG00000004617) #19	SLC4A8 (ENSNVIG00000004799) #20	GALNT6 (ENSNVIG00000004870) #21	ENSNVIG00000004875 #22	BIN2 (ENSNVIG00000004879) #23	DAZAP2 (ENSNVIG00000004943) #25	POU6F1 (ENSNVIG00000005046) #26	TFCP2 (ENSNVIG00000005073) #27	CSRN2 (ENSNVIG00000005140) #28	LETMD1 (ENSNVIG00000005163) #29	SLC11A2 (ENSNVIG00000005227) #30	HIGD1C (ENSNVIG00000005269) #31	ENSNVIG00000005276 #32	TMPRSS12 (ENSNVIG00000005288) #33	ATF1 (ENSNVIG00000005297) #34	ENSNVIG00000005323	DIP2B (ENSNVIG00000005336) #35	ENSNVIG00000005378	ENSNVIG00000005385
Ursidae	ANCESTRAL SPECIES	36	ENSGT00940000163840	ENSGT00940000154026.b.b.h.o.b	ENSGT00940000161303.d	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a.b #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.d #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Ursus	ANCESTRAL SPECIES	39	ENSGT00940000163840	ENSGT00940000154026.b.b.h.o.b	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a.b.a #13	ENSGT00950000183038.a.b.a.a #13	ENSGT00950000183038.a.b.a.b.b #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685.d #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
American black bear	MODERN SPECIES	3057														SLC4A8 (ENSUAMG00000025780) #20	GALNT6 (ENSUAMG00000025782) #21	CELA1 (ENSUAMG00000025786) #22
Polar bear	MODERN SPECIES	262	KRT82 (ENSUMAG00000009082)	ENSUMAG00000009004	ENSUMAG00000008923	ENSUMAG00000008907	ENSUMAG00000008853	KRT80 (ENSUMAG00000008838)	ATG101 (ENSUMAG00000008834) #12	ENSUMAG00000008828 #13	ENSUMAG00000008825 #13	ENSUMAG00000008818 #14	ACVR1B (ENSUMAG00000008810) #15	ACVRL1 (ENSUMAG00000008800) #16	SCN8A (ENSUMAG00000008671) #19	SLC4A8 (ENSUMAG00000008639) #20	GALNT6 (ENSUMAG00000008609) #21	CELA1 (ENSUMAG00000008597) #22	BIN2 (ENSUMAG00000008591) #23	SMAGP (ENSUMAG00000008588) #24	DAZAP2 (ENSUMAG00000008583) #25	ENSUMAG00000008578 #26	TFCP2 (ENSUMAG00000008566) #27	CSRNP2 (ENSUMAG00000008561) #28	LETMD1 (ENSUMAG00000008550) #29	SLC11A2 (ENSUMAG00000008526) #30	HIGD1C (ENSUMAG00000008515) #31	METTL7A (ENSUMAG00000008512) #32	TMPRSS12 (ENSUMAG00000008499) #33	ATF1 (ENSUMAG00000008491) #34	DIP2B (ENSUMAG00000008478) #35	LARP4 (ENSUMAG00000008473) #36	ENSUMAG00000008467
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	7	ENSAMEG00000006551	ENSAMEG00000001573	ENSAMEG00000001570	ENSAMEG00000001683	ENSAMEG00000025334 #32	ENSAMEG00000001751	ENSAMEG00000001769 #12	NR4A1 (ENSAMEG00000001755) #13	TAMALIN (ENSAMEG00000001756) #14	ACVR1B (ENSAMEG00000001774) #15	ACVRL1 (ENSAMEG00000001811) #16	ANKRD33 (ENSAMEG00000031244) #17	SCN8A (ENSAMEG00000001854) #19	SLC4A8 (ENSAMEG00000001875) #20	GALNT6 (ENSAMEG00000001960) #21	ENSAMEG00000002015 #22	BIN2 (ENSAMEG00000002055) #23	SMAGP (ENSAMEG00000023842) #24	ENSAMEG00000002070 #25	POU6F1 (ENSAMEG00000002092) #26	TFCP2 (ENSAMEG00000002108) #27	CSRNP2 (ENSAMEG00000002168) #28	LETMD1 (ENSAMEG00000002175) #29	SLC11A2 (ENSAMEG00000002188) #30	HIGD1C (ENSAMEG00000024559) #31	ENSAMEG00000029510 #32	ENSAMEG00000029335 #33	ATF1 (ENSAMEG00000002278) #34	DIP2B (ENSAMEG00000002293) #35	LARP4 (ENSAMEG00000001275) #36	ENSAMEG00000001271
Giant Panda	MODERN SPECIES	1893																ENSAMEG00000028726 #22
Canidae	ANCESTRAL SPECIES	8	ENSGT00940000161838.c.a	ENSGT00940000163840	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Canis_lupus	ANCESTRAL SPECIES	14	ENSGT00940000154026.b.a.b.b	ENSGT00940000154026.b.a.a.c	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00990000203730
Dog	MODERN SPECIES	19	KRT85 (ENSCAFG00845026069)	ENSCAFG00845026149	KRT85 (ENSCAFG00845026225)	ENSCAFG00845026351	KRT80 (ENSCAFG00845026613)	ATG101 (ENSCAFG00845026809) #12	NR4A1 (ENSCAFG00845026982) #13	TAMALIN (ENSCAFG00845027316) #14	ACVR1B (ENSCAFG00845027407) #15	ACVRL1 (ENSCAFG00845027472) #16	ANKRD33 (ENSCAFG00845027551) #17	ENSCAFG00845027584 #18	SCN8A (ENSCAFG00845027770) #19	SLC4A8 (ENSCAFG00845014661) #20	GALNT6 (ENSCAFG00845014767) #21	CELA1 (ENSCAFG00845014847) #22	BIN2 (ENSCAFG00845015029) #23	ENSCAFG00845015122 #24	DAZAP2 (ENSCAFG00845015241) #25	POU6F1 (ENSCAFG00845015362) #26	TFCP2 (ENSCAFG00845015460) #27	CSRNP2 (ENSCAFG00845015572) #28	LETMD1 (ENSCAFG00845015645) #29	SLC11A2 (ENSCAFG00845015776) #30	HIGD1C (ENSCAFG00845015926) #31	METTL7A (ENSCAFG00845015966) #32	TMPRSS12 (ENSCAFG00845016120) #33	ATF1 (ENSCAFG00845016253) #34	DIP2B (ENSCAFG00845016416) #35	LARP4 (ENSCAFG00845016911) #36	ENSCAFG00845017048
Dingo	MODERN SPECIES	202	ENSCAFG00020000799	ENSCAFG00020000997	KRT7 (ENSCAFG00020001160)	KRT80 (ENSCAFG00020001176)	SMIM41 (ENSCAFG00020001222)	ATG101 (ENSCAFG00020001226) #12	NR4A1 (ENSCAFG00020001234) #13	TAMALIN (ENSCAFG00020001243) #14	ACVR1B (ENSCAFG00020001251) #15	ACVRL1 (ENSCAFG00020001263) #16	ANKRD33 (ENSCAFG00020001269) #17	ENSCAFG00020001286 #19	ENSCAFG00020001372 #19	SLC4A8 (ENSCAFG00020001474) #20	GALNT6 (ENSCAFG00020001548) #21	CELA1 (ENSCAFG00020001557) #22	BIN2 (ENSCAFG00020001566) #23	SMAGP (ENSCAFG00020001571) #24	DAZAP2 (ENSCAFG00020001573) #25	ENSCAFG00020001576 #26
Red fox	DUPLICATION
Red fox	MODERN SPECIES	32	ENSVVUG00000027798	ENSVVUG00000027792	KRT7 (ENSVVUG00000027789)	KRT80 (ENSVVUG00000027784)	ENSVVUG00000027780	ATG101 (ENSVVUG00000027778) #12	NR4A1 (ENSVVUG00000027773) #13	TAMALIN (ENSVVUG00000027764) #14	ACVR1B (ENSVVUG00000027758) #15	ACVRL1 (ENSVVUG00000027757) #16	ANKRD33 (ENSVVUG00000027756) #17	ENSVVUG00000027755	SCN8A (ENSVVUG00000027742) #19	SLC4A8 (ENSVVUG00000027720) #20	GALNT6 (ENSVVUG00000027714) #21	CELA1 (ENSVVUG00000027712) #22	BIN2 (ENSVVUG00000027704) #23	SMAGP (ENSVVUG00000027700) #24	DAZAP2 (ENSVVUG00000027699) #25	ENSVVUG00000027698 #26	ENSVVUG00000027696 #26	TFCP2 (ENSVVUG00000027694) #27	CSRNP2 (ENSVVUG00000027692) #28	LETMD1 (ENSVVUG00000027690) #29	SLC11A2 (ENSVVUG00000026028) #30	HIGD1C (ENSVVUG00000025929) #31	METTL7A (ENSVVUG00000025922) #32	TMPRSS12 (ENSVVUG00000025918) #33	ATF1 (ENSVVUG00000025915) #34	DIP2B (ENSVVUG00000025511) #35	LARP4 (ENSVVUG00000024717) #36
Red fox	MODERN SPECIES	627																ENSVVUG00000004104 #22
Laurasiatheria_c	ANCESTRAL SPECIES	5	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Chiroptera	ANCESTRAL SPECIES	4	ENSGT00940000154026.b.b.h.o.a.a	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Microchiroptera	ANCESTRAL SPECIES	2	ENSGT00940000163840	ENSGT00940000154026.b.b.h.o.a.a	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Microbat	MODERN SPECIES	1097	ENSMLUG00000010091	KRT7 (ENSMLUG00000010069)	ENSMLUG00000013889 #32	KRT80 (ENSMLUG00000011732)	ATG101 (ENSMLUG00000008876) #12	NR4A1 (ENSMLUG00000006887) #13	ENSMLUG00000004492 #14	ACVR1B (ENSMLUG00000004487) #15	ENSMLUG00000024803	ACVRL1 (ENSMLUG00000001422) #16	ANKRD33 (ENSMLUG00000008906) #17	ENSMLUG00000026338	SCN8A (ENSMLUG00000009841) #19	SLC4A8 (ENSMLUG00000010105) #20	GALNT6 (ENSMLUG00000010079) #21	CELA1 (ENSMLUG00000010049) #22	BIN2 (ENSMLUG00000010014) #23	SMAGP (ENSMLUG00000009986) #24	ENSMLUG00000009959 #25	POU6F1 (ENSMLUG00000009933) #26	TFCP2 (ENSMLUG00000013918) #27	CSRNP2 (ENSMLUG00000013915) #28	LETMD1 (ENSMLUG00000013907) #29
Greater horseshoe bat	MODERN SPECIES	1	ENSRFEG00010018321	KRT7 (ENSRFEG00010018252)	ENSRFEG00010018209 #32	KRT80 (ENSRFEG00010018028)	SMIM41 (ENSRFEG00010018005)	ATG101 (ENSRFEG00010017982) #12	NR4A1 (ENSRFEG00010017879) #13	TAMALIN (ENSRFEG00010017802) #14	ACVR1B (ENSRFEG00010017734) #15	ACVRL1 (ENSRFEG00010017527) #16	ENSRFEG00010017471 #17	ENSRFEG00010017220	SCN8A (ENSRFEG00010017085) #19	SLC4A8 (ENSRFEG00010016982) #20	GALNT6 (ENSRFEG00010016956) #21	CELA1 (ENSRFEG00010016934) #22	BIN2 (ENSRFEG00010016668) #23	ENSRFEG00010016566 #24	DAZAP2 (ENSRFEG00010016144) #25	POU6F1 (ENSRFEG00010016067) #26	ENSRFEG00010016033	TFCP2 (ENSRFEG00010015869) #27	CSRNP2 (ENSRFEG00010015798) #28	LETMD1 (ENSRFEG00010015608) #29	SLC11A2 (ENSRFEG00010015532) #30	HIGD1C (ENSRFEG00010015467) #31	ENSRFEG00010015409	ENSRFEG00010015370 #32	TMPRSS12 (ENSRFEG00010015273) #33	ATF1 (ENSRFEG00010015182) #34	DIP2B (ENSRFEG00010015063) #35
Megabat	MODERN SPECIES	1067																CELA1 (ENSPVAG00000014782) #22	BIN2 (ENSPVAG00000014781) #23	SMAGP (ENSPVAG00000014778) #24	DAZAP2 (ENSPVAG00000014777) #25	POU6F1 (ENSPVAG00000014775) #26	TFCP2 (ENSPVAG00000014772) #27	CSRNP2 (ENSPVAG00000014770) #28	LETMD1 (ENSPVAG00000014768) #29
Equus	ANCESTRAL SPECIES	16	ENSGT00940000161303	ENSGT00940000154786.f #32	ENSGT00940000161279	ENSGT00390000009755	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629.f #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786.e #32	ENSGT00940000168617	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Donkey	MODERN SPECIES	14	ENSEASG00005028172	KRT7 (ENSEASG00005008820)	ENSEASG00005008814 #32	KRT80 (ENSEASG00005024921)	SMIM41 (ENSEASG00005008797)	ATG101 (ENSEASG00005036805) #12	NR4A1 (ENSEASG00005008782) #13	TAMALIN (ENSEASG00005008779) #14	ACVR1B (ENSEASG00005008768) #15	ACVRL1 (ENSEASG00005008753) #16	ENSEASG00005038500 #17	ENSEASG00005036724	SCN8A (ENSEASG00005008696) #19	SLC4A8 (ENSEASG00005006225) #20	GALNT6 (ENSEASG00005006013) #21	CELA1 (ENSEASG00005006009) #22	BIN2 (ENSEASG00005006006) #23	ENSEASG00005030464 #24	DAZAP2 (ENSEASG00005023725) #25	POU6F1 (ENSEASG00005005986) #26	TFCP2 (ENSEASG00005005976) #27	CSRNP2 (ENSEASG00005005970) #28	LETMD1 (ENSEASG00005005963) #29	SLC11A2 (ENSEASG00005005951) #30	HIGD1C (ENSEASG00005024715) #31	ENSEASG00005005942 #32	ENSEASG00005005941	TMPRSS12 (ENSEASG00005005935) #33	ATF1 (ENSEASG00005005929) #34	DIP2B (ENSEASG00005005081) #35	LARP4 (ENSEASG00005004356) #36
Horse	MODERN SPECIES	27	ENSECAG00000002542	KRT7 (ENSECAG00000020216)	ENSECAG00000012490 #32	KRT80 (ENSECAG00000019176)	ATG101 (ENSECAG00000019169) #12	NR4A1 (ENSECAG00000016661) #13	TAMALIN (ENSECAG00000043794) #14	ACVR1B (ENSECAG00000011686) #15	ACVRL1 (ENSECAG00000009133) #16	ANKRD33 (ENSECAG00000008512) #17	FIGNL2 (ENSECAG00000028937) #18	ENSECAG00000057433	SCN8A (ENSECAG00000010751) #19	SLC4A8 (ENSECAG00000016910) #20	GALNT6 (ENSECAG00000016337) #21	CELA1 (ENSECAG00000012394) #22	BIN2 (ENSECAG00000009046) #23	ENSECAG00000047970 #24	DAZAP2 (ENSECAG00000007313) #25	POU6F1 (ENSECAG00000024200) #26	TFCP2 (ENSECAG00000020650) #27	CSRNP2 (ENSECAG00000020403) #28	LETMD1 (ENSECAG00000014209) #29	SLC11A2 (ENSECAG00000020056) #30	HIGD1C (ENSECAG00000013371) #31	ENSECAG00000027812	TMPRSS12 (ENSECAG00000009548) #33	METTL7A (ENSECAG00000020202) #32	ENSECAG00000048892	ATF1 (ENSECAG00000016445) #34	DIP2B (ENSECAG00000017791) #35
Eulipotyphla	ANCESTRAL SPECIES	177															ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000000685 #25	ENSGT00940000160106 #26
Hedgehog	MODERN SPECIES	7506															GALNT6 (ENSEEUG00000008691) #21	ENSEEUG00000008674 #22	BIN2 (ENSEEUG00000008622) #23	ENSEEUG00000008595	DAZAP2 (ENSEEUG00000008563) #25
Common shrew	DUPLICATION
Common shrew	MODERN SPECIES	6948																ENSSARG00000009886 #22
Common shrew	MODERN SPECIES	2810																ENSSARG00000010916 #22
Atlantogenata	ANCESTRAL SPECIES	33	ENSGT00940000164369	ENSGT00940000154026.b.b	ENSGT00940000163840	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Afrotheria	ANCESTRAL SPECIES	40	ENSGT00940000164369	ENSGT00940000154026.b.b	ENSGT00940000163840	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Afrotheria_a	ANCESTRAL SPECIES	40	ENSGT00940000164369	ENSGT00940000154026.b.b	ENSGT00940000163840	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Hyrax	MODERN SPECIES	6215														ENSPCAG00000012652 #20	GALNT6 (ENSPCAG00000012566) #21	CELA1 (ENSPCAG00000012513) #22	BIN2 (ENSPCAG00000012402) #23	SMAGP (ENSPCAG00000012320) #24	DAZAP2 (ENSPCAG00000012282) #25
Xenarthra	ANCESTRAL SPECIES	170														ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT00940000154786 #32	ENSGT00940000161878 #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36	ENSGT00940000163376
Armadillo	MODERN SPECIES	1062														SLC4A8 (ENSDNOG00000016961) #20	GALNT6 (ENSDNOG00000031434) #21	CELA1 (ENSDNOG00000019534) #22	BIN2 (ENSDNOG00000037336) #23	DAZAP2 (ENSDNOG00000040311) #25	POU6F1 (ENSDNOG00000009291) #26	TFCP2 (ENSDNOG00000017309) #27	CSRNP2 (ENSDNOG00000023591) #28	LETMD1 (ENSDNOG00000047600) #29	SLC11A2 (ENSDNOG00000000724) #30	HIGD1C (ENSDNOG00000033730) #31	ENSDNOG00000036666 #32	ENSDNOG00000031675 #32	ENSDNOG00000042206	TMPRSS12 (ENSDNOG00000009890) #33	ATF1 (ENSDNOG00000006951) #34	DIP2B (ENSDNOG00000004136) #35	LARP4 (ENSDNOG00000038525) #36
Sloth	MODERN SPECIES	13565																CELA1 (ENSCHOG00000000981) #22
Marsupialia	ANCESTRAL SPECIES	24	ENSGT00940000164369	ENSGT00940000161838	ENSGT00940000154026.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154786 #32	ENSGT00940000161878.a.b #33	ENSGT00940000161878.b #33	ENSGT00940000161878.a.a #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Marsupialia_b	ANCESTRAL SPECIES	12	ENSGT00940000154026.b	ENSGT00940000154026.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00970000198297	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154786 #32	ENSGT00940000161878.a.b #33	ENSGT00940000161878.b #33	ENSGT00940000161878.a.a #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Diprotodontia	ANCESTRAL SPECIES	29	ENSGT00940000154026.b	ENSGT00940000154026.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00970000198297	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154786 #32	ENSGT00940000161878.a.b #33	ENSGT00940000161878.b #33	ENSGT00940000161878.a.a #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Diprotodontia_a	ANCESTRAL SPECIES	29	ENSGT00940000154026.b	ENSGT00940000154026.a.b	ENSGT00940000161303	ENSGT00940000161279	ENSGT00970000198297	ENSGT00390000016511 #12	ENSGT00950000183038.a.b.a #13	ENSGT00530000063734.b #14	ENSGT00940000157032 #15	ENSGT00940000161446 #16	ENSGT00500000044852.b #17	ENSGT00940000161971 #18	ENSGT00960000186993	ENSGT00940000156263 #19	ENSGT00940000157422 #20	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154786 #32	ENSGT00940000161878.a.b #33	ENSGT00940000161878.b #33	ENSGT00940000161878.a.a #33	ENSGT00940000158200 #34	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000154409 #36
Common wonbat	MODERN SPECIES	1128	ENSVURG00010007842	KRT7 (ENSVURG00010007830)	KRT80 (ENSVURG00010007815)	ENSVURG00010007804	ATG101 (ENSVURG00010007798) #12	NR4A1 (ENSVURG00010007769) #13	TAMALIN (ENSVURG00010007754) #14	ACVR1B (ENSVURG00010007747) #15	ACVRL1 (ENSVURG00010007737) #16	ANKRD33 (ENSVURG00010007731) #17	FIGNL2 (ENSVURG00010007719) #18	ENSVURG00010007715	SCN8A (ENSVURG00010007644) #19	ENSVURG00010007622	SLC4A8 (ENSVURG00010007558) #20	CELA1 (ENSVURG00010007524) #22	ENSVURG00010007496 #23	ENSVURG00010007477 #24	ENSVURG00010007459 #25	POU6F1 (ENSVURG00010007440) #26	TFCP2 (ENSVURG00010007416) #27	CSRNP2 (ENSVURG00010007407) #28	LETMD1 (ENSVURG00010007360) #29	SLC11A2 (ENSVURG00010007263) #30	METTL7A (ENSVURG00010007245) #32	ENSVURG00010007237 #33	ENSVURG00010007229 #33	ENSVURG00010007214 #34	ENSVURG00010007206	DIP2B (ENSVURG00010007105) #35	LARP4 (ENSVURG00010006998) #36
koala	MODERN SPECIES	165	ENSPCIG00000027480	ENSPCIG00000027505	ENSPCIG00000027521	KRT7 (ENSPCIG00000027526)	KRT80 (ENSPCIG00000033506)	ENSPCIG00000025524	ATG101 (ENSPCIG00000036649) #12	NR4A1 (ENSPCIG00000025527) #13	TAMALIN (ENSPCIG00000035688) #14	ACVR1B (ENSPCIG00000034836) #15	ACVRL1 (ENSPCIG00000012160) #16	ANKRD33 (ENSPCIG00000012163) #17	ENSPCIG00000012182	SCN8A (ENSPCIG00000012175) #19	SLC4A8 (ENSPCIG00000012230) #20	ENSPCIG00000023166 #22	ENSPCIG00000026238 #23	SMAGP (ENSPCIG00000016115) #24	ENSPCIG00000016116 #25	POU6F1 (ENSPCIG00000016117) #26	TFCP2 (ENSPCIG00000016118) #27	CSRNP2 (ENSPCIG00000016119) #28	LETMD1 (ENSPCIG00000016120) #29	SLC11A2 (ENSPCIG00000016121) #30	METTL7A (ENSPCIG00000031107) #32	ENSPCIG00000016123 #33	ENSPCIG00000000211 #33	ENSPCIG00000000230 #33	ATF1 (ENSPCIG00000000249) #34	DIP2B (ENSPCIG00000000312) #35	LARP4 (ENSPCIG00000000384) #36
Wallaby	MODERN SPECIES	4712																CELA1 (ENSMEUG00000006944) #22	ENSMEUG00000006923 #23
Tasmanian devil	MODERN SPECIES	4	ENSSHAG00000014356	ENSSHAG00000013880	ENSSHAG00000014072	ENSSHAG00000014183	KRT7 (ENSSHAG00000013768)	KRT80 (ENSSHAG00000013195)	ENSSHAG00000023629	NR4A1 (ENSSHAG00000020590) #13	TAMALIN (ENSSHAG00000030706) #14	ACVR1B (ENSSHAG00000031029) #15	ACVRL1 (ENSSHAG00000011355) #16	ANKRD33 (ENSSHAG00000011205) #17	FIGNL2 (ENSSHAG00000025074) #18	SCN8A (ENSSHAG00000009545) #19	SLC4A8 (ENSSHAG00000007676) #20	CELA1 (ENSSHAG00000006735) #22	ENSSHAG00000005894 #23	ENSSHAG00000027494 #24	DAZAP2 (ENSSHAG00000005151) #25	POU6F1 (ENSSHAG00000003829) #26	TFCP2 (ENSSHAG00000025031) #27	CSRNP2 (ENSSHAG00000026283) #28	LETMD1 (ENSSHAG00000002620) #29	ENSSHAG00000026379 #30	ENSSHAG00000004038 #30	METTL7A (ENSSHAG00000021209) #32	ENSSHAG00000001705 #33	ENSSHAG00000000245 #33	ENSSHAG00000001466 #33	ATF1 (ENSSHAG00000004637) #34	DIP2B (ENSSHAG00000005854) #35
Sauria	ANCESTRAL SPECIES	25	ENSGT00940000162738.j.a.b	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.j.b.b	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT01070000257243	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840
Lepidosauria	ANCESTRAL SPECIES	68	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.j.b.b.b	ENSGT00940000162738.j.b.b.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840
Episquamata	ANCESTRAL SPECIES	4	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.j.b.b.b	ENSGT00940000162738.j.b.b.a.b	ENSGT00940000162738.j.b.b.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00940000161557.a.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840
Toxicofera	ANCESTRAL SPECIES	19	ENSGT00390000009597	ENSGT00940000162738.j.b.a	ENSGT00940000162738.j.b.b.b	ENSGT00940000162738.j.b.b.a.b	ENSGT00940000162738.j.b.b.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00940000161557.a.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b
Lizard	DUPLICATION
Lizard	DUPLICATION
Lizard	MODERN SPECIES	1	ENSACAG00000004776	UXT (ENSACAG00000004754)	ELK1 (ENSACAG00000004726)	ENSACAG00000004710	ENSACAG00000040588	CFP (ENSACAG00000010932)	ENSACAG00000036893	ENSACAG00000029444	ENSACAG00000041669	SYN1 (ENSACAG00000010994)	ARAF (ENSACAG00000011249)	ENSACAG00000024977	ENSACAG00000011281 #20	ENSACAG00000011824	GALNT6 (ENSACAG00000011826) #21	ENSACAG00000041398 #22	ENSACAG00000036202 #22	ENSACAG00000012038 #22	SMAGP (ENSACAG00000045063) #24	DAZAP2 (ENSACAG00000012222) #25	ENSACAG00000012248 #26	ENSACAG00000036208 #26	TFCP2 (ENSACAG00000012289) #27	CSRNP2 (ENSACAG00000012424) #28	LETMD1 (ENSACAG00000024248) #29	SLC11A2 (ENSACAG00000012447) #30	HIGD1C (ENSACAG00000012703) #31	ENSACAG00000039232	ENSACAG00000035108	CTDSP2 (ENSACAG00000037920)	AVIL (ENSACAG00000012787)
Lizard	MODERN SPECIES	1	ELK1 (ENSACAG00000004726)	ENSACAG00000004710	ENSACAG00000040588	CFP (ENSACAG00000010932)	ENSACAG00000036893	ENSACAG00000029444	ENSACAG00000041669	SYN1 (ENSACAG00000010994)	ARAF (ENSACAG00000011249)	ENSACAG00000024977	ENSACAG00000011281 #20	ENSACAG00000011824	GALNT6 (ENSACAG00000011826) #21	ENSACAG00000041398 #22	ENSACAG00000036202 #22	ENSACAG00000012038 #22	SMAGP (ENSACAG00000045063) #24	DAZAP2 (ENSACAG00000012222) #25	ENSACAG00000012248 #26	ENSACAG00000036208 #26	TFCP2 (ENSACAG00000012289) #27	CSRNP2 (ENSACAG00000012424) #28	LETMD1 (ENSACAG00000024248) #29	SLC11A2 (ENSACAG00000012447) #30	HIGD1C (ENSACAG00000012703) #31	ENSACAG00000039232	ENSACAG00000035108	CTDSP2 (ENSACAG00000037920)	AVIL (ENSACAG00000012787)	TSFM (ENSACAG00000013044)	EEF1AKMT3 (ENSACAG00000035428)
Lizard	MODERN SPECIES	1	UXT (ENSACAG00000004754)	ELK1 (ENSACAG00000004726)	ENSACAG00000004710	ENSACAG00000040588	CFP (ENSACAG00000010932)	ENSACAG00000036893	ENSACAG00000029444	ENSACAG00000041669	SYN1 (ENSACAG00000010994)	ARAF (ENSACAG00000011249)	ENSACAG00000024977	ENSACAG00000011281 #20	ENSACAG00000011824	GALNT6 (ENSACAG00000011826) #21	ENSACAG00000041398 #22	ENSACAG00000036202 #22	ENSACAG00000012038 #22	SMAGP (ENSACAG00000045063) #24	DAZAP2 (ENSACAG00000012222) #25	ENSACAG00000012248 #26	ENSACAG00000036208 #26	TFCP2 (ENSACAG00000012289) #27	CSRNP2 (ENSACAG00000012424) #28	LETMD1 (ENSACAG00000024248) #29	SLC11A2 (ENSACAG00000012447) #30	HIGD1C (ENSACAG00000012703) #31	ENSACAG00000039232	ENSACAG00000035108	CTDSP2 (ENSACAG00000037920)	AVIL (ENSACAG00000012787)	TSFM (ENSACAG00000013044)
tuatara	MODERN SPECIES	1722		ENSSPUG00000007740	ENSSPUG00000007610	ENSSPUG00000007573	ENSSPUG00000007553	ENSSPUG00000007529	KRT80 (ENSSPUG00000007486)	BCDIN3D (ENSSPUG00000007468)	FAIM2 (ENSSPUG00000007377)	AQP2 (ENSSPUG00000007363)	AQP5 (ENSSPUG00000007350)	ENSSPUG00000007291	ENSSPUG00000007273	SLC4A8 (ENSSPUG00000006895) #20	GALNT6 (ENSSPUG00000006755) #21	CELA1 (ENSSPUG00000006736) #22	BIN2 (ENSSPUG00000006703) #23	ENSSPUG00000006678	DAZAP2 (ENSSPUG00000006650) #25	ENSSPUG00000006643	POU6F1 (ENSSPUG00000006629) #26	TFCP2 (ENSSPUG00000006579) #27	CSRNP2 (ENSSPUG00000006567) #28	LETMD1 (ENSSPUG00000006556) #29	SLC11A2 (ENSSPUG00000006538) #30	HIGD1C (ENSSPUG00000006517) #31	CTDSP2 (ENSSPUG00000006499)	AVIL (ENSSPUG00000006451)	TSFM (ENSSPUG00000006435)	EEF1AKMT3 (ENSSPUG00000006426)	METTL1 (ENSSPUG00000006381)
Archelosauria	ANCESTRAL SPECIES	26	ENSGT00940000161853	ENSGT00940000155862.a.b.b	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840
Archosauria	ANCESTRAL SPECIES	33	ENSGT00940000162738.j.a.b	ENSGT00940000155862.a.b.b	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01040000240451.a.b.a	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000158208
Aves	ANCESTRAL SPECIES	41	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT01040000240451.a.b.a	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000154770
Neognathae	ANCESTRAL SPECIES	40	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000154770	ENSGT00940000160351
Galloanserae	ANCESTRAL SPECIES	40	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000154770	ENSGT00940000160351
Anatidae	ANCESTRAL SPECIES	74	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30
Pink-footed goose	MODERN SPECIES	375	ENSABRG00000004833	ENSABRG00000004847	ENSABRG00000004861	ENSABRG00000004933	ENSABRG00000005005	ENSABRG00000005011	ENSABRG00000005050	KRT80 (ENSABRG00000005086)	BCDIN3D (ENSABRG00000005094)	FAIM2 (ENSABRG00000005101)	AQP2 (ENSABRG00000005113)	AQP5 (ENSABRG00000005122)	ENSABRG00000005126	SLC4A8 (ENSABRG00000005146) #20	GALNT6 (ENSABRG00000005218) #21	CELA1 (ENSABRG00000005231) #22	BIN2 (ENSABRG00000005240) #23	SMAGP (ENSABRG00000005260) #24	DAZAP2 (ENSABRG00000005270) #25	ENSABRG00000005276	POU6F1 (ENSABRG00000005280) #26	TFCP2 (ENSABRG00000005287) #27	CSRNP2 (ENSABRG00000005314) #28	LETMD1 (ENSABRG00000005327) #29	SLC11A2 (ENSABRG00000005339) #30
Duck	MODERN SPECIES	30	ENSAPLG00000004524	ENSAPLG00000006301	ENSAPLG00000004897	ENSAPLG00000018367	ENSAPLG00000026114	ENSAPLG00000025066	ENSAPLG00000000589	KRT80 (ENSAPLG00000015884)	BCDIN3D (ENSAPLG00000000887)	FAIM2 (ENSAPLG00000015532)	AQP2 (ENSAPLG00000015514)	AQP5 (ENSAPLG00000015507)	ENSAPLG00000019104	SLC4A8 (ENSAPLG00000013942) #20	GALNT6 (ENSAPLG00000013611) #21	CELA1 (ENSAPLG00000013234) #22	BIN2 (ENSAPLG00000028612) #23	DAZAP2 (ENSAPLG00000024725) #25	FIGNL2 (ENSAPLG00000030252) #18	SCN8A (ENSAPLG00000010964) #19	ENSAPLG00000012504 #32	ENSAPLG00000017116 #32	ENSAPLG00000012509	ATF1 (ENSAPLG00000012521) #34	DIP2B (ENSAPLG00000012628) #35	LARP4 (ENSAPLG00000013661) #36	LIMA1 (ENSAPLG00000006766)	CERS5 (ENSAPLG00000006809)	SMARCD1 (ENSAPLG00000006874)	ASIC1 (ENSAPLG00000006928)	RACGAP1 (ENSAPLG00000006988)
Phasianidae	ANCESTRAL SPECIES	25	ENSGT00940000162175	ENSGT00940000155862.a.a.a.a.b.a.b.a.b	ENSGT00940000155862.a.a.a.a.b.a.b.a.a	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00940000154770	ENSGT00940000160351
Phasianidae_b	ANCESTRAL SPECIES	35	ENSGT00940000155862.a.a.a.a.b.a.a	ENSGT00940000155862.a.a.a.a.b.a.b.a.b	ENSGT00940000155862.a.a.a.a.b.a.b.a.a	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00390000016293	ENSGT00390000003427	ENSGT00940000159439	ENSGT00940000156890.a.a
Chicken	MODERN SPECIES	27	KRT6A (ENSGALG00010024140)	KRT75 (ENSGALG00010024156)	ENSGALG00010024176	KRT7 (ENSGALG00010024197)	ENSGALG00010024202	KRT80 (ENSGALG00010024206)	BCDIN3D (ENSGALG00010024225)	FAIM2 (ENSGALG00010024233)	AQP2 (ENSGALG00010025593)	ENSGALG00010025602	AQP5 (ENSGALG00010025615)	ENSGALG00010025626	ENSGALG00010025482	SLC4A8 (ENSGALG00010025488) #20	GALNT6 (ENSGALG00010023805) #21	CELA1 (ENSGALG00010023813) #22	BIN2 (ENSGALG00010023819) #23	SMAGP (ENSGALG00010023840) #24	DAZAP2 (ENSGALG00010023850) #25	ENSGALG00010023867	POU6F1 (ENSGALG00010023876) #26	TFCP2 (ENSGALG00010023911) #27	CSRNP2 (ENSGALG00010023931) #28	LETMD1 (ENSGALG00010023945) #29	SLC11A2 (ENSGALG00010023546) #30	ENSGALG00010023595	ENSGALG00010023604	ENSGALG00010025755	DCTN2 (ENSGALG00010023638)	KIF5A (ENSGALG00010023736)	ENSGALG00010023827
Turkey	MODERN SPECIES	24	ENSMGAG00000020370	ENSMGAG00000017568	ENSMGAG00000019985	ENSMGAG00000010973	ENSMGAG00000017070	ENSMGAG00000022581	ENSMGAG00000011071	ENSMGAG00000017303	BCDIN3D (ENSMGAG00000022595)	FAIM2 (ENSMGAG00000011143)	AQP2 (ENSMGAG00000011160)	AQP5 (ENSMGAG00000010678)	ENSMGAG00000016656	SLC4A8 (ENSMGAG00000010683) #20	GALNT6 (ENSMGAG00000010723) #21	CELA1 (ENSMGAG00000001752) #22	BIN2 (ENSMGAG00000001776) #23	ENSMGAG00000013322	ENSMGAG00000022422	ENSMGAG00000013317	ENSMGAG00000020706	ENSMGAG00000013315	ENSMGAG00000022921	ENSMGAG00000013296	ENSMGAG00000018045	ENSMGAG00000021849	ENSMGAG00000021557	ENSMGAG00000013290	ENSMGAG00000013285	ENSMGAG00000022598	ENSMGAG00000019976
Japanese quail	MODERN SPECIES	497	ENSCJPG00005003672	ENSCJPG00005003673	ENSCJPG00005003678	ENSCJPG00005003681	ENSCJPG00005003682	KRT84 (ENSCJPG00005003685)	ENSCJPG00005003690	KRT80 (ENSCJPG00005003693)	BCDIN3D (ENSCJPG00005003702)	FAIM2 (ENSCJPG00005003704)	AQP2 (ENSCJPG00005003721)	AQP5 (ENSCJPG00005003722)	ENSCJPG00005003723	SLC4A8 (ENSCJPG00005003729) #20	GALNT6 (ENSCJPG00005004445) #21	CELA1 (ENSCJPG00005004446) #22	BIN2 (ENSCJPG00005004462) #23	ENSCJPG00005004463	DAZAP2 (ENSCJPG00005004464) #25	POU6F1 (ENSCJPG00005004466) #26	TFCP2 (ENSCJPG00005004467) #27	CSRNP2 (ENSCJPG00005004468) #28	ENSCJPG00005004469 #29	SLC11A2 (ENSCJPG00005004470) #30	TSFM (ENSCJPG00005004474)	EEF1AKMT3 (ENSCJPG00005004477)	METTL1 (ENSCJPG00005004484)	CYP27B1 (ENSCJPG00005004485)	CDK4 (ENSCJPG00005004487)	TSPAN31 (ENSCJPG00005004488)	ENSCJPG00005004493
Neognathae_b	ANCESTRAL SPECIES	37	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b	ENSGT00950000182860.a.b.a	ENSGT00550000075017
Passeriformes	ANCESTRAL SPECIES	32	ENSGT00940000155862.a.a.a.a.b.a.b.a.a	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00550000075017	ENSGT00390000006305	ENSGT00390000003427	ENSGT00940000159439	ENSGT01030000234815
Passeriformes_d	ANCESTRAL SPECIES	39	ENSGT00940000155862.a.a.a.a.b.a.b.a.a	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00550000075017	ENSGT00390000003427	ENSGT00940000159439	ENSGT01030000234815
Passeriformes_g	ANCESTRAL SPECIES	47	ENSGT00940000155862.a.a.a.a.b.b.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.a.a.a.b.b.b.b	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00550000075017	ENSGT00390000003427	ENSGT00940000159439	ENSGT01030000234815
Passeroidea	ANCESTRAL SPECIES	50	ENSGT00940000155862.a.a.a.a.b.b.b.a	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.a.a.a.b.b.b.b	ENSGT00940000155862.a.a.a.a.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00550000075017	ENSGT00390000003427	ENSGT00940000159439	ENSGT01030000234815
Zebra finch	DUPLICATION
Zebra finch	DUPLICATION
Zebra finch	MODERN SPECIES	22	ENSTGUG00000027201	ENSTGUG00000019319	ENSTGUG00000003913	ENSTGUG00000025188	ENSTGUG00000004022	ENSTGUG00000024866	KRT80 (ENSTGUG00000025828)	BCDIN3D (ENSTGUG00000020510)	FAIM2 (ENSTGUG00000027219)	AQP2 (ENSTGUG00000022423)	AQP5 (ENSTGUG00000022648)	ENSTGUG00000022541	SLC4A8 (ENSTGUG00000004172) #20	GALNT6 (ENSTGUG00000024340) #21	ENSTGUG00000025530 #22	ENSTGUG00000023174 #22	ENSTGUG00000015682 #22	BIN2 (ENSTGUG00000019844) #23	SMAGP (ENSTGUG00000020571) #24	POU6F1 (ENSTGUG00000019686) #26	TFCP2 (ENSTGUG00000023196) #27
Zebra finch	MODERN SPECIES	22	ENSTGUG00000029223	ENSTGUG00000027201	ENSTGUG00000019319	ENSTGUG00000003913	ENSTGUG00000025188	ENSTGUG00000004022	ENSTGUG00000024866	KRT80 (ENSTGUG00000025828)	BCDIN3D (ENSTGUG00000020510)	FAIM2 (ENSTGUG00000027219)	AQP2 (ENSTGUG00000022423)	AQP5 (ENSTGUG00000022648)	ENSTGUG00000022541	SLC4A8 (ENSTGUG00000004172) #20	GALNT6 (ENSTGUG00000024340) #21	ENSTGUG00000025530 #22	ENSTGUG00000023174 #22	ENSTGUG00000015682 #22	BIN2 (ENSTGUG00000019844) #23	SMAGP (ENSTGUG00000020571) #24	POU6F1 (ENSTGUG00000019686) #26	TFCP2 (ENSTGUG00000023196) #27
Zebra finch	MODERN SPECIES	22												TFCP2 (ENSTGUG00000023196) #27	POU6F1 (ENSTGUG00000019686) #26	SMAGP (ENSTGUG00000020571) #24	BIN2 (ENSTGUG00000019844) #23	ENSTGUG00000015682 #22	ENSTGUG00000023174 #22	ENSTGUG00000025530 #22	GALNT6 (ENSTGUG00000024340) #21	SLC4A8 (ENSTGUG00000004172) #20	ENSTGUG00000022541	AQP5 (ENSTGUG00000022648)	AQP2 (ENSTGUG00000022423)	FAIM2 (ENSTGUG00000027219)	BCDIN3D (ENSTGUG00000020510)	KRT80 (ENSTGUG00000025828)	ENSTGUG00000024866	ENSTGUG00000004022	ENSTGUG00000025188	ENSTGUG00000003913	ENSTGUG00000019319
Flycatcher	MODERN SPECIES	559	ENSFALG00000004422	ENSFALG00000004425	ENSFALG00000027149	ENSFALG00000004450	ENSFALG00000004483	ENSFALG00000004581	ENSFALG00000025346	KRT80 (ENSFALG00000004631)	ENSFALG00000004640	ENSFALG00000004642	ENSFALG00000004648	ENSFALG00000025254	ENSFALG00000027896	SLC4A8 (ENSFALG00000004666) #20	GALNT6 (ENSFALG00000004694) #21	CELA1 (ENSFALG00000004706) #22	ENSFALG00000025285	TFCP2 (ENSFALG00000004724) #27	ENSFALG00000000093 #17	ENSFALG00000000094	ACVR1B (ENSFALG00000000096) #15	TAMALIN (ENSFALG00000027994) #14	NR4A1 (ENSFALG00000000099) #13	ATG101 (ENSFALG00000000102) #12	ENSFALG00000000105	ENSFALG00000026868	KANSL2 (ENSFALG00000000115)	CCNT1 (ENSFALG00000000124)	ADCY6 (ENSFALG00000000126)	CACNB3 (ENSFALG00000000129)	DDX23 (ENSFALG00000000133)
Great tit	DUPLICATION
Great tit	MODERN SPECIES	328													ENSPMJG00000013479 #26	DAZAP2 (ENSPMJG00000013478) #25	BIN2 (ENSPMJG00000013477) #23	ENSPMJG00000013476 #22
Great tit	MODERN SPECIES	640	ENSPMJG00000001728	ENSPMJG00000000898	ENSPMJG00000000753	ENSPMJG00000000741	ENSPMJG00000000055	ENSPMJG00000016009	ENSPMJG00000016008	KRT80 (ENSPMJG00000016007)	BCDIN3D (ENSPMJG00000016005)	FAIM2 (ENSPMJG00000016004)	AQP2 (ENSPMJG00000016003)	AQP5 (ENSPMJG00000016002)	ENSPMJG00000016001	SLC4A8 (ENSPMJG00000014774) #20	GALNT6 (ENSPMJG00000014771) #21	ENSPMJG00000014770 #22	SCN8A (ENSPMJG00000014704) #19	METTL7A (ENSPMJG00000014702) #32	ENSPMJG00000014701	ATF1 (ENSPMJG00000014700) #34	DIP2B (ENSPMJG00000013259) #35	LARP4 (ENSPMJG00000013255) #36	ENSPMJG00000013254	ENSPMJG00000013253	CERS5 (ENSPMJG00000013252)	ENSPMJG00000013251	GPD1 (ENSPMJG00000013076)	SMARCD1 (ENSPMJG00000012966)	ASIC1 (ENSPMJG00000012925)	ENSPMJG00000012924	RACGAP1 (ENSPMJG00000012923)
Neognathae_c	ANCESTRAL SPECIES	40	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b.a	ENSGT00940000155862.a.b.a.b.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00390000005372.d	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b
Kakapo	DUPLICATION
Kakapo	MODERN SPECIES	15	TMEM106C (ENSSHBG00005020552)	VDR (ENSSHBG00005020542)	MYG1 (ENSSHBG00005020536)	AAAS (ENSSHBG00005020532)	SP7 (ENSSHBG00005020523)	SP1 (ENSSHBG00005020520)	AMHR2 (ENSSHBG00005020511)	PCBP2 (ENSSHBG00005020490)	ENSSHBG00005020472	ENSSHBG00005020466	MAP3K12 (ENSSHBG00005020459)	TARBP2 (ENSSHBG00005020456)	SLC4A8 (ENSSHBG00005020437) #20	GALNT6 (ENSSHBG00005020420) #21	ENSSHBG00005020411 #22	ENSSHBG00005020406 #22	BIN2 (ENSSHBG00005020400) #23	SMAGP (ENSSHBG00005020396) #24	DAZAP2 (ENSSHBG00005020394) #25	POU6F1 (ENSSHBG00005020384) #26	TFCP2 (ENSSHBG00005020368) #27	CSRNP2 (ENSSHBG00005020358) #28	LETMD1 (ENSSHBG00005020353) #29	SLC11A2 (ENSSHBG00005020345) #30	TSFM (ENSSHBG00005020343)	ENSSHBG00005020342	METTL1 (ENSSHBG00005020338)	CYP27B1 (ENSSHBG00005020336)	ENSSHBG00005020284	ENSSHBG00005020270	ENSSHBG00005020264
Kakapo	MODERN SPECIES	15	COL2A1 (ENSSHBG00005020568)	TMEM106C (ENSSHBG00005020552)	VDR (ENSSHBG00005020542)	MYG1 (ENSSHBG00005020536)	AAAS (ENSSHBG00005020532)	SP7 (ENSSHBG00005020523)	SP1 (ENSSHBG00005020520)	AMHR2 (ENSSHBG00005020511)	PCBP2 (ENSSHBG00005020490)	ENSSHBG00005020472	ENSSHBG00005020466	MAP3K12 (ENSSHBG00005020459)	TARBP2 (ENSSHBG00005020456)	SLC4A8 (ENSSHBG00005020437) #20	GALNT6 (ENSSHBG00005020420) #21	ENSSHBG00005020411 #22	ENSSHBG00005020406 #22	BIN2 (ENSSHBG00005020400) #23	SMAGP (ENSSHBG00005020396) #24	DAZAP2 (ENSSHBG00005020394) #25	POU6F1 (ENSSHBG00005020384) #26	TFCP2 (ENSSHBG00005020368) #27	CSRNP2 (ENSSHBG00005020358) #28	LETMD1 (ENSSHBG00005020353) #29	SLC11A2 (ENSSHBG00005020345) #30	TSFM (ENSSHBG00005020343)	ENSSHBG00005020342	METTL1 (ENSSHBG00005020338)	CYP27B1 (ENSSHBG00005020336)	ENSSHBG00005020284	ENSSHBG00005020270
Golden eagle	MODERN SPECIES	6	ENSACCG00020016805	ENSACCG00020016811	ENSACCG00020016817	ENSACCG00020016824	ENSACCG00020016832	ENSACCG00020016835	ENSACCG00020016839	KRT80 (ENSACCG00020016842)	BCDIN3D (ENSACCG00020016846)	FAIM2 (ENSACCG00020016848)	AQP2 (ENSACCG00020016854)	AQP5 (ENSACCG00020016858)	ENSACCG00020016861	ENSACCG00020016949 #20	GALNT6 (ENSACCG00020017006) #21	CELA1 (ENSACCG00020007224) #22	BIN2 (ENSACCG00020007264) #23	SMAGP (ENSACCG00020007282) #24	DAZAP2 (ENSACCG00020007302) #25	ENSACCG00020007309	POU6F1 (ENSACCG00020007329) #26	TFCP2 (ENSACCG00020007355) #27	CSRNP2 (ENSACCG00020007383) #28	LETMD1 (ENSACCG00020007399) #29	SLC11A2 (ENSACCG00020007435) #30	ENSACCG00020007463	TSFM (ENSACCG00020007470)	EEF1AKMT3 (ENSACCG00020007481)	METTL1 (ENSACCG00020007492)	CYP27B1 (ENSACCG00020007564)	LMBR1L (ENSACCG00020007619)
African ostrich	MODERN SPECIES	216	ENSSCUG00000003626	ENSSCUG00000003639	ENSSCUG00000003647	ENSSCUG00000003651	ENSSCUG00000003655	KRT75 (ENSSCUG00000003659)	ENSSCUG00000003663	KRT80 (ENSSCUG00000003665)	BCDIN3D (ENSSCUG00000003667)	FAIM2 (ENSSCUG00000003669)	AQP2 (ENSSCUG00000003671)	AQP5 (ENSSCUG00000003672)	ENSSCUG00000003673	SLC4A8 (ENSSCUG00000003675) #20	GALNT6 (ENSSCUG00000003678) #21	CELA1 (ENSSCUG00000003680) #22	DAZAP2 (ENSSCUG00000003681) #25	ENSSCUG00000003683	POU6F1 (ENSSCUG00000003687) #26	TFCP2 (ENSSCUG00000003689) #27	LETMD1 (ENSSCUG00000003690) #29	SLC11A2 (ENSSCUG00000003692) #30	ENSSCUG00000003695
Cryptodira	ANCESTRAL SPECIES	25	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840
Chinese turtle	DUPLICATION
Chinese turtle	MODERN SPECIES	1054										ENSPSIG00000006479	ENSPSIG00000006196	AQP5 (ENSPSIG00000005837)	ENSPSIG00000000538	SLC4A8 (ENSPSIG00000005210) #20	GALNT6 (ENSPSIG00000004942) #21	ENSPSIG00000004719 #22	BCDIN3D (ENSPSIG00000000532)	ENSPSIG00000004685	ENSPSIG00000000530	ENSPSIG00000003809	ENSPSIG00000003673	KRT75 (ENSPSIG00000003646)	ENSPSIG00000003625	ENSPSIG00000003387	ENSPSIG00000003373
Chinese turtle	MODERN SPECIES	1599																ENSPSIG00000018112 #22	BIN2 (ENSPSIG00000017984) #23	DAZAP2 (ENSPSIG00000017919) #25	POU6F1 (ENSPSIG00000017450) #26	TFCP2 (ENSPSIG00000015527) #27	CSRNP2 (ENSPSIG00000015075) #28	LETMD1 (ENSPSIG00000014480) #29	SLC11A2 (ENSPSIG00000009412) #30	HIGD1C (ENSPSIG00000008459) #31	CTDSP2 (ENSPSIG00000004552)
Testudinoidea	ANCESTRAL SPECIES	21	ENSGT00940000155862.a.b.b	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00390000005372.d	ENSGT00960000187237	ENSGT00940000157422.g #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297.b	ENSGT00390000017840
Testudinidae	ANCESTRAL SPECIES	25	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00960000188776	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00960000187237	ENSGT00940000157422.g #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00950000185411	ENSGT00390000000685 #25	ENSGT00950000185372	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297.b	ENSGT00390000017840
Abingdon island giant tortoise	DUPLICATION
Abingdon island giant tortoise	MODERN SPECIES	1188	ENSCABG00000005800	ENSCABG00000006146	ENSCABG00000006152	ENSCABG00000006440	ENSCABG00000006827	ENSCABG00000006933	KRT80 (ENSCABG00000006958)	BCDIN3D (ENSCABG00000006961)	FAIM2 (ENSCABG00000006970)	AQP2 (ENSCABG00000007094)	AQP5 (ENSCABG00000007095)	ENSCABG00000007121	SLC4A8 (ENSCABG00000007129) #20	GALNT6 (ENSCABG00000007368) #21	ENSCABG00000007371 #22	ENSCABG00000007373 #22	BIN2 (ENSCABG00000007375) #23	ENSCABG00000007379	DAZAP2 (ENSCABG00000007380) #25	ENSCABG00000007383	POU6F1 (ENSCABG00000007384) #26	TFCP2 (ENSCABG00000007386) #27	CSRNP2 (ENSCABG00000007387) #28	ENSCABG00000007388	ENSCABG00000007390	SLC11A2 (ENSCABG00000007391) #30	HIGD1C (ENSCABG00000007395) #31	CTDSP2 (ENSCABG00000007397)	AVIL (ENSCABG00000007402)	TSFM (ENSCABG00000007456)	EEF1AKMT3 (ENSCABG00000007461)
Abingdon island giant tortoise	MODERN SPECIES	1188	ENSCABG00000005791	ENSCABG00000005800	ENSCABG00000006146	ENSCABG00000006152	ENSCABG00000006440	ENSCABG00000006827	ENSCABG00000006933	KRT80 (ENSCABG00000006958)	BCDIN3D (ENSCABG00000006961)	FAIM2 (ENSCABG00000006970)	AQP2 (ENSCABG00000007094)	AQP5 (ENSCABG00000007095)	ENSCABG00000007121	SLC4A8 (ENSCABG00000007129) #20	GALNT6 (ENSCABG00000007368) #21	ENSCABG00000007371 #22	ENSCABG00000007373 #22	BIN2 (ENSCABG00000007375) #23	ENSCABG00000007379	DAZAP2 (ENSCABG00000007380) #25	ENSCABG00000007383	POU6F1 (ENSCABG00000007384) #26	TFCP2 (ENSCABG00000007386) #27	CSRNP2 (ENSCABG00000007387) #28	ENSCABG00000007388	ENSCABG00000007390	SLC11A2 (ENSCABG00000007391) #30	HIGD1C (ENSCABG00000007395) #31	CTDSP2 (ENSCABG00000007397)	AVIL (ENSCABG00000007402)	TSFM (ENSCABG00000007456)
Goode s thornscrub tortoise	MODERN SPECIES	17	ENSGEVG00005014061	ENSGEVG00005014668	ENSGEVG00005014861	ENSGEVG00005014887	ENSGEVG00005014965	ENSGEVG00005015230	ENSGEVG00005015576	KRT80 (ENSGEVG00005015730)	BCDIN3D (ENSGEVG00005015793)	FAIM2 (ENSGEVG00005015813)	AQP2 (ENSGEVG00005015934)	AQP5 (ENSGEVG00005015976)	ENSGEVG00005016012	SLC4A8 (ENSGEVG00005016112) #20	GALNT6 (ENSGEVG00005016671) #21	CELA1 (ENSGEVG00005016706) #22	BIN2 (ENSGEVG00005016865) #23	ENSGEVG00005016923	DAZAP2 (ENSGEVG00005016950) #25	POU6F1 (ENSGEVG00005016963) #26	TFCP2 (ENSGEVG00005016991) #27	CSRNP2 (ENSGEVG00005017020) #28	LETMD1 (ENSGEVG00005017040) #29	SLC11A2 (ENSGEVG00005017070) #30	HIGD1C (ENSGEVG00005017098) #31	CTDSP2 (ENSGEVG00005017153)	AVIL (ENSGEVG00005017229)	TSFM (ENSGEVG00005017507)	EEF1AKMT3 (ENSGEVG00005017521)	METTL1 (ENSGEVG00005017542)	CYP27B1 (ENSGEVG00005017588)
Emydidae	ANCESTRAL SPECIES	34	ENSGT00940000155862.a.a.a.a.b.a.b.a.a	ENSGT00940000155862.a.a.b	ENSGT00940000155862.a.b.b	ENSGT00940000155862.a.b.a.b.b	ENSGT00940000155862.a.b.a.b.a	ENSGT00940000162738.j.b.a	ENSGT00940000162738.i	ENSGT00940000161279	ENSGT00940000153993.B	ENSGT01050000244890.a.b.b	ENSGT00940000160612.d	ENSGT00940000161557.b	ENSGT00390000005372.d	ENSGT00940000157422.g #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00390000010077 #24	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000162804 #31	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297.b	ENSGT00390000017840	ENSGT00950000182905.a.a.b
painted turtle	DUPLICATION
painted turtle	MODERN SPECIES	2396	HTR5A (ENSCPBG00000018225)	INSIG1 (ENSCPBG00000018224)	EN2 (ENSCPBG00000018223)	ENSCPBG00000018222	RBM33 (ENSCPBG00000018221)	SHH (ENSCPBG00000018220)	RNF32 (ENSCPBG00000018218)	LMBR1 (ENSCPBG00000018217)	NOM1 (ENSCPBG00000018215)	MNX1 (ENSCPBG00000018214)	UBE3C (ENSCPBG00000018178)	DNAJB6 (ENSCPBG00000018170)	ENSCPBG00000018166 #20	GALNT6 (ENSCPBG00000018164) #21	ENSCPBG00000018163 #22	ENSCPBG00000018162 #22	BIN2 (ENSCPBG00000018161) #23	SMAGP (ENSCPBG00000018160) #24	DAZAP2 (ENSCPBG00000018159) #25	POU6F1 (ENSCPBG00000018158) #26	TFCP2 (ENSCPBG00000018157) #27	CSRNP2 (ENSCPBG00000018156) #28	LETMD1 (ENSCPBG00000018155) #29	SLC11A2 (ENSCPBG00000018154) #30	HIGD1C (ENSCPBG00000018153) #31	CTDSP2 (ENSCPBG00000018151)	AVIL (ENSCPBG00000018149)	TSFM (ENSCPBG00000018147)	ENSCPBG00000018146	ENSCPBG00000018145	METTL1 (ENSCPBG00000018143)
painted turtle	MODERN SPECIES	2396	ENSCPBG00000018226	HTR5A (ENSCPBG00000018225)	INSIG1 (ENSCPBG00000018224)	EN2 (ENSCPBG00000018223)	ENSCPBG00000018222	RBM33 (ENSCPBG00000018221)	SHH (ENSCPBG00000018220)	RNF32 (ENSCPBG00000018218)	LMBR1 (ENSCPBG00000018217)	NOM1 (ENSCPBG00000018215)	MNX1 (ENSCPBG00000018214)	UBE3C (ENSCPBG00000018178)	DNAJB6 (ENSCPBG00000018170)	ENSCPBG00000018166 #20	GALNT6 (ENSCPBG00000018164) #21	ENSCPBG00000018163 #22	ENSCPBG00000018162 #22	BIN2 (ENSCPBG00000018161) #23	SMAGP (ENSCPBG00000018160) #24	DAZAP2 (ENSCPBG00000018159) #25	POU6F1 (ENSCPBG00000018158) #26	TFCP2 (ENSCPBG00000018157) #27	CSRNP2 (ENSCPBG00000018156) #28	LETMD1 (ENSCPBG00000018155) #29	SLC11A2 (ENSCPBG00000018154) #30	HIGD1C (ENSCPBG00000018153) #31	CTDSP2 (ENSCPBG00000018151)	AVIL (ENSCPBG00000018149)	TSFM (ENSCPBG00000018147)	ENSCPBG00000018146	ENSCPBG00000018145
Three-toed box turtle	MODERN SPECIES	383	ENSTMTG00000010921	ENSTMTG00000011063	ENSTMTG00000011562	ENSTMTG00000011657	ENSTMTG00000012489	ENSTMTG00000013012	ENSTMTG00000013070	KRT80 (ENSTMTG00000013087)	BCDIN3D (ENSTMTG00000013104)	FAIM2 (ENSTMTG00000003393)	AQP2 (ENSTMTG00000003446)	AQP5 (ENSTMTG00000003462)	ENSTMTG00000003502	SLC4A8 (ENSTMTG00000003534) #20	GALNT6 (ENSTMTG00000003584) #21	CELA1 (ENSTMTG00000003627) #22	BIN2 (ENSTMTG00000003686) #23	ENSTMTG00000003711	POU6F1 (ENSTMTG00000003737) #26	TFCP2 (ENSTMTG00000003751) #27	CSRNP2 (ENSTMTG00000003790) #28	LETMD1 (ENSTMTG00000003803) #29	SLC11A2 (ENSTMTG00000003830) #30	HIGD1C (ENSTMTG00000003901) #31	CTDSP2 (ENSTMTG00000003925)	AVIL (ENSTMTG00000003989)	TSFM (ENSTMTG00000004270)	EEF1AKMT3 (ENSTMTG00000004286)	METTL1 (ENSTMTG00000004293)	CYP27B1 (ENSTMTG00000004318)	MARCHF9 (ENSTMTG00000004498)
Anura	ANCESTRAL SPECIES	87	ENSGT00390000014159	ENSGT01030000234669.A	ENSGT01100000263572	ENSGT01100000263494.a.b.a.c.a.a.b	ENSGT00940000155489.b	ENSGT00940000155440.d	ENSGT00940000154409 #36	ENSGT00950000182997.a.b.b.b #35	ENSGT00940000158200 #34	ENSGT00940000165418	ENSGT00940000156263 #19	ENSGT00940000161971 #18	ENSGT00960000187237	ENSGT00940000157422 #20	ENSGT00940000160845 #21	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00950000182882.A.a #23	ENSGT00950000185411	ENSGT00390000000685 #25	ENSGT00940000160106 #26	ENSGT00940000157629 #27	ENSGT00950000183072.b.a #28	ENSGT00950000183167.a.b.b.b #29	ENSGT00940000155330 #30	ENSGT00940000154276.eb	ENSGT01040000240451.a.b.a	ENSGT00940000159587	ENSGT00390000016293	ENSGT00940000161297	ENSGT00390000017840	ENSGT00950000182905.a.a.b
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	DUPLICATION
Leishan spiny toad	MODERN SPECIES	1337																ENSLLEG00000029515 #22
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000003189 #32	ENSLLEG00000003179 #32	ENSLLEG00000003171	SCN8A (ENSLLEG00000003089) #19	ENSLLEG00000003033	ENSLLEG00000003027	ENSLLEG00000003023	FIGNL2 (ENSLLEG00000003006) #18	ENSLLEG00000002989	SLC4A8 (ENSLLEG00000002861) #20	GALNT6 (ENSLLEG00000002814) #21	ENSLLEG00000002647 #22	ENSLLEG00000002549 #22	ENSLLEG00000002505 #22	ENSLLEG00000002452	ENSLLEG00000002436 #22	BIN2 (ENSLLEG00000002408) #23	ENSLLEG00000002386	ENSLLEG00000002368 #25	ENSLLEG00000002349	POU6F1 (ENSLLEG00000002311) #26	ENSLLEG00000002295	ENSLLEG00000002287	TFCP2 (ENSLLEG00000002108) #27	CSRNP2 (ENSLLEG00000002041) #28	LETMD1 (ENSLLEG00000001999) #29	ENSLLEG00000001979	SLC11A2 (ENSLLEG00000001888) #30	ENSLLEG00000001858	ENSLLEG00000001838	CTDSP2 (ENSLLEG00000001800)
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000003205 #32	ENSLLEG00000003200	ENSLLEG00000003189 #32	ENSLLEG00000003179 #32	ENSLLEG00000003171	SCN8A (ENSLLEG00000003089) #19	ENSLLEG00000003033	ENSLLEG00000003027	ENSLLEG00000003023	FIGNL2 (ENSLLEG00000003006) #18	ENSLLEG00000002989	SLC4A8 (ENSLLEG00000002861) #20	GALNT6 (ENSLLEG00000002814) #21	ENSLLEG00000002647 #22	ENSLLEG00000002549 #22	ENSLLEG00000002505 #22	ENSLLEG00000002452	ENSLLEG00000002436 #22	BIN2 (ENSLLEG00000002408) #23	ENSLLEG00000002386	ENSLLEG00000002368 #25	ENSLLEG00000002349	POU6F1 (ENSLLEG00000002311) #26	ENSLLEG00000002295	ENSLLEG00000002287	TFCP2 (ENSLLEG00000002108) #27	CSRNP2 (ENSLLEG00000002041) #28	LETMD1 (ENSLLEG00000001999) #29	ENSLLEG00000001979	SLC11A2 (ENSLLEG00000001888) #30	ENSLLEG00000001858
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000003213 #32	ENSLLEG00000003205 #32	ENSLLEG00000003200	ENSLLEG00000003189 #32	ENSLLEG00000003179 #32	ENSLLEG00000003171	SCN8A (ENSLLEG00000003089) #19	ENSLLEG00000003033	ENSLLEG00000003027	ENSLLEG00000003023	FIGNL2 (ENSLLEG00000003006) #18	ENSLLEG00000002989	SLC4A8 (ENSLLEG00000002861) #20	GALNT6 (ENSLLEG00000002814) #21	ENSLLEG00000002647 #22	ENSLLEG00000002549 #22	ENSLLEG00000002505 #22	ENSLLEG00000002452	ENSLLEG00000002436 #22	BIN2 (ENSLLEG00000002408) #23	ENSLLEG00000002386	ENSLLEG00000002368 #25	ENSLLEG00000002349	POU6F1 (ENSLLEG00000002311) #26	ENSLLEG00000002295	ENSLLEG00000002287	TFCP2 (ENSLLEG00000002108) #27	CSRNP2 (ENSLLEG00000002041) #28	LETMD1 (ENSLLEG00000001999) #29	ENSLLEG00000001979	SLC11A2 (ENSLLEG00000001888) #30
Leishan spiny toad	MODERN SPECIES	5	ENSLLEG00000003222	ENSLLEG00000003213 #32	ENSLLEG00000003205 #32	ENSLLEG00000003200	ENSLLEG00000003189 #32	ENSLLEG00000003179 #32	ENSLLEG00000003171	SCN8A (ENSLLEG00000003089) #19	ENSLLEG00000003033	ENSLLEG00000003027	ENSLLEG00000003023	FIGNL2 (ENSLLEG00000003006) #18	ENSLLEG00000002989	SLC4A8 (ENSLLEG00000002861) #20	GALNT6 (ENSLLEG00000002814) #21	ENSLLEG00000002647 #22	ENSLLEG00000002549 #22	ENSLLEG00000002505 #22	ENSLLEG00000002452	ENSLLEG00000002436 #22	BIN2 (ENSLLEG00000002408) #23	ENSLLEG00000002386	ENSLLEG00000002368 #25	ENSLLEG00000002349	POU6F1 (ENSLLEG00000002311) #26	ENSLLEG00000002295	ENSLLEG00000002287	TFCP2 (ENSLLEG00000002108) #27	CSRNP2 (ENSLLEG00000002041) #28	LETMD1 (ENSLLEG00000001999) #29	ENSLLEG00000001979
Frog	MODERN SPECIES	2	dip2b (ENSXETG00000007284) #35	ENSXETG00000007266	atf1 (ENSXETG00000007299) #34	mettl7a.2 (ENSXETG00000007300)	ENSXETG00000048558	scn8a (ENSXETG00000008958) #19	fignl2 (ENSXETG00000014114) #18	ENSXETG00000038855	ENSXETG00000046043	slc4a8 (ENSXETG00000014124) #20	ENSXETG00000042107	galnt6.2 (ENSXETG00000034564) #21	ENSXETG00000042297	galnt6.3 (ENSXETG00000037416) #21	ENSXETG00000046958	cela1.2 (ENSXETG00000033050) #22	bin2 (ENSXETG00000037908) #23	smagp (ENSXETG00000037829)	pou6f1 (ENSXETG00000014200) #26	tfcp2 (ENSXETG00000009632) #27	csrnp2 (ENSXETG00000009634) #28	letmd1 (ENSXETG00000009635) #29	dazap2 (ENSXETG00000025161) #25	slc11a2 (ENSXETG00000009636) #30	higd1c (ENSXETG00000025166)	ctdsp2 (ENSXETG00000009646)	avil (ENSXETG00000009647)	tsfm (ENSXETG00000009653)	eef1akmt3 (ENSXETG00000009654)	mettl1 (ENSXETG00000009655)	cyp27b1 (ENSXETG00000009657)
Coelacanth	MODERN SPECIES	224	ENSLACG00000018787	NEMP1 (ENSLACG00000022538)	NAB2 (ENSLACG00000018800)	ENSLACG00000018829	ARHGAP9 (ENSLACG00000018841)	MARS1 (ENSLACG00000018854)	DDIT3 (ENSLACG00000018860)	ATF1 (ENSLACG00000018861) #34	ENSLACG00000018868	METTL7A (ENSLACG00000018882) #32	SCN8A (ENSLACG00000018890) #19	FIGNL2 (ENSLACG00000018930) #18	SLC4A8 (ENSLACG00000018933) #20	GALNT6 (ENSLACG00000018944) #21	ENSLACG00000018947	CELA1 (ENSLACG00000018953) #22	BIN2 (ENSLACG00000018956) #23	PMEL (ENSLACG00000018957)	CDK2 (ENSLACG00000018959)	RAB5B (ENSLACG00000018961)	ANKRD52 (ENSLACG00000018963)	COQ10A (ENSLACG00000018966)	CS (ENSLACG00000018967)	TUBA1C (ENSLACG00000018970)	ENSLACG00000018974	ENSLACG00000018978	LMBR1L (ENSLACG00000018980)	DHH (ENSLACG00000018984)	rhebl1 (ENSLACG00000018988)	ENSLACG00000018992	PRKAG1 (ENSLACG00000018997)
Actinopterygii	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a #22
Neopterygii	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a #22
Spotted gar	DUPLICATION
Spotted gar	DUPLICATION
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	655	tdrd3 (ENSLOCG00000004652)	PCDH20 (ENSLOCG00000017781)	ENSLOCG00000017780	PCDH9 (ENSLOCG00000004624)	pou4f1 (ENSLOCG00000004613)	OBI1 (ENSLOCG00000004597)	RBM26 (ENSLOCG00000004557)	ndfip2 (ENSLOCG00000004539)	spry2 (ENSLOCG00000017779)	SLITRK1 (ENSLOCG00000017778)	slitrk6 (ENSLOCG00000017777)	ENSLOCG00000004519	CFAP91 (ENSLOCG00000004498)	nr1i2 (ENSLOCG00000004476)	ENSLOCG00000004420 #22	ENSLOCG00000004386 #22	ENSLOCG00000004373	selenoh (ENSLOCG00000004349)	ENSLOCG00000004330	ENSLOCG00000004314	ENSLOCG00000004293	ENSLOCG00000004258	ENSLOCG00000004243	C21orf62 (ENSLOCG00000017776)	ENSLOCG00000004223	ENSLOCG00000004207	ENSLOCG00000004194	IL10RB (ENSLOCG00000004177)	ENSLOCG00000004158	ENSLOCG00000004142	ENSLOCG00000004132
Spotted gar	MODERN SPECIES	655	syap1 (ENSLOCG00000007380)	SHROOM2 (ENSLOCG00000007347)	CLDN34 (ENSLOCG00000017792)	cldn33b (ENSLOCG00000017791)	wwc3 (ENSLOCG00000007321)	clcn4 (ENSLOCG00000007307)	MID1 (ENSLOCG00000007293)	ARHGAP6 (ENSLOCG00000007265)	ENSLOCG00000007251	ENSLOCG00000007234	mpx (ENSLOCG00000007217)	ENSLOCG00000007186	ENSLOCG00000007157	ENSLOCG00000007121 #22	ENSLOCG00000007088 #22	ENSLOCG00000007075 #22	gsk3bb (ENSLOCG00000007035)	GPR156 (ENSLOCG00000007020)	lrrc58a (ENSLOCG00000007004)	fstl1a (ENSLOCG00000006981)	ENSLOCG00000006967	ENSLOCG00000006953	gja8a (ENSLOCG00000017790)	gja5b (ENSLOCG00000017789)	acp6 (ENSLOCG00000006932)	bcl9 (ENSLOCG00000006913)	ENSLOCG00000006876	chaf1b (ENSLOCG00000006847)	MORC3 (ENSLOCG00000006832)	DOP1B (ENSLOCG00000006795)	cbr1 (ENSLOCG00000006781)
Spotted gar	DUPLICATION
Spotted gar	DUPLICATION
Spotted gar	MODERN SPECIES	655	txlng (ENSLOCG00000007397)	syap1 (ENSLOCG00000007380)	SHROOM2 (ENSLOCG00000007347)	CLDN34 (ENSLOCG00000017792)	cldn33b (ENSLOCG00000017791)	wwc3 (ENSLOCG00000007321)	clcn4 (ENSLOCG00000007307)	MID1 (ENSLOCG00000007293)	ARHGAP6 (ENSLOCG00000007265)	ENSLOCG00000007251	ENSLOCG00000007234	mpx (ENSLOCG00000007217)	ENSLOCG00000007186	ENSLOCG00000007157	ENSLOCG00000007121 #22	ENSLOCG00000007088 #22	ENSLOCG00000007075 #22	gsk3bb (ENSLOCG00000007035)	GPR156 (ENSLOCG00000007020)	lrrc58a (ENSLOCG00000007004)	fstl1a (ENSLOCG00000006981)	ENSLOCG00000006967	ENSLOCG00000006953	gja8a (ENSLOCG00000017790)	gja5b (ENSLOCG00000017789)	acp6 (ENSLOCG00000006932)	bcl9 (ENSLOCG00000006913)	ENSLOCG00000006876	chaf1b (ENSLOCG00000006847)	MORC3 (ENSLOCG00000006832)	DOP1B (ENSLOCG00000006795)
Spotted gar	MODERN SPECIES	655	MORC3 (ENSLOCG00000006832)	chaf1b (ENSLOCG00000006847)	ENSLOCG00000006876	bcl9 (ENSLOCG00000006913)	acp6 (ENSLOCG00000006932)	gja5b (ENSLOCG00000017789)	gja8a (ENSLOCG00000017790)	ENSLOCG00000006953	ENSLOCG00000006967	fstl1a (ENSLOCG00000006981)	lrrc58a (ENSLOCG00000007004)	GPR156 (ENSLOCG00000007020)	gsk3bb (ENSLOCG00000007035)	ENSLOCG00000007075 #22	ENSLOCG00000007088 #22	ENSLOCG00000007121 #22	ENSLOCG00000007157	ENSLOCG00000007186	mpx (ENSLOCG00000007217)	ENSLOCG00000007234	ENSLOCG00000007251	ARHGAP6 (ENSLOCG00000007265)	MID1 (ENSLOCG00000007293)	clcn4 (ENSLOCG00000007307)	wwc3 (ENSLOCG00000007321)	cldn33b (ENSLOCG00000017791)	CLDN34 (ENSLOCG00000017792)	SHROOM2 (ENSLOCG00000007347)	syap1 (ENSLOCG00000007380)	txlng (ENSLOCG00000007397)	rbb4l (ENSLOCG00000007412)
Spotted gar	MODERN SPECIES	655	diaph3 (ENSLOCG00000004676)	tdrd3 (ENSLOCG00000004652)	PCDH20 (ENSLOCG00000017781)	ENSLOCG00000017780	PCDH9 (ENSLOCG00000004624)	pou4f1 (ENSLOCG00000004613)	OBI1 (ENSLOCG00000004597)	RBM26 (ENSLOCG00000004557)	ndfip2 (ENSLOCG00000004539)	spry2 (ENSLOCG00000017779)	SLITRK1 (ENSLOCG00000017778)	slitrk6 (ENSLOCG00000017777)	ENSLOCG00000004519	CFAP91 (ENSLOCG00000004498)	nr1i2 (ENSLOCG00000004476)	ENSLOCG00000004420 #22	ENSLOCG00000004386 #22	ENSLOCG00000004373	selenoh (ENSLOCG00000004349)	ENSLOCG00000004330	ENSLOCG00000004314	ENSLOCG00000004293	ENSLOCG00000004258	ENSLOCG00000004243	C21orf62 (ENSLOCG00000017776)	ENSLOCG00000004223	ENSLOCG00000004207	ENSLOCG00000004194	IL10RB (ENSLOCG00000004177)	ENSLOCG00000004158	ENSLOCG00000004142
Spotted gar	MODERN SPECIES	670	SLC39A5 (ENSLOCG00000004591)	ankrd52a (ENSLOCG00000004608)	COQ10A (ENSLOCG00000004633)	cs (ENSLOCG00000004655)	cnpy2 (ENSLOCG00000004671)	ENSLOCG00000004688	racgap1 (ENSLOCG00000004720)	ENSLOCG00000004747	bin2a (ENSLOCG00000004768) #23	ENSLOCG00000018196	dazap2 (ENSLOCG00000004791) #25	pou6f1 (ENSLOCG00000004801) #26	TFCP2 (ENSLOCG00000004816) #27	CSRNP2 (ENSLOCG00000004834) #28	itga5 (ENSLOCG00000004844)	CELA1 (ENSLOCG00000004871) #22	spryd4 (ENSLOCG00000004897)	gls2b (ENSLOCG00000004907)	rdh5 (ENSLOCG00000004925)	bloc1s1 (ENSLOCG00000004941)	ITGA7 (ENSLOCG00000004959)	npffl (ENSLOCG00000004987)	PPP1R1A (ENSLOCG00000005001)	PDE1B (ENSLOCG00000005028)	nckap1l (ENSLOCG00000005047)	ENSLOCG00000005096	col2a1b (ENSLOCG00000005115)	tmem106c (ENSLOCG00000005136)	ENSLOCG00000005157	ENSLOCG00000005174	vdrb (ENSLOCG00000005194)
Osteoglossocephalai	ANCESTRAL SPECIES	1	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000166028	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT00390000002190	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000155224.c.a	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00990000209831	ENSGT01060000252161
Clupeocephala	DUPLICATION
Clupeocephala	DUPLICATION
Clupeocephala	ANCESTRAL SPECIES	7	ENSGT00940000153393.B	ENSGT00940000155615.i.a	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT00390000002190	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00990000209831
Otomorpha	ANCESTRAL SPECIES	29	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.a.c	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689
Otophysi	ANCESTRAL SPECIES	2	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000166028	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.a.c	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT01030000234528.B.b.a.a.a.d #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.a.c	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860
Characoidei	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.c.a #22
Mexicana tetra	MODERN SPECIES	1212														CELA1 (ENSAMXG00000014110) #22	ENSAMXG00000035756	ENSAMXG00000040394 #22	gls2b (ENSAMXG00000004802)	rdh5 (ENSAMXG00000038946)	bloc1s1 (ENSAMXG00000039913)	tbc1d20 (ENSAMXG00000041540)	rbck1 (ENSAMXG00000004941)	ENSAMXG00000037599	rpp14 (ENSAMXG00000042078)	HTD2 (ENSAMXG00000025978)	pxk (ENSAMXG00000004944)	pdhb (ENSAMXG00000004949)	kctd6a (ENSAMXG00000033161)	ccdc71 (ENSAMXG00000025979)	stab1 (ENSAMXG00000004966)	NISCH (ENSAMXG00000005024)	ENSAMXG00000005064
Euteleosteomorpha	ANCESTRAL SPECIES	5	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT00940000160885	ENSGT00940000167008
Acanthomorphata	ANCESTRAL SPECIES	26	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01090000260250	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Cod	MODERN SPECIES	4	EOGT (ENSGMOG00000014301)	ENSGMOG00000030700	ENSGMOG00000036171	ENSGMOG00000030108	APCDD1L (ENSGMOG00000016908)	vapb (ENSGMOG00000026642)	ENSGMOG00000029988	rab22a (ENSGMOG00000013070)	ENSGMOG00000013081	ENSGMOG00000013101	ENSGMOG00000027548	cers5 (ENSGMOG00000013107)	gpd1b (ENSGMOG00000013130)	smarcd1 (ENSGMOG00000013135)	ENSGMOG00000013148	cela1.3 (ENSGMOG00000013172) #22	gls2b (ENSGMOG00000013188)	ENSGMOG00000013208	bloc1s1 (ENSGMOG00000013215)	ENSGMOG00000013219	ENSGMOG00000013252	ENSGMOG00000013259	eya2 (ENSGMOG00000013279)	rtf2 (ENSGMOG00000013299)	ENSGMOG00000013312	tfap2c (ENSGMOG00000013321)	ENSGMOG00000026965	ENSGMOG00000015951	ENSGMOG00000000630	ENSGMOG00000000715	ENSGMOG00000000738
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01090000260250	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Pinecone sodierfish	MODERN SPECIES	19	ENSMMDG00005022238	manbal (ENSMMDG00005022232)	SRC (ENSMMDG00005022229)	APCDD1L (ENSMMDG00005022227)	ENSMMDG00005022225	vapb (ENSMMDG00005022224)	rab22a (ENSMMDG00005022213)	ENSMMDG00005021071	BCDIN3D (ENSMMDG00005021043)	COX14 (ENSMMDG00005021042)	cers5 (ENSMMDG00005021040)	gpd1b (ENSMMDG00005021038)	smarcd1 (ENSMMDG00005019577)	ENSMMDG00005019524	CELA1 (ENSMMDG00005019520) #22	ENSMMDG00005019464 #22	gls2b (ENSMMDG00005018696)	rdh5 (ENSMMDG00005018423)	bloc1s1 (ENSMMDG00005018410)	itcha (ENSMMDG00005013833)	pxmp4 (ENSMMDG00005013778)	tgm5l (ENSMMDG00005013776)	eya2 (ENSMMDG00005013773)	GCNT7 (ENSMMDG00005013771)	rtf2 (ENSMMDG00005013770)	tfap2c (ENSMMDG00005013769)	CDH22 (ENSMMDG00005013765)	ZNFX1 (ENSMMDG00005012991)	tbc1d20 (ENSMMDG00005012970)	rbck1 (ENSMMDG00005012968)	ENSMMDG00005012964
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Tiger tail seahorse	MODERN SPECIES	48														ENSHCOG00000019174	CELA1 (ENSHCOG00000019200) #22	ENSHCOG00000019212 #22	ENSHCOG00000019232	rdh5 (ENSHCOG00000019277)	bloc1s1 (ENSHCOG00000019301)	itcha (ENSHCOG00000019377)	pxmp4 (ENSHCOG00000019383)	tgm5l (ENSHCOG00000019506)	eya2 (ENSHCOG00000019546)	cdc42 (ENSHCOG00000019573)	snrpe (ENSHCOG00000019590)	sox13 (ENSHCOG00000019609)	etnk2 (ENSHCOG00000019626)	ENSHCOG00000019650	slc41a1 (ENSHCOG00000019679)	ENSHCOG00000019726	cacna1sa (ENSHCOG00000020209)
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a.g.b	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Burton s mouthbrooder	MODERN SPECIES	640	ENSHBUG00000003566	manbal (ENSHBUG00000003540)	SRC (ENSHBUG00000003523)	APCDD1L (ENSHBUG00000003483)	vapb (ENSHBUG00000003466)	ENSHBUG00000003453	rab22a (ENSHBUG00000003434)	ENSHBUG00000003424	BCDIN3D (ENSHBUG00000003414)	cers5 (ENSHBUG00000003401)	COX14 (ENSHBUG00000003352)	gpd1b (ENSHBUG00000003340)	smarcd1 (ENSHBUG00000003305)	ENSHBUG00000003248	ENSHBUG00000003213 #22	ENSHBUG00000003188 #22	gls2b (ENSHBUG00000003167)	rdh5 (ENSHBUG00000003111)	bloc1s1 (ENSHBUG00000003105)
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a.g.b	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a.g.b	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	1108	ENSMZEG00005003991	manbal (ENSMZEG00005004018)	SRC (ENSMZEG00005004034)	APCDD1L (ENSMZEG00005004075)	vapb (ENSMZEG00005004084)	ENSMZEG00005004112	rab22a (ENSMZEG00005004122)	ENSMZEG00005004145	BCDIN3D (ENSMZEG00005004155)	cers5 (ENSMZEG00005004167)	COX14 (ENSMZEG00005004196)	gpd1b (ENSMZEG00005004204)	smarcd1 (ENSMZEG00005004231)	ENSMZEG00005004276	ENSMZEG00005004335 #22	ENSMZEG00005004366 #22	gls2b (ENSMZEG00005004392)	rdh5 (ENSMZEG00005004459)	bloc1s1 (ENSMZEG00005004851)	itcha (ENSMZEG00005004876)	pxmp4 (ENSMZEG00005004941)	tgm5l (ENSMZEG00005004957)	ENSMZEG00005004976	tgm5l (ENSMZEG00005005020)	eya2 (ENSMZEG00005005047)	rtf2 (ENSMZEG00005005069)	GCNT7 (ENSMZEG00005005090)	tfap2c (ENSMZEG00005005108)	ENSMZEG00005005156	ENSMZEG00005005168	ENSMZEG00005005181
Zebra mbuna	MODERN SPECIES	613															ENSMZEG00005026233 #22	CELA1 (ENSMZEG00005026235) #22	gls2b (ENSMZEG00005026238)	rdh5 (ENSMZEG00005003414)	bloc1s1 (ENSMZEG00005003438)	itcha (ENSMZEG00005003486)
Eastern happy	MODERN SPECIES	17	ENSACLG00000021643	manbal (ENSACLG00000021617)	SRC (ENSACLG00000021545)	APCDD1L (ENSACLG00000021541)	ENSACLG00000021530	vapb (ENSACLG00000021519)	rab22a (ENSACLG00000021470)	ENSACLG00000021377	BCDIN3D (ENSACLG00000021365)	COX14 (ENSACLG00000021353)	cers5 (ENSACLG00000021313)	gpd1b (ENSACLG00000021241)	smarcd1 (ENSACLG00000021145)	ENSACLG00000021069	ENSACLG00000020985 #22	ENSACLG00000020955 #22	gls2b (ENSACLG00000020848)	rdh5 (ENSACLG00000020839)	bloc1s1 (ENSACLG00000020823)	itcha (ENSACLG00000020726)	tgm5l (ENSACLG00000020666)	eya2 (ENSACLG00000020618)	GCNT7 (ENSACLG00000020592)	rtf2 (ENSACLG00000020561)	tfap2c (ENSACLG00000020525)	CDH22 (ENSACLG00000020470)	ZNFX1 (ENSACLG00000020441)	tbc1d20 (ENSACLG00000020409)	rbck1 (ENSACLG00000020380)	NECAB3 (ENSACLG00000020364)	cbfa2t2 (ENSACLG00000020283)
P. nyererei	MODERN SPECIES	329	SRC (ENSPNYG00000006607)	APCDD1L (ENSPNYG00000006624)	vapb (ENSPNYG00000006635)	ENSPNYG00000006653	rab22a (ENSPNYG00000006672)	ENSPNYG00000006706	BCDIN3D (ENSPNYG00000006788)	COX14 (ENSPNYG00000006800)	cers5 (ENSPNYG00000006808)	gpd1b (ENSPNYG00000006834)	smarcd1 (ENSPNYG00000006863)	ENSPNYG00000006903	asic1b (ENSPNYG00000006933)	ENSPNYG00000006942	ENSPNYG00000006953 #22	ENSPNYG00000006973 #22	gls2b (ENSPNYG00000006994)	rdh5 (ENSPNYG00000007057)	bloc1s1 (ENSPNYG00000007092)	itcha (ENSPNYG00000007113)	pxmp4 (ENSPNYG00000007129)
Lyretail cichlid	MODERN SPECIES	294	manbal (ENSNBRG00000007226)	SRC (ENSNBRG00000007194)	ENSNBRG00000007179	vapb (ENSNBRG00000007158)	rab22a (ENSNBRG00000007131)	ENSNBRG00000007113	BCDIN3D (ENSNBRG00000007102)	COX14 (ENSNBRG00000007094)	cers5 (ENSNBRG00000007064)	gpd1b (ENSNBRG00000007029)	smarcd1 (ENSNBRG00000006998)	asic1b (ENSNBRG00000006979)	ENSNBRG00000006949	ENSNBRG00000006936	ENSNBRG00000006924 #22	CELA1 (ENSNBRG00000006912) #22	gls2b (ENSNBRG00000006743)	rdh5 (ENSNBRG00000006686)	bloc1s1 (ENSNBRG00000006675)	itcha (ENSNBRG00000006618)	pxmp4 (ENSNBRG00000006589)	eya2 (ENSNBRG00000006489)	GCNT7 (ENSNBRG00000006446)	rtf2 (ENSNBRG00000006431)	tfap2c (ENSNBRG00000006405)	CDH22 (ENSNBRG00000006308)	ZNFX1 (ENSNBRG00000006236)	rbck1 (ENSNBRG00000006179)	ENSNBRG00000006132	cbfa2t2 (ENSNBRG00000006093)	SNTA1 (ENSNBRG00000006037)
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Pomacentridae_A	ANCESTRAL SPECIES	38	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.n #22	ENSGT01030000234528.B.b.a.a.a.c.b.m #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Amphiprion	ANCESTRAL SPECIES	49	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000164727	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.n #22	ENSGT01030000234528.B.b.a.a.a.c.b.m #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376
Orange clownfish	MODERN SPECIES	20	APCDD1L (ENSAPEG00000011272)	ENSAPEG00000011256	vapb (ENSAPEG00000011238)	rab22a (ENSAPEG00000011209)	ENSAPEG00000011194	BCDIN3D (ENSAPEG00000011187)	COX14 (ENSAPEG00000011178)	cers5 (ENSAPEG00000011115)	gpd1b (ENSAPEG00000011103)	smarcd1 (ENSAPEG00000011033)	asic1b (ENSAPEG00000011011)	ENSAPEG00000010964	ENSAPEG00000010940	ENSAPEG00000010926 #22	ENSAPEG00000010903 #22	ENSAPEG00000010893 #22	gls2b (ENSAPEG00000010645)	rdh5 (ENSAPEG00000010620)	bloc1s1 (ENSAPEG00000010599)	itcha (ENSAPEG00000010493)	pxmp4 (ENSAPEG00000010464)	tgm5l (ENSAPEG00000010380)	eya2 (ENSAPEG00000010221)	GCNT7 (ENSAPEG00000010208)	rtf2 (ENSAPEG00000010180)	tfap2c (ENSAPEG00000010147)	CDH22 (ENSAPEG00000010097)	apoda.1 (ENSAPEG00000010066)	st7l (ENSAPEG00000009999)	wnt2ba (ENSAPEG00000009963)	CTTNBP2NL (ENSAPEG00000009900)
Clown anemonefish	MODERN SPECIES	1542									COX14 (ENSAOCG00000000163)	cers5 (ENSAOCG00000004513)	gpd1b (ENSAOCG00000004532)	smarcd1 (ENSAOCG00000004566)	ENSAOCG00000004608	ENSAOCG00000004625 #22	ENSAOCG00000004638 #22	CELA1 (ENSAOCG00000004649) #22	gls2b (ENSAOCG00000000176)	rdh5 (ENSAOCG00000000179)	bloc1s1 (ENSAOCG00000004733)	itcha (ENSAOCG00000004786)	pxmp4 (ENSAOCG00000004804)	tgm5l (ENSAOCG00000004823)	eya2 (ENSAOCG00000004836)	GCNT7 (ENSAOCG00000004849)	rtf2 (ENSAOCG00000004859)	tfap2c (ENSAOCG00000000187)
Spiny chromis	MODERN SPECIES	1197															ENSAPOG00000011217 #22	CELA1 (ENSAPOG00000011149) #22	gls2b (ENSAPOG00000011132)	ENSAPOG00000011106	rdh5 (ENSAPOG00000011082)	bloc1s1 (ENSAPOG00000011068)	itcha (ENSAPOG00000011026)	pxmp4 (ENSAPOG00000011009)	tgm5l (ENSAPOG00000011004)	eya2 (ENSAPOG00000010951)	ENSAPOG00000010930
Bicolor damselfish	MODERN SPECIES	387			APCDD1L (ENSSPAG00000021269)	vapb (ENSSPAG00000021280)	ENSSPAG00000021322	rab22a (ENSSPAG00000021333)	ENSSPAG00000021358	BCDIN3D (ENSSPAG00000021374)	cers5 (ENSSPAG00000021381)	COX14 (ENSSPAG00000021418)	gpd1b (ENSSPAG00000021426)	smarcd1 (ENSSPAG00000021444)	ENSSPAG00000021468	asic1b (ENSSPAG00000021496)	ENSSPAG00000021521 #22	ENSSPAG00000021532 #22	gls2b (ENSSPAG00000021545)	rdh5 (ENSSPAG00000021564)	bloc1s1 (ENSSPAG00000021570)	itcha (ENSSPAG00000021574)	pxmp4 (ENSSPAG00000021603)	tgm5l (ENSSPAG00000021620)	eya2 (ENSSPAG00000000023)	rtf2 (ENSSPAG00000000048)	GCNT7 (ENSSPAG00000000067)	tfap2c (ENSSPAG00000000077)
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Oryzias	ANCESTRAL SPECIES	1	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c	ENSGT00940000157549.a
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c	ENSGT00940000157549.a	ENSGT00490000043415.k.b
Indian medaka	MODERN SPECIES	8	manbal (ENSOMEG00000013578)	SRC (ENSOMEG00000013533)	APCDD1L (ENSOMEG00000013483)	vapb (ENSOMEG00000013470)	ENSOMEG00000000903	rab22a (ENSOMEG00000013425)	ENSOMEG00000013394	BCDIN3D (ENSOMEG00000013355)	COX14 (ENSOMEG00000013342)	cers5 (ENSOMEG00000013324)	gpd1b (ENSOMEG00000013286)	smarcd1 (ENSOMEG00000013234)	ENSOMEG00000013169	CELA1 (ENSOMEG00000013115) #22	ENSOMEG00000013096 #22	ENSOMEG00000013070 #22	tnni1b (ENSOMEG00000013028)	csrp1b (ENSOMEG00000013015)	NAV1 (ENSOMEG00000012980)	mybphb (ENSOMEG00000012906)	SYT2 (ENSOMEG00000012840)	ENSOMEG00000012734	ENSOMEG00000012697	ENSOMEG00000012547	ENSOMEG00000012442	GRM4 (ENSOMEG00000012281)	nudt3b (ENSOMEG00000012248)	rps10 (ENSOMEG00000012208)	pacsin1b (ENSOMEG00000012156)	SPDEF (ENSOMEG00000012084)	ilrun (ENSOMEG00000012054)
Javanese ricefish	MODERN SPECIES	19	ENSOJAG00000011260	manbal (ENSOJAG00000011242)	SRC (ENSOJAG00000008989)	APCDD1L (ENSOJAG00000008729)	ENSOJAG00000008706	vapb (ENSOJAG00000008675)	rab22a (ENSOJAG00000008568)	ENSOJAG00000007735	BCDIN3D (ENSOJAG00000007676)	COX14 (ENSOJAG00000007667)	cers5 (ENSOJAG00000007621)	gpd1b (ENSOJAG00000007381)	smarcd1 (ENSOJAG00000005889)	ENSOJAG00000005398	ENSOJAG00000005330 #22	CELA1 (ENSOJAG00000005294) #22	tnni1b (ENSOJAG00000005222)	csrp1b (ENSOJAG00000005158)	NAV1 (ENSOJAG00000004821)	mybphb (ENSOJAG00000004676)	SYT2 (ENSOJAG00000004638)	ENSOJAG00000004626	ENSOJAG00000004389	ENSOJAG00000004319	igfn1.1 (ENSOJAG00000004216)	GRM4 (ENSOJAG00000003923)	nudt3b (ENSOJAG00000003847)	rps10 (ENSOJAG00000003802)	pacsin1b (ENSOJAG00000017834)	SPDEF (ENSOJAG00000017819)	ilrun (ENSOJAG00000017795)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c	ENSGT00940000157549.a
Chinese medaka	MODERN SPECIES	957	ENSOSIG00000018896	cyp24a1 (ENSOSIG00000018905)	ENSOSIG00000018925	manbal (ENSOSIG00000018926)	SRC (ENSOSIG00000000970)	APCDD1L (ENSOSIG00000010063)	vapb (ENSOSIG00000010064)	rab22a (ENSOSIG00000010066)	ENSOSIG00000010069	BCDIN3D (ENSOSIG00000010270)	COX14 (ENSOSIG00000010273)	cers5 (ENSOSIG00000010281)	gpd1b (ENSOSIG00000010286)	smarcd1 (ENSOSIG00000010315)	ENSOSIG00000013798	CELA1 (ENSOSIG00000013817) #22	tnni1b (ENSOSIG00000013825)	csrp1b (ENSOSIG00000013830)	NAV1 (ENSOSIG00000013856)	ENSOSIG00000014542	mybphb (ENSOSIG00000014545)	SYT2 (ENSOSIG00000014558)	ENSOSIG00000014562	ENSOSIG00000014568	ENSOSIG00000014573	igfn1.1 (ENSOSIG00000014578)	GRM4 (ENSOSIG00000014580)	nudt3b (ENSOSIG00000014582)	rps10 (ENSOSIG00000014584)	pacsin1b (ENSOSIG00000014592)	SPDEF (ENSOSIG00000014606)
Japanese Medaka HdrR	MODERN SPECIES	19	SRC (ENSORLG00000006714)	APCDD1L (ENSORLG00000006724)	vapb (ENSORLG00000006745)	ENSORLG00000025533	ENSORLG00000023158	rab22a (ENSORLG00000026049)	ENSORLG00000006805	BCDIN3D (ENSORLG00000022941)	cers5 (ENSORLG00000006833)	COX14 (ENSORLG00000022328)	gpd1b (ENSORLG00000006847)	smarcd1 (ENSORLG00000006870)	ENSORLG00000006894	ENSORLG00000025997 #22	ENSORLG00000006922 #22	CELA1 (ENSORLG00000006967) #22	tnni1b (ENSORLG00000006990)	csrp1b (ENSORLG00000007008)	ENSORLG00000026873	NAV1 (ENSORLG00000007109)	mybphb (ENSORLG00000007135)	ENSORLG00000007159	ENSORLG00000022198	ENSORLG00000028532	ENSORLG00000007183	ENSORLG00000023973	ENSORLG00000007238	nudt3b (ENSORLG00000025270)	rps10 (ENSORLG00000007257)	pacsin1b (ENSORLG00000007282)	SPDEF (ENSORLG00000029267)
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.t.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d.x.b	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Aplocheiloidei	ANCESTRAL SPECIES	10	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d.x.b	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Mangrove rivulus	MODERN SPECIES	11	SRC (ENSKMAG00000014774)	APCDD1L (ENSKMAG00000014756)	ENSKMAG00000014747	vapb (ENSKMAG00000014728)	rab22a (ENSKMAG00000014705)	ENSKMAG00000014667	BCDIN3D (ENSKMAG00000014656)	COX14 (ENSKMAG00000014652)	ENSKMAG00000014641	cers5 (ENSKMAG00000014613)	gpd1b (ENSKMAG00000014583)	smarcd1 (ENSKMAG00000014527)	ENSKMAG00000014476	ENSKMAG00000014435 #22	ENSKMAG00000014411 #22	CELA1 (ENSKMAG00000014398) #22	gls2b (ENSKMAG00000014362)	bloc1s1 (ENSKMAG00000014318)	itcha (ENSKMAG00000014234)	pxmp4 (ENSKMAG00000014204)	tgm5l (ENSKMAG00000014174)	eya2 (ENSKMAG00000014120)	GCNT7 (ENSKMAG00000014094)	rtf2 (ENSKMAG00000014071)	tfap2c (ENSKMAG00000014011)	ENSKMAG00000013976	CDH22 (ENSKMAG00000013931)	ZNFX1 (ENSKMAG00000013898)	tbc1d20 (ENSKMAG00000013864)	rbck1 (ENSKMAG00000013826)	NECAB3 (ENSKMAG00000013778)
Turquoise killifish	MODERN SPECIES	1619	SRC (ENSNFUG00015015352)	BX323459.1 (ENSNFUG00015015029)	VAPB (ENSNFUG00015014990)	RAB22A (ENSNFUG00015014978)	ENSNFUG00015013788	BCDIN3D (ENSNFUG00015013721)	COX14 (ENSNFUG00015013719)	cers5 (ENSNFUG00015013638)	gpd1b (ENSNFUG00015013578)	ENSNFUG00015013569	SMARCD1 (ENSNFUG00015011883)	ENSNFUG00015011752	ENSNFUG00015011154	ENSNFUG00015011053	ENSNFUG00015011034 #22	CELA1 (ENSNFUG00015011022) #22	gls2b (ENSNFUG00015010000)	rdh5 (ENSNFUG00015009940)	BLOC1S1 (ENSNFUG00015009921)	ITCH (ENSNFUG00015005831)	pxmp4 (ENSNFUG00015005510)	tgm5l (ENSNFUG00015005493)	eya2 (ENSNFUG00015005070)	ENSNFUG00015004996	ENSNFUG00015004990	GCNT7 (ENSNFUG00015004943)	RTFDC1 (ENSNFUG00015004915)	tfap2c (ENSNFUG00015004896)	ENSNFUG00015004888	CABZ01034923.1 (ENSNFUG00015004738)	ZNFX1 (ENSNFUG00015023246)
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000161337.a.a.b.a.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.b.i	ENSGT00940000161337.a.a.b.a.a.b.j	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.t.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Poeciliinae	ANCESTRAL SPECIES	4	ENSGT00940000161337.a.a.b.a.a.a.a.b.a.a	ENSGT00940000161337.a.a.b.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.b.i	ENSGT00940000161337.a.a.b.a.a.b.j	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a.e	ENSGT00940000153866.A.k.a.f	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Platyfish	MODERN SPECIES	12	ENSXMAG00000027116	ENSXMAG00000024521	ENSXMAG00000028737	ENSXMAG00000023077	ENSXMAG00000020916	ENSXMAG00000019345	KCNS1 (ENSXMAG00000019347)	ENSXMAG00000019348	cox6c (ENSXMAG00000019350)	ENSXMAG00000019351	ENSXMAG00000024552	cand2 (ENSXMAG00000019353)	sec13 (ENSXMAG00000019356)	dnase1l4.2 (ENSXMAG00000019357)	ENSXMAG00000019358	CELA1 (ENSXMAG00000028536) #22	gls2b (ENSXMAG00000019361)	itcha (ENSXMAG00000019367)	pxmp4 (ENSXMAG00000019371)	tgm5l (ENSXMAG00000019372)	eya2 (ENSXMAG00000019373)	ENSXMAG00000026110	rtf2 (ENSXMAG00000029796)	GCNT7 (ENSXMAG00000026994)	tfap2c (ENSXMAG00000005803)	CDH22 (ENSXMAG00000005816)	ZNFX1 (ENSXMAG00000005859)	tbc1d20 (ENSXMAG00000005880)	rbck1 (ENSXMAG00000005890)	NECAB3 (ENSXMAG00000005908)	cbfa2t2 (ENSXMAG00000013414)
Poecilia	ANCESTRAL SPECIES	25	ENSGT00940000161337.a.a.b.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.b.i	ENSGT00940000161337.a.a.b.a.a.b.j	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000160096	ENSGT00940000159787	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a.e	ENSGT00940000153866.A.k.a.f	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376
NAME_6	ANCESTRAL SPECIES	164	ENSGT00940000161337.a.a.b.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.b.i	ENSGT00940000161337.a.a.b.a.a.b.j	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000160096	ENSGT00940000159787	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a.e	ENSGT00940000153866.A.k.a.f	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376
Sailfin molly	MODERN SPECIES	493												cand2 (ENSPLAG00000014948)	sec13 (ENSPLAG00000014980)	dnase1l4.2 (ENSPLAG00000015019)	enkur (ENSPLAG00000015042)	CELA1 (ENSPLAG00000015052) #22	gls2b (ENSPLAG00000015425)	rdh5 (ENSPLAG00000015497)	bloc1s1 (ENSPLAG00000015507)	itcha (ENSPLAG00000015519)	pxmp4 (ENSPLAG00000015544)	tgm5l (ENSPLAG00000015652)	eya2 (ENSPLAG00000015722)	GCNT7 (ENSPLAG00000015738)	rtf2 (ENSPLAG00000015760)	tfap2c (ENSPLAG00000015785)
Amazon molly	MODERN SPECIES	493	matn4 (ENSPFOG00000016807)	ENSPFOG00000016779	ENSPFOG00000022135	ENSPFOG00000016775	or90a1 (ENSPFOG00000016771)	ENSPFOG00000016764	KCNS1 (ENSPFOG00000016725)	ENSPFOG00000016705	ENSPFOG00000016669	cox6c (ENSPFOG00000016666)	ENSPFOG00000016607	ENSPFOG00000022805	cand2 (ENSPFOG00000016530)	sec13 (ENSPFOG00000016507)	dnase1l4.2 (ENSPFOG00000016482)	CELA1 (ENSPFOG00000016471) #22	gls2b (ENSPFOG00000016406)	rdh5 (ENSPFOG00000016396)	bloc1s1 (ENSPFOG00000016394)	itcha (ENSPFOG00000016342)	pxmp4 (ENSPFOG00000016339)	tgm5l (ENSPFOG00000016291)	eya2 (ENSPFOG00000016188)	rtf2 (ENSPFOG00000016110)	GCNT7 (ENSPFOG00000016161)	tfap2c (ENSPFOG00000016070)	CDH22 (ENSPFOG00000016027)
Guppy	MODERN SPECIES	457	ENSPREG00000015214	ENSPREG00000015224	ENSPREG00000015240	ENSPREG00000015266	ENSPREG00000015283	ENSPREG00000015309	or90a1 (ENSPREG00000015350)	ENSPREG00000015414	sec13 (ENSPREG00000015541)	ENSPREG00000015583	ENSPREG00000015617	ENSPREG00000015630	cand2 (ENSPREG00000015664)	dnase1l4.2 (ENSPREG00000015763)	ENSPREG00000015802	ENSPREG00000015836 #22	gls2b (ENSPREG00000015852)	rdh5 (ENSPREG00000015896)	bloc1s1 (ENSPREG00000015906)	itcha (ENSPREG00000015924)	pxmp4 (ENSPREG00000015951)	tgm5l (ENSPREG00000015982)	pxmp4 (ENSPREG00000016021)	tgm5l (ENSPREG00000016059)	eya2 (ENSPREG00000016135)	rtf2 (ENSPREG00000016166)	GCNT7 (ENSPREG00000016184)	tfap2c (ENSPREG00000016210)	CDH22 (ENSPREG00000016269)	cdh4 (ENSPREG00000016351)	ENSPREG00000016418
NAME_4	ANCESTRAL SPECIES	193	ENSGT00940000161337.a.a.b.a.a.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.a.a.a.a	ENSGT00940000161337.a.a.b.a.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.b.i	ENSGT00940000161337.a.a.a.a	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.t.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b
Sheepshead minnow	MODERN SPECIES	1539															ENSCVAG00000017709 #22	CELA1 (ENSCVAG00000017716) #22	gls2b (ENSCVAG00000017770)	rdh5 (ENSCVAG00000017796)	bloc1s1 (ENSCVAG00000017816)	itcha (ENSCVAG00000017836)	pxmp4 (ENSCVAG00000017857)	tgm5l (ENSCVAG00000018042)	eya2 (ENSCVAG00000018151)
Mummichog	DUPLICATION
Mummichog	MODERN SPECIES	345										ENSFHEG00000016192	cand2 (ENSFHEG00000016177)	sec13 (ENSFHEG00000016019)	ENSFHEG00000015987	dnase1l4.2 (ENSFHEG00000015902)	ENSFHEG00000015888 #22	CELA1 (ENSFHEG00000015859) #22	gls2b (ENSFHEG00000015848)	rdh5 (ENSFHEG00000015812)	bloc1s1 (ENSFHEG00000015756)	itcha (ENSFHEG00000015750)	pxmp4 (ENSFHEG00000015705)	tgm5l (ENSFHEG00000015688)	eya2 (ENSFHEG00000015629)	rtf2 (ENSFHEG00000015617)	GCNT7 (ENSFHEG00000015580)	tfap2c (ENSFHEG00000015575)	bves (ENSFHEG00000015556)
Mummichog	MODERN SPECIES	194																ENSFHEG00000015435 #22
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Anabantaria	ANCESTRAL SPECIES		ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Siamese fighting fish	MODERN SPECIES	16	manbal (ENSBSLG00000010115)	SRC (ENSBSLG00000009053)	APCDD1L (ENSBSLG00000008903)	ENSBSLG00000008865	vapb (ENSBSLG00000008858)	rab22a (ENSBSLG00000008852)	ENSBSLG00000008379	BCDIN3D (ENSBSLG00000008308)	COX14 (ENSBSLG00000008292)	cers5 (ENSBSLG00000025925)	gpd1b (ENSBSLG00000025924)	smarcd1 (ENSBSLG00000025923)	ENSBSLG00000025922	ENSBSLG00000025921 #22	ENSBSLG00000025920 #22	CELA1 (ENSBSLG00000025919) #22	rdh5 (ENSBSLG00000025918)	bloc1s1 (ENSBSLG00000025917)	itcha (ENSBSLG00000025915)	pxmp4 (ENSBSLG00000025907)	tgm5l (ENSBSLG00000025906)	eya2 (ENSBSLG00000025903)	GCNT7 (ENSBSLG00000025902)	rtf2 (ENSBSLG00000025901)	tfap2c (ENSBSLG00000025900)	ENSBSLG00000025899	CDH22 (ENSBSLG00000025897)	ZNFX1 (ENSBSLG00000025896)	tbc1d20 (ENSBSLG00000025895)	rbck1 (ENSBSLG00000025893)	NECAB3 (ENSBSLG00000025892)
Climbing perch	MODERN SPECIES	18	ENSATEG00000025084	ENSATEG00000025083	APCDD1L (ENSATEG00000026034)	ENSATEG00000025081	vapb (ENSATEG00000028403)	rab22a (ENSATEG00000025926)	ENSATEG00000025078	ENSATEG00000025441	ENSATEG00000025076	ENSATEG00000025075	gpd1b (ENSATEG00000025074)	ENSATEG00000025073	ENSATEG00000025071	ENSATEG00000025069 #22	ENSATEG00000025068 #22	ENSATEG00000025067 #22	gls2b (ENSATEG00000025066)	ENSATEG00000025065	bloc1s1 (ENSATEG00000029358)	ENSATEG00000025063	ENSATEG00000025062	ENSATEG00000025061	ENSATEG00000025060	GCNT7 (ENSATEG00000025059)	rtf2 (ENSATEG00000025058)	tfap2c (ENSATEG00000025057)	ENSATEG00000025056	ENSATEG00000025055	ENSATEG00000025054	ENSATEG00000026465	NECAB3 (ENSATEG00000030193)
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000005682	APCDD1L (ENSMAMG00000028091)	vapb (ENSMAMG00000027105)	ENSMAMG00000006008	rab22a (ENSMAMG00000006024)	ENSMAMG00000006073	ENSMAMG00000006102	ENSMAMG00000006138	gpd1b (ENSMAMG00000006180)	ENSMAMG00000007907	ENSMAMG00000007965	ENSMAMG00000008019 #22	ENSMAMG00000008036 #22	ENSMAMG00000027645 #22	ENSMAMG00000008059 #22	ENSMAMG00000024553 #22	ENSMAMG00000008118 #22	ENSMAMG00000026805 #22	ENSMAMG00000028635 #22	ENSMAMG00000008170 #22	ENSMAMG00000027940	ENSMAMG00000008254	ENSMAMG00000008269	ENSMAMG00000025163	ENSMAMG00000008301	eya2 (ENSMAMG00000008321)	rtf2 (ENSMAMG00000008340)	ENSMAMG00000024278	tfap2c (ENSMAMG00000008361)	ENSMAMG00000008384	ENSMAMG00000008423
Zig-zag eel	DUPLICATION
Zig-zag eel	DUPLICATION
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000008435	ENSMAMG00000008423	ENSMAMG00000008384	tfap2c (ENSMAMG00000008361)	ENSMAMG00000024278	rtf2 (ENSMAMG00000008340)	eya2 (ENSMAMG00000008321)	ENSMAMG00000008301	ENSMAMG00000025163	ENSMAMG00000008269	ENSMAMG00000008254	ENSMAMG00000027940	ENSMAMG00000008170 #22	ENSMAMG00000028635 #22	ENSMAMG00000026805 #22	ENSMAMG00000008118 #22	ENSMAMG00000024553 #22	ENSMAMG00000008059 #22	ENSMAMG00000027645 #22	ENSMAMG00000008036 #22	ENSMAMG00000008019 #22	ENSMAMG00000007965	ENSMAMG00000007907	gpd1b (ENSMAMG00000006180)	ENSMAMG00000006138	ENSMAMG00000006102	ENSMAMG00000006073	rab22a (ENSMAMG00000006024)	ENSMAMG00000006008	vapb (ENSMAMG00000027105)	APCDD1L (ENSMAMG00000028091)
Zig-zag eel	MODERN SPECIES	19	cbfa2t2 (ENSMAMG00000008483)	NECAB3 (ENSMAMG00000008467)	ENSMAMG00000008450	ENSMAMG00000008435	ENSMAMG00000008423	ENSMAMG00000008384	tfap2c (ENSMAMG00000008361)	ENSMAMG00000024278	rtf2 (ENSMAMG00000008340)	eya2 (ENSMAMG00000008321)	ENSMAMG00000008301	ENSMAMG00000025163	ENSMAMG00000008269	ENSMAMG00000008254	ENSMAMG00000027940	ENSMAMG00000008170 #22	ENSMAMG00000028635 #22	ENSMAMG00000026805 #22	ENSMAMG00000008118 #22	ENSMAMG00000024553 #22	ENSMAMG00000008059 #22	ENSMAMG00000027645 #22	ENSMAMG00000008036 #22	ENSMAMG00000008019 #22	ENSMAMG00000007965	ENSMAMG00000007907	gpd1b (ENSMAMG00000006180)	ENSMAMG00000006138	ENSMAMG00000006102	ENSMAMG00000006073	rab22a (ENSMAMG00000006024)
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000008384	tfap2c (ENSMAMG00000008361)	ENSMAMG00000024278	rtf2 (ENSMAMG00000008340)	eya2 (ENSMAMG00000008321)	ENSMAMG00000008301	ENSMAMG00000025163	ENSMAMG00000008269	ENSMAMG00000008254	ENSMAMG00000027940	ENSMAMG00000008170 #22	ENSMAMG00000028635 #22	ENSMAMG00000026805 #22	ENSMAMG00000008118 #22	ENSMAMG00000024553 #22	ENSMAMG00000008059 #22	ENSMAMG00000027645 #22	ENSMAMG00000008036 #22	ENSMAMG00000008019 #22	ENSMAMG00000007965	ENSMAMG00000007907	gpd1b (ENSMAMG00000006180)	ENSMAMG00000006138	ENSMAMG00000006102	ENSMAMG00000006073	rab22a (ENSMAMG00000006024)	ENSMAMG00000006008	vapb (ENSMAMG00000027105)	APCDD1L (ENSMAMG00000028091)	ENSMAMG00000005682	ENSMAMG00000027343
Zig-zag eel	MODERN SPECIES	4	ENSMAMG00000010107	hepacama (ENSMAMG00000010077)	ENSMAMG00000010033	ENSMAMG00000010019	cbl (ENSMAMG00000010011)	ccdc153 (ENSMAMG00000010002)	GRIK4 (ENSMAMG00000009964)	ENSMAMG00000009909	tlcd5a (ENSMAMG00000024339)	mcamb (ENSMAMG00000009839)	ENSMAMG00000009824	c1qtnf5 (ENSMAMG00000024351)	ENSMAMG00000009629	ENSMAMG00000009568	ENSMAMG00000009551	ENSMAMG00000025133 #22	ENSMAMG00000009515	ENSMAMG00000009488	CHCHD2 (ENSMAMG00000025318)	PHKG1 (ENSMAMG00000009430)	psph (ENSMAMG00000009417)	NIPSNAP2 (ENSMAMG00000024589)	limk1a (ENSMAMG00000009334)	ENSMAMG00000009320	ENSMAMG00000009306	mettl16 (ENSMAMG00000009271)	pafah1b1a (ENSMAMG00000009240)	cluha (ENSMAMG00000009172)	ENSMAMG00000024900	tlcd2 (ENSMAMG00000009143)	aifm4 (ENSMAMG00000009081)
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000005654	ENSMAMG00000027343	ENSMAMG00000005682	APCDD1L (ENSMAMG00000028091)	vapb (ENSMAMG00000027105)	ENSMAMG00000006008	rab22a (ENSMAMG00000006024)	ENSMAMG00000006073	ENSMAMG00000006102	ENSMAMG00000006138	gpd1b (ENSMAMG00000006180)	ENSMAMG00000007907	ENSMAMG00000007965	ENSMAMG00000008019 #22	ENSMAMG00000008036 #22	ENSMAMG00000027645 #22	ENSMAMG00000008059 #22	ENSMAMG00000024553 #22	ENSMAMG00000008118 #22	ENSMAMG00000026805 #22	ENSMAMG00000028635 #22	ENSMAMG00000008170 #22	ENSMAMG00000027940	ENSMAMG00000008254	ENSMAMG00000008269	ENSMAMG00000025163	ENSMAMG00000008301	eya2 (ENSMAMG00000008321)	rtf2 (ENSMAMG00000008340)	ENSMAMG00000024278	tfap2c (ENSMAMG00000008361)
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000006008	rab22a (ENSMAMG00000006024)	ENSMAMG00000006073	ENSMAMG00000006102	ENSMAMG00000006138	gpd1b (ENSMAMG00000006180)	ENSMAMG00000007907	ENSMAMG00000007965	ENSMAMG00000008019 #22	ENSMAMG00000008036 #22	ENSMAMG00000027645 #22	ENSMAMG00000008059 #22	ENSMAMG00000024553 #22	ENSMAMG00000008118 #22	ENSMAMG00000026805 #22	ENSMAMG00000028635 #22	ENSMAMG00000008170 #22	ENSMAMG00000027940	ENSMAMG00000008254	ENSMAMG00000008269	ENSMAMG00000025163	ENSMAMG00000008301	eya2 (ENSMAMG00000008321)	rtf2 (ENSMAMG00000008340)	ENSMAMG00000024278	tfap2c (ENSMAMG00000008361)	ENSMAMG00000008384	ENSMAMG00000008423	ENSMAMG00000008435	ENSMAMG00000008450	NECAB3 (ENSMAMG00000008467)
Carangaria	ANCESTRAL SPECIES	3	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a
Seriola	ANCESTRAL SPECIES	61	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b
Yellowtail amberjack	MODERN SPECIES	2732										ENSSLDG00000011866	gpd1b (ENSSLDG00000011836)	smarcd1 (ENSSLDG00000011779)	ENSSLDG00000011728	ENSSLDG00000011693 #22	ENSSLDG00000011612 #22	CELA1 (ENSSLDG00000011584) #22	gls2b (ENSSLDG00000011552)	rdh5 (ENSSLDG00000011533)	bloc1s1 (ENSSLDG00000011515)	itcha (ENSSLDG00000011477)	pxmp4 (ENSSLDG00000011451)	tgm5l (ENSSLDG00000011432)	eya2 (ENSSLDG00000011400)	GCNT7 (ENSSLDG00000011387)	rtf2 (ENSSLDG00000011376)	tfap2c (ENSSLDG00000011324)
Greater amberjack	MODERN SPECIES	129	SRC (ENSSDUG00000017198)	APCDD1L (ENSSDUG00000017168)	ENSSDUG00000017159	vapb (ENSSDUG00000017146)	rab22a (ENSSDUG00000017131)	ENSSDUG00000017073	BCDIN3D (ENSSDUG00000017056)	ENSSDUG00000017046	cers5 (ENSSDUG00000017021)	gpd1b (ENSSDUG00000016994)	smarcd1 (ENSSDUG00000016945)	ENSSDUG00000016915	ENSSDUG00000016903	CELA1 (ENSSDUG00000016878) #22	ENSSDUG00000016861 #22	ENSSDUG00000016845 #22	gls2b (ENSSDUG00000016820)	rdh5 (ENSSDUG00000016790)	bloc1s1 (ENSSDUG00000016782)	itcha (ENSSDUG00000016727)	pxmp4 (ENSSDUG00000016713)	tgm5l (ENSSDUG00000016696)	eya2 (ENSSDUG00000016683)	GCNT7 (ENSSDUG00000016670)	rtf2 (ENSSDUG00000016644)	tfap2c (ENSSDUG00000016620)
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Tongue sole	DUPLICATION
Tongue sole	MODERN SPECIES	2	ipo9 (ENSCSEG00000018787)	ncoa5 (ENSCSEG00000018845)	wnt2ba (ENSCSEG00000018855)	CTTNBP2NL (ENSCSEG00000018873)	KCND3 (ENSCSEG00000018892)	INKA2 (ENSCSEG00000018903)	ENSCSEG00000018905	timm17a (ENSCSEG00000018915)	ENSCSEG00000018923	shisa4 (ENSCSEG00000018934)	ENSCSEG00000018938	ENSCSEG00000018941	smarcd1 (ENSCSEG00000018950)	ENSCSEG00000018986	CELA1 (ENSCSEG00000019002) #22	ENSCSEG00000019009 #22	CELA1 (ENSCSEG00000019011) #22	rdh5 (ENSCSEG00000019014)	bloc1s1 (ENSCSEG00000019018)	itcha (ENSCSEG00000019027)	pxmp4 (ENSCSEG00000019042)	tgm5l (ENSCSEG00000019053)	eya2 (ENSCSEG00000019079)	rtf2 (ENSCSEG00000019087)	GCNT7 (ENSCSEG00000019096)	ENSCSEG00000019102	tfap2c (ENSCSEG00000019107)	CDH22 (ENSCSEG00000019123)	ZNFX1 (ENSCSEG00000019131)	tbc1d20 (ENSCSEG00000019138)	rbck1 (ENSCSEG00000019145)
Tongue sole	MODERN SPECIES	2	ncoa5 (ENSCSEG00000018845)	wnt2ba (ENSCSEG00000018855)	CTTNBP2NL (ENSCSEG00000018873)	KCND3 (ENSCSEG00000018892)	INKA2 (ENSCSEG00000018903)	ENSCSEG00000018905	timm17a (ENSCSEG00000018915)	ENSCSEG00000018923	shisa4 (ENSCSEG00000018934)	ENSCSEG00000018938	ENSCSEG00000018941	smarcd1 (ENSCSEG00000018950)	ENSCSEG00000018986	CELA1 (ENSCSEG00000019002) #22	ENSCSEG00000019009 #22	CELA1 (ENSCSEG00000019011) #22	rdh5 (ENSCSEG00000019014)	bloc1s1 (ENSCSEG00000019018)	itcha (ENSCSEG00000019027)	pxmp4 (ENSCSEG00000019042)	tgm5l (ENSCSEG00000019053)	eya2 (ENSCSEG00000019079)	rtf2 (ENSCSEG00000019087)	GCNT7 (ENSCSEG00000019096)	ENSCSEG00000019102	tfap2c (ENSCSEG00000019107)	CDH22 (ENSCSEG00000019123)	ZNFX1 (ENSCSEG00000019131)	tbc1d20 (ENSCSEG00000019138)	rbck1 (ENSCSEG00000019145)	NECAB3 (ENSCSEG00000019158)
Turbot	MODERN SPECIES	18	ENSSMAG00000036123	ENSSMAG00000010105	rab22a (ENSSMAG00000025897)	vapb (ENSSMAG00000033879)	APCDD1L (ENSSMAG00000030079)	ENSSMAG00000010185	ENSSMAG00000025880	ENSSMAG00000010275	ENSSMAG00000010293	ENSSMAG00000010376	ENSSMAG00000010545	ENSSMAG00000010579	gpd1b (ENSSMAG00000010634)	ENSSMAG00000010671	ENSSMAG00000010746	cela1.3 (ENSSMAG00000010843) #22	gls2b (ENSSMAG00000010898)	ENSSMAG00000010928	bloc1s1 (ENSSMAG00000030060)	ENSSMAG00000010958	ENSSMAG00000011024	ENSSMAG00000011029	eya2 (ENSSMAG00000011039)	rtf2 (ENSSMAG00000009907)	ENSSMAG00000009924	tfap2c (ENSSMAG00000009883)	ENSSMAG00000011085	ENSSMAG00000011154	ENSSMAG00000011173	ENSSMAG00000011217	NECAB3 (ENSSMAG00000011230)
Eupercaria	ANCESTRAL SPECIES		ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Ballan wrasse	MODERN SPECIES	25	ENSLBEG00000003066	manbal (ENSLBEG00000003089)	SRC (ENSLBEG00000003115)	APCDD1L (ENSLBEG00000003175)	vapb (ENSLBEG00000003193)	ENSLBEG00000003221	rab22a (ENSLBEG00000003235)	ENSLBEG00000003294	BCDIN3D (ENSLBEG00000003408)	cers5 (ENSLBEG00000003440)	COX14 (ENSLBEG00000003505)	gpd1b (ENSLBEG00000003525)	smarcd1 (ENSLBEG00000003583)	ENSLBEG00000003675	CELA1 (ENSLBEG00000003713) #22	ENSLBEG00000003902 #22	gls2b (ENSLBEG00000004463)	rdh5 (ENSLBEG00000004498)	bloc1s1 (ENSLBEG00000004510)	itcha (ENSLBEG00000004533)	pxmp4 (ENSLBEG00000004596)	tgm5l (ENSLBEG00000004624)	eya2 (ENSLBEG00000004739)	GCNT7 (ENSLBEG00000004866)	rtf2 (ENSLBEG00000004829)	tfap2c (ENSLBEG00000004883)	CDH22 (ENSLBEG00000004907)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Perciformes	ANCESTRAL SPECIES		ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Cottioidei	ANCESTRAL SPECIES		ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Lumpfish	MODERN SPECIES	20	cyp24a1 (ENSCLMG00005016705)	ENSCLMG00005016704	manbal (ENSCLMG00005016703)	SRC (ENSCLMG00005016702)	APCDD1L (ENSCLMG00005016701)	vapb (ENSCLMG00005016698)	rab22a (ENSCLMG00005016697)	ENSCLMG00005014150	BCDIN3D (ENSCLMG00005014139)	ENSCLMG00005014138	cers5 (ENSCLMG00005014137)	gpd1b (ENSCLMG00005014129)	smarcd1 (ENSCLMG00005012219)	ENSCLMG00005012204	CELA1 (ENSCLMG00005012203) #22	ENSCLMG00005012166 #22	gls2b (ENSCLMG00005009007)	rdh5 (ENSCLMG00005008974)	bloc1s1 (ENSCLMG00005008973)	itcha (ENSCLMG00005001098)	pxmp4 (ENSCLMG00005001050)	tgm5l (ENSCLMG00005001046)	eya2 (ENSCLMG00005001015)	GCNT7 (ENSCLMG00005001014)	rtf2 (ENSCLMG00005001013)	tfap2c (ENSCLMG00005001012)	CDH22 (ENSCLMG00005001010)	ZNFX1 (ENSCLMG00005000864)	tbc1d20 (ENSCLMG00005000854)	rbck1 (ENSCLMG00005000804)	ENSCLMG00005000802
Stickleback	MODERN SPECIES	17	ENSGACG00000005505	ENSGACG00000005510	cyp24a1 (ENSGACG00000005512)	manbal (ENSGACG00000005545)	SRC (ENSGACG00000005548)	APCDD1L (ENSGACG00000005560)	vapb (ENSGACG00000005571)	rab22a (ENSGACG00000005608)	ENSGACG00000005643	BCDIN3D (ENSGACG00000005676)	cers5 (ENSGACG00000005678)	gpd1b (ENSGACG00000005724)	smarcd1 (ENSGACG00000005758)	ASIC1 (ENSGACG00000005765)	ENSGACG00000005769 #22	ENSGACG00000005785 #22	gls2b (ENSGACG00000005817)	rdh5 (ENSGACG00000005847)	bloc1s1 (ENSGACG00000005870)	itcha (ENSGACG00000005875)	pxmp4 (ENSGACG00000005891)	tgm5l (ENSGACG00000005904)	eya2 (ENSGACG00000005912)	rtf2 (ENSGACG00000005926)	GCNT7 (ENSGACG00000005941)	tfap2c (ENSGACG00000005944)	CDH22 (ENSGACG00000005966)	ZNFX1 (ENSGACG00000006038)	tbc1d20 (ENSGACG00000006050)	rbck1 (ENSGACG00000006056)	NECAB3 (ENSGACG00000006069)
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Pike perch	MODERN SPECIES	17	cyp24a1 (ENSSLUG00000012382)	ENSSLUG00000012354	manbal (ENSSLUG00000012345)	SRC (ENSSLUG00000010249)	APCDD1L (ENSSLUG00000010165)	vapb (ENSSLUG00000010157)	rab22a (ENSSLUG00000010128)	ENSSLUG00000007746	BCDIN3D (ENSSLUG00000007596)	COX14 (ENSSLUG00000007594)	cers5 (ENSSLUG00000007586)	gpd1b (ENSSLUG00000007575)	smarcd1 (ENSSLUG00000007148)	ENSSLUG00000006835	ENSSLUG00000006809 #22	CELA1 (ENSSLUG00000006800) #22	gls2b (ENSSLUG00000004580)	rdh5 (ENSSLUG00000004206)	rdh5 (ENSSLUG00000004157)	bloc1s1 (ENSSLUG00000004132)	itcha (ENSSLUG00000001012)	pxmp4 (ENSSLUG00000000717)	tgm5l (ENSSLUG00000000711)	eya2 (ENSSLUG00000000699)	ENSSLUG00000000690	GCNT7 (ENSSLUG00000000686)	rtf2 (ENSSLUG00000000679)	tfap2c (ENSSLUG00000000674)	CDH22 (ENSSLUG00000000666)	ZNFX1 (ENSSLUG00000000580)	tbc1d20 (ENSSLUG00000000553)
Channel bull blenny	MODERN SPECIES	19	cyp24a1 (ENSCGOG00000023265)	ENSCGOG00000023258	manbal (ENSCGOG00000023255)	SRC (ENSCGOG00000022172)	APCDD1L (ENSCGOG00000022116)	vapb (ENSCGOG00000022113)	rab22a (ENSCGOG00000022109)	ENSCGOG00000021817	BCDIN3D (ENSCGOG00000021815)	ENSCGOG00000021814	cers5 (ENSCGOG00000021810)	gpd1b (ENSCGOG00000021790)	smarcd1 (ENSCGOG00000021430)	ENSCGOG00000021385	ENSCGOG00000021382 #22	CELA1 (ENSCGOG00000021310) #22	gls2b (ENSCGOG00000020781)	rdh5 (ENSCGOG00000020700)	bloc1s1 (ENSCGOG00000020690)	itcha (ENSCGOG00000018197)	pxmp4 (ENSCGOG00000018129)	tgm5l (ENSCGOG00000018128)	eya2 (ENSCGOG00000018103)	GCNT7 (ENSCGOG00000018098)	rtf2 (ENSCGOG00000018096)	tfap2c (ENSCGOG00000018093)	ENSCGOG00000018091	CDH22 (ENSCGOG00000017329)	ZNFX1 (ENSCGOG00000017228)	tbc1d20 (ENSCGOG00000017221)	rbck1 (ENSCGOG00000017217)
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Gilthead seabream	MODERN SPECIES	20	ENSSAUG00010000659	cyp24a1 (ENSSAUG00010000663)	ENSSAUG00010000675	manbal (ENSSAUG00010000679)	SRC (ENSSAUG00010000750)	APCDD1L (ENSSAUG00010003650)	vapb (ENSSAUG00010003652)	rab22a (ENSSAUG00010003658)	ENSSAUG00010003683	BCDIN3D (ENSSAUG00010003729)	COX14 (ENSSAUG00010003732)	cers5 (ENSSAUG00010003739)	gpd1b (ENSSAUG00010003752)	smarcd1 (ENSSAUG00010003785)	ENSSAUG00010005674	cela1.3 (ENSSAUG00010005768) #22	gls2b (ENSSAUG00010005816)	rdh5 (ENSSAUG00010008774)	bloc1s1 (ENSSAUG00010008776)	itcha (ENSSAUG00010008871)	pxmp4 (ENSSAUG00010017128)	tgm5l (ENSSAUG00010017129)	eya2 (ENSSAUG00010017131)	rtf2 (ENSSAUG00010017138)	GCNT7 (ENSSAUG00010017140)	tfap2c (ENSSAUG00010017146)	ENSSAUG00010017156	ENSSAUG00010017160	CDH22 (ENSSAUG00010017167)	ZNFX1 (ENSSAUG00010017184)	tbc1d20 (ENSSAUG00010017190)
Eupercaria_incertae_sedis	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.c.a #22
Large yellow croaker	MODERN SPECIES	478	cyp24a1 (ENSLCRG00005002173)	ENSLCRG00005023759	manbal (ENSLCRG00005023753)	SRC (ENSLCRG00005023516)	APCDD1L (ENSLCRG00005023411)	vapb (ENSLCRG00005023409)	rab22a (ENSLCRG00005023408)	BCDIN3D (ENSLCRG00005023401)	ENSLCRG00005023328	ENSLCRG00005023311	cers5 (ENSLCRG00005023185)	gpd1b (ENSLCRG00005023163)	smarcd1 (ENSLCRG00005022873)	ENSLCRG00005022665	ENSLCRG00005022585 #22	CELA1 (ENSLCRG00005022562) #22	gls2b (ENSLCRG00005022519)	rdh5 (ENSLCRG00005022511)	bloc1s1 (ENSLCRG00005022499)	itcha (ENSLCRG00005022370)	pxmp4 (ENSLCRG00005022305)	tgm5l (ENSLCRG00005022303)	eya2 (ENSLCRG00005022288)	GCNT7 (ENSLCRG00005022282)	rtf2 (ENSLCRG00005022276)	tfap2c (ENSLCRG00005022266)	CDH22 (ENSLCRG00005022262)	ZNFX1 (ENSLCRG00005022240)	tbc1d20 (ENSLCRG00005022211)	rbck1 (ENSLCRG00005022205)	NECAB3 (ENSLCRG00005022194)
Clupeocephala	ANCESTRAL SPECIES	105	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.a.b	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT00940000165535	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Euteleosteomorpha	ANCESTRAL SPECIES	10	ENSGT00940000165468	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.B	ENSGT00940000168428.b.b.a	ENSGT00940000154756.A	ENSGT00940000177117	ENSGT00940000177473	ENSGT00970000196942	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b	ENSGT00940000153897.a
Acanthomorphata	ANCESTRAL SPECIES	26	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01090000260250	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Euacanthomorphacea	ANCESTRAL SPECIES	1	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01090000260250	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Percomorphaceae	ANCESTRAL SPECIES	1	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Tiger tail seahorse	MODERN SPECIES	48															ENSHCOG00000019174	CELA1 (ENSHCOG00000019200) #22	ENSHCOG00000019212 #22	ENSHCOG00000019232	rdh5 (ENSHCOG00000019277)	bloc1s1 (ENSHCOG00000019301)	itcha (ENSHCOG00000019377)	pxmp4 (ENSHCOG00000019383)	tgm5l (ENSHCOG00000019506)	eya2 (ENSHCOG00000019546)	cdc42 (ENSHCOG00000019573)	snrpe (ENSHCOG00000019590)	sox13 (ENSHCOG00000019609)	etnk2 (ENSHCOG00000019626)	ENSHCOG00000019650	slc41a1 (ENSHCOG00000019679)	ENSHCOG00000019726
Percomorphaceae_B	ANCESTRAL SPECIES	3	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Percomorphaceae_C	ANCESTRAL SPECIES	1	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Percomorphaceae_D	ANCESTRAL SPECIES	3	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Carangaria	ANCESTRAL SPECIES	3	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Pleuronectoidei	ANCESTRAL SPECIES	4	ENSGT00950000182932.C.a	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Tongue sole	MODERN SPECIES	2	ENSCSEG00000018773	ipo9 (ENSCSEG00000018787)	ncoa5 (ENSCSEG00000018845)	wnt2ba (ENSCSEG00000018855)	CTTNBP2NL (ENSCSEG00000018873)	KCND3 (ENSCSEG00000018892)	INKA2 (ENSCSEG00000018903)	ENSCSEG00000018905	timm17a (ENSCSEG00000018915)	ENSCSEG00000018923	shisa4 (ENSCSEG00000018934)	ENSCSEG00000018938	ENSCSEG00000018941	smarcd1 (ENSCSEG00000018950)	ENSCSEG00000018986	CELA1 (ENSCSEG00000019002) #22	ENSCSEG00000019009 #22	CELA1 (ENSCSEG00000019011) #22	rdh5 (ENSCSEG00000019014)	bloc1s1 (ENSCSEG00000019018)	itcha (ENSCSEG00000019027)	pxmp4 (ENSCSEG00000019042)	tgm5l (ENSCSEG00000019053)	eya2 (ENSCSEG00000019079)	rtf2 (ENSCSEG00000019087)	GCNT7 (ENSCSEG00000019096)	ENSCSEG00000019102	tfap2c (ENSCSEG00000019107)	CDH22 (ENSCSEG00000019123)	ZNFX1 (ENSCSEG00000019131)	tbc1d20 (ENSCSEG00000019138)
Carangaria_A	ANCESTRAL SPECIES	2	ENSGT01090000260005.a.a.a.b.a.a.a	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Barramundi perch	MODERN SPECIES	224															ENSLCAG00010014419	cela1.3 (ENSLCAG00010014422) #22	gls2b (ENSLCAG00010014429)	rdh5 (ENSLCAG00010014450)	bloc1s1 (ENSLCAG00010014454)	itcha (ENSLCAG00010014766)	pxmp4 (ENSLCAG00010016286)	tgm5l (ENSLCAG00010016287)	eya2 (ENSLCAG00010016289)	rtf2 (ENSLCAG00010016293)	GCNT7 (ENSLCAG00010016296)	tfap2c (ENSLCAG00010016301)	CDH22 (ENSLCAG00010016315)	ZNFX1 (ENSLCAG00010016335)	tbc1d20 (ENSLCAG00010016380)	rbck1 (ENSLCAG00010016385)	NECAB3 (ENSLCAG00010016394)
Seriola	ANCESTRAL SPECIES	61	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b
Yellowtail amberjack	DUPLICATION
Yellowtail amberjack	MODERN SPECIES	2732											ENSSLDG00000011866	gpd1b (ENSSLDG00000011836)	smarcd1 (ENSSLDG00000011779)	ENSSLDG00000011728	ENSSLDG00000011693 #22	ENSSLDG00000011612 #22	CELA1 (ENSSLDG00000011584) #22	gls2b (ENSSLDG00000011552)	rdh5 (ENSSLDG00000011533)	bloc1s1 (ENSSLDG00000011515)	itcha (ENSSLDG00000011477)	pxmp4 (ENSSLDG00000011451)	tgm5l (ENSSLDG00000011432)	eya2 (ENSSLDG00000011400)	GCNT7 (ENSSLDG00000011387)	rtf2 (ENSSLDG00000011376)	tfap2c (ENSSLDG00000011324)
Yellowtail amberjack	MODERN SPECIES	2732												ENSSLDG00000011866	gpd1b (ENSSLDG00000011836)	smarcd1 (ENSSLDG00000011779)	ENSSLDG00000011728	ENSSLDG00000011693 #22	ENSSLDG00000011612 #22	CELA1 (ENSSLDG00000011584) #22	gls2b (ENSSLDG00000011552)	rdh5 (ENSSLDG00000011533)	bloc1s1 (ENSSLDG00000011515)	itcha (ENSSLDG00000011477)	pxmp4 (ENSSLDG00000011451)	tgm5l (ENSSLDG00000011432)	eya2 (ENSSLDG00000011400)	GCNT7 (ENSSLDG00000011387)	rtf2 (ENSSLDG00000011376)	tfap2c (ENSSLDG00000011324)
Greater amberjack	DUPLICATION
Greater amberjack	MODERN SPECIES	129	manbal (ENSSDUG00000017225)	SRC (ENSSDUG00000017198)	APCDD1L (ENSSDUG00000017168)	ENSSDUG00000017159	vapb (ENSSDUG00000017146)	rab22a (ENSSDUG00000017131)	ENSSDUG00000017073	BCDIN3D (ENSSDUG00000017056)	ENSSDUG00000017046	cers5 (ENSSDUG00000017021)	gpd1b (ENSSDUG00000016994)	smarcd1 (ENSSDUG00000016945)	ENSSDUG00000016915	ENSSDUG00000016903	CELA1 (ENSSDUG00000016878) #22	ENSSDUG00000016861 #22	ENSSDUG00000016845 #22	gls2b (ENSSDUG00000016820)	rdh5 (ENSSDUG00000016790)	bloc1s1 (ENSSDUG00000016782)	itcha (ENSSDUG00000016727)	pxmp4 (ENSSDUG00000016713)	tgm5l (ENSSDUG00000016696)	eya2 (ENSSDUG00000016683)	GCNT7 (ENSSDUG00000016670)	rtf2 (ENSSDUG00000016644)	tfap2c (ENSSDUG00000016620)
Greater amberjack	MODERN SPECIES	129	ENSSDUG00000017267	manbal (ENSSDUG00000017225)	SRC (ENSSDUG00000017198)	APCDD1L (ENSSDUG00000017168)	ENSSDUG00000017159	vapb (ENSSDUG00000017146)	rab22a (ENSSDUG00000017131)	ENSSDUG00000017073	BCDIN3D (ENSSDUG00000017056)	ENSSDUG00000017046	cers5 (ENSSDUG00000017021)	gpd1b (ENSSDUG00000016994)	smarcd1 (ENSSDUG00000016945)	ENSSDUG00000016915	ENSSDUG00000016903	CELA1 (ENSSDUG00000016878) #22	ENSSDUG00000016861 #22	ENSSDUG00000016845 #22	gls2b (ENSSDUG00000016820)	rdh5 (ENSSDUG00000016790)	bloc1s1 (ENSSDUG00000016782)	itcha (ENSSDUG00000016727)	pxmp4 (ENSSDUG00000016713)	tgm5l (ENSSDUG00000016696)	eya2 (ENSSDUG00000016683)	GCNT7 (ENSSDUG00000016670)	rtf2 (ENSSDUG00000016644)	tfap2c (ENSSDUG00000016620)
Anabantaria	ANCESTRAL SPECIES		ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Anabantoidei	ANCESTRAL SPECIES	1	ENSGT00950000182932.C.a	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Climbing perch	DUPLICATION
Climbing perch	MODERN SPECIES	18	ENSATEG00000025085	ENSATEG00000025084	ENSATEG00000025083	APCDD1L (ENSATEG00000026034)	ENSATEG00000025081	vapb (ENSATEG00000028403)	rab22a (ENSATEG00000025926)	ENSATEG00000025078	ENSATEG00000025441	ENSATEG00000025076	ENSATEG00000025075	gpd1b (ENSATEG00000025074)	ENSATEG00000025073	ENSATEG00000025071	ENSATEG00000025069 #22	ENSATEG00000025068 #22	ENSATEG00000025067 #22	gls2b (ENSATEG00000025066)	ENSATEG00000025065	bloc1s1 (ENSATEG00000029358)	ENSATEG00000025063	ENSATEG00000025062	ENSATEG00000025061	ENSATEG00000025060	GCNT7 (ENSATEG00000025059)	rtf2 (ENSATEG00000025058)	tfap2c (ENSATEG00000025057)	ENSATEG00000025056	ENSATEG00000025055	ENSATEG00000025054	ENSATEG00000026465
Climbing perch	MODERN SPECIES	18	ENSATEG00000025086	ENSATEG00000025085	ENSATEG00000025084	ENSATEG00000025083	APCDD1L (ENSATEG00000026034)	ENSATEG00000025081	vapb (ENSATEG00000028403)	rab22a (ENSATEG00000025926)	ENSATEG00000025078	ENSATEG00000025441	ENSATEG00000025076	ENSATEG00000025075	gpd1b (ENSATEG00000025074)	ENSATEG00000025073	ENSATEG00000025071	ENSATEG00000025069 #22	ENSATEG00000025068 #22	ENSATEG00000025067 #22	gls2b (ENSATEG00000025066)	ENSATEG00000025065	bloc1s1 (ENSATEG00000029358)	ENSATEG00000025063	ENSATEG00000025062	ENSATEG00000025061	ENSATEG00000025060	GCNT7 (ENSATEG00000025059)	rtf2 (ENSATEG00000025058)	tfap2c (ENSATEG00000025057)	ENSATEG00000025056	ENSATEG00000025055	ENSATEG00000025054
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	16	ENSBSLG00000010125	manbal (ENSBSLG00000010115)	SRC (ENSBSLG00000009053)	APCDD1L (ENSBSLG00000008903)	ENSBSLG00000008865	vapb (ENSBSLG00000008858)	rab22a (ENSBSLG00000008852)	ENSBSLG00000008379	BCDIN3D (ENSBSLG00000008308)	COX14 (ENSBSLG00000008292)	cers5 (ENSBSLG00000025925)	gpd1b (ENSBSLG00000025924)	smarcd1 (ENSBSLG00000025923)	ENSBSLG00000025922	ENSBSLG00000025921 #22	ENSBSLG00000025920 #22	CELA1 (ENSBSLG00000025919) #22	rdh5 (ENSBSLG00000025918)	bloc1s1 (ENSBSLG00000025917)	itcha (ENSBSLG00000025915)	pxmp4 (ENSBSLG00000025907)	tgm5l (ENSBSLG00000025906)	eya2 (ENSBSLG00000025903)	GCNT7 (ENSBSLG00000025902)	rtf2 (ENSBSLG00000025901)	tfap2c (ENSBSLG00000025900)	ENSBSLG00000025899	CDH22 (ENSBSLG00000025897)	ZNFX1 (ENSBSLG00000025896)	tbc1d20 (ENSBSLG00000025895)	rbck1 (ENSBSLG00000025893)
Siamese fighting fish	MODERN SPECIES	16	cyp24a1 (ENSBSLG00000010136)	ENSBSLG00000010125	manbal (ENSBSLG00000010115)	SRC (ENSBSLG00000009053)	APCDD1L (ENSBSLG00000008903)	ENSBSLG00000008865	vapb (ENSBSLG00000008858)	rab22a (ENSBSLG00000008852)	ENSBSLG00000008379	BCDIN3D (ENSBSLG00000008308)	COX14 (ENSBSLG00000008292)	cers5 (ENSBSLG00000025925)	gpd1b (ENSBSLG00000025924)	smarcd1 (ENSBSLG00000025923)	ENSBSLG00000025922	ENSBSLG00000025921 #22	ENSBSLG00000025920 #22	CELA1 (ENSBSLG00000025919) #22	rdh5 (ENSBSLG00000025918)	bloc1s1 (ENSBSLG00000025917)	itcha (ENSBSLG00000025915)	pxmp4 (ENSBSLG00000025907)	tgm5l (ENSBSLG00000025906)	eya2 (ENSBSLG00000025903)	GCNT7 (ENSBSLG00000025902)	rtf2 (ENSBSLG00000025901)	tfap2c (ENSBSLG00000025900)	ENSBSLG00000025899	CDH22 (ENSBSLG00000025897)	ZNFX1 (ENSBSLG00000025896)	tbc1d20 (ENSBSLG00000025895)
Zig-zag eel	DUPLICATION
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000005630	ENSMAMG00000005654	ENSMAMG00000027343	ENSMAMG00000005682	APCDD1L (ENSMAMG00000028091)	vapb (ENSMAMG00000027105)	ENSMAMG00000006008	rab22a (ENSMAMG00000006024)	ENSMAMG00000006073	ENSMAMG00000006102	ENSMAMG00000006138	gpd1b (ENSMAMG00000006180)	ENSMAMG00000007907	ENSMAMG00000007965	ENSMAMG00000008019 #22	ENSMAMG00000008036 #22	ENSMAMG00000027645 #22	ENSMAMG00000008059 #22	ENSMAMG00000024553 #22	ENSMAMG00000008118 #22	ENSMAMG00000026805 #22	ENSMAMG00000028635 #22	ENSMAMG00000008170 #22	ENSMAMG00000027940	ENSMAMG00000008254	ENSMAMG00000008269	ENSMAMG00000025163	ENSMAMG00000008301	eya2 (ENSMAMG00000008321)	rtf2 (ENSMAMG00000008340)	ENSMAMG00000024278
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000005617	ENSMAMG00000005630	ENSMAMG00000005654	ENSMAMG00000027343	ENSMAMG00000005682	APCDD1L (ENSMAMG00000028091)	vapb (ENSMAMG00000027105)	ENSMAMG00000006008	rab22a (ENSMAMG00000006024)	ENSMAMG00000006073	ENSMAMG00000006102	ENSMAMG00000006138	gpd1b (ENSMAMG00000006180)	ENSMAMG00000007907	ENSMAMG00000007965	ENSMAMG00000008019 #22	ENSMAMG00000008036 #22	ENSMAMG00000027645 #22	ENSMAMG00000008059 #22	ENSMAMG00000024553 #22	ENSMAMG00000008118 #22	ENSMAMG00000026805 #22	ENSMAMG00000028635 #22	ENSMAMG00000008170 #22	ENSMAMG00000027940	ENSMAMG00000008254	ENSMAMG00000008269	ENSMAMG00000025163	ENSMAMG00000008301	eya2 (ENSMAMG00000008321)	rtf2 (ENSMAMG00000008340)
Eupercaria	ANCESTRAL SPECIES		ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Eupecaria_A	ANCESTRAL SPECIES		ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Ballan wrasse	MODERN SPECIES	25	cyp24a1 (ENSLBEG00000003011)	ENSLBEG00000003066	manbal (ENSLBEG00000003089)	SRC (ENSLBEG00000003115)	APCDD1L (ENSLBEG00000003175)	vapb (ENSLBEG00000003193)	ENSLBEG00000003221	rab22a (ENSLBEG00000003235)	ENSLBEG00000003294	BCDIN3D (ENSLBEG00000003408)	cers5 (ENSLBEG00000003440)	COX14 (ENSLBEG00000003505)	gpd1b (ENSLBEG00000003525)	smarcd1 (ENSLBEG00000003583)	ENSLBEG00000003675	CELA1 (ENSLBEG00000003713) #22	ENSLBEG00000003902 #22	gls2b (ENSLBEG00000004463)	rdh5 (ENSLBEG00000004498)	bloc1s1 (ENSLBEG00000004510)	itcha (ENSLBEG00000004533)	pxmp4 (ENSLBEG00000004596)	tgm5l (ENSLBEG00000004624)	eya2 (ENSLBEG00000004739)	GCNT7 (ENSLBEG00000004866)	rtf2 (ENSLBEG00000004829)	tfap2c (ENSLBEG00000004883)	CDH22 (ENSLBEG00000004907)
Eupecaria_B	ANCESTRAL SPECIES	2	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Perciformes	ANCESTRAL SPECIES		ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b
Perciformes_a	ANCESTRAL SPECIES	5	ENSGT00950000182932.C.a	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b
Pike perch	MODERN SPECIES	17	ENSSLUG00000012463	cyp24a1 (ENSSLUG00000012382)	ENSSLUG00000012354	manbal (ENSSLUG00000012345)	SRC (ENSSLUG00000010249)	APCDD1L (ENSSLUG00000010165)	vapb (ENSSLUG00000010157)	rab22a (ENSSLUG00000010128)	ENSSLUG00000007746	BCDIN3D (ENSSLUG00000007596)	COX14 (ENSSLUG00000007594)	cers5 (ENSSLUG00000007586)	gpd1b (ENSSLUG00000007575)	smarcd1 (ENSSLUG00000007148)	ENSSLUG00000006835	ENSSLUG00000006809 #22	CELA1 (ENSSLUG00000006800) #22	gls2b (ENSSLUG00000004580)	rdh5 (ENSSLUG00000004206)	rdh5 (ENSSLUG00000004157)	bloc1s1 (ENSSLUG00000004132)	itcha (ENSSLUG00000001012)	pxmp4 (ENSSLUG00000000717)	tgm5l (ENSSLUG00000000711)	eya2 (ENSSLUG00000000699)	ENSSLUG00000000690	GCNT7 (ENSSLUG00000000686)	rtf2 (ENSSLUG00000000679)	tfap2c (ENSSLUG00000000674)	CDH22 (ENSSLUG00000000666)	ZNFX1 (ENSSLUG00000000580)
Channel bull blenny	MODERN SPECIES	19	ENSCGOG00000023272	cyp24a1 (ENSCGOG00000023265)	ENSCGOG00000023258	manbal (ENSCGOG00000023255)	SRC (ENSCGOG00000022172)	APCDD1L (ENSCGOG00000022116)	vapb (ENSCGOG00000022113)	rab22a (ENSCGOG00000022109)	ENSCGOG00000021817	BCDIN3D (ENSCGOG00000021815)	ENSCGOG00000021814	cers5 (ENSCGOG00000021810)	gpd1b (ENSCGOG00000021790)	smarcd1 (ENSCGOG00000021430)	ENSCGOG00000021385	ENSCGOG00000021382 #22	CELA1 (ENSCGOG00000021310) #22	gls2b (ENSCGOG00000020781)	rdh5 (ENSCGOG00000020700)	bloc1s1 (ENSCGOG00000020690)	itcha (ENSCGOG00000018197)	pxmp4 (ENSCGOG00000018129)	tgm5l (ENSCGOG00000018128)	eya2 (ENSCGOG00000018103)	GCNT7 (ENSCGOG00000018098)	rtf2 (ENSCGOG00000018096)	tfap2c (ENSCGOG00000018093)	ENSCGOG00000018091	CDH22 (ENSCGOG00000017329)	ZNFX1 (ENSCGOG00000017228)	tbc1d20 (ENSCGOG00000017221)
Cottioidei	ANCESTRAL SPECIES		ENSGT00950000182932.C.a	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Lumpfish	MODERN SPECIES	20	ENSCLMG00005016707	cyp24a1 (ENSCLMG00005016705)	ENSCLMG00005016704	manbal (ENSCLMG00005016703)	SRC (ENSCLMG00005016702)	APCDD1L (ENSCLMG00005016701)	vapb (ENSCLMG00005016698)	rab22a (ENSCLMG00005016697)	ENSCLMG00005014150	BCDIN3D (ENSCLMG00005014139)	ENSCLMG00005014138	cers5 (ENSCLMG00005014137)	gpd1b (ENSCLMG00005014129)	smarcd1 (ENSCLMG00005012219)	ENSCLMG00005012204	CELA1 (ENSCLMG00005012203) #22	ENSCLMG00005012166 #22	gls2b (ENSCLMG00005009007)	rdh5 (ENSCLMG00005008974)	bloc1s1 (ENSCLMG00005008973)	itcha (ENSCLMG00005001098)	pxmp4 (ENSCLMG00005001050)	tgm5l (ENSCLMG00005001046)	eya2 (ENSCLMG00005001015)	GCNT7 (ENSCLMG00005001014)	rtf2 (ENSCLMG00005001013)	tfap2c (ENSCLMG00005001012)	CDH22 (ENSCLMG00005001010)	ZNFX1 (ENSCLMG00005000864)	tbc1d20 (ENSCLMG00005000854)	rbck1 (ENSCLMG00005000804)
Stickleback	MODERN SPECIES	17	ADORA3 (ENSGACG00000005499)	ENSGACG00000005505	ENSGACG00000005510	cyp24a1 (ENSGACG00000005512)	manbal (ENSGACG00000005545)	SRC (ENSGACG00000005548)	APCDD1L (ENSGACG00000005560)	vapb (ENSGACG00000005571)	rab22a (ENSGACG00000005608)	ENSGACG00000005643	BCDIN3D (ENSGACG00000005676)	cers5 (ENSGACG00000005678)	gpd1b (ENSGACG00000005724)	smarcd1 (ENSGACG00000005758)	ASIC1 (ENSGACG00000005765)	ENSGACG00000005769 #22	ENSGACG00000005785 #22	gls2b (ENSGACG00000005817)	rdh5 (ENSGACG00000005847)	bloc1s1 (ENSGACG00000005870)	itcha (ENSGACG00000005875)	pxmp4 (ENSGACG00000005891)	tgm5l (ENSGACG00000005904)	eya2 (ENSGACG00000005912)	rtf2 (ENSGACG00000005926)	GCNT7 (ENSGACG00000005941)	tfap2c (ENSGACG00000005944)	CDH22 (ENSGACG00000005966)	ZNFX1 (ENSGACG00000006038)	tbc1d20 (ENSGACG00000006050)	rbck1 (ENSGACG00000006056)
Eupecaria_C	ANCESTRAL SPECIES		ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Eupercaria_incertae_sedis	ANCESTRAL SPECIES		ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00950000183131.a.f
Large yellow croaker	MODERN SPECIES	478	ENSLCRG00005002250	cyp24a1 (ENSLCRG00005002173)	ENSLCRG00005023759	manbal (ENSLCRG00005023753)	SRC (ENSLCRG00005023516)	APCDD1L (ENSLCRG00005023411)	vapb (ENSLCRG00005023409)	rab22a (ENSLCRG00005023408)	BCDIN3D (ENSLCRG00005023401)	ENSLCRG00005023328	ENSLCRG00005023311	cers5 (ENSLCRG00005023185)	gpd1b (ENSLCRG00005023163)	smarcd1 (ENSLCRG00005022873)	ENSLCRG00005022665	ENSLCRG00005022585 #22	CELA1 (ENSLCRG00005022562) #22	gls2b (ENSLCRG00005022519)	rdh5 (ENSLCRG00005022511)	bloc1s1 (ENSLCRG00005022499)	itcha (ENSLCRG00005022370)	pxmp4 (ENSLCRG00005022305)	tgm5l (ENSLCRG00005022303)	eya2 (ENSLCRG00005022288)	GCNT7 (ENSLCRG00005022282)	rtf2 (ENSLCRG00005022276)	tfap2c (ENSLCRG00005022266)	CDH22 (ENSLCRG00005022262)	ZNFX1 (ENSLCRG00005022240)	tbc1d20 (ENSLCRG00005022211)	rbck1 (ENSLCRG00005022205)
European seabass	MODERN SPECIES	10	ENSDLAG00005019971	ENSDLAG00005027016	ENSDLAG00005019861	ENSDLAG00005019843	ENSDLAG00005019837	SRC (ENSDLAG00005019638)	APCDD1L (ENSDLAG00005026370)	ENSDLAG00005019618	VAPB (ENSDLAG00005028197)	rab22a (ENSDLAG00005028584)	ENSDLAG00005019083	LASS5 (ENSDLAG00005028726)	gpd1b (ENSDLAG00005019000)	ENSDLAG00005017734	ENSDLAG00005017249	cela1.3 (ENSDLAG00005017136) #22	gls2b (ENSDLAG00005015882)	ENSDLAG00005015804	bloc1s1 (ENSDLAG00005015781)	ENSDLAG00005013709	ENSDLAG00005013666	ENSDLAG00005013642	eya2 (ENSDLAG00005013401)	GCNT7 (ENSDLAG00005013362)	rtf2 (ENSDLAG00005026993)	TFAP2C (ENSDLAG00005013308)	CDH22 (ENSDLAG00005013300)	ENSDLAG00005012780	TBC1D20 (ENSDLAG00005028710)	ENSDLAG00005012710	NECAB1 (ENSDLAG00005012677)
Tetraodontidae	ANCESTRAL SPECIES	1	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244888.a.b	ENSGT00940000166043	ENSGT00940000159587	ENSGT00940000158083.b	ENSGT00940000159517	ENSGT00950000183188.A.a.a	ENSGT00940000160203	ENSGT00390000015124	ENSGT00390000016940.c.a.b	ENSGT00940000158593.a	ENSGT00390000003749
Fugu	MODERN SPECIES	10	ENSTRUG00000030610	cyp24a1 (ENSTRUG00000018343)	ENSTRUG00000018363	manbal (ENSTRUG00000018365)	SRC (ENSTRUG00000018366)	APCDD1L (ENSTRUG00000018376)	vapb (ENSTRUG00000018378)	rab22a (ENSTRUG00000018380)	ENSTRUG00000018385	BCDIN3D (ENSTRUG00000018395)	cers5 (ENSTRUG00000018396)	COX14 (ENSTRUG00000022565)	gpd1b (ENSTRUG00000018403)	smarcd1 (ENSTRUG00000018409)	ENSTRUG00000018414	cela1.3 (ENSTRUG00000018425) #22	rdh5 (ENSTRUG00000018431)	bloc1s1 (ENSTRUG00000021572)	itcha (ENSTRUG00000018437)	pxmp4 (ENSTRUG00000018456)	gdf11 (ENSTRUG00000018458)	avil (ENSTRUG00000018463)	olfml3b (ENSTRUG00000029441)	cdk2 (ENSTRUG00000018471)	pmela (ENSTRUG00000018477)	prph (ENSTRUG00000018479)	timeless (ENSTRUG00000018488)	ENSTRUG00000018492	MMP19 (ENSTRUG00000018496)	suox (ENSTRUG00000020321)	cyp27b1 (ENSTRUG00000018507)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	2	ENSTNIG00000000551	cyp24a1 (ENSTNIG00000018272)	ENSTNIG00000018271	SRC (ENSTNIG00000018270)	APCDD1L (ENSTNIG00000018269)	vapb (ENSTNIG00000018268)	rab22a (ENSTNIG00000018267)	ENSTNIG00000018266	cers5 (ENSTNIG00000018265)	gpd1b (ENSTNIG00000018264)	smarcd1 (ENSTNIG00000018263)	ENSTNIG00000018262	ENSTNIG00000018261	ENSTNIG00000018260 #22	ENSTNIG00000018259 #22	ENSTNIG00000018258 #22	bloc1s1 (ENSTNIG00000018257)	itcha (ENSTNIG00000018256)	pxmp4 (ENSTNIG00000018255)	GPR25 (ENSTNIG00000018254)	gdf11 (ENSTNIG00000018253)	avil (ENSTNIG00000018252)	olfml3b (ENSTNIG00000018251)	cdk2 (ENSTNIG00000018250)	pmela (ENSTNIG00000018249)	prph (ENSTNIG00000018248)	timeless (ENSTNIG00000018247)	ENSTNIG00000002355	MMP19 (ENSTNIG00000018246)	suox (ENSTNIG00000018245)	mcrs1 (ENSTNIG00000018244)
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	2	ENSTNIG00000018273	ENSTNIG00000000551	cyp24a1 (ENSTNIG00000018272)	ENSTNIG00000018271	SRC (ENSTNIG00000018270)	APCDD1L (ENSTNIG00000018269)	vapb (ENSTNIG00000018268)	rab22a (ENSTNIG00000018267)	ENSTNIG00000018266	cers5 (ENSTNIG00000018265)	gpd1b (ENSTNIG00000018264)	smarcd1 (ENSTNIG00000018263)	ENSTNIG00000018262	ENSTNIG00000018261	ENSTNIG00000018260 #22	ENSTNIG00000018259 #22	ENSTNIG00000018258 #22	bloc1s1 (ENSTNIG00000018257)	itcha (ENSTNIG00000018256)	pxmp4 (ENSTNIG00000018255)	GPR25 (ENSTNIG00000018254)	gdf11 (ENSTNIG00000018253)	avil (ENSTNIG00000018252)	olfml3b (ENSTNIG00000018251)	cdk2 (ENSTNIG00000018250)	pmela (ENSTNIG00000018249)	prph (ENSTNIG00000018248)	timeless (ENSTNIG00000018247)	ENSTNIG00000002355	MMP19 (ENSTNIG00000018246)	suox (ENSTNIG00000018245)
Tetraodon	MODERN SPECIES	2	ENSTNIG00000018274	ENSTNIG00000018273	ENSTNIG00000000551	cyp24a1 (ENSTNIG00000018272)	ENSTNIG00000018271	SRC (ENSTNIG00000018270)	APCDD1L (ENSTNIG00000018269)	vapb (ENSTNIG00000018268)	rab22a (ENSTNIG00000018267)	ENSTNIG00000018266	cers5 (ENSTNIG00000018265)	gpd1b (ENSTNIG00000018264)	smarcd1 (ENSTNIG00000018263)	ENSTNIG00000018262	ENSTNIG00000018261	ENSTNIG00000018260 #22	ENSTNIG00000018259 #22	ENSTNIG00000018258 #22	bloc1s1 (ENSTNIG00000018257)	itcha (ENSTNIG00000018256)	pxmp4 (ENSTNIG00000018255)	GPR25 (ENSTNIG00000018254)	gdf11 (ENSTNIG00000018253)	avil (ENSTNIG00000018252)	olfml3b (ENSTNIG00000018251)	cdk2 (ENSTNIG00000018250)	pmela (ENSTNIG00000018249)	prph (ENSTNIG00000018248)	timeless (ENSTNIG00000018247)	ENSTNIG00000002355	MMP19 (ENSTNIG00000018246)
Ovalentaria	ANCESTRAL SPECIES	2	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Ovalentaria_B	ANCESTRAL SPECIES	5	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Pomacentridae	ANCESTRAL SPECIES	3	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Pomacentridae_A	DUPLICATION
Pomacentridae_A	ANCESTRAL SPECIES	38	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.n #22	ENSGT01030000234528.B.b.a.a.a.c.b.m #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Amphiprion	ANCESTRAL SPECIES	49	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000164727	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.n #22	ENSGT01030000234528.B.b.a.a.a.c.b.m #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376
Orange clownfish	MODERN SPECIES	20	SRC (ENSAPEG00000011301)	APCDD1L (ENSAPEG00000011272)	ENSAPEG00000011256	vapb (ENSAPEG00000011238)	rab22a (ENSAPEG00000011209)	ENSAPEG00000011194	BCDIN3D (ENSAPEG00000011187)	COX14 (ENSAPEG00000011178)	cers5 (ENSAPEG00000011115)	gpd1b (ENSAPEG00000011103)	smarcd1 (ENSAPEG00000011033)	asic1b (ENSAPEG00000011011)	ENSAPEG00000010964	ENSAPEG00000010940	ENSAPEG00000010926 #22	ENSAPEG00000010903 #22	ENSAPEG00000010893 #22	gls2b (ENSAPEG00000010645)	rdh5 (ENSAPEG00000010620)	bloc1s1 (ENSAPEG00000010599)	itcha (ENSAPEG00000010493)	pxmp4 (ENSAPEG00000010464)	tgm5l (ENSAPEG00000010380)	eya2 (ENSAPEG00000010221)	GCNT7 (ENSAPEG00000010208)	rtf2 (ENSAPEG00000010180)	tfap2c (ENSAPEG00000010147)	CDH22 (ENSAPEG00000010097)	apoda.1 (ENSAPEG00000010066)	st7l (ENSAPEG00000009999)	wnt2ba (ENSAPEG00000009963)
Clown anemonefish	MODERN SPECIES	1542										COX14 (ENSAOCG00000000163)	cers5 (ENSAOCG00000004513)	gpd1b (ENSAOCG00000004532)	smarcd1 (ENSAOCG00000004566)	ENSAOCG00000004608	ENSAOCG00000004625 #22	ENSAOCG00000004638 #22	CELA1 (ENSAOCG00000004649) #22	gls2b (ENSAOCG00000000176)	rdh5 (ENSAOCG00000000179)	bloc1s1 (ENSAOCG00000004733)	itcha (ENSAOCG00000004786)	pxmp4 (ENSAOCG00000004804)	tgm5l (ENSAOCG00000004823)	eya2 (ENSAOCG00000004836)	GCNT7 (ENSAOCG00000004849)	rtf2 (ENSAOCG00000004859)	tfap2c (ENSAOCG00000000187)
Spiny chromis	DUPLICATION
Spiny chromis	DUPLICATION
Spiny chromis	MODERN SPECIES	730											ENSAPOG00000012300	cers5 (ENSAPOG00000012377)	gpd1b (ENSAPOG00000012425)	smarcd1 (ENSAPOG00000012508)	ASIC1 (ENSAPOG00000012549)	ENSAPOG00000012571 #22
Spiny chromis	MODERN SPECIES	3291																ENSAPOG00000021386 #22
Spiny chromis	MODERN SPECIES	1197																ENSAPOG00000011217 #22	CELA1 (ENSAPOG00000011149) #22	gls2b (ENSAPOG00000011132)	ENSAPOG00000011106	rdh5 (ENSAPOG00000011082)	bloc1s1 (ENSAPOG00000011068)	itcha (ENSAPOG00000011026)	pxmp4 (ENSAPOG00000011009)	tgm5l (ENSAPOG00000011004)	eya2 (ENSAPOG00000010951)	ENSAPOG00000010930
Pomacentridae_A	ANCESTRAL SPECIES	38	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.n #22	ENSGT01030000234528.B.b.a.a.a.c.b.m #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a
Amphiprion	ANCESTRAL SPECIES	49	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000164727	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.n #22	ENSGT01030000234528.B.b.a.a.a.c.b.m #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376
Orange clownfish	MODERN SPECIES	20	manbal (ENSAPEG00000011331)	SRC (ENSAPEG00000011301)	APCDD1L (ENSAPEG00000011272)	ENSAPEG00000011256	vapb (ENSAPEG00000011238)	rab22a (ENSAPEG00000011209)	ENSAPEG00000011194	BCDIN3D (ENSAPEG00000011187)	COX14 (ENSAPEG00000011178)	cers5 (ENSAPEG00000011115)	gpd1b (ENSAPEG00000011103)	smarcd1 (ENSAPEG00000011033)	asic1b (ENSAPEG00000011011)	ENSAPEG00000010964	ENSAPEG00000010940	ENSAPEG00000010926 #22	ENSAPEG00000010903 #22	ENSAPEG00000010893 #22	gls2b (ENSAPEG00000010645)	rdh5 (ENSAPEG00000010620)	bloc1s1 (ENSAPEG00000010599)	itcha (ENSAPEG00000010493)	pxmp4 (ENSAPEG00000010464)	tgm5l (ENSAPEG00000010380)	eya2 (ENSAPEG00000010221)	GCNT7 (ENSAPEG00000010208)	rtf2 (ENSAPEG00000010180)	tfap2c (ENSAPEG00000010147)	CDH22 (ENSAPEG00000010097)	apoda.1 (ENSAPEG00000010066)	st7l (ENSAPEG00000009999)
Clown anemonefish	MODERN SPECIES	1542											COX14 (ENSAOCG00000000163)	cers5 (ENSAOCG00000004513)	gpd1b (ENSAOCG00000004532)	smarcd1 (ENSAOCG00000004566)	ENSAOCG00000004608	ENSAOCG00000004625 #22	ENSAOCG00000004638 #22	CELA1 (ENSAOCG00000004649) #22	gls2b (ENSAOCG00000000176)	rdh5 (ENSAOCG00000000179)	bloc1s1 (ENSAOCG00000004733)	itcha (ENSAOCG00000004786)	pxmp4 (ENSAOCG00000004804)	tgm5l (ENSAOCG00000004823)	eya2 (ENSAOCG00000004836)	GCNT7 (ENSAOCG00000004849)	rtf2 (ENSAOCG00000004859)	tfap2c (ENSAOCG00000000187)
Spiny chromis	MODERN SPECIES	3556																ENSAPOG00000007267 #22
Bicolor damselfish	MODERN SPECIES	387				APCDD1L (ENSSPAG00000021269)	vapb (ENSSPAG00000021280)	ENSSPAG00000021322	rab22a (ENSSPAG00000021333)	ENSSPAG00000021358	BCDIN3D (ENSSPAG00000021374)	cers5 (ENSSPAG00000021381)	COX14 (ENSSPAG00000021418)	gpd1b (ENSSPAG00000021426)	smarcd1 (ENSSPAG00000021444)	ENSSPAG00000021468	asic1b (ENSSPAG00000021496)	ENSSPAG00000021521 #22	ENSSPAG00000021532 #22	gls2b (ENSSPAG00000021545)	rdh5 (ENSSPAG00000021564)	bloc1s1 (ENSSPAG00000021570)	itcha (ENSSPAG00000021574)	pxmp4 (ENSSPAG00000021603)	tgm5l (ENSSPAG00000021620)	eya2 (ENSSPAG00000000023)	rtf2 (ENSSPAG00000000048)	GCNT7 (ENSSPAG00000000067)	tfap2c (ENSSPAG00000000077)
Cichlidae	ANCESTRAL SPECIES	1	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Pseudocrenilabrinae	ANCESTRAL SPECIES	4	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	2	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Haplochromini	ANCESTRAL SPECIES	1	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a.g.b	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Burton s mouthbrooder	MODERN SPECIES	640	cyp24a1 (ENSHBUG00000003597)	ENSHBUG00000003566	manbal (ENSHBUG00000003540)	SRC (ENSHBUG00000003523)	APCDD1L (ENSHBUG00000003483)	vapb (ENSHBUG00000003466)	ENSHBUG00000003453	rab22a (ENSHBUG00000003434)	ENSHBUG00000003424	BCDIN3D (ENSHBUG00000003414)	cers5 (ENSHBUG00000003401)	COX14 (ENSHBUG00000003352)	gpd1b (ENSHBUG00000003340)	smarcd1 (ENSHBUG00000003305)	ENSHBUG00000003248	ENSHBUG00000003213 #22	ENSHBUG00000003188 #22	gls2b (ENSHBUG00000003167)	rdh5 (ENSHBUG00000003111)	bloc1s1 (ENSHBUG00000003105)
Haplochromini_A	ANCESTRAL SPECIES		ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a.g.b	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
P. nyererei	MODERN SPECIES	329	manbal (ENSPNYG00000006595)	SRC (ENSPNYG00000006607)	APCDD1L (ENSPNYG00000006624)	vapb (ENSPNYG00000006635)	ENSPNYG00000006653	rab22a (ENSPNYG00000006672)	ENSPNYG00000006706	BCDIN3D (ENSPNYG00000006788)	COX14 (ENSPNYG00000006800)	cers5 (ENSPNYG00000006808)	gpd1b (ENSPNYG00000006834)	smarcd1 (ENSPNYG00000006863)	ENSPNYG00000006903	asic1b (ENSPNYG00000006933)	ENSPNYG00000006942	ENSPNYG00000006953 #22	ENSPNYG00000006973 #22	gls2b (ENSPNYG00000006994)	rdh5 (ENSPNYG00000007057)	bloc1s1 (ENSPNYG00000007092)	itcha (ENSPNYG00000007113)	pxmp4 (ENSPNYG00000007129)
Haplochromini_B	ANCESTRAL SPECIES		ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a.g.b	ENSGT00950000182978.A.a.b.b	ENSGT00390000010923	ENSGT00940000160402	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Zebra mbuna	DUPLICATION
Zebra mbuna	MODERN SPECIES	613																ENSMZEG00005026233 #22	CELA1 (ENSMZEG00005026235) #22	gls2b (ENSMZEG00005026238)	rdh5 (ENSMZEG00005003414)	bloc1s1 (ENSMZEG00005003438)	itcha (ENSMZEG00005003486)
Zebra mbuna	MODERN SPECIES	1108	cyp24a1 (ENSMZEG00005003964)	ENSMZEG00005003991	manbal (ENSMZEG00005004018)	SRC (ENSMZEG00005004034)	APCDD1L (ENSMZEG00005004075)	vapb (ENSMZEG00005004084)	ENSMZEG00005004112	rab22a (ENSMZEG00005004122)	ENSMZEG00005004145	BCDIN3D (ENSMZEG00005004155)	cers5 (ENSMZEG00005004167)	COX14 (ENSMZEG00005004196)	gpd1b (ENSMZEG00005004204)	smarcd1 (ENSMZEG00005004231)	ENSMZEG00005004276	ENSMZEG00005004335 #22	ENSMZEG00005004366 #22	gls2b (ENSMZEG00005004392)	rdh5 (ENSMZEG00005004459)	bloc1s1 (ENSMZEG00005004851)	itcha (ENSMZEG00005004876)	pxmp4 (ENSMZEG00005004941)	tgm5l (ENSMZEG00005004957)	ENSMZEG00005004976	tgm5l (ENSMZEG00005005020)	eya2 (ENSMZEG00005005047)	rtf2 (ENSMZEG00005005069)	GCNT7 (ENSMZEG00005005090)	tfap2c (ENSMZEG00005005108)	ENSMZEG00005005156	ENSMZEG00005005168
Eastern happy	MODERN SPECIES	17	cyp24a1 (ENSACLG00000021675)	ENSACLG00000021643	manbal (ENSACLG00000021617)	SRC (ENSACLG00000021545)	APCDD1L (ENSACLG00000021541)	ENSACLG00000021530	vapb (ENSACLG00000021519)	rab22a (ENSACLG00000021470)	ENSACLG00000021377	BCDIN3D (ENSACLG00000021365)	COX14 (ENSACLG00000021353)	cers5 (ENSACLG00000021313)	gpd1b (ENSACLG00000021241)	smarcd1 (ENSACLG00000021145)	ENSACLG00000021069	ENSACLG00000020985 #22	ENSACLG00000020955 #22	gls2b (ENSACLG00000020848)	rdh5 (ENSACLG00000020839)	bloc1s1 (ENSACLG00000020823)	itcha (ENSACLG00000020726)	tgm5l (ENSACLG00000020666)	eya2 (ENSACLG00000020618)	GCNT7 (ENSACLG00000020592)	rtf2 (ENSACLG00000020561)	tfap2c (ENSACLG00000020525)	CDH22 (ENSACLG00000020470)	ZNFX1 (ENSACLG00000020441)	tbc1d20 (ENSACLG00000020409)	rbck1 (ENSACLG00000020380)	NECAB3 (ENSACLG00000020364)
Lyretail cichlid	MODERN SPECIES	294	ENSNBRG00000007234	manbal (ENSNBRG00000007226)	SRC (ENSNBRG00000007194)	ENSNBRG00000007179	vapb (ENSNBRG00000007158)	rab22a (ENSNBRG00000007131)	ENSNBRG00000007113	BCDIN3D (ENSNBRG00000007102)	COX14 (ENSNBRG00000007094)	cers5 (ENSNBRG00000007064)	gpd1b (ENSNBRG00000007029)	smarcd1 (ENSNBRG00000006998)	asic1b (ENSNBRG00000006979)	ENSNBRG00000006949	ENSNBRG00000006936	ENSNBRG00000006924 #22	CELA1 (ENSNBRG00000006912) #22	gls2b (ENSNBRG00000006743)	rdh5 (ENSNBRG00000006686)	bloc1s1 (ENSNBRG00000006675)	itcha (ENSNBRG00000006618)	pxmp4 (ENSNBRG00000006589)	eya2 (ENSNBRG00000006489)	GCNT7 (ENSNBRG00000006446)	rtf2 (ENSNBRG00000006431)	tfap2c (ENSNBRG00000006405)	CDH22 (ENSNBRG00000006308)	ZNFX1 (ENSNBRG00000006236)	rbck1 (ENSNBRG00000006179)	ENSNBRG00000006132	cbfa2t2 (ENSNBRG00000006093)
Midas cichlid	MODERN SPECIES	423	SRC (ENSACIG00000013925)	APCDD1L (ENSACIG00000013955)	vapb (ENSACIG00000013992)	rab22a (ENSACIG00000014012)	ENSACIG00000014039	ENSACIG00000014060	ENSACIG00000014109	BCDIN3D (ENSACIG00000014124)	COX14 (ENSACIG00000014133)	cers5 (ENSACIG00000014148)	gpd1b (ENSACIG00000014172)	smarcd1 (ENSACIG00000014199)	ENSACIG00000014228	asic1b (ENSACIG00000014249)	ENSACIG00000014256	cela1.3 (ENSACIG00000014300) #22	gls2b (ENSACIG00000014748)	rdh5 (ENSACIG00000014791)	bloc1s1 (ENSACIG00000014831)	itcha (ENSACIG00000014885)	pxmp4 (ENSACIG00000015031)	tgm5l (ENSACIG00000015060)	eya2 (ENSACIG00000015079)	rtf2 (ENSACIG00000015119)	GCNT7 (ENSACIG00000015151)	tfap2c (ENSACIG00000015162)	CDH22 (ENSACIG00000015183)	ENSACIG00000015207	ZNFX1 (ENSACIG00000015220)	tbc1d20 (ENSACIG00000015263)	rbck1 (ENSACIG00000015287)
Atherinomorphae	ANCESTRAL SPECIES	2	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
Oryzias	DUPLICATION
Oryzias	DUPLICATION
Oryzias	ANCESTRAL SPECIES	1	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c
Japanese Medaka HdrR	MODERN SPECIES	19	manbal (ENSORLG00000023854)	SRC (ENSORLG00000006714)	APCDD1L (ENSORLG00000006724)	vapb (ENSORLG00000006745)	ENSORLG00000025533	ENSORLG00000023158	rab22a (ENSORLG00000026049)	ENSORLG00000006805	BCDIN3D (ENSORLG00000022941)	cers5 (ENSORLG00000006833)	COX14 (ENSORLG00000022328)	gpd1b (ENSORLG00000006847)	smarcd1 (ENSORLG00000006870)	ENSORLG00000006894	ENSORLG00000025997 #22	ENSORLG00000006922 #22	CELA1 (ENSORLG00000006967) #22	tnni1b (ENSORLG00000006990)	csrp1b (ENSORLG00000007008)	ENSORLG00000026873	NAV1 (ENSORLG00000007109)	mybphb (ENSORLG00000007135)	ENSORLG00000007159	ENSORLG00000022198	ENSORLG00000028532	ENSORLG00000007183	ENSORLG00000023973	ENSORLG00000007238	nudt3b (ENSORLG00000025270)	rps10 (ENSORLG00000007257)	pacsin1b (ENSORLG00000007282)
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c	ENSGT00940000157549.a
Indian medaka	MODERN SPECIES	8	ENSOMEG00000013609	manbal (ENSOMEG00000013578)	SRC (ENSOMEG00000013533)	APCDD1L (ENSOMEG00000013483)	vapb (ENSOMEG00000013470)	ENSOMEG00000000903	rab22a (ENSOMEG00000013425)	ENSOMEG00000013394	BCDIN3D (ENSOMEG00000013355)	COX14 (ENSOMEG00000013342)	cers5 (ENSOMEG00000013324)	gpd1b (ENSOMEG00000013286)	smarcd1 (ENSOMEG00000013234)	ENSOMEG00000013169	CELA1 (ENSOMEG00000013115) #22	ENSOMEG00000013096 #22	ENSOMEG00000013070 #22	tnni1b (ENSOMEG00000013028)	csrp1b (ENSOMEG00000013015)	NAV1 (ENSOMEG00000012980)	mybphb (ENSOMEG00000012906)	SYT2 (ENSOMEG00000012840)	ENSOMEG00000012734	ENSOMEG00000012697	ENSOMEG00000012547	ENSOMEG00000012442	GRM4 (ENSOMEG00000012281)	nudt3b (ENSOMEG00000012248)	rps10 (ENSOMEG00000012208)	pacsin1b (ENSOMEG00000012156)	SPDEF (ENSOMEG00000012084)
Javanese ricefish	MODERN SPECIES	19	cyp24a1 (ENSOJAG00000011279)	ENSOJAG00000011260	manbal (ENSOJAG00000011242)	SRC (ENSOJAG00000008989)	APCDD1L (ENSOJAG00000008729)	ENSOJAG00000008706	vapb (ENSOJAG00000008675)	rab22a (ENSOJAG00000008568)	ENSOJAG00000007735	BCDIN3D (ENSOJAG00000007676)	COX14 (ENSOJAG00000007667)	cers5 (ENSOJAG00000007621)	gpd1b (ENSOJAG00000007381)	smarcd1 (ENSOJAG00000005889)	ENSOJAG00000005398	ENSOJAG00000005330 #22	CELA1 (ENSOJAG00000005294) #22	tnni1b (ENSOJAG00000005222)	csrp1b (ENSOJAG00000005158)	NAV1 (ENSOJAG00000004821)	mybphb (ENSOJAG00000004676)	SYT2 (ENSOJAG00000004638)	ENSOJAG00000004626	ENSOJAG00000004389	ENSOJAG00000004319	igfn1.1 (ENSOJAG00000004216)	GRM4 (ENSOJAG00000003923)	nudt3b (ENSOJAG00000003847)	rps10 (ENSOJAG00000003802)	pacsin1b (ENSOJAG00000017834)	SPDEF (ENSOJAG00000017819)
Oryzias	ANCESTRAL SPECIES	1	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918
Oryzias_b	ANCESTRAL SPECIES	3	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918	ENSGT00950000182973.a.c.a.c
Indian medaka	MODERN SPECIES	8	cyp24a1 (ENSOMEG00000013649)	ENSOMEG00000013609	manbal (ENSOMEG00000013578)	SRC (ENSOMEG00000013533)	APCDD1L (ENSOMEG00000013483)	vapb (ENSOMEG00000013470)	ENSOMEG00000000903	rab22a (ENSOMEG00000013425)	ENSOMEG00000013394	BCDIN3D (ENSOMEG00000013355)	COX14 (ENSOMEG00000013342)	cers5 (ENSOMEG00000013324)	gpd1b (ENSOMEG00000013286)	smarcd1 (ENSOMEG00000013234)	ENSOMEG00000013169	CELA1 (ENSOMEG00000013115) #22	ENSOMEG00000013096 #22	ENSOMEG00000013070 #22	tnni1b (ENSOMEG00000013028)	csrp1b (ENSOMEG00000013015)	NAV1 (ENSOMEG00000012980)	mybphb (ENSOMEG00000012906)	SYT2 (ENSOMEG00000012840)	ENSOMEG00000012734	ENSOMEG00000012697	ENSOMEG00000012547	ENSOMEG00000012442	GRM4 (ENSOMEG00000012281)	nudt3b (ENSOMEG00000012248)	rps10 (ENSOMEG00000012208)	pacsin1b (ENSOMEG00000012156)
Oryzias_a	ANCESTRAL SPECIES	5	ENSGT00950000182932.C.a	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.q.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.q.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT01030000234588.a.a.b	ENSGT00940000156777.c	ENSGT01010000223242	ENSGT00940000156637.b	ENSGT00940000158040.d	ENSGT00940000157586.e	ENSGT00940000166065.a	ENSGT00940000160123.e.b.a.a.a	ENSGT00940000160123.e.b.a.b	ENSGT00940000160123.e.b.b	ENSGT01030000234648.a.b.a.a.a.f.b	ENSGT00940000157882	ENSGT00440000034918
Japanese Medaka HdrR	MODERN SPECIES	19	ENSORLG00000023353	manbal (ENSORLG00000023854)	SRC (ENSORLG00000006714)	APCDD1L (ENSORLG00000006724)	vapb (ENSORLG00000006745)	ENSORLG00000025533	ENSORLG00000023158	rab22a (ENSORLG00000026049)	ENSORLG00000006805	BCDIN3D (ENSORLG00000022941)	cers5 (ENSORLG00000006833)	COX14 (ENSORLG00000022328)	gpd1b (ENSORLG00000006847)	smarcd1 (ENSORLG00000006870)	ENSORLG00000006894	ENSORLG00000025997 #22	ENSORLG00000006922 #22	CELA1 (ENSORLG00000006967) #22	tnni1b (ENSORLG00000006990)	csrp1b (ENSORLG00000007008)	ENSORLG00000026873	NAV1 (ENSORLG00000007109)	mybphb (ENSORLG00000007135)	ENSORLG00000007159	ENSORLG00000022198	ENSORLG00000028532	ENSORLG00000007183	ENSORLG00000023973	ENSORLG00000007238	nudt3b (ENSORLG00000025270)	rps10 (ENSORLG00000007257)
Oryzias	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.c.b.r #22
Oryzias_a	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.c.b.r #22
Chinese medaka	MODERN SPECIES	3281																ENSOSIG00000001913 #22
Cyprinodontiformes	DUPLICATION
Cyprinodontiformes	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.c.b.s #22
Aplocheiloidei	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.c.b.s #22
Mangrove rivulus	MODERN SPECIES	11	manbal (ENSKMAG00000014809)	SRC (ENSKMAG00000014774)	APCDD1L (ENSKMAG00000014756)	ENSKMAG00000014747	vapb (ENSKMAG00000014728)	rab22a (ENSKMAG00000014705)	ENSKMAG00000014667	BCDIN3D (ENSKMAG00000014656)	COX14 (ENSKMAG00000014652)	ENSKMAG00000014641	cers5 (ENSKMAG00000014613)	gpd1b (ENSKMAG00000014583)	smarcd1 (ENSKMAG00000014527)	ENSKMAG00000014476	ENSKMAG00000014435 #22	ENSKMAG00000014411 #22	CELA1 (ENSKMAG00000014398) #22	gls2b (ENSKMAG00000014362)	bloc1s1 (ENSKMAG00000014318)	itcha (ENSKMAG00000014234)	pxmp4 (ENSKMAG00000014204)	tgm5l (ENSKMAG00000014174)	eya2 (ENSKMAG00000014120)	GCNT7 (ENSKMAG00000014094)	rtf2 (ENSKMAG00000014071)	tfap2c (ENSKMAG00000014011)	ENSKMAG00000013976	CDH22 (ENSKMAG00000013931)	ZNFX1 (ENSKMAG00000013898)	tbc1d20 (ENSKMAG00000013864)	rbck1 (ENSKMAG00000013826)
Cyprinodontiformes	DUPLICATION
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.t.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d.x.b	ENSGT00940000163895	ENSGT00940000159376
Aplocheiloidei	ANCESTRAL SPECIES	10	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d.x.b	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b
Mangrove rivulus	MODERN SPECIES	11	ENSKMAG00000014825	manbal (ENSKMAG00000014809)	SRC (ENSKMAG00000014774)	APCDD1L (ENSKMAG00000014756)	ENSKMAG00000014747	vapb (ENSKMAG00000014728)	rab22a (ENSKMAG00000014705)	ENSKMAG00000014667	BCDIN3D (ENSKMAG00000014656)	COX14 (ENSKMAG00000014652)	ENSKMAG00000014641	cers5 (ENSKMAG00000014613)	gpd1b (ENSKMAG00000014583)	smarcd1 (ENSKMAG00000014527)	ENSKMAG00000014476	ENSKMAG00000014435 #22	ENSKMAG00000014411 #22	CELA1 (ENSKMAG00000014398) #22	gls2b (ENSKMAG00000014362)	bloc1s1 (ENSKMAG00000014318)	itcha (ENSKMAG00000014234)	pxmp4 (ENSKMAG00000014204)	tgm5l (ENSKMAG00000014174)	eya2 (ENSKMAG00000014120)	GCNT7 (ENSKMAG00000014094)	rtf2 (ENSKMAG00000014071)	tfap2c (ENSKMAG00000014011)	ENSKMAG00000013976	CDH22 (ENSKMAG00000013931)	ZNFX1 (ENSKMAG00000013898)	tbc1d20 (ENSKMAG00000013864)
Turquoise killifish	MODERN SPECIES	1619	manbal (ENSNFUG00015018938)	SRC (ENSNFUG00015015352)	BX323459.1 (ENSNFUG00015015029)	VAPB (ENSNFUG00015014990)	RAB22A (ENSNFUG00015014978)	ENSNFUG00015013788	BCDIN3D (ENSNFUG00015013721)	COX14 (ENSNFUG00015013719)	cers5 (ENSNFUG00015013638)	gpd1b (ENSNFUG00015013578)	ENSNFUG00015013569	SMARCD1 (ENSNFUG00015011883)	ENSNFUG00015011752	ENSNFUG00015011154	ENSNFUG00015011053	ENSNFUG00015011034 #22	CELA1 (ENSNFUG00015011022) #22	gls2b (ENSNFUG00015010000)	rdh5 (ENSNFUG00015009940)	BLOC1S1 (ENSNFUG00015009921)	ITCH (ENSNFUG00015005831)	pxmp4 (ENSNFUG00015005510)	tgm5l (ENSNFUG00015005493)	eya2 (ENSNFUG00015005070)	ENSNFUG00015004996	ENSNFUG00015004990	GCNT7 (ENSNFUG00015004943)	RTFDC1 (ENSNFUG00015004915)	tfap2c (ENSNFUG00015004896)	ENSNFUG00015004888	CABZ01034923.1 (ENSNFUG00015004738)
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00390000006465	ENSGT00940000159380	ENSGT00950000182843.b	ENSGT00940000159618	ENSGT00940000160510	ENSGT00950000183080.a.b.b.a.a.f	ENSGT00950000183080.a.b.b.a.a.e	ENSGT00390000005590	ENSGT00940000155815.q	ENSGT00940000154756.A	ENSGT00390000014839.a	ENSGT00940000159126	ENSGT00940000160805	ENSGT00940000164727	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT00950000182846.a.a.b.a.a.f	ENSGT01100000263569.a.a	ENSGT00940000158974	ENSGT00940000154365.a.a	ENSGT00940000159586	ENSGT00390000015871	ENSGT00940000159905	ENSGT00950000183032.A.b.b.a	ENSGT00950000182863.B.a	ENSGT00940000154681.a.e	ENSGT00740000115534.a.b	ENSGT01050000244824.A	ENSGT00940000163032	ENSGT00390000014654	ENSGT00490000043329.a.a.b
Poeciliinae	ANCESTRAL SPECIES	96															ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT00950000182846.a.a.b.a.a.f
Poecilia	ANCESTRAL SPECIES	25	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009.h	ENSGT00940000157009.g	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT00950000182846.a.a.b.a.a.f	ENSGT00390000001912.f	ENSGT00390000000724.c.a	ENSGT00390000018016.i	ENSGT01050000244866.D.a.c.m.b.a	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.a.a.b	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT00940000165085	ENSGT00440000038003	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.a.b.a.a.a	ENSGT00530000064100
NAME_6	ANCESTRAL SPECIES	302															ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT00950000182846.a.a.b.a.a.f	ENSGT00390000001912.f	ENSGT00390000000724.c.a	ENSGT00390000018016.i	ENSGT01050000244866.D.a.c.m.b.a	ENSGT00390000004860	ENSGT00390000011897	ENSGT00940000157238.a	ENSGT00940000157444	ENSGT00940000159941	ENSGT00940000165085	ENSGT00440000038003	ENSGT00970000193381.a.a.a.a.a.a.a.c.a.a.b.b.a.b.a.a.a
Amazon molly	MODERN SPECIES	695															ENSPFOG00000001192	ENSPFOG00000001253 #22	dnase1l4.2 (ENSPFOG00000021969)	pck1 (ENSPFOG00000001405)	pmepa1 (ENSPFOG00000001516)	ENSPFOG00000001575	ENSPFOG00000001721	ENSPFOG00000001953	nol8 (ENSPFOG00000002057)	cenpp (ENSPFOG00000002269)	ogna (ENSPFOG00000002272)	aspn (ENSPFOG00000002322)	ECM2 (ENSPFOG00000002371)	ENSPFOG00000002436	ENSPFOG00000003077	ENSPFOG00000003265
Sailfin molly	MODERN SPECIES	863															ENSPLAG00000008462	ENSPLAG00000008447 #22	dnase1l4.2 (ENSPLAG00000008432)	pck1 (ENSPLAG00000008227)	pmepa1 (ENSPLAG00000008197)	ccndbp1 (ENSPLAG00000008150)	ENSPLAG00000008113
Guppy	MODERN SPECIES	457	manbal (ENSPREG00000011033)	SRC (ENSPREG00000011011)	APCDD1L (ENSPREG00000010987)	ENSPREG00000010967	vapb (ENSPREG00000010949)	rab22a (ENSPREG00000010920)	ENSPREG00000010898	ENSPREG00000010878	ENSPREG00000010857	BCDIN3D (ENSPREG00000010840)	ENSPREG00000010828	cers5 (ENSPREG00000010812)	gpd1b (ENSPREG00000010779)	smarcd1 (ENSPREG00000010747)	ENSPREG00000010688	ENSPREG00000010627 #22	ENSPREG00000010401	pck1 (ENSPREG00000010342)	pmepa1 (ENSPREG00000010321)	ccndbp1 (ENSPREG00000010299)	ENSPREG00000010203	ENSPREG00000010187	ENSPREG00000010175	ENSPREG00000010164	ogna (ENSPREG00000010150)	aspn (ENSPREG00000010071)	ECM2 (ENSPREG00000010041)	ENSPREG00000009864	ENSPREG00000009821	ENSPREG00000009808	ccndbp1 (ENSPREG00000009795)
Platyfish	DUPLICATION
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	12	ENSXMAG00000010231	manbal (ENSXMAG00000026032)	SRC (ENSXMAG00000010238)	APCDD1L (ENSXMAG00000027714)	ENSXMAG00000028607	vapb (ENSXMAG00000023217)	rab22a (ENSXMAG00000021095)	ENSXMAG00000010296	BCDIN3D (ENSXMAG00000029177)	ENSXMAG00000019873	cers5 (ENSXMAG00000010322)	gpd1b (ENSXMAG00000010379)	smarcd1 (ENSXMAG00000010389)	ENSXMAG00000022632	CELA1 (ENSXMAG00000022954) #22	ENSXMAG00000018065 #22	ENSXMAG00000019359 #22	pck1 (ENSXMAG00000010445)	pmepa1 (ENSXMAG00000010456)	ccndbp1 (ENSXMAG00000010458)	ENSXMAG00000027931	nol8 (ENSXMAG00000010471)	ENSXMAG00000029574	ENSXMAG00000027913	ogna (ENSXMAG00000010483)	aspn (ENSXMAG00000010485)	ECM2 (ENSXMAG00000010488)	ENSXMAG00000010481	ENSXMAG00000028031	ENSXMAG00000010495	ENSXMAG00000004155
Platyfish	MODERN SPECIES	12	cyp24a1 (ENSXMAG00000010218)	ENSXMAG00000010231	manbal (ENSXMAG00000026032)	SRC (ENSXMAG00000010238)	APCDD1L (ENSXMAG00000027714)	ENSXMAG00000028607	vapb (ENSXMAG00000023217)	rab22a (ENSXMAG00000021095)	ENSXMAG00000010296	BCDIN3D (ENSXMAG00000029177)	ENSXMAG00000019873	cers5 (ENSXMAG00000010322)	gpd1b (ENSXMAG00000010379)	smarcd1 (ENSXMAG00000010389)	ENSXMAG00000022632	CELA1 (ENSXMAG00000022954) #22	ENSXMAG00000018065 #22	ENSXMAG00000019359 #22	pck1 (ENSXMAG00000010445)	pmepa1 (ENSXMAG00000010456)	ccndbp1 (ENSXMAG00000010458)	ENSXMAG00000027931	nol8 (ENSXMAG00000010471)	ENSXMAG00000029574	ENSXMAG00000027913	ogna (ENSXMAG00000010483)	aspn (ENSXMAG00000010485)	ECM2 (ENSXMAG00000010488)	ENSXMAG00000010481	ENSXMAG00000028031	ENSXMAG00000010495
Platyfish	MODERN SPECIES	12	manbal (ENSXMAG00000026032)	SRC (ENSXMAG00000010238)	APCDD1L (ENSXMAG00000027714)	ENSXMAG00000028607	vapb (ENSXMAG00000023217)	rab22a (ENSXMAG00000021095)	ENSXMAG00000010296	BCDIN3D (ENSXMAG00000029177)	ENSXMAG00000019873	cers5 (ENSXMAG00000010322)	gpd1b (ENSXMAG00000010379)	smarcd1 (ENSXMAG00000010389)	ENSXMAG00000022632	CELA1 (ENSXMAG00000022954) #22	ENSXMAG00000018065 #22	ENSXMAG00000019359 #22	pck1 (ENSXMAG00000010445)	pmepa1 (ENSXMAG00000010456)	ccndbp1 (ENSXMAG00000010458)	ENSXMAG00000027931	nol8 (ENSXMAG00000010471)	ENSXMAG00000029574	ENSXMAG00000027913	ogna (ENSXMAG00000010483)	aspn (ENSXMAG00000010485)	ECM2 (ENSXMAG00000010488)	ENSXMAG00000010481	ENSXMAG00000028031	ENSXMAG00000010495	ENSXMAG00000004155	ENSXMAG00000027206
NAME_4	ANCESTRAL SPECIES	37	ENSGT00950000182905.b	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT00940000155769.`b.b	ENSGT01080000257445	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT00950000182846.a.a.b.a.a.f
Mummichog	MODERN SPECIES	536												ENSFHEG00000007754	gpd1b (ENSFHEG00000007744)	smarcd1 (ENSFHEG00000007708)	ENSFHEG00000007640	ENSFHEG00000007603 #22	dnase1l4.2 (ENSFHEG00000007595)
Sheepshead minnow	MODERN SPECIES	1445															ENSCVAG00000011655	ENSCVAG00000011678 #22	khk (ENSCVAG00000011716)	pltp (ENSCVAG00000011725)	ddx27 (ENSCVAG00000011736)	KCNQ2 (ENSCVAG00000011759)	ENSCVAG00000011769	ctsa (ENSCVAG00000000308)
Cyprinodontiformes	ANCESTRAL SPECIES	2	ENSGT00940000156230.o	ENSGT00390000003422	ENSGT00940000158250.d.a	ENSGT00640000091492.b	ENSGT01080000257445	ENSGT00940000155769.`b.b	ENSGT00940000157009	ENSGT00950000183066.a.b.a.b	ENSGT00940000153993.B	ENSGT00390000002190	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.c.b.t.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.t.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT01060000248530.C.d.x.b	ENSGT00940000163895	ENSGT00940000159376	ENSGT00940000155154.b
Cyprinodontoidei	ANCESTRAL SPECIES	4	ENSGT00940000161337.a.a.b.a.a.a.a.a.a	ENSGT00940000161337.a.a.b.a.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.b.i	ENSGT00940000161337.a.a.b.a.a.b.j	ENSGT00940000161337.a.a.a.a	ENSGT00940000161337.a.a.a.b	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.t.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b	ENSGT00940000160402	ENSGT00390000010923	ENSGT00950000182848.c.b.a.b	ENSGT00940000159376	ENSGT00940000155154.b	ENSGT00390000014944.a	ENSGT00940000166000
NAME_4	ANCESTRAL SPECIES	193	ENSGT00940000157086.b	ENSGT00940000161337.a.a.b.a.a.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.a.a.a.a	ENSGT00940000161337.a.a.b.a.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.a.b	ENSGT00940000161337.a.a.b.a.a.b.i	ENSGT00940000161337.a.a.a.a	ENSGT00940000160096	ENSGT00940000154984.B	ENSGT00940000165514	ENSGT00940000160129	ENSGT00720000109813	ENSGT00390000017740.a.b	ENSGT00940000153393.B	ENSGT00950000182846.a.a.b.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.t.b #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000157014.f	ENSGT00390000001562	ENSGT01050000244866.D.b.a	ENSGT00950000182978.A.a.b.b
Sheepshead minnow	MODERN SPECIES	1539																ENSCVAG00000017709 #22	CELA1 (ENSCVAG00000017716) #22	gls2b (ENSCVAG00000017770)	rdh5 (ENSCVAG00000017796)	bloc1s1 (ENSCVAG00000017816)	itcha (ENSCVAG00000017836)	pxmp4 (ENSCVAG00000017857)	tgm5l (ENSCVAG00000018042)	eya2 (ENSCVAG00000018151)
Mummichog	MODERN SPECIES	345											ENSFHEG00000016192	cand2 (ENSFHEG00000016177)	sec13 (ENSFHEG00000016019)	ENSFHEG00000015987	dnase1l4.2 (ENSFHEG00000015902)	ENSFHEG00000015888 #22	CELA1 (ENSFHEG00000015859) #22	gls2b (ENSFHEG00000015848)	rdh5 (ENSFHEG00000015812)	bloc1s1 (ENSFHEG00000015756)	itcha (ENSFHEG00000015750)	pxmp4 (ENSFHEG00000015705)	tgm5l (ENSFHEG00000015688)	eya2 (ENSFHEG00000015629)	rtf2 (ENSFHEG00000015617)	GCNT7 (ENSFHEG00000015580)	tfap2c (ENSFHEG00000015575)	bves (ENSFHEG00000015556)
Pinecone sodierfish	MODERN SPECIES	19	cyp24a1 (ENSMMDG00005022246)	ENSMMDG00005022238	manbal (ENSMMDG00005022232)	SRC (ENSMMDG00005022229)	APCDD1L (ENSMMDG00005022227)	ENSMMDG00005022225	vapb (ENSMMDG00005022224)	rab22a (ENSMMDG00005022213)	ENSMMDG00005021071	BCDIN3D (ENSMMDG00005021043)	COX14 (ENSMMDG00005021042)	cers5 (ENSMMDG00005021040)	gpd1b (ENSMMDG00005021038)	smarcd1 (ENSMMDG00005019577)	ENSMMDG00005019524	CELA1 (ENSMMDG00005019520) #22	ENSMMDG00005019464 #22	gls2b (ENSMMDG00005018696)	rdh5 (ENSMMDG00005018423)	bloc1s1 (ENSMMDG00005018410)	itcha (ENSMMDG00005013833)	pxmp4 (ENSMMDG00005013778)	tgm5l (ENSMMDG00005013776)	eya2 (ENSMMDG00005013773)	GCNT7 (ENSMMDG00005013771)	rtf2 (ENSMMDG00005013770)	tfap2c (ENSMMDG00005013769)	CDH22 (ENSMMDG00005013765)	ZNFX1 (ENSMMDG00005012991)	tbc1d20 (ENSMMDG00005012970)	rbck1 (ENSMMDG00005012968)
Protacanthopterygii	ANCESTRAL SPECIES	98	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.b	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260174.d	ENSGT01030000234515.a.a.a.k	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000155331.B	ENSGT00390000016619.b	ENSGT00940000155224.c.a	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd.a.a	ENSGT00970000198185	ENSGT00940000160885
Salmoninae	DUPLICATION
Salmoninae	DUPLICATION
Salmoninae	ANCESTRAL SPECIES	101	ENSGT00940000159006.c.a.b	ENSGT00390000010265.c.b	ENSGT00390000010265.d	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a.f	ENSGT00390000016619.b	ENSGT00940000155331.B.a	ENSGT00940000160712	ENSGT00940000161232	ENSGT00390000015021	ENSGT00940000159891.d	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT00940000168601.c.b	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e	ENSGT00730000111323.f	ENSGT00490000043388.b.a.o	ENSGT00940000154583.e.b.b.a.b	ENSGT00940000155615.i.a.b	ENSGT00940000153393.B.h	ENSGT00390000017740.a.b
Huchen	MODERN SPECIES	4305														gls2b (ENSHHUG00000049164)	ENSHHUG00000049223 #22	CELA1 (ENSHHUG00000049228) #22
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00970000198185	ENSGT00940000154129.gd.a.b	ENSGT00940000159006.c.a.b	ENSGT00390000010265.d	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a.f	ENSGT00390000016619.b	ENSGT00940000155331.B.a	ENSGT00940000161232.l	ENSGT00390000015021	ENSGT00940000159891.d	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000176379.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e	ENSGT00730000111323.f	ENSGT00490000043388.b.a.o	ENSGT00390000013951	ENSGT00940000154583.e.b.b.a.a
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00940000154129.gd.a.b	ENSGT00940000159006.c.a.b	ENSGT00390000010265.c.b	ENSGT00390000010265.c.a	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a.f	ENSGT00390000016619.b	ENSGT00940000155331.B.a	ENSGT00940000161232.l	ENSGT00390000015021	ENSGT00940000159891.d	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000176379.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e.a	ENSGT00730000111323.f	ENSGT00490000043388.b.a.o	ENSGT00950000184126	ENSGT00940000153393.B.h
Oncorhynchus_a	ANCESTRAL SPECIES	54	ENSGT00970000198185	ENSGT00940000154129.gd.a.b	ENSGT00940000159006.c.a.b	ENSGT00390000010265.c.b	ENSGT00390000010265.c.a	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a.f	ENSGT00390000016619.b	ENSGT00940000155331.B.a	ENSGT01090000262700	ENSGT00390000015021	ENSGT00940000159891.d	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT00940000169926.a	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e.a	ENSGT00730000111323.f	ENSGT00490000043388.b.a.o	ENSGT00950000184126	ENSGT00940000153393.B.h	ENSGT00390000017740.a.b
Coho salmon	MODERN SPECIES		ENSOKIG00005022303	ENSOKIG00005022297	ENSOKIG00005022290	myg1 (ENSOKIG00005022280)	ENSOKIG00005022277	COL2A1 (ENSOKIG00005022243)	nckap1l (ENSOKIG00005019777)	ENSOKIG00005019653	ENSOKIG00005019369	ENSOKIG00005019343	npffl (ENSOKIG00005019299)	ITGA7 (ENSOKIG00005019140)	ENSOKIG00005019100	GLS2 (ENSOKIG00005018748)	ENSOKIG00005018711 #22	CELA1 (ENSOKIG00005018672) #22	ENSOKIG00005018138	ENSOKIG00005018130	ENSOKIG00005018122	ENSOKIG00005017949	smarcd1 (ENSOKIG00005017726)	ENSOKIG00005017692	ENSOKIG00005017656	dnase1l4.2 (ENSOKIG00005017638)	gpd1b (ENSOKIG00005017558)	ENSOKIG00005017534	MCM2 (ENSOKIG00005017128)	ENSOKIG00005017105	ENSOKIG00005017098	zgc:171566 (ENSOKIG00005017086)	ENSOKIG00005017059
Chinook salmon	MODERN SPECIES	11	dnase1l4.2 (ENSOTSG00005004183)	ccdc51 (ENSOTSG00005004176)	mcm2 (ENSOTSG00005003900)	zgc:171566 (ENSOTSG00005003894)	LSM3 (ENSOTSG00005003892)	ENSOTSG00005003890	rpl32 (ENSOTSG00005003887)	cand2 (ENSOTSG00005002395)	sec13 (ENSOTSG00005002355)	igsf8 (ENSOTSG00005002347)	ENSOTSG00005002341	ENSOTSG00005002316	ENSOTSG00005002310	gls2b (ENSOTSG00005002305)	CELA1 (ENSOTSG00005001148) #22	CELA1 (ENSOTSG00005001112) #22	ENSOTSG00005001106	ENSOTSG00005001103	ENSOTSG00005001093	ENSOTSG00005001086	NXPH4 (ENSOTSG00005001081)	shmt2 (ENSOTSG00005000876)	NDUFA4L2 (ENSOTSG00005000738)	ENSOTSG00005000401	ENSOTSG00005000127	ENSOTSG00005007983	slc32a1 (ENSOTSG00005007982)	aurka (ENSOTSG00005007980)	prelid3b (ENSOTSG00005007979)	ENSOTSG00005007978	ddx19b (ENSOTSG00005005106)
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000071560	ENSOMYG00000030136	ENSOMYG00000048522	ENSOMYG00000029943	ENSOMYG00000050357	ENSOMYG00000047065	ENSOMYG00000029605	ENSOMYG00000029370	ENSOMYG00000063844	ENSOMYG00000029311	ITGA7 (ENSOMYG00000070698)	bloc1s1 (ENSOMYG00000029265)	RDH5 (ENSOMYG00000061136)	gls2b (ENSOMYG00000029215)	ENSOMYG00000060523 #22	ENSOMYG00000029112 #22	ENSOMYG00000056096	ENSOMYG00000049787	ENSOMYG00000049086	asic1b (ENSOMYG00000032449)	smarcd1 (ENSOMYG00000032432)	gpd1b (ENSOMYG00000032387)	cers5 (ENSOMYG00000075255)	ENSOMYG00000027870	ENSOMYG00000072396	dnsl3 (ENSOMYG00000032287)	ENSOMYG00000032261	ccdc51 (ENSOMYG00000032259)	mcm2 (ENSOMYG00000031800)	ENSOMYG00000031634	zgc:171566 (ENSOMYG00000031594)
Salmo	ANCESTRAL SPECIES	33	ENSGT00970000198185	ENSGT00940000154129.gd.a.b	ENSGT00940000159006.c.a.b	ENSGT00390000010265.d	ENSGT00940000154360.A.a	ENSGT00940000155224.c.a.f	ENSGT00390000016619.b	ENSGT00940000155331.B.a	ENSGT00940000161232.l	ENSGT00390000015021	ENSGT00940000159891.d	ENSGT00390000002689.g	ENSGT00940000161168.i	ENSGT00390000010463.a.a.a.a.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT00940000165535.e	ENSGT00940000164727.db.a	ENSGT00940000156629.a.b	ENSGT00390000003114.e.a.b	ENSGT01030000234515.a.a.a.k.d	ENSGT01090000260174.c	ENSGT00940000161090.B.c.b.b.a.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000176379.a	ENSGT00940000164287.f	ENSGT01050000244824.F.e	ENSGT00730000111323.f	ENSGT00490000043388.b.a.o	ENSGT00390000013951	ENSGT00940000154583.e.b.b.a.b
Atlantic salmon	MODERN SPECIES	3	MAP3K12 (ENSSSAG00000004308)	ENSSSAG00000004165	ENSSSAG00000110532	ENSSSAG00000064261	ENSSSAG00000063960	ENSSSAG00000089742	ENSSSAG00000059561	npff (ENSSSAG00000059544)	ITGA7 (ENSSSAG00000058863)	bloc1s1 (ENSSSAG00000058802)	RDH5 (ENSSSAG00000058768)	gls2b (ENSSSAG00000055116)	ENSSSAG00000087837	ENSSSAG00000055002 #22	ENSSSAG00000055016 #22	ENSSSAG00000120768 #22	ENSSSAG00000087361	asic1b (ENSSSAG00000047167)	smarcd1 (ENSSSAG00000043397)	gpd1b (ENSSSAG00000043162)	cers5 (ENSSSAG00000067468)	CL062 (ENSSSAG00000043016)	ENSSSAG00000108536	dnase1l4.2 (ENSSSAG00000042975)	ccdc51 (ENSSSAG00000082299)	ENSSSAG00000108862	MCM2 (ENSSSAG00000042717)	ENSSSAG00000042697	zgc:171566 (ENSSSAG00000042676)	ENSSSAG00000042655	ENSSSAG00000039620
River trout	MODERN SPECIES	5	PCBP2 (ENSSTUG00000005298)	MAP3K12 (ENSSTUG00000005231)	myg1 (ENSSTUG00000005219)	ENSSTUG00000005207	COL2A1 (ENSSTUG00000005142)	nckap1l (ENSSTUG00000003769)	ENSSTUG00000017564	ENSSTUG00000017520	npffl (ENSSTUG00000017512)	ITGA7 (ENSSTUG00000017362)	bloc1s1 (ENSSTUG00000017326)	rdh5 (ENSSTUG00000017306)	ENSSTUG00000017292	gls2b (ENSSTUG00000016763)	ENSSTUG00000016735 #22	CELA1 (ENSSTUG00000016694) #22	ENSSTUG00000016682	ENSSTUG00000016678	asic1b (ENSSTUG00000016407)	smarcd1 (ENSSTUG00000016029)	gpd1b (ENSSTUG00000015795)	cers5 (ENSSTUG00000015768)	ENSSTUG00000015759	ENSSTUG00000015745	dnase1l4.2 (ENSSTUG00000015701)	ENSSTUG00000015674	ENSSTUG00000015665	ccdc51 (ENSSTUG00000015661)	mcm2 (ENSSTUG00000015273)	ENSSTUG00000015217	zgc:171566 (ENSSTUG00000015204)
Salmoninae	ANCESTRAL SPECIES	101	ENSGT00940000153393.B.h	ENSGT00940000155615.i.a.b	ENSGT00940000154583.e.b.b.a.b	ENSGT00490000043388.b.a.o	ENSGT00730000111323.f	ENSGT01050000244824.F.e	ENSGT00940000164287.f	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a.a	ENSGT01090000260174.c	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000168601.c.b	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f	ENSGT00940000154360.A.a	ENSGT00390000010265.d	ENSGT00390000010265.c.b	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.b
Huchen	MODERN SPECIES	4305															CELA1 (ENSHHUG00000049228) #22	ENSHHUG00000049223 #22	gls2b (ENSHHUG00000049164)
Salmoninae_a	ANCESTRAL SPECIES	29	ENSGT00390000013951	ENSGT00490000043388.b.a.o	ENSGT00730000111323.f	ENSGT01050000244824.F.e	ENSGT00940000164287.f	ENSGT00940000176379.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a.a	ENSGT01090000260174.c	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232.l	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f	ENSGT00940000154360.A.a	ENSGT00390000010265.d	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185	ENSGT00940000160885
Oncorhynchus	ANCESTRAL SPECIES	1	ENSGT00950000184126	ENSGT00490000043388.b.a.o	ENSGT00730000111323.f	ENSGT01050000244824.F.e.a	ENSGT00940000164287.f	ENSGT00940000176379.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a.a	ENSGT01090000260174.c	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232.l	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f	ENSGT00940000154360.A.a	ENSGT00390000010265.c.a	ENSGT00390000010265.c.b	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185
Rainbow trout	MODERN SPECIES	8	ENSOMYG00000031634	mcm2 (ENSOMYG00000031800)	ccdc51 (ENSOMYG00000032259)	ENSOMYG00000032261	dnsl3 (ENSOMYG00000032287)	ENSOMYG00000072396	ENSOMYG00000027870	cers5 (ENSOMYG00000075255)	gpd1b (ENSOMYG00000032387)	smarcd1 (ENSOMYG00000032432)	asic1b (ENSOMYG00000032449)	ENSOMYG00000049086	ENSOMYG00000049787	ENSOMYG00000056096	ENSOMYG00000029112 #22	ENSOMYG00000060523 #22	gls2b (ENSOMYG00000029215)	RDH5 (ENSOMYG00000061136)	bloc1s1 (ENSOMYG00000029265)	ITGA7 (ENSOMYG00000070698)	ENSOMYG00000029311	ENSOMYG00000063844	ENSOMYG00000029370	ENSOMYG00000029605	ENSOMYG00000047065	ENSOMYG00000050357	ENSOMYG00000029943	ENSOMYG00000048522	ENSOMYG00000030136	ENSOMYG00000071560	ENSOMYG00000075519
Oncorhynchus_a	ANCESTRAL SPECIES	54	ENSGT00940000153393.B.h	ENSGT00950000184126	ENSGT00490000043388.b.a.o	ENSGT00730000111323.f	ENSGT01050000244824.F.e.a	ENSGT00940000164287.f	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a.a	ENSGT01090000260174.c	ENSGT00940000169926.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT01090000262700	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f	ENSGT00940000154360.A.a	ENSGT00390000010265.c.a	ENSGT00390000010265.c.b	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185	ENSGT00940000160885
Coho salmon	MODERN SPECIES		zgc:171566 (ENSOKIG00005017086)	ENSOKIG00005017098	ENSOKIG00005017105	MCM2 (ENSOKIG00005017128)	ENSOKIG00005017534	gpd1b (ENSOKIG00005017558)	dnase1l4.2 (ENSOKIG00005017638)	ENSOKIG00005017656	ENSOKIG00005017692	smarcd1 (ENSOKIG00005017726)	ENSOKIG00005017949	ENSOKIG00005018122	ENSOKIG00005018130	ENSOKIG00005018138	CELA1 (ENSOKIG00005018672) #22	ENSOKIG00005018711 #22	GLS2 (ENSOKIG00005018748)	ENSOKIG00005019100	ITGA7 (ENSOKIG00005019140)	npffl (ENSOKIG00005019299)	ENSOKIG00005019343	ENSOKIG00005019369	ENSOKIG00005019653	nckap1l (ENSOKIG00005019777)	COL2A1 (ENSOKIG00005022243)	ENSOKIG00005022277	myg1 (ENSOKIG00005022280)	ENSOKIG00005022290	ENSOKIG00005022297	ENSOKIG00005022303	MAP3K12 (ENSOKIG00005022361)
Chinook salmon	MODERN SPECIES	11	ENSOTSG00005007978	prelid3b (ENSOTSG00005007979)	aurka (ENSOTSG00005007980)	slc32a1 (ENSOTSG00005007982)	ENSOTSG00005007983	ENSOTSG00005000127	ENSOTSG00005000401	NDUFA4L2 (ENSOTSG00005000738)	shmt2 (ENSOTSG00005000876)	NXPH4 (ENSOTSG00005001081)	ENSOTSG00005001086	ENSOTSG00005001093	ENSOTSG00005001103	ENSOTSG00005001106	CELA1 (ENSOTSG00005001112) #22	CELA1 (ENSOTSG00005001148) #22	gls2b (ENSOTSG00005002305)	ENSOTSG00005002310	ENSOTSG00005002316	ENSOTSG00005002341	igsf8 (ENSOTSG00005002347)	sec13 (ENSOTSG00005002355)	cand2 (ENSOTSG00005002395)	rpl32 (ENSOTSG00005003887)	ENSOTSG00005003890	LSM3 (ENSOTSG00005003892)	zgc:171566 (ENSOTSG00005003894)	mcm2 (ENSOTSG00005003900)	ccdc51 (ENSOTSG00005004176)	dnase1l4.2 (ENSOTSG00005004183)	ENSOTSG00005004188
Salmo	ANCESTRAL SPECIES	33	ENSGT00390000013951	ENSGT00490000043388.b.a.o	ENSGT00730000111323.f	ENSGT01050000244824.F.e	ENSGT00940000164287.f	ENSGT00940000176379.a	ENSGT00950000182846.a.a.b.a	ENSGT00940000161090.B.c.b.b.a.a	ENSGT01090000260174.c	ENSGT01030000234515.a.a.a.k.d	ENSGT00390000003114.e.a.b	ENSGT00940000156629.a.b	ENSGT00940000164727.db.a	ENSGT00940000165535.e	ENSGT01030000234528.B.b.a.a.a.c.b.u.a #22	ENSGT01030000234528.B.b.a.a.a.c.b.u.b #22	ENSGT00390000010463.a.a.a.a.e	ENSGT00940000161168.i	ENSGT00390000002689.g	ENSGT00940000159891.d	ENSGT00390000015021	ENSGT00940000161232.l	ENSGT00940000155331.B.a	ENSGT00390000016619.b	ENSGT00940000155224.c.a.f	ENSGT00940000154360.A.a	ENSGT00390000010265.d	ENSGT00940000159006.c.a.b	ENSGT00940000154129.gd.a.b	ENSGT00970000198185	ENSGT00940000160885
River trout	MODERN SPECIES	5	ENSSTUG00000015217	mcm2 (ENSSTUG00000015273)	ccdc51 (ENSSTUG00000015661)	ENSSTUG00000015665	ENSSTUG00000015674	dnase1l4.2 (ENSSTUG00000015701)	ENSSTUG00000015745	ENSSTUG00000015759	cers5 (ENSSTUG00000015768)	gpd1b (ENSSTUG00000015795)	smarcd1 (ENSSTUG00000016029)	asic1b (ENSSTUG00000016407)	ENSSTUG00000016678	ENSSTUG00000016682	CELA1 (ENSSTUG00000016694) #22	ENSSTUG00000016735 #22	gls2b (ENSSTUG00000016763)	ENSSTUG00000017292	rdh5 (ENSSTUG00000017306)	bloc1s1 (ENSSTUG00000017326)	ITGA7 (ENSSTUG00000017362)	npffl (ENSSTUG00000017512)	ENSSTUG00000017520	ENSSTUG00000017564	nckap1l (ENSSTUG00000003769)	COL2A1 (ENSSTUG00000005142)	ENSSTUG00000005207	myg1 (ENSSTUG00000005219)	MAP3K12 (ENSSTUG00000005231)	PCBP2 (ENSSTUG00000005298)	ENSSTUG00000005467
Atlantic salmon	MODERN SPECIES	3	ENSSSAG00000042655	zgc:171566 (ENSSSAG00000042676)	ENSSSAG00000042697	MCM2 (ENSSSAG00000042717)	ENSSSAG00000108862	ccdc51 (ENSSSAG00000082299)	dnase1l4.2 (ENSSSAG00000042975)	ENSSSAG00000108536	CL062 (ENSSSAG00000043016)	cers5 (ENSSSAG00000067468)	gpd1b (ENSSSAG00000043162)	smarcd1 (ENSSSAG00000043397)	asic1b (ENSSSAG00000047167)	ENSSSAG00000087361	ENSSSAG00000120768 #22	ENSSSAG00000055016 #22	ENSSSAG00000055002 #22	ENSSSAG00000087837	gls2b (ENSSSAG00000055116)	RDH5 (ENSSSAG00000058768)	bloc1s1 (ENSSSAG00000058802)	ITGA7 (ENSSSAG00000058863)	npff (ENSSSAG00000059544)	ENSSSAG00000059561	ENSSSAG00000089742	ENSSSAG00000063960	ENSSSAG00000064261	ENSSSAG00000110532	ENSSSAG00000004165	MAP3K12 (ENSSSAG00000004308)	PCBP2 (ENSSSAG00000005732)
Salmoninae	ANCESTRAL SPECIES	937														ENSGT00940000164727.db	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a.c.b.v #22	ENSGT00390000010463.a.a.a.a.f	ENSGT00940000161168.j	ENSGT00390000002689.h	ENSGT00940000159891.c
Salmoninae_a	ANCESTRAL SPECIES	152			ENSGT00490000043388.b.a.p	ENSGT00730000111323.e	ENSGT01050000244824.F.f	ENSGT00940000164287.e	ENSGT00940000168313	ENSGT00950000182846.a.a.b.b	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174.d	ENSGT01030000234515.a.a.a.k.c	ENSGT00940000156629.a.a	ENSGT00940000168601.c.a.b	ENSGT00940000165535.d	ENSGT01030000234528.B.b.a.a.a.c.b.v #22	ENSGT00390000010463.a.a.a.a.f	ENSGT00940000161168.j	ENSGT00390000002689.h	ENSGT00940000159891.c	ENSGT00940000161232.k	ENSGT00940000160712	ENSGT00940000155331.B.b	ENSGT00940000155224.c.a.e
Salmo	ANCESTRAL SPECIES	61	ENSGT00940000155615.i.a.a	ENSGT00940000154583.e.b.b.a.a	ENSGT00490000043388.b.a.p	ENSGT00730000111323.e	ENSGT01050000244824.F.f	ENSGT00940000164287.e	ENSGT00940000176379.b	ENSGT00950000182846.a.a.b.b	ENSGT00940000161090.B.c.b.b.a.b	ENSGT00940000153993.B	ENSGT01090000260174.d	ENSGT01030000234515.a.a.a.k.c	ENSGT00940000156629.a.a	ENSGT00940000168601.d	ENSGT00940000165535.d	ENSGT01030000234528.B.b.a.a.a.c.b.v #22	ENSGT00390000010463.a.a.a.a.f	ENSGT00940000161168.j	ENSGT00390000002689.h	ENSGT00940000159891.c	ENSGT00940000161232.k	ENSGT00940000155331.B.b	ENSGT00940000155224.c.a.e	ENSGT00390000015137	ENSGT00950000183066.a.b.a.b.l	ENSGT00940000157009.c.b	ENSGT00940000155769.`b.b.c	ENSGT01090000260250.a	ENSGT01090000260750.a	ENSGT00640000091492.b.b	ENSGT01030000235711
River trout	MODERN SPECIES	7	mcm2 (ENSSTUG00000017472)	ccdc51 (ENSSTUG00000017580)	ENSSTUG00000017584	dnase1l4.1 (ENSSTUG00000017592)	dnase1l4.1 (ENSSTUG00000017594)	ENSSTUG00000017602	BCDIN3D (ENSSTUG00000017749)	cers5 (ENSSTUG00000017612)	ENSSTUG00000017751	smarcd1 (ENSSTUG00000017777)	ENSSTUG00000018086	ENSSTUG00000018177	ENSSTUG00000018181	ENSSTUG00000018188	ENSSTUG00000018192	ENSSTUG00000018204 #22	gls2b (ENSSTUG00000018235)	rdh5 (ENSSTUG00000018698)	bloc1s1 (ENSSTUG00000018718)	ITGA7 (ENSSTUG00000018756)	ENSSTUG00000019121	ENSSTUG00000019135	ENSSTUG00000019223	COL2A1 (ENSSTUG00000021109)	ENSSTUG00000024893	ENSSTUG00000024897	ENSSTUG00000024931	ENSSTUG00000024953	ENSSTUG00000025083	ANKRD60 (ENSSTUG00000025574)	ENSSTUG00000025595
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	16	COL2A1 (ENSELUG00000034350)	nckap1l (ENSELUG00000015487)	ENSELUG00000026207	ENSELUG00000000573	ENSELUG00000015549	npffl (ENSELUG00000000577)	ENSELUG00000015610	BCDIN3D (ENSELUG00000015623)	ENSELUG00000015633	cers5 (ENSELUG00000015654)	gpd1b (ENSELUG00000015681)	smarcd1 (ENSELUG00000015713)	ENSELUG00000015755	ENSELUG00000015913 #22	CELA1 (ENSELUG00000016072) #22	CELA1 (ENSELUG00000016032) #22	RGS9BP (ENSELUG00000016085)	zdhhc7 (ENSELUG00000028191)	ENSELUG00000016115	nip7 (ENSELUG00000016139)	cog8 (ENSELUG00000016162)	NOB1 (ENSELUG00000016199)	WDR59 (ENSELUG00000016242)	glg1b (ENSELUG00000016335)	PDPR (ENSELUG00000016394)	mrps11 (ENSELUG00000016452)	mrpl46 (ENSELUG00000016469)	ENSELUG00000016487	NTRK3 (ENSELUG00000016689)	ENSELUG00000016769	ENSELUG00000032446
Northern pike	MODERN SPECIES	16	NTRK3 (ENSELUG00000016689)	ENSELUG00000016487	mrpl46 (ENSELUG00000016469)	mrps11 (ENSELUG00000016452)	PDPR (ENSELUG00000016394)	glg1b (ENSELUG00000016335)	WDR59 (ENSELUG00000016242)	NOB1 (ENSELUG00000016199)	cog8 (ENSELUG00000016162)	nip7 (ENSELUG00000016139)	ENSELUG00000016115	zdhhc7 (ENSELUG00000028191)	RGS9BP (ENSELUG00000016085)	CELA1 (ENSELUG00000016032) #22	CELA1 (ENSELUG00000016072) #22	ENSELUG00000015913 #22	ENSELUG00000015755	smarcd1 (ENSELUG00000015713)	gpd1b (ENSELUG00000015681)	cers5 (ENSELUG00000015654)	ENSELUG00000015633	BCDIN3D (ENSELUG00000015623)	ENSELUG00000015610	npffl (ENSELUG00000000577)	ENSELUG00000015549	ENSELUG00000000573	ENSELUG00000026207	nckap1l (ENSELUG00000015487)	COL2A1 (ENSELUG00000034350)	ENSELUG00000026579	ENSELUG00000015439
Northern pike	MODERN SPECIES	16	ENSELUG00000026579	COL2A1 (ENSELUG00000034350)	nckap1l (ENSELUG00000015487)	ENSELUG00000026207	ENSELUG00000000573	ENSELUG00000015549	npffl (ENSELUG00000000577)	ENSELUG00000015610	BCDIN3D (ENSELUG00000015623)	ENSELUG00000015633	cers5 (ENSELUG00000015654)	gpd1b (ENSELUG00000015681)	smarcd1 (ENSELUG00000015713)	ENSELUG00000015755	ENSELUG00000015913 #22	CELA1 (ENSELUG00000016072) #22	CELA1 (ENSELUG00000016032) #22	RGS9BP (ENSELUG00000016085)	zdhhc7 (ENSELUG00000028191)	ENSELUG00000016115	nip7 (ENSELUG00000016139)	cog8 (ENSELUG00000016162)	NOB1 (ENSELUG00000016199)	WDR59 (ENSELUG00000016242)	glg1b (ENSELUG00000016335)	PDPR (ENSELUG00000016394)	mrps11 (ENSELUG00000016452)	mrpl46 (ENSELUG00000016469)	ENSELUG00000016487	NTRK3 (ENSELUG00000016689)	ENSELUG00000016769
Northern pike	DUPLICATION
Northern pike	MODERN SPECIES	59															ENSELUG00000030930	ENSELUG00000012098 #22
Northern pike	MODERN SPECIES	82																ENSELUG00000001283 #22
Clupeocephala	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Euteleosteomorpha	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Protacanthopterygii	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Salmoninae	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Salmoninae_a	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Salmo	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Atlantic salmon	MODERN SPECIES	3	zgc:171566 (ENSSSAG00000042676)	ENSSSAG00000042697	MCM2 (ENSSSAG00000042717)	ENSSSAG00000108862	ccdc51 (ENSSSAG00000082299)	dnase1l4.2 (ENSSSAG00000042975)	ENSSSAG00000108536	CL062 (ENSSSAG00000043016)	cers5 (ENSSSAG00000067468)	gpd1b (ENSSSAG00000043162)	smarcd1 (ENSSSAG00000043397)	asic1b (ENSSSAG00000047167)	ENSSSAG00000087361	ENSSSAG00000120768 #22	ENSSSAG00000055016 #22	ENSSSAG00000055002 #22	ENSSSAG00000087837	gls2b (ENSSSAG00000055116)	RDH5 (ENSSSAG00000058768)	bloc1s1 (ENSSSAG00000058802)	ITGA7 (ENSSSAG00000058863)	npff (ENSSSAG00000059544)	ENSSSAG00000059561	ENSSSAG00000089742	ENSSSAG00000063960	ENSSSAG00000064261	ENSSSAG00000110532	ENSSSAG00000004165	MAP3K12 (ENSSSAG00000004308)	PCBP2 (ENSSSAG00000005732)	ENSSSAG00000086826
Acanthomorphata	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Percomorphaceae_B	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Percomorphaceae_C	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Percomorphaceae_D	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Anabantaria	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Zig-zag eel	MODERN SPECIES	19	ENSMAMG00000008450	ENSMAMG00000008435	ENSMAMG00000008423	ENSMAMG00000008384	tfap2c (ENSMAMG00000008361)	ENSMAMG00000024278	rtf2 (ENSMAMG00000008340)	eya2 (ENSMAMG00000008321)	ENSMAMG00000008301	ENSMAMG00000025163	ENSMAMG00000008269	ENSMAMG00000008254	ENSMAMG00000027940	ENSMAMG00000008170 #22	ENSMAMG00000028635 #22	ENSMAMG00000026805 #22	ENSMAMG00000008118 #22	ENSMAMG00000024553 #22	ENSMAMG00000008059 #22	ENSMAMG00000027645 #22	ENSMAMG00000008036 #22	ENSMAMG00000008019 #22	ENSMAMG00000007965	ENSMAMG00000007907	gpd1b (ENSMAMG00000006180)	ENSMAMG00000006138	ENSMAMG00000006102	ENSMAMG00000006073	rab22a (ENSMAMG00000006024)	ENSMAMG00000006008	vapb (ENSMAMG00000027105)
Carangaria	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Carangaria_A	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Seriola	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d #22
Greater amberjack	MODERN SPECIES	391									rnf150a (ENSSDUG00000006699)	ENSSDUG00000006723	TBC1D9 (ENSSDUG00000006790)	ucp1 (ENSSDUG00000006854)	elmod2 (ENSSDUG00000006873)	ENSSDUG00000006910	zgc:154142 (ENSSDUG00000006919) ##22	ENSSDUG00000007026 #22	FAM13A (ENSSDUG00000007740)	herc3 (ENSSDUG00000007794)	ppm1kb (ENSSDUG00000007874)	abcg2d (ENSSDUG00000007902)	pkd2 (ENSSDUG00000007941)	g3bp2a (ENSSDUG00000008013)	uso1 (ENSSDUG00000008097)	coro2aa (ENSSDUG00000008243)	anp32b (ENSSDUG00000008282)	trmo (ENSSDUG00000008290)	ENSSDUG00000008304	sh3gl2a (ENSSDUG00000008361)	ENSSDUG00000008392
Otomorpha	ANCESTRAL SPECIES	29	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.a.c	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689
Otophysi	ANCESTRAL SPECIES	2	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000166028	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227
Characiphysae	ANCESTRAL SPECIES	5	ENSGT00940000154583.e.a	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.a.c	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT01030000234528.B.b.a.a.a.d #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227
Characiphysae_b	DUPLICATION
Characiphysae_b	ANCESTRAL SPECIES	8	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000168313	ENSGT00950000182846.a.a.b.a.c	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d.a #22	ENSGT01030000234528.B.b.a.a.a.c.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227
Characoidei	DUPLICATION
Characoidei	ANCESTRAL SPECIES	38																ENSGT01030000234528.B.b.a.a.a.d.a.a #22	ENSGT01030000234528.B.b.a.a.a.d.a.b #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227
Mexicana tetra	MODERN SPECIES	1212																CELA1 (ENSAMXG00000014110) #22	ENSAMXG00000035756	ENSAMXG00000040394 #22	gls2b (ENSAMXG00000004802)	rdh5 (ENSAMXG00000038946)	bloc1s1 (ENSAMXG00000039913)	tbc1d20 (ENSAMXG00000041540)	rbck1 (ENSAMXG00000004941)	ENSAMXG00000037599	rpp14 (ENSAMXG00000042078)	HTD2 (ENSAMXG00000025978)	pxk (ENSAMXG00000004944)	pdhb (ENSAMXG00000004949)	kctd6a (ENSAMXG00000033161)	ccdc71 (ENSAMXG00000025979)	stab1 (ENSAMXG00000004966)
Red-bellied piranha	MODERN SPECIES	103																CELA1 (ENSPNAG00000029808) #22	ENSPNAG00000029818 #22	gls2b (ENSPNAG00000029837)	rdh5 (ENSPNAG00000029847)	bloc1s1 (ENSPNAG00000029856)	tbc1d20 (ENSPNAG00000029862)	rbck1 (ENSPNAG00000029872)	rpp14 (ENSPNAG00000029880)	HTD2 (ENSPNAG00000029891)	pxk (ENSPNAG00000029914)	pdhb (ENSPNAG00000029924)	kctd6a (ENSPNAG00000029932)	ccdc71 (ENSPNAG00000029934)	stab1 (ENSPNAG00000005656)	NISCH (ENSPNAG00000029982)	ENSPNAG00000004690
Characoidei	ANCESTRAL SPECIES	38															ENSGT01030000234528.B.b.a.a.a.d.a.a #22	ENSGT01030000234528.B.b.a.a.a.d.a.b #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00390000014944.a	ENSGT00940000166000	ENSGT00510000048121	ENSGT00530000065109	ENSGT00390000017669	ENSGT00940000155146	ENSGT00940000157869.e.b	ENSGT00940000155306.a	ENSGT00940000157928	ENSGT00940000156494	ENSGT00620000089227	ENSGT00390000004860
Red-bellied piranha	MODERN SPECIES	103															CELA1 (ENSPNAG00000029808) #22	ENSPNAG00000029818 #22	gls2b (ENSPNAG00000029837)	rdh5 (ENSPNAG00000029847)	bloc1s1 (ENSPNAG00000029856)	tbc1d20 (ENSPNAG00000029862)	rbck1 (ENSPNAG00000029872)	rpp14 (ENSPNAG00000029880)	HTD2 (ENSPNAG00000029891)	pxk (ENSPNAG00000029914)	pdhb (ENSPNAG00000029924)	kctd6a (ENSPNAG00000029932)	ccdc71 (ENSPNAG00000029934)	stab1 (ENSPNAG00000005656)	NISCH (ENSPNAG00000029982)	ENSPNAG00000004690	nol8 (ENSPNAG00000029992)
Electric eel	MODERN SPECIES	237											cers5 (ENSEEEG00000007622)	gpd1b (ENSEEEG00000007630)	smarcd1 (ENSEEEG00000007720)	ENSEEEG00000007728	asic1b (ENSEEEG00000007733)	CELA1 (ENSEEEG00000007734) #22	gls2b (ENSEEEG00000007742)	rdh5 (ENSEEEG00000007744)	bloc1s1 (ENSEEEG00000007803)	tbc1d20 (ENSEEEG00000007805)	rbck1 (ENSEEEG00000007806)	rpp14 (ENSEEEG00000007807)	HTD2 (ENSEEEG00000007808)	pxk (ENSEEEG00000007812)	pdhb (ENSEEEG00000007841)	kctd6a (ENSEEEG00000007848)	ccdc71 (ENSEEEG00000007849)	stab1 (ENSEEEG00000007865)	NISCH (ENSEEEG00000008053)	ENSEEEG00000008064	ENSEEEG00000008068
Characiphysae_b	DUPLICATION
Characiphysae_b	ANCESTRAL SPECIES	78	ENSGT00390000017193	ENSGT00940000169304	ENSGT00390000014634	ENSGT00530000062932	ENSGT00940000155214.k.a	ENSGT00440000039084.a.b	ENSGT00390000001761	ENSGT00940000165981	ENSGT00530000064123.g	ENSGT00390000004524	ENSGT00940000156744.p	ENSGT00390000004511.c.a.d	ENSGT00940000155826	ENSGT00390000014107.a.a	ENSGT00950000183005.a.b	ENSGT01030000234528.B.b.a.a.a.d.b.a #22	ENSGT00940000158867	ENSGT00940000160259.f	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000158075	ENSGT00390000017123.b	ENSGT00940000165922	ENSGT00940000159383	ENSGT00940000158840	ENSGT00390000007109	ENSGT00940000172372	ENSGT00940000157979	ENSGT00390000014471	ENSGT00940000153212.bb.b.b	ENSGT00940000153212.bb.b.a
Characoidei	ANCESTRAL SPECIES	284											ENSGT00390000004511.c.a.d	ENSGT00940000155826	ENSGT00390000014107.a.a	ENSGT00950000183005.a.b	ENSGT00940000163149.b.c.a.d	ENSGT01030000234528.B.b.a.a.a.d.b.a #22	ENSGT00940000158867	ENSGT00940000165000	ENSGT00940000161645.a	ENSGT00940000158075	ENSGT00390000017123.b	ENSGT00940000165922	ENSGT00940000159383	ENSGT00940000158840
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	280	CMKLR1 (ENSPNAG00000001271)	ENSPNAG00000008970	ENSPNAG00000008983	ENSPNAG00000008995	CMKLR1 (ENSPNAG00000009016)	ENSPNAG00000009023	ENSPNAG00000009032	cmklr1 (ENSPNAG00000009040)	CMKLR1 (ENSPNAG00000009048)	wscd2 (ENSPNAG00000005405)	carnmt1 (ENSPNAG00000009100)	trpm6 (ENSPNAG00000009126)	rorb (ENSPNAG00000009139)	MFSD3 (ENSPNAG00000009159)	anxa1a (ENSPNAG00000009223)	ENSPNAG00000009869 #22	ENSPNAG00000009898	mbd2 (ENSPNAG00000009910)	rnf185 (ENSPNAG00000009937)	YTHDC2 (ENSPNAG00000010128)	ENSPNAG00000010167
Red-bellied piranha	MODERN SPECIES	2547																ENSPNAG00000013879 #22
Red-bellied piranha	MODERN SPECIES	2261																ENSPNAG00000003113 #22
Red-bellied piranha	MODERN SPECIES	296															ENSPNAG00000002399	ENSPNAG00000012832 #22	ENSPNAG00000002498 #22	ENSPNAG00000013019 #22	dcc (ENSPNAG00000013078)	trabd2a (ENSPNAG00000013117)	ENSPNAG00000013128	HOOK3 (ENSPNAG00000013166)	rnf170 (ENSPNAG00000002602)	june (ENSPNAG00000013186)	ENSPNAG00000013188
Mexicana tetra	MODERN SPECIES	153	surf4 (ENSAMXG00000008115)	surf2 (ENSAMXG00000008087)	bbln (ENSAMXG00000033178)	ENSAMXG00000008021	dnm1a (ENSAMXG00000007980)	golga2 (ENSAMXG00000007941)	haus4 (ENSAMXG00000007907)	ddrgk1 (ENSAMXG00000007876)	LZTS3 (ENSAMXG00000041913)	FASTKD5 (ENSAMXG00000025880)	ENSAMXG00000041481	rnf185 (ENSAMXG00000007798)	mbd2 (ENSAMXG00000042143)	ENSAMXG00000036262	ENSAMXG00000030416	CELA1 (ENSAMXG00000014225) #22	dcc (ENSAMXG00000014271)	trabd2a (ENSAMXG00000041427)	HOOK3 (ENSAMXG00000014373)	rnf170 (ENSAMXG00000036159)	june (ENSAMXG00000025986)	THAP1 (ENSAMXG00000029741)	ENSAMXG00000035930	tek (ENSAMXG00000007111)
Electric eel	MODERN SPECIES	853													rnf185 (ENSEEEG00000004491)	mbd2 (ENSEEEG00000004488)	ENSEEEG00000004245	ENSEEEG00000004211 #22	dcc (ENSEEEG00000004208)
Characiphysae_b	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d.b.b #22
Characoidei	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d.b.b #22
Red-bellied piranha	DUPLICATION
Red-bellied piranha	MODERN SPECIES	296													ENSPNAG00000002399	ENSPNAG00000012832 #22	ENSPNAG00000002498 #22	ENSPNAG00000013019 #22	dcc (ENSPNAG00000013078)	trabd2a (ENSPNAG00000013117)	ENSPNAG00000013128	HOOK3 (ENSPNAG00000013166)	rnf170 (ENSPNAG00000002602)	june (ENSPNAG00000013186)	ENSPNAG00000013188
Red-bellied piranha	MODERN SPECIES	296														ENSPNAG00000002399	ENSPNAG00000012832 #22	ENSPNAG00000002498 #22	ENSPNAG00000013019 #22	dcc (ENSPNAG00000013078)	trabd2a (ENSPNAG00000013117)	ENSPNAG00000013128	HOOK3 (ENSPNAG00000013166)	rnf170 (ENSPNAG00000002602)	june (ENSPNAG00000013186)	ENSPNAG00000013188
Channel catfish	MODERN SPECIES	13	podxl2 (ENSIPUG00000009274)	mcm2 (ENSIPUG00000009302)	ccdc51 (ENSIPUG00000009350)	ENSIPUG00000009357	ENSIPUG00000009381	dnase1l4.2 (ENSIPUG00000009506)	ENSIPUG00000009514	bcdin3d (ENSIPUG00000009539)	ENSIPUG00000009553	CERS5 (ENSIPUG00000009566)	gpd1 (ENSIPUG00000009634)	smarcd1 (ENSIPUG00000009660)	asic1 (ENSIPUG00000009680)	ENSIPUG00000009724	ENSIPUG00000009731	tmprss12 (ENSIPUG00000009741) #22	gls2b (ENSIPUG00000009764)	ENSIPUG00000009923	rdh5 (ENSIPUG00000009950)	bloc1s1 (ENSIPUG00000009969)	tbc1d20 (ENSIPUG00000010009)	rbck1 (ENSIPUG00000010047)	rpp14 (ENSIPUG00000010066)	HTD2 (ENSIPUG00000010099)	PXK (ENSIPUG00000010143)	pdhb (ENSIPUG00000010279)	KCTD6 (ENSIPUG00000010343)	ccdc71 (ENSIPUG00000010381)	stab1 (ENSIPUG00000010453)	nisch (ENSIPUG00000010896)	ENSIPUG00000010913
Cyprinoidei	DUPLICATION
Cyprinoidei	ANCESTRAL SPECIES	96	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00940000166028	ENSGT00950000182846.a.a.b.b	ENSGT00950000182846.a.a.b.a.d	ENSGT00940000163467.a.b.b.b.a.a	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d.c #22	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.b.b.b.a.a.a.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	815													ENSGT00390000003114.e.a.b.c	ENSGT00940000156629.c.b	ENSGT00940000168601.b	ENSGT01030000234528.B.b.a.a.a.d.c.a #22	ENSGT01050000244806.b.a.b.c.a.a.b.a	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.a.a.a.a.a.a.a.b.a	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.b.b.b.a.a.a.b.a.b.a.a.b.a.a.a.b	ENSGT01100000263547.a.b.b.a.a.a.a.b.b.a.b.b.b.a.a.a
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	760																cela1.6 (ENSCARG00000036326) #22	ENSCARG00000036322	ENSCARG00000036308	ENSCARG00000036305	ENSCARG00000036293	ENSCARG00000036287	ENSCARG00000036282	ENSCARG00000036277	ENSCARG00000036268	ENSCARG00000036251	ENSCARG00000036218	ENSCARG00000036202	CACNA2D2 (ENSCARG00000034649)	ENSCARG00000034280	ENSCARG00000034268	ENSCARG00000034259
Goldfish	MODERN SPECIES	395											ENSCARG00000023472	ENSCARG00000023477	gpd1b (ENSCARG00000023485)	smarcd1 (ENSCARG00000023720)	ENSCARG00000026365	cela1.6 (ENSCARG00000027655) #22	ENSCARG00000027677	ENSCARG00000027687	ENSCARG00000027699
Cyprininae_a	ANCESTRAL SPECIES	584													ENSGT00390000003114.e.a.b.c	ENSGT00940000156629.c.b	ENSGT00940000168601.b	ENSGT01030000234528.B.b.a.a.a.d.c.a #22	ENSGT01050000244806.b.a.b.c.a.a.b.a	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.a.a.a.a.a.a.a.b.a	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.b.b.b.a.a.a.b.a.b.a.a.b.a.a.a.b	ENSGT01100000263547.a.b.b.a.a.a.a.b.b.a.b.b.b.a.a.a	ENSGT00940000156238.a.b	ENSGT00400000022095.b.b
Common carp reference	MODERN SPECIES	43	ENSCCRG00000012696	ENSCCRG00000017129	ENSCCRG00000059791	ENSCCRG00000074651	ENSCCRG00000077803	ENSCCRG00000070237	ENSCCRG00000055490	ENSCCRG00000030410	ENSCCRG00000031004	ENSCCRG00000028117	ENSCCRG00000059720	ENSCCRG00000077366	gpd1b (ENSCCRG00000068821)	smarcd1 (ENSCCRG00000008523)	ENSCCRG00000020257	cela1.6 (ENSCCRG00000024881) #22	ENSCCRG00000045905	ENSCCRG00000071327	ENSCCRG00000066234	ENSCCRG00000029590	ENSCCRG00000029580	ENSCCRG00000029571	ENSCCRG00000062441	ENSCCRG00000017148	ENSCCRG00000067439	ENSCCRG00000017186	ENSCCRG00000017313	ENSCCRG00000012263	ENSCCRG00000058822	ENSCCRG00000058109	ENSCCRG00000037049
Golden-line barbel	MODERN SPECIES	1072									ENSSGRG00000022684	ENSSGRG00000022682	ENSSGRG00000022681	ENSSGRG00000022680	gpd1b (ENSSGRG00000022158)	smarcd1 (ENSSGRG00000022106)	ENSSGRG00000021651	cela1.6 (ENSSGRG00000021639) #22	ENSSGRG00000021636	ENSSGRG00000021635
Cyprininae	ANCESTRAL SPECIES	891											ENSGT00950000183052.b.c.a.a.b.b.a.a.a	ENSGT00950000182858.A.b.b.g.b.t.b.b	ENSGT00390000003114.e.a.b.d	ENSGT00940000156629.d	ENSGT00940000168601.a	ENSGT01030000234528.B.b.a.a.a.d.c.b #22	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.b.b.b.a.a.a.a.a.b.b.a
Cyprininae_a	ANCESTRAL SPECIES	805														ENSGT00940000156629.c.a	ENSGT00940000168601.a	ENSGT01030000234528.B.b.a.a.a.d.c.b #22	ENSGT01050000244806.b.a.b.c.a.a.a.a.a.b.a.b.b.a.b.b.b.b.b.b.a.a.a.a.a.b.b.a
Common carp reference	MODERN SPECIES	5	ENSCCRG00000027446	ENSCCRG00000034701	ENSCCRG00000070051	ENSCCRG00000063921	ENSCCRG00000017173	ENSCCRG00000043660	ENSCCRG00000073018	ENSCCRG00000066508	ENSCCRG00000009993	ENSCCRG00000078880	ENSCCRG00000057545	ENSCCRG00000066245	gpd1b (ENSCCRG00000020211)	ENSCCRG00000020235	ENSCCRG00000008534	cela1.6 (ENSCCRG00000065573) #22	ENSCCRG00000024871	ENSCCRG00000073495	ENSCCRG00000034238	ENSCCRG00000065268	ENSCCRG00000074512	ENSCCRG00000081735	ENSCCRG00000066178	ENSCCRG00000057208	ENSCCRG00000036851	ENSCCRG00000076879	ENSCCRG00000057123	ENSCCRG00000061722	ENSCCRG00000072807	ENSCCRG00000059158	ENSCCRG00000054800
Golden-line barbel	MODERN SPECIES	1416																cela1.6 (ENSSGRG00000019668) #22	ENSSGRG00000019664	ENSSGRG00000019663	ENSSGRG00000019662	ENSSGRG00000019661
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	1322																cela1.6 (ENSCARG00000036963) #22	ENSCARG00000036953	ENSCARG00000036882
Goldfish	MODERN SPECIES	14	slx9 (ENSCARG00000030582)	ENSCARG00000030708	cnot9 (ENSCARG00000034144)	ftcd (ENSCARG00000034487)	mstna (ENSCARG00000035931)	stat1a (ENSCARG00000035963)	glsa (ENSCARG00000036617)	nab1a (ENSCARG00000040133)	mfsd6a (ENSCARG00000040144)	ENSCARG00000040156	ahr1b (ENSCARG00000040185)	ENSCARG00000040267	ahr2 (ENSCARG00000040299)	ENSCARG00000040642	ENSCARG00000040720	cela1.6 (ENSCARG00000042709) #22	ENSCARG00000042744	ENSCARG00000042799	ENSCARG00000042821	ENSCARG00000042828	ENSCARG00000042842	ENSCARG00000042855	ENSCARG00000042865	ENSCARG00000042875	rbck1 (ENSCARG00000042920)	tbc1d20 (ENSCARG00000043050)	bloc1s1 (ENSCARG00000043091)	rdh5 (ENSCARG00000043145)	rdh5 (ENSCARG00000043185)	gls2b (ENSCARG00000043284)	ENSCARG00000043384
Zebrafish	MODERN SPECIES	14	ENSDARG00000090612	ENSDARG00000090601	ENSDARG00000090869	ENSDARG00000092230	ENSDARG00000100301	ENSDARG00000090310	zgc:171500 (ENSDARG00000071553)	ENSDARG00000058753	ENSDARG00000075027	ENSDARG00000104015	gpd1b (ENSDARG00000043180)	smarcd1 (ENSDARG00000019004)	asic1b (ENSDARG00000101866)	ENSDARG00000105115	ENSDARG00000114939	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22
Cyprinoidei	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d.d #22
Zebrafish	DUPLICATION
Zebrafish	DUPLICATION
Zebrafish	DUPLICATION
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	14	ENSDARG00000100301	ENSDARG00000090310	zgc:171500 (ENSDARG00000071553)	ENSDARG00000058753	ENSDARG00000075027	ENSDARG00000104015	gpd1b (ENSDARG00000043180)	smarcd1 (ENSDARG00000019004)	asic1b (ENSDARG00000101866)	ENSDARG00000105115	ENSDARG00000114939	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22	ENSDARG00000040640	ENSDARG00000077115	ENSDARG00000094821	ENSDARG00000079645
Zebrafish	MODERN SPECIES	14	ENSDARG00000092230	ENSDARG00000100301	ENSDARG00000090310	zgc:171500 (ENSDARG00000071553)	ENSDARG00000058753	ENSDARG00000075027	ENSDARG00000104015	gpd1b (ENSDARG00000043180)	smarcd1 (ENSDARG00000019004)	asic1b (ENSDARG00000101866)	ENSDARG00000105115	ENSDARG00000114939	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22	ENSDARG00000040640	ENSDARG00000077115	ENSDARG00000094821
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	14	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22	ENSDARG00000040640	ENSDARG00000077115	ENSDARG00000094821	ENSDARG00000079645	ENSDARG00000103183	ENSDARG00000099511	ENSDARG00000099023	ENSDARG00000100357	ENSDARG00000116833	ENSDARG00000088198	ENSDARG00000089720	ENSDARG00000079145	ENSDARG00000086584	ENSDARG00000074844	ENSDARG00000116207
Zebrafish	MODERN SPECIES	14	ENSDARG00000058753	ENSDARG00000075027	ENSDARG00000104015	gpd1b (ENSDARG00000043180)	smarcd1 (ENSDARG00000019004)	asic1b (ENSDARG00000101866)	ENSDARG00000105115	ENSDARG00000114939	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22	ENSDARG00000040640	ENSDARG00000077115	ENSDARG00000094821	ENSDARG00000079645	ENSDARG00000103183	ENSDARG00000099511	ENSDARG00000099023
Zebrafish	DUPLICATION
Zebrafish	MODERN SPECIES	14	ENSDARG00000114939	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22	ENSDARG00000040640	ENSDARG00000077115	ENSDARG00000094821	ENSDARG00000079645	ENSDARG00000103183	ENSDARG00000099511	ENSDARG00000099023	ENSDARG00000100357	ENSDARG00000116833	ENSDARG00000088198	ENSDARG00000089720	ENSDARG00000079145	ENSDARG00000086584	ENSDARG00000074844
Zebrafish	MODERN SPECIES	14	zgc:171500 (ENSDARG00000071553)	ENSDARG00000058753	ENSDARG00000075027	ENSDARG00000104015	gpd1b (ENSDARG00000043180)	smarcd1 (ENSDARG00000019004)	asic1b (ENSDARG00000101866)	ENSDARG00000105115	ENSDARG00000114939	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22	ENSDARG00000040640	ENSDARG00000077115	ENSDARG00000094821	ENSDARG00000079645	ENSDARG00000103183	ENSDARG00000099511
Zebrafish	MODERN SPECIES	14	ENSDARG00000090310	zgc:171500 (ENSDARG00000071553)	ENSDARG00000058753	ENSDARG00000075027	ENSDARG00000104015	gpd1b (ENSDARG00000043180)	smarcd1 (ENSDARG00000019004)	asic1b (ENSDARG00000101866)	ENSDARG00000105115	ENSDARG00000114939	cela1.6 (ENSDARG00000017314) #22	ENSDARG00000071636	ENSDARG00000104176	cela1.1 (ENSDARG00000043175) #22	cela1.2 (ENSDARG00000095462) #22	cela1.3 (ENSDARG00000043173) #22	cela1.4 (ENSDARG00000043171) #22	cela1.5 (ENSDARG00000043168) #22	ENSDARG00000099364	ENSDARG00000071629	ENSDARG00000104640	ENSDARG00000113065	ENSDARG00000116984	ENSDARG00000013022	ENSDARG00000092890 #22	ENSDARG00000077058 #22	ENSDARG00000040640	ENSDARG00000077115	ENSDARG00000094821	ENSDARG00000079645	ENSDARG00000103183
Cyprininae	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d.d #22
Goldfish	DUPLICATION
Goldfish	MODERN SPECIES	14	ENSCARG00000004686	zgc:171566 (ENSCARG00000004671)	ENSCARG00000004665	mcm2 (ENSCARG00000004622)	ccdc51 (ENSCARG00000004608)	ENSCARG00000004602	dnase1l4.1 (ENSCARG00000004576)	dnase1l4.2 (ENSCARG00000004552)	ENSCARG00000004523	BCDIN3D (ENSCARG00000004498)	ENSCARG00000004495	cers5 (ENSCARG00000004396)	ENSCARG00000004366	ENSCARG00000004356	ENSCARG00000004346	ENSCARG00000004334 #22	ENSCARG00000004314	ENSCARG00000004295	ENSCARG00000004284	ENSCARG00000004276	ENSCARG00000004242	ENSCARG00000004222	ENSCARG00000004207	MYO9B (ENSCARG00000004130)	zgc:194627 (ENSCARG00000004111)	ENSCARG00000004104	zgc:194627 (ENSCARG00000004088)	ENSCARG00000004061	ENSCARG00000004047	ENSCARG00000004036	ENSCARG00000004026
Goldfish	MODERN SPECIES	14	ENSCARG00000059567	ENSCARG00000059602	ENSCARG00000059624	ENSCARG00000059671	ENSCARG00000059686	ENSCARG00000059716	ENSCARG00000059733	ENSCARG00000059812	CERS1 (ENSCARG00000060032)	ncln (ENSCARG00000060185)	s1pr4 (ENSCARG00000061779)	ENSCARG00000061788	ENSCARG00000061799	ENSCARG00000061807	ENSCARG00000061813	ENSCARG00000061821 #22	ENSCARG00000061837	ENSCARG00000061846	ENSCARG00000061855	ENSCARG00000061879	ENSCARG00000061915	ENSCARG00000061926	ENSCARG00000061937	ENSCARG00000061948	ENSCARG00000061960	ENSCARG00000061970	ENSCARG00000061977	ENSCARG00000061982	ENSCARG00000061992	ENSCARG00000062012	ENSCARG00000062040
Cyprininae_a	ANCESTRAL SPECIES																	ENSGT01030000234528.B.b.a.a.a.d.d #22
Common carp reference	MODERN SPECIES	5	dnase1l4.1 (ENSCCRG00000065204)	ENSCCRG00000074839	dnase1l4.1 (ENSCCRG00000026272)	dnase1l4.2 (ENSCCRG00000026300)	ENSCCRG00000064108	ENSCCRG00000068149	ENSCCRG00000044740	ENSCCRG00000057310	ENSCCRG00000067065	cers5 (ENSCCRG00000051105)	ENSCCRG00000054857	ENSCCRG00000044359	ENSCCRG00000066856	ENSCCRG00000033310	ENSCCRG00000055521	ENSCCRG00000054009 #22	ENSCCRG00000059446	ENSCCRG00000081143	ENSCCRG00000056578	ENSCCRG00000061896	ENSCCRG00000063646	ENSCCRG00000067145	ENSCCRG00000053105	ENSCCRG00000065152	ENSCCRG00000077060	ENSCCRG00000058964	ENSCCRG00000057925	ENSCCRG00000070751	ENSCCRG00000070735	ENSCCRG00000079040	ENSCCRG00000082700
Clupeiformes	ANCESTRAL SPECIES	475									ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000168601	ENSGT01030000234528.B.b.a.a.a.d #22	ENSGT00390000010463.a.a.a.a
Denticle herring	MODERN SPECIES	11	vapb (ENSDCDG00000001893)	rab22a (ENSDCDG00000001883)	ENSDCDG00000001681	ccndbp1 (ENSDCDG00000001659)	h1-10 (ENSDCDG00000001656)	arpc4 (ENSDCDG00000001652)	traip (ENSDCDG00000001640)	ENSDCDG00000001628	ENSDCDG00000001624	BCDIN3D (ENSDCDG00000001620)	ENSDCDG00000001615	cers5 (ENSDCDG00000001592)	gpd1b (ENSDCDG00000001568)	smarcd1 (ENSDCDG00000001557)	ENSDCDG00000001534	cela1.3 (ENSDCDG00000001524) #22	eefsec (ENSDCDG00000001522)	ruvbl1 (ENSDCDG00000001518)	ENSDCDG00000001497	ccdc174 (ENSDCDG00000001488)	ENSDCDG00000001481	crbn (ENSDCDG00000001475)	prkcda (ENSDCDG00000001344)	RFT1 (ENSDCDG00000001308)	mustn1a (ENSDCDG00000001302)	pck1 (ENSDCDG00000001300)	ahcy (ENSDCDG00000001295)	ENSDCDG00000001289	ENSDCDG00000001282 #29	ENSDCDG00000001279	cnpy2 (ENSDCDG00000001274)
Atlantic herring	DUPLICATION
Atlantic herring	DUPLICATION
Atlantic herring	DUPLICATION
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	21	SPDEF (ENSCHAG00000026175)	ENSCHAG00000026178	RNF41 (ENSCHAG00000026182)	DGKA (ENSCHAG00000026204)	NR4A1 (ENSCHAG00000026446) #13	RACGAP1 (ENSCHAG00000026454)	FNDC11 (ENSCHAG00000026481)	ENSCHAG00000026484	SERINC3 (ENSCHAG00000026490)	tp53rk (ENSCHAG00000026511)	LSM3 (ENSCHAG00000026512)	zgc:171566 (ENSCHAG00000026515)	gls2b (ENSCHAG00000026521)	ENSCHAG00000026534 #22	ENSCHAG00000026579 #22	ENSCHAG00000000209 #22	ENSCHAG00000000678 #22	ENSCHAG00000001209	smarcd1 (ENSCHAG00000001874)	nab2 (ENSCHAG00000001959)	ENSCHAG00000001971	ENSCHAG00000001982 #29	cnpy2 (ENSCHAG00000002032)	cs (ENSCHAG00000002098)	ahcy (ENSCHAG00000003505)	c1galt1lb (ENSCHAG00000004578)	ENSCHAG00000004652	stat2 (ENSCHAG00000004694)	endou (ENSCHAG00000004975)	tsfm (ENSCHAG00000005096)	SMARCC2 (ENSCHAG00000005127)
Atlantic herring	MODERN SPECIES	21	tsfm (ENSCHAG00000005096)	endou (ENSCHAG00000004975)	stat2 (ENSCHAG00000004694)	ENSCHAG00000004652	c1galt1lb (ENSCHAG00000004578)	ahcy (ENSCHAG00000003505)	cs (ENSCHAG00000002098)	cnpy2 (ENSCHAG00000002032)	ENSCHAG00000001982 #29	ENSCHAG00000001971	nab2 (ENSCHAG00000001959)	smarcd1 (ENSCHAG00000001874)	ENSCHAG00000001209	ENSCHAG00000000678 #22	ENSCHAG00000000209 #22	ENSCHAG00000026579 #22	ENSCHAG00000026534 #22	gls2b (ENSCHAG00000026521)	zgc:171566 (ENSCHAG00000026515)	LSM3 (ENSCHAG00000026512)	tp53rk (ENSCHAG00000026511)	SERINC3 (ENSCHAG00000026490)	ENSCHAG00000026484	FNDC11 (ENSCHAG00000026481)	RACGAP1 (ENSCHAG00000026454)	NR4A1 (ENSCHAG00000026446) #13	DGKA (ENSCHAG00000026204)	RNF41 (ENSCHAG00000026182)	ENSCHAG00000026178	SPDEF (ENSCHAG00000026175)	snrpc (ENSCHAG00000026173)
Atlantic herring	MODERN SPECIES	21	scn8ab (ENSCHAG00000005584) #19	SMARCC2 (ENSCHAG00000005127)	tsfm (ENSCHAG00000005096)	endou (ENSCHAG00000004975)	stat2 (ENSCHAG00000004694)	ENSCHAG00000004652	c1galt1lb (ENSCHAG00000004578)	ahcy (ENSCHAG00000003505)	cs (ENSCHAG00000002098)	cnpy2 (ENSCHAG00000002032)	ENSCHAG00000001982 #29	ENSCHAG00000001971	nab2 (ENSCHAG00000001959)	smarcd1 (ENSCHAG00000001874)	ENSCHAG00000001209	ENSCHAG00000000678 #22	ENSCHAG00000000209 #22	ENSCHAG00000026579 #22	ENSCHAG00000026534 #22	gls2b (ENSCHAG00000026521)	zgc:171566 (ENSCHAG00000026515)	LSM3 (ENSCHAG00000026512)	tp53rk (ENSCHAG00000026511)	SERINC3 (ENSCHAG00000026490)	ENSCHAG00000026484	FNDC11 (ENSCHAG00000026481)	RACGAP1 (ENSCHAG00000026454)	NR4A1 (ENSCHAG00000026446) #13	DGKA (ENSCHAG00000026204)	RNF41 (ENSCHAG00000026182)	ENSCHAG00000026178
Atlantic herring	MODERN SPECIES	21	endou (ENSCHAG00000004975)	stat2 (ENSCHAG00000004694)	ENSCHAG00000004652	c1galt1lb (ENSCHAG00000004578)	ahcy (ENSCHAG00000003505)	cs (ENSCHAG00000002098)	cnpy2 (ENSCHAG00000002032)	ENSCHAG00000001982 #29	ENSCHAG00000001971	nab2 (ENSCHAG00000001959)	smarcd1 (ENSCHAG00000001874)	ENSCHAG00000001209	ENSCHAG00000000678 #22	ENSCHAG00000000209 #22	ENSCHAG00000026579 #22	ENSCHAG00000026534 #22	gls2b (ENSCHAG00000026521)	zgc:171566 (ENSCHAG00000026515)	LSM3 (ENSCHAG00000026512)	tp53rk (ENSCHAG00000026511)	SERINC3 (ENSCHAG00000026490)	ENSCHAG00000026484	FNDC11 (ENSCHAG00000026481)	RACGAP1 (ENSCHAG00000026454)	NR4A1 (ENSCHAG00000026446) #13	DGKA (ENSCHAG00000026204)	RNF41 (ENSCHAG00000026182)	ENSCHAG00000026178	SPDEF (ENSCHAG00000026175)	snrpc (ENSCHAG00000026173)	ANKRD52 (ENSCHAG00000025372)
Atlantic herring	DUPLICATION
Atlantic herring	MODERN SPECIES	1	ENSCHAG00000008757	rabggta (ENSCHAG00000008769)	tgm1l4 (ENSCHAG00000008831)	ENSCHAG00000009173	olfml2ba (ENSCHAG00000009203)	atf6 (ENSCHAG00000009211)	ENSCHAG00000009247	lmx1a (ENSCHAG00000009697)	ENSCHAG00000009769	ENSCHAG00000009776	sele (ENSCHAG00000009814)	ENSCHAG00000009854	si:dkey-51e6.1 (ENSCHAG00000009871)	ENSCHAG00000009887	ENSCHAG00000009908	CELA1 (ENSCHAG00000009981) #22	ENSCHAG00000010027 #22	ENSCHAG00000010047	ENSCHAG00000010058	ENSCHAG00000010133	ENSCHAG00000010200	scyl3 (ENSCHAG00000010242)	prg4b (ENSCHAG00000010290)	tprb (ENSCHAG00000010540)	pdcb (ENSCHAG00000014371)	ptgs2b (ENSCHAG00000014478)	PLA2G4A (ENSCHAG00000015900)	arpc5b (ENSCHAG00000016442)	HMCN1 (ENSCHAG00000016511)	ivns1abpa (ENSCHAG00000017145)	ENSCHAG00000017205
Atlantic herring	MODERN SPECIES	1	rabggta (ENSCHAG00000008769)	tgm1l4 (ENSCHAG00000008831)	ENSCHAG00000009173	olfml2ba (ENSCHAG00000009203)	atf6 (ENSCHAG00000009211)	ENSCHAG00000009247	lmx1a (ENSCHAG00000009697)	ENSCHAG00000009769	ENSCHAG00000009776	sele (ENSCHAG00000009814)	ENSCHAG00000009854	si:dkey-51e6.1 (ENSCHAG00000009871)	ENSCHAG00000009887	ENSCHAG00000009908	CELA1 (ENSCHAG00000009981) #22	ENSCHAG00000010027 #22	ENSCHAG00000010047	ENSCHAG00000010058	ENSCHAG00000010133	ENSCHAG00000010200	scyl3 (ENSCHAG00000010242)	prg4b (ENSCHAG00000010290)	tprb (ENSCHAG00000010540)	pdcb (ENSCHAG00000014371)	ptgs2b (ENSCHAG00000014478)	PLA2G4A (ENSCHAG00000015900)	arpc5b (ENSCHAG00000016442)	HMCN1 (ENSCHAG00000016511)	ivns1abpa (ENSCHAG00000017145)	ENSCHAG00000017205	TRMT1L (ENSCHAG00000017235)
Osteoglossiformes	ANCESTRAL SPECIES	34	ENSGT00390000013951	ENSGT00490000043388.b.a	ENSGT00730000111323	ENSGT01050000244824.F	ENSGT00940000164287	ENSGT00390000003710	ENSGT00940000161090.B.c.b.b.a	ENSGT00940000153993.B	ENSGT01090000260194	ENSGT01030000234515.a.a.a	ENSGT00390000003114.e.a.b	ENSGT00940000156629	ENSGT00940000158414	ENSGT00940000168601	ENSGT00940000165535	ENSGT01030000234528.B.b.a.a.a #22	ENSGT00390000010463.a.a.a.a	ENSGT00940000161168	ENSGT00390000002689	ENSGT00940000159891	ENSGT00390000015021	ENSGT00940000161232	ENSGT00940000160712	ENSGT00390000016619.b	ENSGT00940000155224.c.a	ENSGT00940000154360.A.a	ENSGT00390000010265	ENSGT00940000159006.c.a	ENSGT00940000154129.gd	ENSGT01060000252161	ENSGT00940000160885
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	14	sec13 (ENSSFOG00015007199)	GRIP2 (ENSSFOG00015007150)	slc6a6b (ENSSFOG00015007103)	LSM3 (ENSSFOG00015007071)	zgc:171566 (ENSSFOG00015007061)	ENSSFOG00015007051	mcm2 (ENSSFOG00015007003)	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)
Asian bonytongue	MODERN SPECIES	14	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432)
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	14	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432)	ENSSFOG00015013386
Asian bonytongue	MODERN SPECIES	14	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	44												ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
Asian bonytongue	MODERN SPECIES	44											ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
Asian bonytongue	MODERN SPECIES	14	GRIP2 (ENSSFOG00015007150)	slc6a6b (ENSSFOG00015007103)	LSM3 (ENSSFOG00015007071)	zgc:171566 (ENSSFOG00015007061)	ENSSFOG00015007051	mcm2 (ENSSFOG00015007003)	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	44													ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
Asian bonytongue	MODERN SPECIES	14	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432)	ENSSFOG00015013386	myg1 (ENSSFOG00015013355)	MAP3K12 (ENSSFOG00015013294)
Asian bonytongue	MODERN SPECIES	44															ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
Asian bonytongue	MODERN SPECIES	14	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432)	ENSSFOG00015013386	myg1 (ENSSFOG00015013355)	MAP3K12 (ENSSFOG00015013294)	PCBP2 (ENSSFOG00015013231)	ENSSFOG00015030843
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	14	LSM3 (ENSSFOG00015007071)	zgc:171566 (ENSSFOG00015007061)	ENSSFOG00015007051	mcm2 (ENSSFOG00015007003)	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)
Asian bonytongue	MODERN SPECIES	14	slc6a6b (ENSSFOG00015007103)	LSM3 (ENSSFOG00015007071)	zgc:171566 (ENSSFOG00015007061)	ENSSFOG00015007051	mcm2 (ENSSFOG00015007003)	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)
Asian bonytongue	MODERN SPECIES	14	ENSSFOG00015007051	mcm2 (ENSSFOG00015007003)	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	14	mcm2 (ENSSFOG00015007003)	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)
Asian bonytongue	MODERN SPECIES	44										ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
Asian bonytongue	MODERN SPECIES	14	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432)	ENSSFOG00015013386	myg1 (ENSSFOG00015013355)
Asian bonytongue	MODERN SPECIES	44																ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	DUPLICATION
Asian bonytongue	MODERN SPECIES	14	zgc:171566 (ENSSFOG00015007061)	ENSSFOG00015007051	mcm2 (ENSSFOG00015007003)	ccdc51 (ENSSFOG00015006990)	ENSSFOG00015006878	BCDIN3D (ENSSFOG00015029496)	ENSSFOG00015006854	cers5 (ENSSFOG00015006797)	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)
Asian bonytongue	MODERN SPECIES	44														ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
Asian bonytongue	MODERN SPECIES	14	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432)	ENSSFOG00015013386	myg1 (ENSSFOG00015013355)	MAP3K12 (ENSSFOG00015013294)	PCBP2 (ENSSFOG00015013231)	ENSSFOG00015030843	AMHR2 (ENSSFOG00015013135)
Asian bonytongue	MODERN SPECIES	14	gpd1b (ENSSFOG00015006749)	smarcd1 (ENSSFOG00015006704)	ENSSFOG00015006648	ENSSFOG00015028401 #22	ENSSFOG00015027284 #22	ENSSFOG00015025933 #22	ENSSFOG00015032804 #22	ENSSFOG00015031401 #22	ENSSFOG00015025491 #22	ENSSFOG00015027355 #22	ENSSFOG00015030354 #22	ENSSFOG00015026296 #22	ENSSFOG00015029562 #22	ENSSFOG00015027307 #22	ENSSFOG00015025574 #22	ENSSFOG00015032238 #22	ENSSFOG00015030118 #22	ENSSFOG00015028781 #22	gls2b (ENSSFOG00015013928)	rdh5 (ENSSFOG00015013894)	bloc1s1 (ENSSFOG00015026403)	ITGA7 (ENSSFOG00015013843)	npffl (ENSSFOG00015033293)	PPP1R1A (ENSSFOG00015029572)	PDE1B (ENSSFOG00015013758)	nckap1l (ENSSFOG00015026764)	col2a1b (ENSSFOG00015013432)	ENSSFOG00015013386	myg1 (ENSSFOG00015013355)	MAP3K12 (ENSSFOG00015013294)	PCBP2 (ENSSFOG00015013231)
Asian bonytongue	MODERN SPECIES	44									ENSSFOG00015033193 #22	ENSSFOG00015026581 #22	ENSSFOG00015029315 #22	ENSSFOG00015025193 #22	ENSSFOG00015006624 #22	ENSSFOG00015029411 #22	ENSSFOG00015025964 #22	ENSSFOG00015013989 #22	gls2b (ENSSFOG00015028964)	rdh5 (ENSSFOG00015027652)	bloc1s1 (ENSSFOG00015024449)	ITGA7 (ENSSFOG00015028184)	npffl (ENSSFOG00015024740)	PPP1R1A (ENSSFOG00015026629)	PDE1B (ENSSFOG00015028887)	nckap1l (ENSSFOG00015013680)
P. kingsleyae	MODERN SPECIES	51					mcm2 (ENSPKIG00000024553)	ccdc51 (ENSPKIG00000024587)	TMA7B (ENSPKIG00000024601)	ENSPKIG00000024610	BCDIN3D (ENSPKIG00000024617)	cers5 (ENSPKIG00000024634)	COX14 (ENSPKIG00000024660)	gpd1b (ENSPKIG00000024669)	smarcd1 (ENSPKIG00000024684)	ENSPKIG00000024713	ENSPKIG00000024723	cela1.3 (ENSPKIG00000024733) #22	gls2b (ENSPKIG00000024748)	rdh5 (ENSPKIG00000024770)	bloc1s1 (ENSPKIG00000024779)	ITGA7 (ENSPKIG00000001224)	npffl (ENSPKIG00000001314)	PPP1R1A (ENSPKIG00000001339)	PDE1B (ENSPKIG00000001413)	nckap1l (ENSPKIG00000001551)	col2a1b (ENSPKIG00000001771)	ENSPKIG00000001911	myg1 (ENSPKIG00000001941)	MAP3K12 (ENSPKIG00000002087)	PCBP2 (ENSPKIG00000002205)	AMHR2 (ENSPKIG00000002261)	ENSPKIG00000002298
Reedfish	MODERN SPECIES	11	NCKAP5L (ENSECRG00000010552)	kansl2 (ENSECRG00000010518)	ENSECRG00000010499	ENSECRG00000010495	gdf11 (ENSECRG00000010489)	ENSECRG00000010480	dgkaa (ENSECRG00000010457)	rnf41 (ENSECRG00000010446)	NABP2 (ENSECRG00000010439)	SLC39A5 (ENSECRG00000010422)	ankrd52a (ENSECRG00000010381)	COQ10A (ENSECRG00000010363)	cs (ENSECRG00000010354)	cnpy2 (ENSECRG00000010340)	ENSECRG00000009102	cela1.3 (ENSECRG00000008817) #22	ENSECRG00000008789 #29	copz1 (ENSECRG00000008611)	nfe2 (ENSECRG00000008534)	hnrnpa1b (ENSECRG00000008516)	cbx5 (ENSECRG00000008493)	hoxc4a (ENSECRG00000008487)	hoxc5a (ENSECRG00000008478)	hoxc6a (ENSECRG00000008470)	hoxc8a (ENSECRG00000008466)	hoxc9a (ENSECRG00000008462)	ENSECRG00000008455	hoxc11a (ENSECRG00000008444)	hoxc12b (ENSECRG00000008441)	hoxc13a (ENSECRG00000008431)	calcoco1b (ENSECRG00000008412)
Elephant shark	MODERN SPECIES	1805							ENSCMIG00000013067	ENSCMIG00000013065	ENSCMIG00000013062	ENSCMIG00000013061	ENSCMIG00000013059	ENSCMIG00000013058	ENSCMIG00000013054	SLC4A8 (ENSCMIG00000012901) #20	ENSCMIG00000012841 #21	ENSCMIG00000012829 #22	ENSCMIG00000012822 #29	CSRNP2 (ENSCMIG00000012820) #28
Gnathostomata	ANCESTRAL SPECIES	634																ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000164858
Elephant shark	DUPLICATION
Elephant shark	DUPLICATION
Elephant shark	MODERN SPECIES	1791								snap47 (ENSCMIG00000008593)	jmjd4 (ENSCMIG00000008597)	ALS2CL (ENSCMIG00000008602)	ENSCMIG00000008611	ELP6 (ENSCMIG00000008617)	SCAP (ENSCMIG00000008644)	ENSCMIG00000008829	ptpn23a (ENSCMIG00000008837)	ENSCMIG00000008858 ##22	ENSCMIG00000008912 ##22	ENSCMIG00000008954 ##22	ENSCMIG00000008974 ##28	oxsr1b (ENSCMIG00000008997)	myd88 (ENSCMIG00000009146)	ENSCMIG00000009200
Elephant shark	MODERN SPECIES	1791							snap47 (ENSCMIG00000008593)	jmjd4 (ENSCMIG00000008597)	ALS2CL (ENSCMIG00000008602)	ENSCMIG00000008611	ELP6 (ENSCMIG00000008617)	SCAP (ENSCMIG00000008644)	ENSCMIG00000008829	ptpn23a (ENSCMIG00000008837)	ENSCMIG00000008858 ##22	ENSCMIG00000008912 ##22	ENSCMIG00000008954 ##22	ENSCMIG00000008974 ##28	oxsr1b (ENSCMIG00000008997)	myd88 (ENSCMIG00000009146)	ENSCMIG00000009200
Elephant shark	MODERN SPECIES	1791						snap47 (ENSCMIG00000008593)	jmjd4 (ENSCMIG00000008597)	ALS2CL (ENSCMIG00000008602)	ENSCMIG00000008611	ELP6 (ENSCMIG00000008617)	SCAP (ENSCMIG00000008644)	ENSCMIG00000008829	ptpn23a (ENSCMIG00000008837)	ENSCMIG00000008858 ##22	ENSCMIG00000008912 ##22	ENSCMIG00000008954 ##22	ENSCMIG00000008974 ##28	oxsr1b (ENSCMIG00000008997)	myd88 (ENSCMIG00000009146)	ENSCMIG00000009200
Euteleostomi	ANCESTRAL SPECIES	2	ENSGT00940000155281	ENSGT00940000158227	ENSGT00950000183019.f.a	ENSGT00940000165403	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00940000179410	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b	ENSGT00940000153759.a.a
Actinopterygii	ANCESTRAL SPECIES	24	ENSGT00940000155281	ENSGT00940000158227	ENSGT00950000183019.f.a	ENSGT00940000165403	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000158377.b	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT01040000240451.a.b.b.a.a	ENSGT01040000240451.a.b.b.b
Neopterygii	ANCESTRAL SPECIES	32	ENSGT00940000155281	ENSGT00940000158227	ENSGT00950000183019.f.a	ENSGT00940000165403	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B.a	ENSGT00940000158377.b	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT01040000240451.a.b.b.a.a	ENSGT01040000240451.a.b.b.b
Osteoglossocephalai	ANCESTRAL SPECIES	214		ENSGT00990000204628	ENSGT00940000156402.B	ENSGT00940000159338	ENSGT00940000158548	ENSGT00940000173926	ENSGT00940000180074	ENSGT00940000160089	ENSGT00940000156360.c	ENSGT00970000197767	ENSGT00940000160253	ENSGT00940000158392.e.b	ENSGT00390000006098	ENSGT00390000008686.c.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00940000165167	ENSGT00940000154621.a.b.a	ENSGT00510000048324	ENSGT00940000164858	ENSGT01030000234626.C
Clupeocephala	ANCESTRAL SPECIES	151	ENSGT00940000158227	ENSGT00950000183019.f.a.c.a	ENSGT00940000177454	ENSGT00940000155020.u.a.b	ENSGT00940000165403	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000160677	ENSGT00940000154992.a.b	ENSGT00920000149157.d	ENSGT00390000008686.c.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a	ENSGT00530000063629.b.c
Euteleosteomorpha	ANCESTRAL SPECIES	36	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c
Acanthomorphata	ANCESTRAL SPECIES	17	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000154607.b.a	ENSGT00940000158377.b.i.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.b
Euacanthomorphacea	ANCESTRAL SPECIES	16	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT01040000240451.a.b.b.b
Pinecone sodierfish	MODERN SPECIES	12	trpc1 (ENSMMDG00005014745)	CHST2 (ENSMMDG00005014757)	SLC9A9 (ENSMMDG00005014761)	dipk2ab (ENSMMDG00005014766)	plod2 (ENSMMDG00005014786)	ENSMMDG00005014813	zic4 (ENSMMDG00005014816)	zic1 (ENSMMDG00005014818)	AGTR1 (ENSMMDG00005014819)	cpb1 (ENSMMDG00005014820)	gyg1b (ENSMMDG00005014823)	bdh1 (ENSMMDG00005014824)	NCK1 (ENSMMDG00005014828)	slc35g2b (ENSMMDG00005014833)	ENSMMDG00005014836	ENSMMDG00005014839 ##22	csrnp1b (ENSMMDG00005014841) ##28	ENSMMDG00005014842	slc22a13b (ENSMMDG00005014845)	slc22a13b (ENSMMDG00005014855)	slc22a13b (ENSMMDG00005014860)	slc22a13b (ENSMMDG00005014867)	slc22a13b (ENSMMDG00005014874)	slc22a13b (ENSMMDG00005014877)	slc22a13b (ENSMMDG00005014881)	slc22a13b (ENSMMDG00005014892)	oxsr1b (ENSMMDG00005014929)	myd88 (ENSMMDG00005017199)	cry-dash (ENSMMDG00005017204)	map3k22 (ENSMMDG00005017227)	acaa1 (ENSMMDG00005017256)
Percomorphaceae	ANCESTRAL SPECIES	24	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c
Tiger tail seahorse	MODERN SPECIES	250	dipk2ab (ENSHCOG00000011938)	plod2 (ENSHCOG00000011922)	ENSHCOG00000011873	zic4 (ENSHCOG00000011816)	zic1 (ENSHCOG00000011805)	AGTR1 (ENSHCOG00000000344)	cpb1 (ENSHCOG00000011742)	gyg1b (ENSHCOG00000011712)	cluap1 (ENSHCOG00000011685)	bdh1 (ENSHCOG00000011587)	NCK1 (ENSHCOG00000011576)	ENSHCOG00000011571	slc35g2b (ENSHCOG00000011559)	slc35g2b (ENSHCOG00000011544)	ENSHCOG00000011507	ENSHCOG00000011452 ##22	ENSHCOG00000011432	ENSHCOG00000011401	csrnp1b (ENSHCOG00000011387) ##28	LIMD2 (ENSHCOG00000011373)	map3k22 (ENSHCOG00000011362)	ENSHCOG00000011327	ENSHCOG00000011249	ENSHCOG00000011241	trdmt1 (ENSHCOG00000011232)	RSU1 (ENSHCOG00000011204)
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Eupercaria	ANCESTRAL SPECIES	20	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c
Tetraodontidae	DUPLICATION
Tetraodontidae	ANCESTRAL SPECIES	18	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b.d ##22	ENSGT01030000234528.B.b.a.a.b.c ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x.g.a	ENSGT00940000154607.b.a.x.g.b	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a.g	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00900000141099.u	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Tetraodon	DUPLICATION
Tetraodon	MODERN SPECIES	21	u2surp (ENSTNIG00000012767)	pcolce2b (ENSTNIG00000012766)	trpc1 (ENSTNIG00000012765)	dipk2ab (ENSTNIG00000012763)	itga9 (ENSTNIG00000012761)	plod2 (ENSTNIG00000012762)	ENSTNIG00000012760	zic4 (ENSTNIG00000012759)	zic1 (ENSTNIG00000012758)	AGTR1 (ENSTNIG00000012757)	cpb1 (ENSTNIG00000012756)	gyg1b (ENSTNIG00000012755)	bdh1 (ENSTNIG00000012754)	NCK1 (ENSTNIG00000012753)	ENSTNIG00000012751	ENSTNIG00000012750 ##22	ENSTNIG00000000137 ##22	ENSTNIG00000001057 ##22	csrnp1b (ENSTNIG00000012749) ##28	slc22a13b (ENSTNIG00000000028)	slc22a13b (ENSTNIG00000012748)	slc22a13b (ENSTNIG00000000333)	slc22a13b (ENSTNIG00000001339)	oxsr1b (ENSTNIG00000012747)	myd88 (ENSTNIG00000012746)	cry-dash (ENSTNIG00000012745)	map3k22 (ENSTNIG00000012744)	ENSTNIG00000012743	spag6 (ENSTNIG00000012742)	plcd1a (ENSTNIG00000012741)	VILL (ENSTNIG00000012740)
Tetraodon	MODERN SPECIES	21	trpc1 (ENSTNIG00000012765)	dipk2ab (ENSTNIG00000012763)	itga9 (ENSTNIG00000012761)	plod2 (ENSTNIG00000012762)	ENSTNIG00000012760	zic4 (ENSTNIG00000012759)	zic1 (ENSTNIG00000012758)	AGTR1 (ENSTNIG00000012757)	cpb1 (ENSTNIG00000012756)	gyg1b (ENSTNIG00000012755)	bdh1 (ENSTNIG00000012754)	NCK1 (ENSTNIG00000012753)	ENSTNIG00000012751	ENSTNIG00000012750 ##22	ENSTNIG00000000137 ##22	ENSTNIG00000001057 ##22	csrnp1b (ENSTNIG00000012749) ##28	slc22a13b (ENSTNIG00000000028)	slc22a13b (ENSTNIG00000012748)	slc22a13b (ENSTNIG00000000333)	slc22a13b (ENSTNIG00000001339)	oxsr1b (ENSTNIG00000012747)	myd88 (ENSTNIG00000012746)	cry-dash (ENSTNIG00000012745)	map3k22 (ENSTNIG00000012744)	ENSTNIG00000012743	spag6 (ENSTNIG00000012742)	plcd1a (ENSTNIG00000012741)	VILL (ENSTNIG00000012740)	ctdspla (ENSTNIG00000012739)	gars1 (ENSTNIG00000012738)
Fugu	MODERN SPECIES	1	trpc1 (ENSTRUG00000017798)	CHST2 (ENSTRUG00000023815)	dipk2ab (ENSTRUG00000017793)	plod2 (ENSTRUG00000017777)	ENSTRUG00000017774	zic4 (ENSTRUG00000017765)	zic1 (ENSTRUG00000017760)	AGTR1 (ENSTRUG00000017757)	cpb1 (ENSTRUG00000017742)	gyg1b (ENSTRUG00000017735)	bdh1 (ENSTRUG00000017729)	NCK1 (ENSTRUG00000017728)	slc35g2b (ENSTRUG00000017727)	ENSTRUG00000022307	ENSTRUG00000031470 ##22	ENSTRUG00000017710 ##22	csrnp1b (ENSTRUG00000026980) ##28	LIMD2 (ENSTRUG00000020482)	ENSTRUG00000032250	slc22a13b (ENSTRUG00000029708)	slc22a13b (ENSTRUG00000017400)	slc22a13b (ENSTRUG00000001053)	slc22a13b (ENSTRUG00000017699)	slc22a13b (ENSTRUG00000031479)	slc22a13b (ENSTRUG00000004655)	slc22a13b (ENSTRUG00000017447)	oxsr1b (ENSTRUG00000017458)	myd88 (ENSTRUG00000023428)	cry-dash (ENSTRUG00000017478)	map3k22 (ENSTRUG00000017481)	ENSTRUG00000017488
Tetraodontidae	ANCESTRAL SPECIES	18	ENSGT00940000157649	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b.d ##22	ENSGT01030000234528.B.b.a.a.b.c ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x.g.a	ENSGT00940000154607.b.a.x.g.b	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a.g	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00900000141099.u	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b
Tetraodon	MODERN SPECIES	21	pcolce2b (ENSTNIG00000012766)	trpc1 (ENSTNIG00000012765)	dipk2ab (ENSTNIG00000012763)	itga9 (ENSTNIG00000012761)	plod2 (ENSTNIG00000012762)	ENSTNIG00000012760	zic4 (ENSTNIG00000012759)	zic1 (ENSTNIG00000012758)	AGTR1 (ENSTNIG00000012757)	cpb1 (ENSTNIG00000012756)	gyg1b (ENSTNIG00000012755)	bdh1 (ENSTNIG00000012754)	NCK1 (ENSTNIG00000012753)	ENSTNIG00000012751	ENSTNIG00000012750 ##22	ENSTNIG00000000137 ##22	ENSTNIG00000001057 ##22	csrnp1b (ENSTNIG00000012749) ##28	slc22a13b (ENSTNIG00000000028)	slc22a13b (ENSTNIG00000012748)	slc22a13b (ENSTNIG00000000333)	slc22a13b (ENSTNIG00000001339)	oxsr1b (ENSTNIG00000012747)	myd88 (ENSTNIG00000012746)	cry-dash (ENSTNIG00000012745)	map3k22 (ENSTNIG00000012744)	ENSTNIG00000012743	spag6 (ENSTNIG00000012742)	plcd1a (ENSTNIG00000012741)	VILL (ENSTNIG00000012740)	ctdspla (ENSTNIG00000012739)
Fugu	MODERN SPECIES	1	pcolce2b (ENSTRUG00000017807)	trpc1 (ENSTRUG00000017798)	CHST2 (ENSTRUG00000023815)	dipk2ab (ENSTRUG00000017793)	plod2 (ENSTRUG00000017777)	ENSTRUG00000017774	zic4 (ENSTRUG00000017765)	zic1 (ENSTRUG00000017760)	AGTR1 (ENSTRUG00000017757)	cpb1 (ENSTRUG00000017742)	gyg1b (ENSTRUG00000017735)	bdh1 (ENSTRUG00000017729)	NCK1 (ENSTRUG00000017728)	slc35g2b (ENSTRUG00000017727)	ENSTRUG00000022307	ENSTRUG00000031470 ##22	ENSTRUG00000017710 ##22	csrnp1b (ENSTRUG00000026980) ##28	LIMD2 (ENSTRUG00000020482)	ENSTRUG00000032250	slc22a13b (ENSTRUG00000029708)	slc22a13b (ENSTRUG00000017400)	slc22a13b (ENSTRUG00000001053)	slc22a13b (ENSTRUG00000017699)	slc22a13b (ENSTRUG00000031479)	slc22a13b (ENSTRUG00000004655)	slc22a13b (ENSTRUG00000017447)	oxsr1b (ENSTRUG00000017458)	myd88 (ENSTRUG00000023428)	cry-dash (ENSTRUG00000017478)	map3k22 (ENSTRUG00000017481)
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c
Ballan wrasse	MODERN SPECIES	757									AGTR1 (ENSLBEG00000019531)	cpb1 (ENSLBEG00000019569)	gyg1b (ENSLBEG00000019712)	bdh1 (ENSLBEG00000019762)	NCK1 (ENSLBEG00000019775)	slc35g2b (ENSLBEG00000019799)	ENSLBEG00000019814	ENSLBEG00000019854 ##22	csrnp1b (ENSLBEG00000019878) ##28
Eupecaria_B	ANCESTRAL SPECIES	19	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c
Eupecaria_C	ANCESTRAL SPECIES	19	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c	ENSGT00940000156360.c
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	17	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c	ENSGT00940000156360.c
Large yellow croaker	DUPLICATION
Large yellow croaker	MODERN SPECIES	494	trpc1 (ENSLCRG00005012627)	CHST2 (ENSLCRG00005012693)	SLC9A9 (ENSLCRG00005012694)	dipk2ab (ENSLCRG00005012698)	plod2 (ENSLCRG00005012767)	ENSLCRG00005018782	zic4 (ENSLCRG00005018783)	zic1 (ENSLCRG00005018785)	AGTR1 (ENSLCRG00005018786)	cpb1 (ENSLCRG00005018788)	gyg1b (ENSLCRG00005018805)	bdh1 (ENSLCRG00005018813)	NCK1 (ENSLCRG00005018814)	slc35g2b (ENSLCRG00005018815)	ENSLCRG00005018817	ENSLCRG00005018819 ##22	csrnp1b (ENSLCRG00005018823) ##28	LIMD2 (ENSLCRG00005018828)	slc22a13b (ENSLCRG00005018833)	slc22a13b (ENSLCRG00005018844)	oxsr1b (ENSLCRG00005018876)	myd88 (ENSLCRG00005019729)	cry-dash (ENSLCRG00005019735)	map3k22 (ENSLCRG00005019781)	ENSLCRG00005019793	plcd1a (ENSLCRG00005019798)	VILL (ENSLCRG00005019909)	ctdspla (ENSLCRG00005021240)	gars1 (ENSLCRG00005021250)	hhatlb (ENSLCRG00005021258)	klhl40b (ENSLCRG00005021266)
Large yellow croaker	MODERN SPECIES	150																ENSLCRG00005015071 ##22
European seabass	MODERN SPECIES	8	ACAD11 (ENSDLAG00005009448)	pcolce2b (ENSDLAG00005009402)	trpc1 (ENSDLAG00005009394)	CHST2 (ENSDLAG00005009391)	SLC9A9 (ENSDLAG00005009359)	dipk2ab (ENSDLAG00005009352)	PLOD2 (ENSDLAG00005009017)	ENSDLAG00005032171	zic4 (ENSDLAG00005027916)	zic1 (ENSDLAG00005008883)	cpb1 (ENSDLAG00005008791)	gyg1b (ENSDLAG00005008737)	NCK1 (ENSDLAG00005030071)	TMEM22 (ENSDLAG00005033515)	ENSDLAG00005008701	ENSDLAG00005008693 ##22	csrnp1b (ENSDLAG00005008686) ##28	ENSDLAG00005028245	slc22a13b (ENSDLAG00005008613)	slc22a13b (ENSDLAG00005008547)	oxsr1b (ENSDLAG00005007101)	CRY-DASH (ENSDLAG00005006961)	map3k22 (ENSDLAG00005006903)	ENSDLAG00005006829	plcd1a (ENSDLAG00005004449)	VILL (ENSDLAG00005014862)	CTDSL (ENSDLAG00005031689)	gars1 (ENSDLAG00005012902)	gars1 (ENSDLAG00005017209)	hhatlb (ENSDLAG00005012810)	klhl40b (ENSDLAG00005012799)
Gilthead seabream	MODERN SPECIES	10	pcolce2b (ENSSAUG00010015811)	trpc1 (ENSSAUG00010016036)	CHST2 (ENSSAUG00010016134)	SLC9A9 (ENSSAUG00010016137)	dipk2ab (ENSSAUG00010016141)	plod2 (ENSSAUG00010016232)	ENSSAUG00010021788	zic4 (ENSSAUG00010021791)	zic1 (ENSSAUG00010021798)	cpb1 (ENSSAUG00010021806)	gyg1b (ENSSAUG00010021832)	bdh1 (ENSSAUG00010021834)	NCK1 (ENSSAUG00010021837)	slc35g2b (ENSSAUG00010021838)	ENSSAUG00010021839	ENSSAUG00010021841 ##22	csrnp1b (ENSSAUG00010021842) ##28	LIMD2 (ENSSAUG00010021845)	slc22a13b (ENSSAUG00010021846)	slc22a13b (ENSSAUG00010021849)	slc22a13b (ENSSAUG00010021864)	slc22a13b (ENSSAUG00010021875)	oxsr1b (ENSSAUG00010021895)	myd88 (ENSSAUG00010022345)	cry-dash (ENSSAUG00010022353)	ENSSAUG00010022369	prpf4bb (ENSSAUG00010022377)	PXDC1 (ENSSAUG00010022569)	TMX3 (ENSSAUG00010022579)	DSEL (ENSSAUG00010022808)	ENSSAUG00010022809
Perciformes	ANCESTRAL SPECIES	21	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Perciformes_a	ANCESTRAL SPECIES	22	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Pike perch	MODERN SPECIES	417												bdh1 (ENSSLUG00000004936)	NCK1 (ENSSLUG00000004947)	slc35g2b (ENSSLUG00000004951)	gorasp1b (ENSSLUG00000004952)	ENSSLUG00000017006 ##22	csrnp1b (ENSSLUG00000017015) ##28	LIMD2 (ENSSLUG00000017027)	slc22a13b (ENSSLUG00000017039)	ENSSLUG00000017053	ENSSLUG00000017059
Channel bull blenny	MODERN SPECIES	12	trpc1 (ENSCGOG00000022576)	CHST2 (ENSCGOG00000022571)	SLC9A9 (ENSCGOG00000022565)	dipk2ab (ENSCGOG00000022562)	plod2 (ENSCGOG00000020724)	ENSCGOG00000020605	zic4 (ENSCGOG00000020604)	zic1 (ENSCGOG00000020600)	AGTR1 (ENSCGOG00000020598)	cpb1 (ENSCGOG00000020513)	gyg1b (ENSCGOG00000020497)	bdh1 (ENSCGOG00000020495)	NCK1 (ENSCGOG00000020490)	slc35g2b (ENSCGOG00000020489)	ENSCGOG00000020486	ENSCGOG00000020108 ##22	csrnp1b (ENSCGOG00000020095) ##28	ENSCGOG00000020093	slc22a13b (ENSCGOG00000020087)	slc22a13b (ENSCGOG00000020082)	oxsr1b (ENSCGOG00000019330)	myd88 (ENSCGOG00000019275)	cry-dash (ENSCGOG00000019209)	map3k22 (ENSCGOG00000019186)	ENSCGOG00000019180	plcd1a (ENSCGOG00000017960)	VILL (ENSCGOG00000017429)	ctdspla (ENSCGOG00000017347)	gars1 (ENSCGOG00000016987)	gars1 (ENSCGOG00000016768)	hhatlb (ENSCGOG00000016762)
Percomorphaceae_D	ANCESTRAL SPECIES	21	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Anabantaria	ANCESTRAL SPECIES	22	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c	ENSGT00940000156360.c
Anabantoidei	ANCESTRAL SPECIES	20	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c	ENSGT00940000156360.c	ENSGT00940000160089
Climbing perch	MODERN SPECIES	11	trpc1 (ENSATEG00000006446)	CHST2 (ENSATEG00000006518)	SLC9A9 (ENSATEG00000006532)	dipk2ab (ENSATEG00000006549)	plod2 (ENSATEG00000006579)	ENSATEG00000026408	zic4 (ENSATEG00000006678)	zic1 (ENSATEG00000006702)	AGTR1 (ENSATEG00000006900)	cpb1 (ENSATEG00000006905)	gyg1b (ENSATEG00000006946)	bdh1 (ENSATEG00000006964)	ENSATEG00000006985	slc35g2b (ENSATEG00000007003)	ENSATEG00000007029	ENSATEG00000007073 ##22	csrnp1b (ENSATEG00000028053) ##28	ENSATEG00000007742	slc22a13b (ENSATEG00000025937)	slc22a13b (ENSATEG00000027019)	slc22a13b (ENSATEG00000029202)	oxsr1b (ENSATEG00000008014)	myd88 (ENSATEG00000008089)	cry-dash (ENSATEG00000008026)	map3k22 (ENSATEG00000008099)	ENSATEG00000008162	plcd1a (ENSATEG00000008172)	VILL (ENSATEG00000008196)	ctdspla (ENSATEG00000008305)	gars1 (ENSATEG00000008784)	hhatlb (ENSATEG00000008895)
Siamese fighting fish	MODERN SPECIES	15	trpc1 (ENSBSLG00000008993)	CHST2 (ENSBSLG00000008929)	SLC9A9 (ENSBSLG00000008879)	dipk2ab (ENSBSLG00000008871)	plod2 (ENSBSLG00000005775)	ENSBSLG00000005238	zic4 (ENSBSLG00000005192)	zic1 (ENSBSLG00000005169)	AGTR1 (ENSBSLG00000005138)	cpb1 (ENSBSLG00000004952)	gyg1b (ENSBSLG00000004860)	bdh1 (ENSBSLG00000004843)	NCK1 (ENSBSLG00000004829)	slc35g2b (ENSBSLG00000004821)	ENSBSLG00000004794	ENSBSLG00000004765 ##22	csrnp1b (ENSBSLG00000004746) ##28	ENSBSLG00000004433	slc22a13b (ENSBSLG00000004421)	oxsr1b (ENSBSLG00000004082)	myd88 (ENSBSLG00000003946)	cry-dash (ENSBSLG00000003813)	map3k22 (ENSBSLG00000003706)	ENSBSLG00000003609	plcd1a (ENSBSLG00000002878)	VILL (ENSBSLG00000002731)	CTDSPL (ENSBSLG00000002675)	gars1 (ENSBSLG00000002563)	ENSBSLG00000002526	klhl40b (ENSBSLG00000002345)	ZBTB47 (ENSBSLG00000002227)
Zig-zag eel	MODERN SPECIES	12	U2SURP (ENSMAMG00000003004)	pcolce2b (ENSMAMG00000002967)	trpc1 (ENSMAMG00000002921)	CHST2 (ENSMAMG00000002890)	dipk2ab (ENSMAMG00000002858)	plod2 (ENSMAMG00000002720)	ENSMAMG00000002672	zic4 (ENSMAMG00000002664)	zic1 (ENSMAMG00000002634)	AGTR1 (ENSMAMG00000002624)	cpb1 (ENSMAMG00000002592)	gyg1b (ENSMAMG00000002541)	bdh1 (ENSMAMG00000002524)	ENSMAMG00000002509	slc35g2b (ENSMAMG00000002493)	ENSMAMG00000002468 ##22	csrnp1b (ENSMAMG00000002455) ##28	ENSMAMG00000002434	slc22a13b (ENSMAMG00000002424)	oxsr1b (ENSMAMG00000002398)	myd88 (ENSMAMG00000002382)	cry-dash (ENSMAMG00000002310)	map3k22 (ENSMAMG00000002259)	DLEC1 (ENSMAMG00000002142)	plcd1a (ENSMAMG00000002078)	VILL (ENSMAMG00000002041)	ctdspla (ENSMAMG00000002006)	gars1 (ENSMAMG00000001894)	hhatlb (ENSMAMG00000001874)	klhl40b (ENSMAMG00000001831)	ZBTB47 (ENSMAMG00000001808)
Carangaria	ANCESTRAL SPECIES	21	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Carangaria_A	ANCESTRAL SPECIES	15	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Barramundi perch	MODERN SPECIES	47	trpc1 (ENSLCAG00010009131)	CHST2 (ENSLCAG00010009204)	SLC9A9 (ENSLCAG00010009206)	dipk2ab (ENSLCAG00010009218)	plod2 (ENSLCAG00010009358)	ENSLCAG00010010107	zic4 (ENSLCAG00010010115)	zic1 (ENSLCAG00010010119)	AGTR1 (ENSLCAG00010010122)	cpb1 (ENSLCAG00010010131)	gyg1b (ENSLCAG00010010137)	bdh1 (ENSLCAG00010010140)	NCK1 (ENSLCAG00010010142)	slc35g2b (ENSLCAG00010010143)	GORASP1 (ENSLCAG00010010146)	ENSLCAG00010010147 ##22	csrnp1b (ENSLCAG00010010149) ##28	ENSLCAG00010010152	slc22a13b (ENSLCAG00010010153)	oxsr1b (ENSLCAG00010010190)	myd88 (ENSLCAG00010010397)	cry-dash (ENSLCAG00010010408)	map3k22 (ENSLCAG00010010410)	DLEC1 (ENSLCAG00010010418)	plcd1a (ENSLCAG00010010456)	VILL (ENSLCAG00010010531)	ctdspla (ENSLCAG00010010554)	gars1 (ENSLCAG00010010591)	gars1 (ENSLCAG00010010713)	hhatlb (ENSLCAG00010010729)	klhl40b (ENSLCAG00010010734)
Seriola	ANCESTRAL SPECIES	27	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324.e	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Yellowtail amberjack	MODERN SPECIES	2777					plod2 (ENSSLDG00000015111)	ENSSLDG00000015069	zic4 (ENSSLDG00000015055)	zic1 (ENSSLDG00000015044)	AGTR1 (ENSSLDG00000015034)	cpb1 (ENSSLDG00000015016)	gyg1b (ENSSLDG00000014997)	bdh1 (ENSSLDG00000014967)	NCK1 (ENSSLDG00000014945)	slc35g2b (ENSSLDG00000014934)	ENSSLDG00000014921	ENSSLDG00000014817 ##22	csrnp1b (ENSSLDG00000014777) ##28	ENSSLDG00000014762	slc22a13b (ENSSLDG00000014743)	oxsr1b (ENSSLDG00000014715)	myd88 (ENSSLDG00000014687)	cry-dash (ENSSLDG00000014646)	map3k22 (ENSSLDG00000014577)	ENSSLDG00000014533	plcd1a (ENSSLDG00000014485)	VILL (ENSSLDG00000014393)	ctdspla (ENSSLDG00000014337)	gars1 (ENSSLDG00000014279)	gars1 (ENSSLDG00000014238)	hhatlb (ENSSLDG00000014204)	klhl40b (ENSSLDG00000014189)
Greater amberjack	MODERN SPECIES	33												bdh1 (ENSSDUG00000017406)	NCK1 (ENSSDUG00000017373)	slc35g2b (ENSSDUG00000017365)	ENSSDUG00000017354	ENSSDUG00000017316 ##22	csrnp1b (ENSSDUG00000017297) ##28	ENSSDUG00000017284	LIMD2 (ENSSDUG00000017271)	slc22a13b (ENSSDUG00000017234)	oxsr1b (ENSSDUG00000017205)	myd88 (ENSSDUG00000017195)	myd88 (ENSSDUG00000017117)	cry-dash (ENSSDUG00000017085)	map3k22 (ENSSDUG00000017055)	ENSSDUG00000016997	plcd1a (ENSSDUG00000016936)	VILL (ENSSDUG00000016897)	ctdspla (ENSSDUG00000016863)	gars1 (ENSSDUG00000016795)	gars1 (ENSSDUG00000016758)
Pleuronectoidei	ANCESTRAL SPECIES	12	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT00940000182355	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h	ENSGT00530000063629.b.c	ENSGT00940000156360.c
Tongue sole	MODERN SPECIES	13	ENSCSEG00000018087	crygn2 (ENSCSEG00000018078)	ENSCSEG00000018056	eci2 (ENSCSEG00000018048)	zic4 (ENSCSEG00000018041)	zic1 (ENSCSEG00000018028)	ENSCSEG00000018024	AGTR1 (ENSCSEG00000018021)	cpb1 (ENSCSEG00000018009)	gyg1b (ENSCSEG00000017983)	bdh1 (ENSCSEG00000017966)	NCK1 (ENSCSEG00000017949)	ENSCSEG00000017945	slc35g2b (ENSCSEG00000017941)	ENSCSEG00000017930	ENSCSEG00000017925 ##22	csrnp1b (ENSCSEG00000017918) ##28	slc22a13b (ENSCSEG00000017900)	ENSCSEG00000017880	oxsr1b (ENSCSEG00000017842)	myd88 (ENSCSEG00000017825)	cry-dash (ENSCSEG00000017812)	map3k22 (ENSCSEG00000017795)	ENSCSEG00000017769	plcd1a (ENSCSEG00000017745)	VILL (ENSCSEG00000017726)	ctdspla (ENSCSEG00000017706)	gars1 (ENSCSEG00000017671)	gars1 (ENSCSEG00000017654)	hhatlb (ENSCSEG00000017624)	klhl40b (ENSCSEG00000017613)
Turbot	MODERN SPECIES	13	trpc1 (ENSSMAG00000012577)	CHST2 (ENSSMAG00000012627)	SLC9A9 (ENSSMAG00000012633)	dipk2ab (ENSSMAG00000012685)	plod2 (ENSSMAG00000012723)	ENSSMAG00000012845	zic4 (ENSSMAG00000012856)	zic1 (ENSSMAG00000012869)	AGTR1 (ENSSMAG00000012881)	cpb1 (ENSSMAG00000012888)	gyg1b (ENSSMAG00000012944)	bdh1 (ENSSMAG00000034427)	ENSSMAG00000012993	slc35g2b (ENSSMAG00000013109)	ENSSMAG00000013117	ENSSMAG00000013128 ##22	csrnp1b (ENSSMAG00000033284) ##28	ENSSMAG00000013156	slc22a13b (ENSSMAG00000013217)	oxsr1b (ENSSMAG00000013230)	myd88 (ENSSMAG00000013300)	cry-dash (ENSSMAG00000013314)	map3k22 (ENSSMAG00000013366)	ENSSMAG00000013429	plcd1a (ENSSMAG00000013515)	VILL (ENSSMAG00000013594)	ctdspla (ENSSMAG00000025140)	gars1 (ENSSMAG00000013672)	gars1 (ENSSMAG00000013709)	hhatlb (ENSSMAG00000013753)	klhl40b (ENSSMAG00000013798)
Ovalentaria	ANCESTRAL SPECIES	21	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Atherinomorphae	ANCESTRAL SPECIES	19	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c
Cyprinodontiformes	ANCESTRAL SPECIES	20	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c	ENSGT00940000156360.c
Aplocheiloidei	ANCESTRAL SPECIES	18	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c	ENSGT00940000156360.c
Mangrove rivulus	MODERN SPECIES	7	trpc1 (ENSKMAG00000011936)	CHST2 (ENSKMAG00000011898)	SLC9A9 (ENSKMAG00000011867)	dipk2ab (ENSKMAG00000011842)	plod2 (ENSKMAG00000011768)	ENSKMAG00000011727	ENSKMAG00000011705	zic1 (ENSKMAG00000011689)	AGTR1 (ENSKMAG00000011672)	cpb1 (ENSKMAG00000011653)	gyg1b (ENSKMAG00000011607)	bdh1 (ENSKMAG00000011581)	NCK1 (ENSKMAG00000011568)	slc35g2b (ENSKMAG00000011557)	ENSKMAG00000011537	ENSKMAG00000011520 ##22	csrnp1b (ENSKMAG00000011508) ##28	ENSKMAG00000011478	slc22a13b (ENSKMAG00000011447)	ENSKMAG00000011428	slc22a13b (ENSKMAG00000011396)	slc22a13b (ENSKMAG00000011363)	slc22a13b (ENSKMAG00000011331)	slc22a13b (ENSKMAG00000011296)	slc22a13b (ENSKMAG00000011268)	slc22a13b (ENSKMAG00000011212)	oxsr1b (ENSKMAG00000011188)	myd88 (ENSKMAG00000011171)	cry-dash (ENSKMAG00000011097)	map3k22 (ENSKMAG00000011040)	ENSKMAG00000010958
Turquoise killifish	MODERN SPECIES	1617	ENSNFUG00015010991	ENSNFUG00015010996	ENSNFUG00015010998	ENSNFUG00015011003	PLOD2 (ENSNFUG00015011496)	PLSCR1 (ENSNFUG00015020096)	zic4 (ENSNFUG00015020101)	ZIC1 (ENSNFUG00015020105)	ENSNFUG00015020110	AGTR1B (ENSNFUG00015020112)	CPB1 (ENSNFUG00015020115)	BDH1 (ENSNFUG00015020121)	NCK1B (ENSNFUG00015020134)	SLC35G2B (ENSNFUG00015020136)	Nfu_g_1_011289 (ENSNFUG00015020140)	ENSNFUG00015020147 ##22	CSRNP1B (ENSNFUG00015020157) ##28	ENSNFUG00015020164	slc22a13b (ENSNFUG00015020169)	SLC22A13 (ENSNFUG00015020181)	OXSR1B (ENSNFUG00015020223)	MYD88 (ENSNFUG00015021092)	CRY-DASH (ENSNFUG00015021097)	Nfu_g_1_011407 (ENSNFUG00015021106)	ENSNFUG00015021119	plcd1a (ENSNFUG00015021129)	VILL (ENSNFUG00015021160)	ctdspla (ENSNFUG00015021221)	hhatlb (ENSNFUG00015021239)	klhl40b (ENSNFUG00015021244)	ZBTB47 (ENSNFUG00015021246)
Cyprinodontoidei	ANCESTRAL SPECIES	27	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x.p	ENSGT00940000154607.b.a.x.o	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c
Poeciliinae	ANCESTRAL SPECIES	20	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x.p	ENSGT00940000154607.b.a.x.o	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Poecilia	ANCESTRAL SPECIES	17	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x.p	ENSGT00940000154607.b.a.x.o	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
NAME_6	ANCESTRAL SPECIES	22	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x.p	ENSGT00940000154607.b.a.x.o	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b.a	ENSGT00940000158392.e.b.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b
Amazon molly	MODERN SPECIES	322	CHST2 (ENSPFOG00000020906)	SLC9A9 (ENSPFOG00000014256)	dipk2ab (ENSPFOG00000014242)	plod2 (ENSPFOG00000014071)	ENSPFOG00000014059	zic4 (ENSPFOG00000014007)	zic1 (ENSPFOG00000013981)	ENSPFOG00000013971	AGTR1 (ENSPFOG00000020905)	cpb1 (ENSPFOG00000024823)	gyg1b (ENSPFOG00000013901)	bdh1 (ENSPFOG00000013869)	NCK1 (ENSPFOG00000013847)	slc35g2b (ENSPFOG00000020904)	GORASP1 (ENSPFOG00000013838)	ENSPFOG00000013818 ##22	csrnp1b (ENSPFOG00000013790) ##28	LIMD2 (ENSPFOG00000013785)	slc22a13b (ENSPFOG00000013608)	ENSPFOG00000013575	oxsr1b (ENSPFOG00000013445)	myd88 (ENSPFOG00000013420)	cry-dash (ENSPFOG00000013338)	map3k22 (ENSPFOG00000013170)	ENSPFOG00000012880	plcd1a (ENSPFOG00000023983)
Sailfin molly	MODERN SPECIES	310															ENSPLAG00000018660	ENSPLAG00000018682 ##22	csrnp1b (ENSPLAG00000018698) ##28	ENSPLAG00000018722	slc22a13b (ENSPLAG00000018749)	ENSPLAG00000018790	slc22a13b (ENSPLAG00000018860)	oxsr1b (ENSPLAG00000018919)	myd88 (ENSPLAG00000018922)	cry-dash (ENSPLAG00000018965)	map3k22 (ENSPLAG00000019016)	DLEC1 (ENSPLAG00000019166)	plcd1a (ENSPLAG00000019455)	ENSPLAG00000019485	plcd1a (ENSPLAG00000019615)	VILL (ENSPLAG00000019704)	ctdspla (ENSPLAG00000019739)
Guppy	MODERN SPECIES	451	EPC1 (ENSPREG00000022140)	ENSPREG00000022058	ggh (ENSPREG00000022024)	DPP6 (ENSPREG00000021954)	ENSPREG00000021852	zic4 (ENSPREG00000021809)	zic1 (ENSPREG00000021792)	AGTR1 (ENSPREG00000021786)	ENSPREG00000021781	cpb1 (ENSPREG00000021771)	gyg1b (ENSPREG00000021650)	bdh1 (ENSPREG00000021585)	NCK1 (ENSPREG00000021573)	slc35g2b (ENSPREG00000021565)	ENSPREG00000021459	ENSPREG00000021390 ##22	csrnp1b (ENSPREG00000021382) ##28	ENSPREG00000021350	ENSPREG00000021358	slc22a13b (ENSPREG00000021336)	slc22a13b (ENSPREG00000021312)	slc22a13b (ENSPREG00000021285)	oxsr1b (ENSPREG00000021250)	myd88 (ENSPREG00000021234)	cry-dash (ENSPREG00000021219)	map3k22 (ENSPREG00000021179)	ENSPREG00000021123	plcd1a (ENSPREG00000021087)	VILL (ENSPREG00000021063)	CTDSPL (ENSPREG00000021038)	gars1 (ENSPREG00000020960)
Platyfish	MODERN SPECIES	13	pcolce2b (ENSXMAG00000002628)	trpc1 (ENSXMAG00000002645)	CHST2 (ENSXMAG00000020056)	dipk2ab (ENSXMAG00000029512)	plod2 (ENSXMAG00000009123)	ENSXMAG00000009159	zic4 (ENSXMAG00000009162)	zic1 (ENSXMAG00000029482)	AGTR1 (ENSXMAG00000020155)	cpb1 (ENSXMAG00000009168)	gyg1b (ENSXMAG00000009188)	bdh1 (ENSXMAG00000009195)	NCK1 (ENSXMAG00000029896)	slc35g2b (ENSXMAG00000020156)	ENSXMAG00000009210	ENSXMAG00000009212 ##22	csrnp1b (ENSXMAG00000009214) ##28	ENSXMAG00000025579	slc22a13b (ENSXMAG00000009221)	slc22a13b (ENSXMAG00000029586)	slc22a13b (ENSXMAG00000030064)	slc22a13b (ENSXMAG00000029042)	oxsr1b (ENSXMAG00000022528)	myd88 (ENSXMAG00000021546)	cry-dash (ENSXMAG00000009285)	map3k22 (ENSXMAG00000009286)	ENSXMAG00000009312	plcd1a (ENSXMAG00000009326)	VILL (ENSXMAG00000009353)	ctdspla (ENSXMAG00000028416)	gars1 (ENSXMAG00000009402)
NAME_4	ANCESTRAL SPECIES	38	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154607.b.a.x.p	ENSGT00940000154607.b.a.x.o	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00530000063629.b.c
Sheepshead minnow	MODERN SPECIES	736						ENSCVAG00000017270	ENSCVAG00000017290	syt4 (ENSCVAG00000017329)	AGTR1 (ENSCVAG00000000446)	cpb1 (ENSCVAG00000017391)	gyg1b (ENSCVAG00000017408)	bdh1 (ENSCVAG00000017415)	NCK1 (ENSCVAG00000017428)	slc35g2b (ENSCVAG00000017437)	ENSCVAG00000017447	ENSCVAG00000017454 ##22	csrnp1b (ENSCVAG00000017459) ##28	ENSCVAG00000017475	slc22a13b (ENSCVAG00000017668)	slc22a13b (ENSCVAG00000017869)
Mummichog	MODERN SPECIES	2445										cpb1 (ENSFHEG00000013730)	gyg1b (ENSFHEG00000013712)	bdh1 (ENSFHEG00000013701)	NCK1 (ENSFHEG00000013683)	slc35g2b (ENSFHEG00000013668)	ENSFHEG00000000325	ENSFHEG00000013637 ##22	csrnp1b (ENSFHEG00000013628) ##28	ENSFHEG00000013612	slc22a13b (ENSFHEG00000013600)	ENSFHEG00000013591	slc22a13b (ENSFHEG00000013543)	oxsr1b (ENSFHEG00000000594)	myd88 (ENSFHEG00000013442)	cry-dash (ENSFHEG00000013427)	map3k22 (ENSFHEG00000013380)	ENSFHEG00000013280	ENSFHEG00000013269	plcd1a (ENSFHEG00000013255)	VILL (ENSFHEG00000013239)	ctdspla (ENSFHEG00000013227)	gars1 (ENSFHEG00000013189)
Ovalentaria_B	ANCESTRAL SPECIES	20	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Pomacentridae	ANCESTRAL SPECIES	11	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x.i	ENSGT00940000154607.b.a.x.j	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b
Bicolor damselfish	DUPLICATION
Bicolor damselfish	MODERN SPECIES	1896															GORASP1 (ENSSPAG00000019436)	ENSSPAG00000019410 ##22	ENSSPAG00000018583 ##22	csrnp1b (ENSSPAG00000018525) ##28	ENSSPAG00000018505	LIMD2 (ENSSPAG00000018490)	slc22a13b (ENSSPAG00000018436)
Bicolor damselfish	MODERN SPECIES	1896														GORASP1 (ENSSPAG00000019436)	ENSSPAG00000019410 ##22	ENSSPAG00000018583 ##22	csrnp1b (ENSSPAG00000018525) ##28	ENSSPAG00000018505	LIMD2 (ENSSPAG00000018490)	slc22a13b (ENSSPAG00000018436)
Pomacentridae_A	ANCESTRAL SPECIES	8	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x.i	ENSGT00940000154607.b.a.x.j	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b
Amphiprion	ANCESTRAL SPECIES	7	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000181016	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x.i.b	ENSGT00940000154607.b.a.x.j	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b
Clown anemonefish	MODERN SPECIES	790															GORASP1 (ENSAOCG00000020500)	ENSAOCG00000020564 ##22	csrnp1b (ENSAOCG00000020582) ##28	ENSAOCG00000020610	slc22a13b (ENSAOCG00000020677)	slc22a13b (ENSAOCG00000002232)	ENSAOCG00000020845	ARVCF (ENSAOCG00000020856)	BMP10 (ENSAOCG00000020890)	smad4a (ENSAOCG00000020944)	rfx3 (ENSAOCG00000021007)	glis3 (ENSAOCG00000021022)	UNC5C (ENSAOCG00000021129)
Orange clownfish	MODERN SPECIES	14	CHST2 (ENSAPEG00000016815)	SLC9A9 (ENSAPEG00000016845)	dipk2ab (ENSAPEG00000016993)	plod2 (ENSAPEG00000017014)	ENSAPEG00000017115	ENSAPEG00000017122	zic4 (ENSAPEG00000017132)	zic1 (ENSAPEG00000017143)	AGTR1 (ENSAPEG00000017182)	cpb1 (ENSAPEG00000017190)	gyg1b (ENSAPEG00000017210)	bdh1 (ENSAPEG00000017234)	NCK1 (ENSAPEG00000017248)	slc35g2b (ENSAPEG00000017261)	ENSAPEG00000017267	ENSAPEG00000017285 ##22	csrnp1b (ENSAPEG00000017300) ##28	ENSAPEG00000017326	slc22a13b (ENSAPEG00000017348)	LIMD2 (ENSAPEG00000017411)	slc22a13b (ENSAPEG00000017432)	slc22a13b (ENSAPEG00000017544)	slc22a13b (ENSAPEG00000017576)	oxsr1b (ENSAPEG00000017631)	myd88 (ENSAPEG00000017990)	cry-dash (ENSAPEG00000017999)	map3k22 (ENSAPEG00000018071)	ENSAPEG00000018173	plcd1a (ENSAPEG00000018217)	VILL (ENSAPEG00000018324)	ctdspla (ENSAPEG00000018781)
Spiny chromis	MODERN SPECIES	1113									AGTR1 (ENSAPOG00000014635)	cpb1 (ENSAPOG00000014766)	gyg1b (ENSAPOG00000014777)	bdh1 (ENSAPOG00000014787)	NCK1 (ENSAPOG00000000410)	slc35g2b (ENSAPOG00000014805)	ENSAPOG00000014814	ENSAPOG00000014831 ##22	csrnp1b (ENSAPOG00000014839) ##28	LIMD2 (ENSAPOG00000014848)	ENSAPOG00000014869
Cichlidae	ANCESTRAL SPECIES	18	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Pseudocrenilabrinae	ANCESTRAL SPECIES	20	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.x	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	19	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Haplochromini	ANCESTRAL SPECIES	21	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Burton s mouthbrooder	MODERN SPECIES	270	ENSHBUG00000015791	ENSHBUG00000015812	dipk2ab (ENSHBUG00000015830)	plod2 (ENSHBUG00000015944)	ENSHBUG00000015954	zic4 (ENSHBUG00000015971)	zic1 (ENSHBUG00000015990)	AGTR1 (ENSHBUG00000015996)	ENSHBUG00000016013	cpb1 (ENSHBUG00000016024)	gyg1b (ENSHBUG00000016049)	bdh1 (ENSHBUG00000016069)	NCK1 (ENSHBUG00000016086)	slc35g2b (ENSHBUG00000016099)	ENSHBUG00000016120	ENSHBUG00000016133 ##22	csrnp1b (ENSHBUG00000016137) ##28	ENSHBUG00000016141	slc22a13b (ENSHBUG00000016149)	oxsr1b (ENSHBUG00000016177)	myd88 (ENSHBUG00000016188)	cry-dash (ENSHBUG00000016224)	map3k22 (ENSHBUG00000016292)	ENSHBUG00000016318	plcd1a (ENSHBUG00000016342)	VILL (ENSHBUG00000016379)	ctdspla (ENSHBUG00000016416)	gars1 (ENSHBUG00000016481)	gars1 (ENSHBUG00000000815)	hhatlb (ENSHBUG00000016582)	klhl40b (ENSHBUG00000016591)
Haplochromini_A	ANCESTRAL SPECIES	21	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
P. nyererei	MODERN SPECIES	302	ENSPNYG00000006133	ENSPNYG00000006109	dipk2ab (ENSPNYG00000006091)	plod2 (ENSPNYG00000006024)	ENSPNYG00000006004	zic4 (ENSPNYG00000005991)	zic1 (ENSPNYG00000005972)	AGTR1 (ENSPNYG00000005957)	ENSPNYG00000005944	cpb1 (ENSPNYG00000005935)	gyg1b (ENSPNYG00000005874)	bdh1 (ENSPNYG00000005851)	NCK1 (ENSPNYG00000005834)	slc35g2b (ENSPNYG00000005806)	ENSPNYG00000005785	ENSPNYG00000005770 ##22	csrnp1b (ENSPNYG00000005761) ##28	ENSPNYG00000005672	LIMD2 (ENSPNYG00000005661)	slc22a13b (ENSPNYG00000005647)	oxsr1b (ENSPNYG00000005631)	myd88 (ENSPNYG00000005613)	cry-dash (ENSPNYG00000005507)	map3k22 (ENSPNYG00000005481)	ENSPNYG00000005356	plcd1a (ENSPNYG00000005315)	VILL (ENSPNYG00000005168)	ctdspla (ENSPNYG00000005093)	gars1 (ENSPNYG00000005017)	gars1 (ENSPNYG00000004960)	hhatlb (ENSPNYG00000004749)
Haplochromini_B	ANCESTRAL SPECIES	18	ENSGT01060000248594.f	ENSGT00940000161292	ENSGT00940000160094	ENSGT00520000055625.b	ENSGT01030000234558.A.a.b.i	ENSGT00940000165699.B	ENSGT00940000154200.B	ENSGT00940000160269	ENSGT01050000244888.b.a.c.b	ENSGT00940000157819	ENSGT00940000154674.q.b	ENSGT00940000156929	ENSGT00940000156601	ENSGT00940000153249.b.d.b	ENSGT00390000008686.c.d	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a.a.a ##28	ENSGT00530000063779.B.b	ENSGT00940000158377.b.i.a	ENSGT00940000154607.b.a.w	ENSGT00940000154621.a.b.b.a	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT00940000165361	ENSGT00390000006098	ENSGT00940000158392.e.b	ENSGT00940000160253	ENSGT01040000240451.a.b.b.a.b	ENSGT00940000153759.a.a.g	ENSGT00940000153759.a.a.h
Eastern happy	MODERN SPECIES	21	CHST2 (ENSACLG00000027469)	SLC9A9 (ENSACLG00000027463)	dipk2ab (ENSACLG00000027458)	plod2 (ENSACLG00000027422)	ENSACLG00000027409	zic4 (ENSACLG00000027396)	zic1 (ENSACLG00000027380)	ENSACLG00000027374	AGTR1 (ENSACLG00000027373)	cpb1 (ENSACLG00000027369)	gyg1b (ENSACLG00000027360)	bdh1 (ENSACLG00000027355)	NCK1 (ENSACLG00000027352)	slc35g2b (ENSACLG00000027351)	ENSACLG00000027345	ENSACLG00000027340 ##22	csrnp1b (ENSACLG00000027338) ##28	ENSACLG00000027332	slc22a13b (ENSACLG00000027330)	oxsr1b (ENSACLG00000027322)	myd88 (ENSACLG00000027319)	cry-dash (ENSACLG00000027299)	map3k22 (ENSACLG00000027280)	ENSACLG00000027269	plcd1a (ENSACLG00000027250)	VILL (ENSACLG00000027218)	ctdspla (ENSACLG00000027198)	gars1 (ENSACLG00000027174)	gars1 (ENSACLG00000027158)	hhatlb (ENSACLG00000027110)	klhl40b (ENSACLG00000027102)
Zebra mbuna	MODERN SPECIES	1112	bco1 (ENSMZEG00005017579)	ENSMZEG00005017592	zc2hc1a (ENSMZEG00005017598)	ENSMZEG00005017623	ENSMZEG00005017629	plod2 (ENSMZEG00005017645)	ENSMZEG00005017666	zic4 (ENSMZEG00005017675)	zic1 (ENSMZEG00005017681)	cpb1 (ENSMZEG00005017686)	gyg1b (ENSMZEG00005017698)	bdh1 (ENSMZEG00005017708)	NCK1 (ENSMZEG00005017711)	slc35g2b (ENSMZEG00005017714)	ENSMZEG00005017718	ENSMZEG00005017737 ##22	csrnp1b (ENSMZEG00005019565) ##28	ENSMZEG00005019573	LIMD2 (ENSMZEG00005019576)	slc22a13b (ENSMZEG00005019580)	oxsr1b (ENSMZEG00005019587)	myd88 (ENSMZEG00005019596)	cry-dash (ENSMZEG00005019606)	map3k22 (ENSMZEG00005019623)	DLEC1 (ENSMZEG00005019661)	plcd1a (ENSMZEG00005019702)	VILL (ENSMZEG00005019707)	ctdspla (ENSMZEG00005019717)	gars1 (ENSMZEG00005019740)	gars1 (ENSMZEG00005019754)	hhatlb (ENSMZEG00005019764)
Lyretail cichlid	MODERN SPECIES	325	ENSNBRG00000017362	dipk2ab (ENSNBRG00000017380)	ENSNBRG00000017392	ENSNBRG00000017398	plod2 (ENSNBRG00000017408)	ENSNBRG00000017440	zic4 (ENSNBRG00000017454)	zic1 (ENSNBRG00000017474)	AGTR1 (ENSNBRG00000017481)	cpb1 (ENSNBRG00000017488)	gyg1b (ENSNBRG00000017513)	bdh1 (ENSNBRG00000017529)	NCK1 (ENSNBRG00000017538)	slc35g2b (ENSNBRG00000017545)	GORASP1 (ENSNBRG00000017567)	ENSNBRG00000017652 ##22	csrnp1b (ENSNBRG00000017756) ##28	LIMD2 (ENSNBRG00000017764)	slc22a13b (ENSNBRG00000017787)	oxsr1b (ENSNBRG00000017887)	myd88 (ENSNBRG00000018166)	cry-dash (ENSNBRG00000018178)	map3k22 (ENSNBRG00000018214)	DLEC1 (ENSNBRG00000018276)	plcd1a (ENSNBRG00000018469)	VILL (ENSNBRG00000018493)	ctdspla (ENSNBRG00000018557)	gars1 (ENSNBRG00000018585)	gars1 (ENSNBRG00000018643)	hhatlb (ENSNBRG00000018666)	klhl40b (ENSNBRG00000018706)
Nile tilapia	MODERN SPECIES	21	trpc1 (ENSONIG00000005900)	CHST2 (ENSONIG00000020455)	SLC9A9 (ENSONIG00000005897)	dipk2ab (ENSONIG00000005895)	plod2 (ENSONIG00000005883)	ENSONIG00000005881	zic4 (ENSONIG00000035266)	zic1 (ENSONIG00000041800)	AGTR1 (ENSONIG00000033827)	cpb1 (ENSONIG00000005865)	bdh1 (ENSONIG00000005863)	NCK1 (ENSONIG00000005858)	slc35g2b (ENSONIG00000020453)	ENSONIG00000027784	GORASP1 (ENSONIG00000034188)	ENSONIG00000005850 ##22	csrnp1b (ENSONIG00000005849) ##28	ENSONIG00000039012	slc22a13b (ENSONIG00000031310)	slc22a13b (ENSONIG00000038660)	slc22a13b (ENSONIG00000005842)	oxsr1b (ENSONIG00000029738)	myd88 (ENSONIG00000005835)	cry-dash (ENSONIG00000005833)	map3k22 (ENSONIG00000005831)	ENSONIG00000005829	plcd1a (ENSONIG00000005823)	VILL (ENSONIG00000005814)	ctdspl (ENSONIG00000005811)	gars1 (ENSONIG00000005805)	hhatlb (ENSONIG00000005799)
Midas cichlid	MODERN SPECIES	363	trpc1 (ENSACIG00000018603)	CHST2 (ENSACIG00000018621)	SLC9A9 (ENSACIG00000018630)	dipk2ab (ENSACIG00000018657)	plod2 (ENSACIG00000018677)	ENSACIG00000018708	zic4 (ENSACIG00000018721)	zic1 (ENSACIG00000018732)	AGTR1 (ENSACIG00000018743)	cpb1 (ENSACIG00000018754)	gyg1b (ENSACIG00000018838)	bdh1 (ENSACIG00000018994)	NCK1 (ENSACIG00000019007)	slc35g2b (ENSACIG00000019015)	ENSACIG00000019027	ENSACIG00000019129 ##22	csrnp1b (ENSACIG00000019328) ##28	LIMD2 (ENSACIG00000019348)	slc22a13b (ENSACIG00000019358)	ENSACIG00000019372	oxsr1b (ENSACIG00000019381)	myd88 (ENSACIG00000019425)	cry-dash (ENSACIG00000020287)	map3k22 (ENSACIG00000020310)	DLEC1 (ENSACIG00000020341)	plcd1a (ENSACIG00000020428)	VILL (ENSACIG00000020649)	ctdspla (ENSACIG00000020718)	gars1 (ENSACIG00000020744)	gars1 (ENSACIG00000020797)	hhatlb (ENSACIG00000020837)
Cod	MODERN SPECIES	15	actr3b (ENSGMOG00000002876)	XRCC2 (ENSGMOG00000030367)	KMT2C (ENSGMOG00000032418)	galnt11 (ENSGMOG00000011270)	ENSGMOG00000001817	zic4 (ENSGMOG00000027121)	zic1 (ENSGMOG00000001788)	AGTR1 (ENSGMOG00000026261)	cpb1 (ENSGMOG00000001752)	gyg1b (ENSGMOG00000001733)	bdh1 (ENSGMOG00000001721)	ENSGMOG00000024071	slc35g2b (ENSGMOG00000019967)	ENSGMOG00000028987	ENSGMOG00000001587	ENSGMOG00000001440 ##22	csrnp1b (ENSGMOG00000026143) ##28	ENSGMOG00000023684	slc22a13b (ENSGMOG00000001379)	slc22a13b (ENSGMOG00000015289)	ENSGMOG00000025187	ENSGMOG00000036815	NRN1 (ENSGMOG00000035624)	fars2 (ENSGMOG00000015750)	ENSGMOG00000017921	ENSGMOG00000026283	cyb5a (ENSGMOG00000017931)	ENSGMOG00000030936	dipk1c (ENSGMOG00000009676)	tubb6 (ENSGMOG00000007552)	ENSGMOG00000034699
Otomorpha	ANCESTRAL SPECIES	183	ENSGT00940000161019	ENSGT00940000155020.u.a.b	ENSGT00940000165403	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000160677	ENSGT00940000154992.a.b	ENSGT01100000263681	ENSGT00940000163423.C.h	ENSGT00920000149157.d	ENSGT00390000008686.c.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00940000167861	ENSGT00940000160959	ENSGT01060000248931	ENSGT00940000154805.b.g.e.a	ENSGT00940000159742.sb	ENSGT00940000159846.a.b	ENSGT00940000155829	ENSGT00950000183207.a	ENSGT00940000157657.d	ENSGT00940000160837	ENSGT00940000158212.A	ENSGT00390000018540	ENSGT00940000156394	ENSGT00530000063186.b.a	ENSGT00390000015821
Otophysi	ANCESTRAL SPECIES	126	ENSGT00940000157124	ENSGT00940000161019	ENSGT00940000155020.u.a.b	ENSGT00940000165403	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000160677	ENSGT00940000154992.a.b	ENSGT00940000163423.C.h	ENSGT00920000149157.d	ENSGT00390000008686.c.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00940000167861	ENSGT00940000160959	ENSGT00940000154805.b.g.e.a	ENSGT00940000159742.sb	ENSGT00940000159846.a.b	ENSGT00940000155829	ENSGT00950000183207.a	ENSGT00940000157657.d	ENSGT00940000160837	ENSGT00940000158212.A	ENSGT00390000018540	ENSGT00950000182977.B.b.a.d.d	ENSGT00940000159846.a.a	ENSGT00940000157657.c	ENSGT00940000164061.c.a
Characiphysae	ANCESTRAL SPECIES		ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000157124	ENSGT00940000161019	ENSGT00940000155020.u.a.b	ENSGT00940000165403	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000160677	ENSGT00940000154992.a.b	ENSGT00920000149157.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00940000167861	ENSGT00940000160959	ENSGT00940000154805.b.g.e.a.e	ENSGT01060000248931	ENSGT00940000154805.b.g.e.a.f	ENSGT00940000159742.sb	ENSGT00940000159846.a.b	ENSGT00940000155829	ENSGT00950000183207.a	ENSGT00940000157657.d	ENSGT00940000160837	ENSGT00940000158212.A	ENSGT00390000018540	ENSGT00950000182977.B.b.a.d.d	ENSGT00940000156394
Characiphysae_b	ANCESTRAL SPECIES	2	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000157124	ENSGT00940000161019	ENSGT00940000155020.u.a.b	ENSGT00940000165403	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000160677	ENSGT00940000154992.a.b	ENSGT00920000149157.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00940000167861	ENSGT00940000160959	ENSGT00940000154805.b.g.e.a.e	ENSGT01060000248931	ENSGT00940000154805.b.g.e.a.f	ENSGT00940000159742.sb	ENSGT00940000159846.a.b	ENSGT00940000155829	ENSGT00950000183207.a	ENSGT00940000157657.d	ENSGT00940000160837
Characoidei	ANCESTRAL SPECIES	95	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000157124	ENSGT00940000161019.`c	ENSGT00940000155020.u.a.b	ENSGT00940000165403	ENSGT00940000159301.c.a	ENSGT00390000010557	ENSGT00940000174963	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000160677	ENSGT00940000154992.a.b	ENSGT00920000149157.d	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00940000167861	ENSGT00940000160959	ENSGT00940000154805.b.g.e.a.e	ENSGT00940000154805.b.g.e.a.f	ENSGT01060000248931	ENSGT00940000159742.sb	ENSGT00940000159846.a.b	ENSGT00940000155829	ENSGT00950000183207.a	ENSGT00940000157657.d	ENSGT00940000160837	ENSGT00500000044936	ENSGT00530000063692.a	ENSGT00940000154697.a.a.b	ENSGT00390000015035
Red-bellied piranha	MODERN SPECIES	200										acvr2ba (ENSPNAG00000027259)	EXOG (ENSPNAG00000027216)	scn5lab (ENSPNAG00000005899)	ENSPNAG00000027152	wdr48a (ENSPNAG00000027133)	TTC21A (ENSPNAG00000027033)	ENSPNAG00000027013 ##22	cebp1 (ENSPNAG00000026993)	ENSPNAG00000026980	ENSPNAG00000026917	ENSPNAG00000004100	ENSPNAG00000026734	ENSPNAG00000026704	ENSPNAG00000026549	MYH6 (ENSPNAG00000026307)	ENSPNAG00000022827	KCNH2 (ENSPNAG00000022778)	ENSPNAG00000022666	aoc1 (ENSPNAG00000022370)	SLC12A7 (ENSPNAG00000022341)	GFOD1 (ENSPNAG00000022248)	ENSPNAG00000022222
Mexicana tetra	MODERN SPECIES	1	ENSAMXG00000043263	ENSAMXG00000040068	ndufs4 (ENSAMXG00000043878)	ndufs4 (ENSAMXG00000026497)	ndufs4 (ENSAMXG00000029870)	mettl6 (ENSAMXG00000038225)	sh3bp5b (ENSAMXG00000018745)	capn7 (ENSAMXG00000018580)	NUB1 (ENSAMXG00000037927)	xylb (ENSAMXG00000021399)	acvr2ba (ENSAMXG00000021386)	EXOG (ENSAMXG00000033038)	scn5lab (ENSAMXG00000021379)	wdr48a (ENSAMXG00000021376)	TTC21A (ENSAMXG00000013115)	ENSAMXG00000038780 ##22	cebp1 (ENSAMXG00000034839)	ENSAMXG00000013083	ENSAMXG00000042771	MYH6 (ENSAMXG00000012723)	ENSAMXG00000035701	ENSAMXG00000034088	ENSAMXG00000037185	ENSAMXG00000035550	ENSAMXG00000040694	KCNH2 (ENSAMXG00000012460)	ENSAMXG00000012126	ENSAMXG00000040465	aoc1 (ENSAMXG00000012011)	SLC12A7 (ENSAMXG00000011972)	GFOD1 (ENSAMXG00000011955)
Channel catfish	MODERN SPECIES		lama1 (ENSIPUG00000024514)	ENSIPUG00000024517	Ptprm (ENSIPUG00000024537)	ENSIPUG00000024568	crygn2 (ENSIPUG00000024570)	ENSIPUG00000024574	ENSIPUG00000024578	ENSIPUG00000024584	xylb (ENSIPUG00000024699)	ENSIPUG00000024709	acvr2b (ENSIPUG00000024714)	exog (ENSIPUG00000024721)	scn5lab (ENSIPUG00000024742)	wdr48 (ENSIPUG00000024758)	ttc21a (ENSIPUG00000024770)	ENSIPUG00000024773 ##22	cebp1 (ENSIPUG00000024776)	slc22a17 (ENSIPUG00000024778)	ENSIPUG00000024782	MYH6 (ENSIPUG00000024786)	ENSIPUG00000024796	ENSIPUG00000024799	ENSIPUG00000024821	ENSIPUG00000024831	kcnh2 (ENSIPUG00000024833)	ENSIPUG00000024850	ENSIPUG00000024863	aoc1 (ENSIPUG00000024864)	SLC12A7 (ENSIPUG00000024870)	GFOD1 (ENSIPUG00000024884)	ENSIPUG00000024891
Spotted gar	MODERN SPECIES	675	ENSLOCG00000010044	PHLPP1 (ENSLOCG00000010026)	si:ch211-191a24.4 (ENSLOCG00000010018)	ENSLOCG00000010004	crygn1 (ENSLOCG00000009994)	WDR86 (ENSLOCG00000009989)	NUB1 (ENSLOCG00000009978)	ENSLOCG00000009971	xylb (ENSLOCG00000009962)	acvr2ba (ENSLOCG00000009939)	EXOG (ENSLOCG00000009933)	scn12aa (ENSLOCG00000009914)	wdr48b (ENSLOCG00000009906)	gorasp1a (ENSLOCG00000009900)	TTC21A (ENSLOCG00000009893)	ENSLOCG00000009870 ##22	csrnp1b (ENSLOCG00000009861) ##28	xirp1 (ENSLOCG00000009850)	ENSLOCG00000009841	slc22a13b (ENSLOCG00000009828)	oxsr1a (ENSLOCG00000009820)	myd88 (ENSLOCG00000009811)	cry-dash (ENSLOCG00000009796)	map3k22 (ENSLOCG00000009780)	acaa1 (ENSLOCG00000009768)	DLEC1 (ENSLOCG00000009757)	ENSLOCG00000009753	plcd1a (ENSLOCG00000009737)	VILL (ENSLOCG00000009718)	ctdsplb (ENSLOCG00000009706)	gars1 (ENSLOCG00000009688)
Reedfish	DUPLICATION
Reedfish	MODERN SPECIES	14	itgb1b (ENSECRG00000004926)	nrp1a (ENSECRG00000004904)	ENSECRG00000004897	ENSECRG00000004829	CUL2 (ENSECRG00000004747)	CREM (ENSECRG00000004730)	CCNY (ENSECRG00000004706)	GJD4 (ENSECRG00000004690)	fzd8a (ENSECRG00000004680)	klf6a (ENSECRG00000004672)	pitrm1 (ENSECRG00000004644)	PFKP (ENSECRG00000004490)	ADARB2 (ENSECRG00000004402)	wdr37 (ENSECRG00000004364)	ENSECRG00000004343 ##22	ENSECRG00000004328 ##22	csrnp1b (ENSECRG00000004319) ##28	xirp1 (ENSECRG00000004310)	ENSECRG00000004302	slc22a13b (ENSECRG00000004285)	oxsr1a (ENSECRG00000004264)	myd88 (ENSECRG00000004252)	cry-dash (ENSECRG00000004240)	map3k22 (ENSECRG00000004219)	klhl18 (ENSECRG00000004180)	GFOD1 (ENSECRG00000004165)	ENSECRG00000004147	ENSECRG00000004134	RECK (ENSECRG00000004099)	tgfbr1a (ENSECRG00000004040)	lancl2 (ENSECRG00000004016)
Reedfish	MODERN SPECIES	14	idi1 (ENSECRG00000004942)	itgb1b (ENSECRG00000004926)	nrp1a (ENSECRG00000004904)	ENSECRG00000004897	ENSECRG00000004829	CUL2 (ENSECRG00000004747)	CREM (ENSECRG00000004730)	CCNY (ENSECRG00000004706)	GJD4 (ENSECRG00000004690)	fzd8a (ENSECRG00000004680)	klf6a (ENSECRG00000004672)	pitrm1 (ENSECRG00000004644)	PFKP (ENSECRG00000004490)	ADARB2 (ENSECRG00000004402)	wdr37 (ENSECRG00000004364)	ENSECRG00000004343 ##22	ENSECRG00000004328 ##22	csrnp1b (ENSECRG00000004319) ##28	xirp1 (ENSECRG00000004310)	ENSECRG00000004302	slc22a13b (ENSECRG00000004285)	oxsr1a (ENSECRG00000004264)	myd88 (ENSECRG00000004252)	cry-dash (ENSECRG00000004240)	map3k22 (ENSECRG00000004219)	klhl18 (ENSECRG00000004180)	GFOD1 (ENSECRG00000004165)	ENSECRG00000004147	ENSECRG00000004134	RECK (ENSECRG00000004099)	tgfbr1a (ENSECRG00000004040)
Sarcopterygii	ANCESTRAL SPECIES		ENSGT00940000165841	ENSGT00950000183019.f.a	ENSGT00940000165403	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00940000179410	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b	ENSGT00940000153759.a.a
Tetrapoda	ANCESTRAL SPECIES	7	ENSGT00940000155281	ENSGT00940000158227	ENSGT00950000183019.f.a	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600
Amniota	ANCESTRAL SPECIES	7	ENSGT00950000183019.f.a	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT01030000235508	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795	ENSGT00940000159600
Sauria	ANCESTRAL SPECIES	15	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a.b	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a
Archosauria	ANCESTRAL SPECIES		ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d
Aves	ANCESTRAL SPECIES	5	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d
African ostrich	MODERN SPECIES	193	PRKAG2 (ENSSCUG00000001393)	RHEB (ENSSCUG00000001388)	CRYGN (ENSSCUG00000001383)	NUB1 (ENSSCUG00000001380)	C9orf152 (ENSSCUG00000001379)	XYLB (ENSSCUG00000001372)	ACVR2B (ENSSCUG00000001362)	EXOG (ENSSCUG00000001359)	ENSSCUG00000001338	ENSSCUG00000001322	ENSSCUG00000001315	ENSSCUG00000001308	WDR48 (ENSSCUG00000001301)	GORASP1 (ENSSCUG00000001294)	TTC21A (ENSSCUG00000001291)	ENSSCUG00000001287 ##22	CSRNP1 (ENSSCUG00000001282) ##28	XIRP1 (ENSSCUG00000001273)	SLC22A13 (ENSSCUG00000001271)	ENSSCUG00000001264	MYD88 (ENSSCUG00000001261)
Neognathae	ANCESTRAL SPECIES		ENSGT00950000183019.f.a	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00950000183019.f.a	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a.a.d	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT01100000266186	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a.a.c	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT01100000263521.a.a.a.a
Golden eagle	MODERN SPECIES	19	RHEB (ENSACCG00020003157)	CRYGN (ENSACCG00020003178)	WDR86 (ENSACCG00020003190)	NUB1 (ENSACCG00020003205)	C9orf152 (ENSACCG00020003218)	XYLB (ENSACCG00020003246)	ACVR2B (ENSACCG00020003300)	EXOG (ENSACCG00020003324)	ENSACCG00020003340	ENSACCG00020003381	ENSACCG00020003412	ENSACCG00020003428	WDR48 (ENSACCG00020003453)	GORASP1 (ENSACCG00020003474)	ENSACCG00020003485	ENSACCG00020003508 ##22	CSRNP1 (ENSACCG00020003528) ##28	XIRP1 (ENSACCG00020003537)	SLC22A13 (ENSACCG00020003547)	OXSR1 (ENSACCG00020003561)	MYD88 (ENSACCG00020003581)	ENSACCG00020003602	ENSACCG00020003619	ACAA1 (ENSACCG00020011457)	DLEC1 (ENSACCG00020011507)	PLCD1 (ENSACCG00020011669)	ENSACCG00020011717	VILL (ENSACCG00020011741)	CTDSPL (ENSACCG00020011793)	GARS1 (ENSACCG00020011850)	ENSACCG00020012206
Australian saltwater crocodile	MODERN SPECIES		KMT2C (ENSCPRG00005004866)	GALNT11 (ENSCPRG00005004779)	PRKAG2 (ENSCPRG00005004752)	CRYGN (ENSCPRG00005004686)	WDR86 (ENSCPRG00005004680)	NUB1 (ENSCPRG00005004657)	ENSCPRG00005004619	XYLB (ENSCPRG00005004595)	ACVR2B (ENSCPRG00005004570)	EXOG (ENSCPRG00005004567)	ENSCPRG00005004490	SCN10A (ENSCPRG00005004022)	WDR48 (ENSCPRG00005003964)	GORASP1 (ENSCPRG00005003956)	TTC21A (ENSCPRG00005003780)	ENSCPRG00005003764 ##22	CSRNP1 (ENSCPRG00005003763) ##28	SLC22A13 (ENSCPRG00005003671)	OXSR1 (ENSCPRG00005003415)	MYD88 (ENSCPRG00005003358)	ENSCPRG00005003351	ACAA1 (ENSCPRG00005003330)	DLEC1 (ENSCPRG00005003285)	ENSCPRG00005003275	PLCD1 (ENSCPRG00005003264)	VILL (ENSCPRG00005003212)	CTDSPL (ENSCPRG00005003172)	GARS1 (ENSCPRG00005003127)	ENSCPRG00005003126	ENSCPRG00005003125	ENSCPRG00005003076
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00940000159945	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b	ENSGT00940000154992.b.a.a.a.b	ENSGT00940000154992.b.a.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b.e	ENSGT00940000154992.b.a.a.a.b	ENSGT00940000154992.b.a.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a.h	ENSGT00390000005979.a.g	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.b	ENSGT00940000154607.b.a.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d
Emydidae	ANCESTRAL SPECIES	35	ENSGT00940000159301	ENSGT00940000161049	ENSGT00390000010557	ENSGT00390000005322	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000154992.b.a.b.e	ENSGT00940000154992.b.a.a.a.b	ENSGT00940000154992.b.a.a.a.a	ENSGT00940000154992.b.a.a.b	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a.h	ENSGT00390000005979.a.g	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00950000183580	ENSGT00940000154607.b.a.a.b	ENSGT00940000154607.b.a.a.a	ENSGT00940000162134	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000165167	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d
painted turtle	MODERN SPECIES	2396	WDR86 (ENSCPBG00000018290)	NUB1 (ENSCPBG00000018292)	C9orf152 (ENSCPBG00000018293)	XYLB (ENSCPBG00000018294)	ENSCPBG00000018298	ACVR2B (ENSCPBG00000018300)	EXOG (ENSCPBG00000018302)	ENSCPBG00000018304	ENSCPBG00000018323	ENSCPBG00000018370	ENSCPBG00000018397	WDR48 (ENSCPBG00000018406)	GORASP1 (ENSCPBG00000018410)	ENSCPBG00000018411	ENSCPBG00000018417	ENSCPBG00000018426 ##22	CSRNP1 (ENSCPBG00000018430) ##28	ENSCPBG00000018433	ENSCPBG00000018437	ENSCPBG00000018444	ENSCPBG00000018454	ENSCPBG00000018459	OXSR1 (ENSCPBG00000018467)	MYD88 (ENSCPBG00000018478)	ENSCPBG00000018481	ENSCPBG00000018484	ENSCPBG00000018489	ACAA1 (ENSCPBG00000018494)	DLEC1 (ENSCPBG00000018504)	PLCD1 (ENSCPBG00000018523)	VILL (ENSCPBG00000018691)
Three-toed box turtle	MODERN SPECIES	48	ENSTMTG00000015122	PRKAG2 (ENSTMTG00000015103)	RHEB (ENSTMTG00000015095)	CRYGN (ENSTMTG00000015082)	WDR86 (ENSTMTG00000015059)	NUB1 (ENSTMTG00000014982)	ENSTMTG00000014969	XYLB (ENSTMTG00000014948)	ACVR2B (ENSTMTG00000014931)	EXOG (ENSTMTG00000014826)	ENSTMTG00000014759	SCN10A (ENSTMTG00000011964)	WDR48 (ENSTMTG00000011686)	GORASP1 (ENSTMTG00000011663)	TTC21A (ENSTMTG00000011596)	ENSTMTG00000011509 ##22	CSRNP1 (ENSTMTG00000011498) ##28	ENSTMTG00000011481	ENSTMTG00000011474	ENSTMTG00000011455	ENSTMTG00000011405	ENSTMTG00000011229	OXSR1 (ENSTMTG00000011179)	ENSTMTG00000011162	ENSTMTG00000011114	ACAA1 (ENSTMTG00000011065)	DLEC1 (ENSTMTG00000010936)	PLCD1 (ENSTMTG00000010764)	VILL (ENSTMTG00000010154)	CTDSPL (ENSTMTG00000010066)	GARS1 (ENSTMTG00000009066)
Chinese turtle	MODERN SPECIES	878			XYLB (ENSPSIG00000007457)	ENSPSIG00000008247	ACVR2B (ENSPSIG00000008392)	EXOG (ENSPSIG00000009009)	ENSPSIG00000009061	ENSPSIG00000009113	ENSPSIG00000009308	ENSPSIG00000009316	ENSPSIG00000010955	ENSPSIG00000013903	WDR48 (ENSPSIG00000004103)	GORASP1 (ENSPSIG00000004490)	TTC21A (ENSPSIG00000004609)	ENSPSIG00000005642 ##22	XIRP1 (ENSPSIG00000006262)	ENSPSIG00000000743 ##28	ENSPSIG00000006561	MYD88 (ENSPSIG00000008175)	ENSPSIG00000008379	ENSPSIG00000008546	ACAA1 (ENSPSIG00000010862)	DLEC1 (ENSPSIG00000012059)	PLCD1 (ENSPSIG00000006467)	VILL (ENSPSIG00000008538)	CTDSPL (ENSPSIG00000010586)	GARS1 (ENSPSIG00000010935)	ENSPSIG00000000760	ENSPSIG00000000780	CRHR2 (ENSPSIG00000013384)
Mammalia	ANCESTRAL SPECIES	93						ENSGT00940000179410	ENSGT01000000214434.D	ENSGT00940000156210	ENSGT00940000160677	ENSGT00940000161691	ENSGT00940000154992.b	ENSGT00940000161553	ENSGT00920000149157	ENSGT00390000008686.c	ENSGT00390000005979.a	ENSGT01030000234528.B.b.a.a.b ##22	ENSGT00950000183072.a ##28	ENSGT00530000063779.B	ENSGT00940000154607.b.a	ENSGT00940000162134	ENSGT00940000154621.a.b	ENSGT00510000048324	ENSGT01070000253936	ENSGT00940000164858	ENSGT01030000234626.C	ENSGT00390000006098	ENSGT00940000158392	ENSGT00940000160253	ENSGT01040000240451.a.b.b.d	ENSGT00940000153759.a.a	ENSGT00940000156795
Platypus	MODERN SPECIES	4								XYLB (ENSOANG00000022615)	ACVR2B (ENSOANG00000037493)	SCN5A (ENSOANG00000051243)	SCN10A (ENSOANG00000005021)	SCN11A (ENSOANG00000009843)	WDR48 (ENSOANG00000009844)	ENSOANG00000009845	TTC21A (ENSOANG00000009846)	ENSOANG00000009848 ##22	ENSOANG00000048090 ##28	ENSOANG00000043093	ENSOANG00000039467	ENSOANG00000000383	ENSOANG00000000384	MYD88 (ENSOANG00000001175)	ENSOANG00000006423	ACAA1 (ENSOANG00000043694)	ENSOANG00000010795	PLCD1 (ENSOANG00000005661)	VILL (ENSOANG00000011776)	CTDSPL (ENSOANG00000015802)	GARS1 (ENSOANG00000006262)	CRHR2 (ENSOANG00000008095)	INMT (ENSOANG00000047781)
Coelacanth	DUPLICATION
Coelacanth	MODERN SPECIES	1274															ENSLACG00000012163 ##22	ENSLACG00000011899 ##22	TTC21A (ENSLACG00000010830)	GORASP1 (ENSLACG00000010228)	WDR48 (ENSLACG00000007679)	ENSLACG00000006516	ENSLACG00000000971
Coelacanth	MODERN SPECIES	1274										ENSLACG00000000971	ENSLACG00000006516	WDR48 (ENSLACG00000007679)	GORASP1 (ENSLACG00000010228)	TTC21A (ENSLACG00000010830)	ENSLACG00000011899 ##22	ENSLACG00000012163 ##22