Gnathostomata	ANCESTRAL SPECIES																	ENSGT00940000158304 #22
Euteleostomi	ANCESTRAL SPECIES	2	ENSGT00920000149157	ENSGT00940000154992.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000165403	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Sarcopterygii	ANCESTRAL SPECIES		ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00940000165403	ENSGT00950000183019.f.a #17	ENSGT00940000165841	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Tetrapoda	ANCESTRAL SPECIES	7	ENSGT00920000149157	ENSGT00940000154992.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Amniota	ANCESTRAL SPECIES	7	ENSGT00940000161691	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a
Mammalia	ANCESTRAL SPECIES	4	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a
Theria	ANCESTRAL SPECIES		ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a
Eutheria	ANCESTRAL SPECIES	1	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a
Boreoeutheria	ANCESTRAL SPECIES	13	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A
Euarchontoglires	ANCESTRAL SPECIES	13	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Primates	ANCESTRAL SPECIES	12	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Haplorrhini	ANCESTRAL SPECIES	8	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Simiiformes	ANCESTRAL SPECIES	12	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Platyrrhini	ANCESTRAL SPECIES	10	ENSGT00940000154067.d #8	ENSGT00630000089910.ib.a #9	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h.ab.a.a.a
Cebidae	ANCESTRAL SPECIES	9	ENSGT00940000154067.d #8	ENSGT00630000089910.ib.a #9	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h.ab.a.a.a
Cebidae_a	ANCESTRAL SPECIES	33	ENSGT00940000154365.a.a	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910.ib.a #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h.ab.a.a.a
Bolivian squirrel monkey	MODERN SPECIES	77	ASB10 (ENSSBOG00000003210) #7	IQCA1L (ENSSBOG00000026639) #8	ENSSBOG00000028832 #9	CHPF2 (ENSSBOG00000001266) #10	SMARCD3 (ENSSBOG00000021515) #11	NUB1 (ENSSBOG00000022146) #12	ENSSBOG00000029952 #13	WDR86 (ENSSBOG00000028778) #14	CRYGN (ENSSBOG00000025976) #15	ENSSBOG00000035032 #16	PRKAG2 (ENSSBOG00000022161) #17	GALNTL5 (ENSSBOG00000033497) #18	GALNT11 (ENSSBOG00000035670) #19	KMT2C (ENSSBOG00000033683) #20	XRCC2 (ENSSBOG00000020967) #21	ACTR3B (ENSSBOG00000021181) #22	ENSSBOG00000031907 #23
Capuchin	MODERN SPECIES	20	ASB10 (ENSCCAG00000027699) #7	IQCA1L (ENSCCAG00000034173) #8	ENSCCAG00000024749 #9	CHPF2 (ENSCCAG00000038042) #10	SMARCD3 (ENSCCAG00000022778) #11	NUB1 (ENSCCAG00000021978) #12	WDR86 (ENSCCAG00000033100) #14	ENSCCAG00000020407 #15	RHEB (ENSCCAG00000030751) #16	PRKAG2 (ENSCCAG00000029818) #17	GALNTL5 (ENSCCAG00000030227) #18	GALNT11 (ENSCCAG00000026999) #19	KMT2C (ENSCCAG00000035578) #20	ENSCCAG00000029518	XRCC2 (ENSCCAG00000031051) #21	ACTR3B (ENSCCAG00000019061) #22	DPP6 (ENSCCAG00000038118) #23	PAXIP1 (ENSCCAG00000032704)	HTR5A (ENSCCAG00000037605)	INSIG1 (ENSCCAG00000028779)	EN2 (ENSCCAG00000035505)	ENSCCAG00000026142	RBM33 (ENSCCAG00000033957)	SHH (ENSCCAG00000034451)	ENSCCAG00000025580	RNF32 (ENSCCAG00000031451)	LMBR1 (ENSCCAG00000025726)	NOM1 (ENSCCAG00000014944)	MNX1 (ENSCCAG00000021938)	UBE3C (ENSCCAG00000020983)	ENSCCAG00000034700
Marmoset	MODERN SPECIES	20	ABCF2 (ENSCJAG00000020371) ##9	CHPF2 (ENSCJAG00000020380) #10	SMARCD3 (ENSCJAG00000020387) #11	NUB1 (ENSCJAG00000020400) #12	WDR86 (ENSCJAG00000020408) #14	ENSCJAG00000083257	RHEB (ENSCJAG00000042669) #16	PRKAG2 (ENSCJAG00000020422) #17	GALNTL5 (ENSCJAG00000019740) #18	GALNT11 (ENSCJAG00000019732) #19	ENSCJAG00000044829	KMT2C (ENSCJAG00000019672) #20	XRCC2 (ENSCJAG00000032080) #21	ENSCJAG00000085430	ENSCJAG00000071228	ACTR3B (ENSCJAG00000019650) #22	ENSCJAG00000082850 #23	DPP6 (ENSCJAG00000000167) #23	PAXIP1 (ENSCJAG00000000161)	HTR5A (ENSCJAG00000083175)	ENSCJAG00000073273	INSIG1 (ENSCJAG00000018517)	EN2 (ENSCJAG00000080094)	ENSCJAG00000045734	ENSCJAG00000053198	RBM33 (ENSCJAG00000020427)	SHH (ENSCJAG00000020423)	ENSCJAG00000080466	RNF32 (ENSCJAG00000004357)	LMBR1 (ENSCJAG00000004344)	ENSCJAG00000079983
Mas night monkey	MODERN SPECIES	981	IQCA1L (ENSANAG00000033798) #8	ENSANAG00000034117 #9	CHPF2 (ENSANAG00000028707) #10	SMARCD3 (ENSANAG00000018566) #11	NUB1 (ENSANAG00000031740) #12	WDR86 (ENSANAG00000020316) #14	ENSANAG00000031636 #15	RHEB (ENSANAG00000022525) #16	ENSANAG00000032579 #17	GALNTL5 (ENSANAG00000032581) #18	GALNT11 (ENSANAG00000019352) #19	ENSANAG00000032396	KMT2C (ENSANAG00000026517) #20	CCT8L2 (ENSANAG00000003264)	XRCC2 (ENSANAG00000028287) #21	ACTR3B (ENSANAG00000033359) #22
Catarrhini	DUPLICATION
Catarrhini	DUPLICATION
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Gorilla	MODERN SPECIES	17	LAMTOR3 (ENSGGOG00000001132)	DNAJB14 (ENSGGOG00000000153)	ENSGGOG00000027801	ENSGGOG00000038942	DDIT4L (ENSGGOG00000042118)	EMCN (ENSGGOG00000003574)	PPP3CA (ENSGGOG00000006762)	BANK1 (ENSGGOG00000012262)	SLC39A8 (ENSGGOG00000002889)	NFKB1 (ENSGGOG00000009071)	MANBA (ENSGGOG00000009746)	ENSGGOG00000013429	UBE2D3 (ENSGGOG00000010832)	ENSGGOG00000001371	ENSGGOG00000028384	ENSGGOG00000023500 #22	SLC9B2 (ENSGGOG00000014260)	BDH2 (ENSGGOG00000006381)	CENPE (ENSGGOG00000015064)	ENSGGOG00000043280	TACR3 (ENSGGOG00000002584)	ENSGGOG00000036842	ENSGGOG00000028495	TET2 (ENSGGOG00000024687)	PPA2 (ENSGGOG00000002175)	ENSGGOG00000037035	ENSGGOG00000040418	ENSGGOG00000011388	ENSGGOG00000027331	INTS12 (ENSGGOG00000013501)	GSTCD (ENSGGOG00000017102)
Cercopithecidae	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Cercopithecinae	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Cercopithecinae_a	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Macaca	ANCESTRAL SPECIES																	ENSGT00940000158304.m.a #22
Pig-tailed macaque	MODERN SPECIES	126	DAPP1 (ENSMNEG00000045303)	LAMTOR3 (ENSMNEG00000033312)	DNAJB14 (ENSMNEG00000035915)	ENSMNEG00000036937	DDIT4L (ENSMNEG00000040634)	EMCN (ENSMNEG00000033602)	PPP3CA (ENSMNEG00000036863)	BANK1 (ENSMNEG00000045046)	SLC39A8 (ENSMNEG00000025853)	NFKB1 (ENSMNEG00000029847)	ENSMNEG00000032895	ENSMNEG00000027952	MANBA (ENSMNEG00000040770)	ENSMNEG00000029341	CISD2 (ENSMNEG00000041045)	ENSMNEG00000027081 #22	SLC9B1 (ENSMNEG00000037351)	SLC9B2 (ENSMNEG00000044785)	BDH2 (ENSMNEG00000029165)	CENPE (ENSMNEG00000040148)	ENSMNEG00000018206	TACR3 (ENSMNEG00000033579)	CXXC4 (ENSMNEG00000038974)	ENSMNEG00000016504	TET2 (ENSMNEG00000032282)	PPA2 (ENSMNEG00000043169)	ENSMNEG00000028407	ARHGEF38 (ENSMNEG00000029734)	INTS12 (ENSMNEG00000043289)	GSTCD (ENSMNEG00000032450)	NPNT (ENSMNEG00000030807)
Catarrhini	ANCESTRAL SPECIES																	ENSGT00940000158304.m.b #22
Hominoidea	ANCESTRAL SPECIES																	ENSGT00940000158304.m.b #22
Hominidae	ANCESTRAL SPECIES																	ENSGT00940000158304.m.b #22
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00530000064074.b	ENSGT00940000154844	ENSGT00940000161272	ENSGT00940000163457	ENSGT00940000162548	ENSGT00940000159317	ENSGT00940000159509	ENSGT00940000155390.b	ENSGT00940000162462	ENSGT01030000234781	ENSGT00940000154411.`b.i.f	ENSGT00940000162588	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000158304.m.b #22	ENSGT00940000162476	ENSGT00940000162620	ENSGT00940000162497	ENSGT00390000006211	ENSGT00940000161747	ENSGT00910000147008	ENSGT00940000155153.B	ENSGT00940000162942	ENSGT00940000162364	ENSGT00940000161885	ENSGT00940000161603	ENSGT00940000163692	ENSGT00940000162604	ENSGT00940000157738	ENSGT00940000155013
Gorilla	MODERN SPECIES	20	TMEM176A (ENSGGOG00000016497)	TMEM176B (ENSGGOG00000016490)	ENSGGOG00000040664	ENSGGOG00000014216	GIMAP2 (ENSGGOG00000022230)	GIMAP6 (ENSGGOG00000000613)	GIMAP4 (ENSGGOG00000002351)	GIMAP7 (ENSGGOG00000002349)	ENSGGOG00000037430	GIMAP8 (ENSGGOG00000025687)	ENSGGOG00000038193	ZNF775 (ENSGGOG00000016629)	ENSGGOG00000043418	RARRES2 (ENSGGOG00000011158)	ENSGGOG00000043057	ENSGGOG00000034843 #22	ENSGGOG00000006898	ZNF862 (ENSGGOG00000011355)	ZNF467 (ENSGGOG00000011227)	KRBA1 (ENSGGOG00000003239)	ZNF746 (ENSGGOG00000015841)	ENSGGOG00000044051	ZNF777 (ENSGGOG00000016445)	ZNF783 (ENSGGOG00000038588)	ZNF212 (ENSGGOG00000006463)	ZNF282 (ENSGGOG00000043454)	ZNF398 (ENSGGOG00000005812)	ZNF425 (ENSGGOG00000007352)	ZNF786 (ENSGGOG00000009193)	PDIA4 (ENSGGOG00000025069)	EZH2 (ENSGGOG00000014846)
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT00530000064074.b	ENSGT00940000154844	ENSGT00940000161272	ENSGT00940000163457	ENSGT00940000162548	ENSGT00940000159317	ENSGT00940000159509	ENSGT00940000155390.b	ENSGT00940000162462	ENSGT01030000234781	ENSGT00940000154411.`b.i.f	ENSGT00940000162588	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000158304.m.b #22	ENSGT00940000162476	ENSGT00940000162620	ENSGT00940000162497	ENSGT00390000006211	ENSGT00940000161747	ENSGT00910000147008	ENSGT00940000155153.B	ENSGT00940000162942	ENSGT00940000162364	ENSGT00940000161885	ENSGT00940000161603	ENSGT00940000163692	ENSGT00940000162604	ENSGT00940000157738	ENSGT00940000155013
Pan	ANCESTRAL SPECIES	13	ENSGT00530000064074.a	ENSGT00530000064074.b	ENSGT00940000154844	ENSGT00940000163457	ENSGT00940000162548	ENSGT00940000159317	ENSGT00940000159509	ENSGT00940000155390.b	ENSGT00940000162462	ENSGT01030000234781	ENSGT00940000154411.`b.i.f	ENSGT00940000162588	ENSGT00390000016226	ENSGT00390000006479	ENSGT00510000050353	ENSGT00940000158304.m.b #22	ENSGT00940000162476	ENSGT00940000162620	ENSGT00940000162497	ENSGT00390000006211.a	ENSGT00940000161747	ENSGT00910000147008	ENSGT00940000155153.B	ENSGT00940000162942	ENSGT00940000162364	ENSGT00940000161885	ENSGT00940000161603	ENSGT00940000163692	ENSGT00940000162604	ENSGT00940000157738	ENSGT00940000155013
Chimpanzee	MODERN SPECIES	20	AOC1 (ENSPTRG00000019866)	TMEM176A (ENSPTRG00000019865)	TMEM176B (ENSPTRG00000019863)	ENSPTRG00000049050	GIMAP1 (ENSPTRG00000034465)	GIMAP2 (ENSPTRG00000028357)	GIMAP6 (ENSPTRG00000019860)	GIMAP4 (ENSPTRG00000019859)	GIMAP7 (ENSPTRG00000019858)	ENSPTRG00000048524	ENSPTRG00000046210	REPIN1 (ENSPTRG00000033818)	RARRES2 (ENSPTRG00000019854)	LRRC61 (ENSPTRG00000019852)	ENSPTRG00000045961	ENSPTRG00000046242 #22	ATP6V0E2 (ENSPTRG00000019850)	ZNF862 (ENSPTRG00000019848)	ZNF467 (ENSPTRG00000019839)	KRBA1 (ENSPTRG00000019846)	ZNF746 (ENSPTRG00000028361)	ZNF777 (ENSPTRG00000023754)	ZNF783 (ENSPTRG00000019845)	ZNF212 (ENSPTRG00000019842)	ZNF282 (ENSPTRG00000019841)	ZNF398 (ENSPTRG00000023917)	ZNF425 (ENSPTRG00000028363)	ZNF786 (ENSPTRG00000022947)	PDIA4 (ENSPTRG00000019838)	EZH2 (ENSPTRG00000019837)	CUL1 (ENSPTRG00000019836)
Human	MODERN SPECIES	19	TMEM176A (ENSG00000002933)	TMEM176B (ENSG00000106565)	GIMAP5 (ENSG00000196329)	GIMAP1-GIMAP5 (ENSG00000281887)	GIMAP1 (ENSG00000213203)	GIMAP2 (ENSG00000106560)	GIMAP6 (ENSG00000133561)	GIMAP4 (ENSG00000133574)	GIMAP7 (ENSG00000179144)	GIMAP8 (ENSG00000171115)	ENSG00000284691	ZNF775 (ENSG00000196456)	REPIN1 (ENSG00000214022)	RARRES2 (ENSG00000106538)	LRRC61 (ENSG00000127399)	ACTR3C (ENSG00000106526) #22	ATP6V0E2 (ENSG00000171130)	ZNF862 (ENSG00000106479)	ZNF467 (ENSG00000181444)	KRBA1 (ENSG00000133619)	ZNF746 (ENSG00000181220)	ZNF777 (ENSG00000196453)	ZNF783 (ENSG00000204946)	ZNF212 (ENSG00000170260)	ZNF282 (ENSG00000170265)	ZNF398 (ENSG00000197024)	ZNF425 (ENSG00000204947)	ZNF786 (ENSG00000197362)	PDIA4 (ENSG00000155660)	EZH2 (ENSG00000106462)	CUL1 (ENSG00000055130)
Catarrhini	ANCESTRAL SPECIES	6	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000166009.a	ENSGT00940000158304.n #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759	ENSGT00390000007809.b
Hominoidea	ANCESTRAL SPECIES	6	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000166009.a	ENSGT00940000158304.n #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A
Hominidae	ANCESTRAL SPECIES	11	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000166009.a	ENSGT00940000158304.n #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	15	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000166009.a	ENSGT00940000158304.n #22	ENSGT00940000156280.f #23	ENSGT00910000147683	ENSGT00940000156280.e #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759	ENSGT00390000007809.b
Homo/Pan group	ANCESTRAL SPECIES	15	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000166009.a	ENSGT00940000158304.n #22	ENSGT00940000156280.f #23	ENSGT00910000147683	ENSGT00940000156280.e #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759	ENSGT00390000007809.b
Human	MODERN SPECIES	19	IQCA1L (ENSG00000278685) #8	H2BK1 (ENSG00000285480)	ABCF2-H2BK1 (ENSG00000285292)	ABCF2 (ENSG00000033050) ##9	CHPF2 (ENSG00000033100) #10	SMARCD3 (ENSG00000082014) #11	NUB1 (ENSG00000013374) #12	WDR86 (ENSG00000187260) #14	CRYGN (ENSG00000127377) #15	RHEB (ENSG00000106615) #16	PRKAG2 (ENSG00000106617) #17	GALNTL5 (ENSG00000106648) #18	GALNT11 (ENSG00000178234) #19	KMT2C (ENSG00000055609) #20	XRCC2 (ENSG00000196584) #21	ACTR3B (ENSG00000133627) #22	DPP6 (ENSG00000130226) #23	PAXIP1 (ENSG00000157212)	HTR5A (ENSG00000157219)	INSIG1 (ENSG00000186480)	EN2 (ENSG00000164778)	CNPY1 (ENSG00000146910)	ENSG00000283128	RBM33 (ENSG00000184863)	SHH (ENSG00000164690)	RNF32 (ENSG00000105982)	LMBR1 (ENSG00000105983)	NOM1 (ENSG00000146909)	MNX1 (ENSG00000130675)	UBE3C (ENSG00000009335)	DNAJB6 (ENSG00000105993)
Pan	ANCESTRAL SPECIES	13	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163244.d.b.b.b	ENSGT00940000163221.b	ENSGT00390000020445 #21	ENSGT00940000166009.a	ENSGT00940000158304.n #22	ENSGT00940000156280.f #23	ENSGT00910000147683	ENSGT00940000156280.e #23	ENSGT00940000155757.u	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759	ENSGT00390000007809.b
Chimpanzee	MODERN SPECIES	20	ABCF2 (ENSPTRG00000019880) ##9	ENSPTRG00000019881 #10	SMARCD3 (ENSPTRG00000019882) #11	NUB1 (ENSPTRG00000019883) #12	ENSPTRG00000019886 #14	CRYGN (ENSPTRG00000019887) #15	RHEB (ENSPTRG00000046866) #16	ENSPTRG00000049560	ENSPTRG00000051211 ##17	GALNTL5 (ENSPTRG00000019890) #18	GALNT11 (ENSPTRG00000019891) #19	KMT2C (ENSPTRG00000019892) #20	ENSPTRG00000045711	XRCC2 (ENSPTRG00000024178) #21	ENSPTRG00000046331	ACTR3B (ENSPTRG00000019897) #22	DPP6 (ENSPTRG00000019901) #23	ENSPTRG00000045579	PAXIP1 (ENSPTRG00000019903)	HTR5A (ENSPTRG00000019904)	INSIG1 (ENSPTRG00000019905)	ENSPTRG00000034315	EN2 (ENSPTRG00000028339)	CNPY1 (ENSPTRG00000049992)	RBM33 (ENSPTRG00000019911)	ENSPTRG00000046066	SHH (ENSPTRG00000019912)	ENSPTRG00000049188	RNF32 (ENSPTRG00000019914)	LMBR1 (ENSPTRG00000019915)	NOM1 (ENSPTRG00000019917)
Orangutan	MODERN SPECIES	20	ABCF2 (ENSPPYG00000029382) ##9	CHPF2 (ENSPPYG00000018190) #10	SMARCD3 (ENSPPYG00000018191) #11	NUB1 (ENSPPYG00000018192) #12	ENSPPYG00000037386 #14	CRYGN (ENSPPYG00000018195) #15	RHEB (ENSPPYG00000039172) #16	PRKAG2 (ENSPPYG00000018197) #17	GALNTL5 (ENSPPYG00000018198) #18	GALNT11 (ENSPPYG00000018199) #19	ENSPPYG00000032475 #20	ENSPPYG00000018200	ENSPPYG00000018202	ENSPPYG00000031368	XRCC2 (ENSPPYG00000018205) #21	ACTR3B (ENSPPYG00000018206) #22	DPP6 (ENSPPYG00000018209) #23	PAXIP1 (ENSPPYG00000018210)	HTR5A (ENSPPYG00000018211)	INSIG1 (ENSPPYG00000018212)	ENSPPYG00000040637	EN2 (ENSPPYG00000018213)	ENSPPYG00000038190	RBM33 (ENSPPYG00000018216)	SHH (ENSPPYG00000018217)	ENSPPYG00000034826	RNF32 (ENSPPYG00000018220)	LMBR1 (ENSPPYG00000018221)	NOM1 (ENSPPYG00000018222)	MNX1 (ENSPPYG00000018223)	UBE3C (ENSPPYG00000018227)
Gibbon	MODERN SPECIES	173																ENSNLEG00000015688 #22	ENSNLEG00000034124
Cercopithecidae	ANCESTRAL SPECIES	31	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00910000147153	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000158304.n #22	ENSGT00910000147683	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00940000154437.mc.a.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00910000147542	ENSGT00940000159119.b	ENSGT00860000136072
Cercopithecinae	ANCESTRAL SPECIES	8	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00910000147153	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000158304.n #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00940000154437.mc.a.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00910000147542	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759
Cercopithecinae_a	ANCESTRAL SPECIES	8	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00910000147153	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000158304.n #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00940000154437.mc.a.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00910000147542	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759
Macaca	ANCESTRAL SPECIES	3	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00910000147153	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000158304.n #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00940000154437.mc.a.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00910000147542	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759
Pig-tailed macaque	MODERN SPECIES	531	IQCA1L (ENSMNEG00000029575) #8	ABCF2 (ENSMNEG00000041240) ##9	CHPF2 (ENSMNEG00000044778) #10	SMARCD3 (ENSMNEG00000033122) #11	NUB1 (ENSMNEG00000045058) #12	WDR86 (ENSMNEG00000036537) #14	CRYGN (ENSMNEG00000041621) #15	RHEB (ENSMNEG00000042255) #16	PRKAG2 (ENSMNEG00000038371) #17	ENSMNEG00000001327	GALNTL5 (ENSMNEG00000039928) #18	GALNT11 (ENSMNEG00000006276) #19	KMT2C (ENSMNEG00000043914) #20	XRCC2 (ENSMNEG00000043329) #21	ENSMNEG00000022342	ACTR3B (ENSMNEG00000033219) #22	DPP6 (ENSMNEG00000034350) #23	PAXIP1 (ENSMNEG00000029988)	ENSMNEG00000019461	HTR5A (ENSMNEG00000037299)	ENSMNEG00000032622	INSIG1 (ENSMNEG00000031299)	ENSMNEG00000032140	EN2 (ENSMNEG00000032127)	ENSMNEG00000019992	RBM33 (ENSMNEG00000034730)	ENSMNEG00000005072	ENSMNEG00000015146	SHH (ENSMNEG00000042217)	ENSMNEG00000030713	RNF32 (ENSMNEG00000045411)
Macaca_a	ANCESTRAL SPECIES	7	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000158304.n #22	ENSGT00940000161627.a.a.a.b.b.b.b.a.a.a.a.a.a.b.a.a.b.a.d.b	ENSGT00940000164709.a.b.b.a.b.b.a.a.b.a.a.a.b.b.b.b	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00910000147542	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657
Rhesus	MODERN SPECIES	13	CHPF2 (ENSMMUG00000006682) #10	SMARCD3 (ENSMMUG00000006687) #11	NUB1 (ENSMMUG00000006244) #12	WDR86 (ENSMMUG00000006248) #14	CRYGN (ENSMMUG00000006249) #15	RHEB (ENSMMUG00000051076) #16	PRKAG2 (ENSMMUG00000010943) #17	GALNTL5 (ENSMMUG00000017721) #18	GALNT11 (ENSMMUG00000012238) #19	KMT2C (ENSMMUG00000007212) #20	CCT8L2 (ENSMMUG00000062061)	ENSMMUG00000058509	ENSMMUG00000019832	XRCC2 (ENSMMUG00000002878) #21	ENSMMUG00000049416	ACTR3B (ENSMMUG00000018920) #22	ENSMMUG00000061812	ENSMMUG00000065266	ENSMMUG00000065142	DPP6 (ENSMMUG00000006328) #23	ENSMMUG00000052833	ENSMMUG00000052584	PAXIP1 (ENSMMUG00000006331)	ENSMMUG00000062987	HTR5A (ENSMMUG00000013084)	INSIG1 (ENSMMUG00000062591)	EN2 (ENSMMUG00000061717)	CNPY1 (ENSMMUG00000007770)	RBM33 (ENSMMUG00000007351)	SHH (ENSMMUG00000062128)	RNF32 (ENSMMUG00000011748)
Crab-eating macaque	MODERN SPECIES	13	SMARCD3 (ENSMFAG00000032295) #11	NUB1 (ENSMFAG00000033644) #12	WDR86 (ENSMFAG00000000892) #14	ENSMFAG00000049054 #15	PRKAG2 (ENSMFAG00000000670) #17	ENSMFAG00000065450	ENSMFAG00000058650	GALNTL5 (ENSMFAG00000044831) #18	GALNT11 (ENSMFAG00000044998) #19	KMT2C (ENSMFAG00000046075) #20	ENSMFAG00000065830	CCT8L2 (ENSMFAG00000048391)	ENSMFAG00000047095	XRCC2 (ENSMFAG00000045621) #21	ENSMFAG00000062598	ACTR3B (ENSMFAG00000034566) #22	ENSMFAG00000059246	ENSMFAG00000054747	ENSMFAG00000049687	DPP6 (ENSMFAG00000000652) #23	ENSMFAG00000047760	PAXIP1 (ENSMFAG00000035337)	ENSMFAG00000048313	ENSMFAG00000060743	ENSMFAG00000063419	HTR5A (ENSMFAG00000046388)	ENSMFAG00000055379	INSIG1 (ENSMFAG00000038429)	EN2 (ENSMFAG00000049184)	ENSMFAG00000040636	ENSMFAG00000060135
Cercopithecinae_b	ANCESTRAL SPECIES	38	ENSGT01100000263569.a.a	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00910000147153	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304.n #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00910000147741	ENSGT01010000222287.B.a.b.a	ENSGT00940000154437.mc.a.a.b.a	ENSGT00580000081600.c.a	ENSGT00500000045650	ENSGT00940000159935	ENSGT00940000161119	ENSGT00910000148142	ENSGT00530000063891	ENSGT00910000147542	ENSGT00940000159119.b	ENSGT00860000136072	ENSGT00390000003759
Cercopithecinae_d	ANCESTRAL SPECIES	25	ENSGT00940000154067.d #8	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00910000147153	ENSGT00940000162156 #18	ENSGT00390000000153.l.b.c.b.a.d	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304.n #22
Sooty mangabey	MODERN SPECIES	636	IQCA1L (ENSCATG00000035118) #8	ENSCATG00000034578 ##9	CHPF2 (ENSCATG00000037379) #10	SMARCD3 (ENSCATG00000031276) #11	NUB1 (ENSCATG00000039631) #12	WDR86 (ENSCATG00000030296) #14	CRYGN (ENSCATG00000016594) #15	RHEB (ENSCATG00000036856) #16	PRKAG2 (ENSCATG00000042399) #17	ENSCATG00000006509	GALNTL5 (ENSCATG00000040265) #18	ENSCATG00000021751	GALNT11 (ENSCATG00000038548) #19	KMT2C (ENSCATG00000031909) #20	XRCC2 (ENSCATG00000044194) #21	ACTR3B (ENSCATG00000043872) #22
Drill	MODERN SPECIES	894	ABCF2 (ENSMLEG00000035392) ##9	CHPF2 (ENSMLEG00000041443) #10	SMARCD3 (ENSMLEG00000039656) #11	NUB1 (ENSMLEG00000000114) #12	WDR86 (ENSMLEG00000032445) #14	CRYGN (ENSMLEG00000036358) #15	RHEB (ENSMLEG00000029027) #16	PRKAG2 (ENSMLEG00000037725) #17	ENSMLEG00000018152	GALNTL5 (ENSMLEG00000042279) #18	ENSMLEG00000039937	GALNT11 (ENSMLEG00000028539) #19	KMT2C (ENSMLEG00000023780) #20	ENSMLEG00000043093	XRCC2 (ENSMLEG00000030192) #21	ACTR3B (ENSMLEG00000033289) #22
Olive baboon	MODERN SPECIES	14	SMARCD3 (ENSPANG00000026411) #11	NUB1 (ENSPANG00000015941) #12	WDR86 (ENSPANG00000009901) #14	CRYGN (ENSPANG00000000818) #15	RHEB (ENSPANG00000000819) #16	PRKAG2 (ENSPANG00000010205) #17	GALNTL5 (ENSPANG00000008930) #18	GALNT11 (ENSPANG00000008529) #19	KMT2C (ENSPANG00000000719) #20	CCT8L2 (ENSPANG00000049571)	XRCC2 (ENSPANG00000015849) #21	ENSPANG00000046669	ENSPANG00000009335	ENSPANG00000044496	ENSPANG00000029546	ACTR3B (ENSPANG00000006816) #22	DPP6 (ENSPANG00000015940) #23	PAXIP1 (ENSPANG00000007658)	ENSPANG00000049230	HTR5A (ENSPANG00000021639)	ENSPANG00000017185	EN2 (ENSPANG00000043821)	ENSPANG00000025756	ENSPANG00000008929	RBM33 (ENSPANG00000024167)	SHH (ENSPANG00000008528)	ENSPANG00000048422	RNF32 (ENSPANG00000021592)	LMBR1 (ENSPANG00000018924)	ENSPANG00000049523	NOM1 (ENSPANG00000007605)
Vervet Monkey	MODERN SPECIES	13	ENSCSAG00000006683	GBX1 (ENSCSAG00000006679)	ASB10 (ENSCSAG00000006673) #7	ABCF2 (ENSCSAG00000006655) ##9	CHPF2 (ENSCSAG00000006640) #10	SMARCD3 (ENSCSAG00000006634) #11	NUB1 (ENSCSAG00000006623) #12	WDR86 (ENSCSAG00000006612) #14	CRYGN (ENSCSAG00000006604) #15	RHEB (ENSCSAG00000006601) #16	PRKAG2 (ENSCSAG00000006594) #17	GALNT11 (ENSCSAG00000006587) #19	KMT2C (ENSCSAG00000006581) #20	CCT8L2 (ENSCSAG00000019526)	XRCC2 (ENSCSAG00000006557) #21	ACTR3B (ENSCSAG00000006554) #22	DPP6 (ENSCSAG00000006540) #23	PAXIP1 (ENSCSAG00000006529)	ENSCSAG00000006520	HTR5A (ENSCSAG00000006516)	INSIG1 (ENSCSAG00000006509)	EN2 (ENSCSAG00000006501)	ENSCSAG00000006497	ENSCSAG00000006494	RBM33 (ENSCSAG00000006489)	SHH (ENSCSAG00000006480)	RNF32 (ENSCSAG00000006474)	LMBR1 (ENSCSAG00000006466)	ENSCSAG00000006438	MNX1 (ENSCSAG00000006434)	UBE3C (ENSCSAG00000006430)
Rhinopithecus	ANCESTRAL SPECIES	91	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00390000009004.ab.a.e	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00910000147153	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00390000001958.t.b	ENSGT00940000158304.n #22
Black snub-nosed monkey	MODERN SPECIES	2087														XRCC2 (ENSRBIG00000039320) #21	ENSRBIG00000041784	ACTR3B (ENSRBIG00000028473) #22
Golden snub-nosed monkey	MODERN SPECIES	2469					NUB1 (ENSRROG00000036620) #12	WDR86 (ENSRROG00000040841) #14	CRYGN (ENSRROG00000031413) #15	RHEB (ENSRROG00000041811) #16	PRKAG2 (ENSRROG00000029993) #17	ENSRROG00000036146	GALNTL5 (ENSRROG00000043991) #18	GALNT11 (ENSRROG00000040600) #19	KMT2C (ENSRROG00000044638) #20	XRCC2 (ENSRROG00000045418) #21	ENSRROG00000041065	ACTR3B (ENSRROG00000045018) #22
Tarsier	MODERN SPECIES	6258														ENSTSYG00000031026	XRCC2 (ENSTSYG00000004757) #21	ACTR3B (ENSTSYG00000034885) #22
Strepsirrhini	ANCESTRAL SPECIES	9	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Lemuriformes	ANCESTRAL SPECIES	4	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910.jb ##9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Lemuriformes_a	ANCESTRAL SPECIES	182																ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154205.g.a.b
Coquerels sifaka	MODERN SPECIES	746																ENSPCOG00000000246 #22
Greater bamboo lemur	MODERN SPECIES	320																ENSPSMG00000011016 #22	DPP6 (ENSPSMG00000010877) #23	PAXIP1 (ENSPSMG00000010674)	HTR5A (ENSPSMG00000010661)	INSIG1 (ENSPSMG00000010653)
Mouse lemur	MODERN SPECIES	2	IQCA1L (ENSMICG00000004778) #8	ABCF2 (ENSMICG00000004786) ##9	CHPF2 (ENSMICG00000031520) #10	SMARCD3 (ENSMICG00000004795) #11	NUB1 (ENSMICG00000004796) #12	WDR86 (ENSMICG00000035281) #14	CRYGN (ENSMICG00000008093) #15	ENSMICG00000031581	RHEB (ENSMICG00000033790) #16	PRKAG2 (ENSMICG00000008109) #17	GALNTL5 (ENSMICG00000046553) #18	ENSMICG00000001057 #19	KMT2C (ENSMICG00000001060) #20	ENSMICG00000012707	XRCC2 (ENSMICG00000032376) #21	ENSMICG00000031851 #22	ENSMICG00000026837	DPP6 (ENSMICG00000017845) #23	PAXIP1 (ENSMICG00000014321)	ENSMICG00000030603	INSIG1 (ENSMICG00000031879)	EN2 (ENSMICG00000036243)	ENSMICG00000028627	RBM33 (ENSMICG00000037987)	SHH (ENSMICG00000027721)	RNF32 (ENSMICG00000015458)	ENSMICG00000044577	LMBR1 (ENSMICG00000015471)	NOM1 (ENSMICG00000017531)	MNX1 (ENSMICG00000028566)	UBE3C (ENSMICG00000013340)
Bushbaby	MODERN SPECIES	168	IQCA1L (ENSOGAG00000017215) #8	ENSOGAG00000017216 #9	CHPF2 (ENSOGAG00000016836) #10	SMARCD3 (ENSOGAG00000028429) #11	NUB1 (ENSOGAG00000008637) #12	WDR86 (ENSOGAG00000030798) #14	CRYGN (ENSOGAG00000030127) #15	RHEB (ENSOGAG00000008642) #16	PRKAG2 (ENSOGAG00000008645) #17	GALNTL5 (ENSOGAG00000007538) #18	GALNT11 (ENSOGAG00000006571) #19	ENSOGAG00000034047 #20	ENSOGAG00000006574 #20	CCT8L2 (ENSOGAG00000028124)	XRCC2 (ENSOGAG00000025679) #21	ENSOGAG00000003249 #22	DPP6 (ENSOGAG00000008443) #23	PAXIP1 (ENSOGAG00000000702)	HTR5A (ENSOGAG00000034672)	INSIG1 (ENSOGAG00000033732)	EN2 (ENSOGAG00000005579)	ENSOGAG00000005578	ENSOGAG00000029258	ENSOGAG00000024373	RBM33 (ENSOGAG00000032262)	ENSOGAG00000030068	RNF32 (ENSOGAG00000002082)	LMBR1 (ENSOGAG00000002085)	ENSOGAG00000033163	ENSOGAG00000028060	ENSOGAG00000028007
Euarchontoglires_A	ANCESTRAL SPECIES	17	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Tree shrew	MODERN SPECIES	7462																ENSTBEG00000011647 #22
Glires	ANCESTRAL SPECIES	18	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Lagomorpha	ANCESTRAL SPECIES	295												ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757
Rabbit	MODERN SPECIES	4	ABCF2 (ENSOCUG00000000245) #9	CHPF2 (ENSOCUG00000000247) #10	SMARCD3 (ENSOCUG00000000249) #11	NUB1 (ENSOCUG00000004031) #12	WDR86 (ENSOCUG00000004055) #14	CRYGN (ENSOCUG00000013525) #15	RHEB (ENSOCUG00000013173) #16	ENSOCUG00000029750	ENSOCUG00000034117	PRKAG2 (ENSOCUG00000006463) #17	ENSOCUG00000021944	GALNTL5 (ENSOCUG00000011307) #18	GALNT11 (ENSOCUG00000011317) #19	KMT2C (ENSOCUG00000011322) #20	CCT8L2 (ENSOCUG00000000742)	ENSOCUG00000000459 #22	DPP6 (ENSOCUG00000012252) #23	ENSOCUG00000029811	PAXIP1 (ENSOCUG00000023370)	ENSOCUG00000036173	ENSOCUG00000017862	ENSOCUG00000025648	ENSOCUG00000036066	ENSOCUG00000023248	SUCO (ENSOCUG00000007590)	ENSOCUG00000038737	C1orf105 (ENSOCUG00000029014)	ENSOCUG00000006005	DNM3 (ENSOCUG00000005995)	ENSOCUG00000036384	METTL13 (ENSOCUG00000008257)
Pika	DUPLICATION
Pika	MODERN SPECIES	8672																ENSOPRG00000014246 #22
Pika	MODERN SPECIES	2004																ENSOPRG00000019164 #22	TMEM140 (ENSOPRG00000002039)	ENSOPRG00000002045	WDR91 (ENSOPRG00000002066)	ENSOPRG00000002094
Rodentia	ANCESTRAL SPECIES	12	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Rodentia_B	ANCESTRAL SPECIES	9	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00960000189764.a
Myomorpha	ANCESTRAL SPECIES	8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00960000189764.a
Muroidea	ANCESTRAL SPECIES	8	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00960000189764.a
Muroidea_A	ANCESTRAL SPECIES	4	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00390000000878
Cricetidae	ANCESTRAL SPECIES	3	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000166831	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00390000000878
Cricetinae	ANCESTRAL SPECIES	8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000166831	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a.i	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00390000000878
Chinese hamster chok1gshd	MODERN SPECIES	212	Iqca1l (ENSCGRG00001021354) #8	Abcf2 (ENSCGRG00001008869) #9	Chpf2 (ENSCGRG00001011550) #10	Smarcd3 (ENSCGRG00001012201) #11	Nub1 (ENSCGRG00001017536) #12	Wdr86 (ENSCGRG00001018301) #14	Crygn (ENSCGRG00001018926) #15	Rheb (ENSCGRG00001021366) #16	Prkag2 (ENSCGRG00001022044) #17	Galntl5 (ENSCGRG00001010298) #18	Galnt11 (ENSCGRG00001013302) #19	E130116L18Rik (ENSCGRG00001017528)	Kmt2c (ENSCGRG00001003349) #20	Cct8l1 (ENSCGRG00001016412)	Xrcc2 (ENSCGRG00001014306) #21	Actr3b (ENSCGRG00001019328) #22	ENSCGRG00001005137	Dpp6 (ENSCGRG00001021197) #23	Paxip1 (ENSCGRG00001019392)	Htr5a (ENSCGRG00001010326)	Insig1 (ENSCGRG00001012058)	En2 (ENSCGRG00001019240)	Cnpy1 (ENSCGRG00001022362)	Rbm33 (ENSCGRG00001021677)	Shh (ENSCGRG00001016950)	Rnf32 (ENSCGRG00001006621)	ENSCGRG00001013740	Lmbr1 (ENSCGRG00001017749)	ENSCGRG00001002440	Nom1 (ENSCGRG00001020293)	Mnx1 (ENSCGRG00001023539)
Golden Hamster	MODERN SPECIES	781												Galnt11 (ENSMAUG00000014251) #19	ENSMAUG00000012286 #20	ENSMAUG00000009446	ENSMAUG00000012568	Actr3b (ENSMAUG00000009519) #22	Dpp6 (ENSMAUG00000007340) #23	Paxip1 (ENSMAUG00000003325)	Htr5a (ENSMAUG00000001772)	Insig1 (ENSMAUG00000000814)	En2 (ENSMAUG00000018311)	ENSMAUG00000000075	Rbm33 (ENSMAUG00000017332)	Shh (ENSMAUG00000016493)	Rnf32 (ENSMAUG00000000042)	Lmbr1 (ENSMAUG00000015566)	ENSMAUG00000014867	Nom1 (ENSMAUG00000017988)	Mnx1 (ENSMAUG00000016323)	Ube3c (ENSMAUG00000014156)
Cricetidae_B	ANCESTRAL SPECIES	10	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000166831	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00960000189764.a
Prairie vole	MODERN SPECIES	101	Iqca1l (ENSMOCG00000015251) #8	Abcf2 (ENSMOCG00000015316) #9	Chpf2 (ENSMOCG00000007789) #10	Smarcd3 (ENSMOCG00000010890) #11	ENSMOCG00000015181	Nub1 (ENSMOCG00000019268) #12	Wdr86 (ENSMOCG00000000597) #14	Crygn (ENSMOCG00000015061) #15	Rheb (ENSMOCG00000022240) #16	Prkag2 (ENSMOCG00000001286) #17	Galntl5 (ENSMOCG00000013714) #18	Galnt11 (ENSMOCG00000005276) #19	ENSMOCG00000001053 #20	ENSMOCG00000020782	ENSMOCG00000016671	Actr3b (ENSMOCG00000004828) #22	Dpp6 (ENSMOCG00000000556) #23	Paxip1 (ENSMOCG00000013649)	Htr5a (ENSMOCG00000019605)	Insig1 (ENSMOCG00000020032)	En2 (ENSMOCG00000015841)	ENSMOCG00000019441	ENSMOCG00000010240	Rbm33 (ENSMOCG00000021895)	Shh (ENSMOCG00000008843)	ENSMOCG00000013020	ENSMOCG00000018001	Rnf32 (ENSMOCG00000014460)	Lmbr1 (ENSMOCG00000008297)	ENSMOCG00000010734	Nom1 (ENSMOCG00000015962)
Northern American deer mouse	MODERN SPECIES	16	Asb10 (ENSPEMG00000008631) #7	Iqca1l (ENSPEMG00000008977) #8	Abcf2 (ENSPEMG00000011302) #9	Chpf2 (ENSPEMG00000023137) #10	Smarcd3 (ENSPEMG00000017902) #11	Nub1 (ENSPEMG00000001953) #12	Wdr86 (ENSPEMG00000010088) #14	Crygn (ENSPEMG00000000688) #15	Rheb (ENSPEMG00000023193) #16	Prkag2 (ENSPEMG00000023670) #17	Galntl5 (ENSPEMG00000013005) #18	Galnt11 (ENSPEMG00000019403) #19	Kmt2c (ENSPEMG00000030774) #20	Cct8l1 (ENSPEMG00000026242)	Xrcc2 (ENSPEMG00000019759) #21	Actr3b (ENSPEMG00000018361) #22	Dpp6 (ENSPEMG00000025609) #23	Paxip1 (ENSPEMG00000024228)	Htr5a (ENSPEMG00000030608)	Insig1 (ENSPEMG00000022295)	En2 (ENSPEMG00000027515)	ENSPEMG00000016430	Rbm33 (ENSPEMG00000017918)	Shh (ENSPEMG00000027532)	ENSPEMG00000028888	Rnf32 (ENSPEMG00000023063)	Lmbr1 (ENSPEMG00000000837)	Nom1 (ENSPEMG00000024180)	Mnx1 (ENSPEMG00000013095)	Ube3c (ENSPEMG00000022332)	ENSPEMG00000021036
Murinae	ANCESTRAL SPECIES	31	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00390000000878
Mus	ANCESTRAL SPECIES	24	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00800000125329	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00860000136054	ENSGT00940000154205.h
Mus_A	ANCESTRAL SPECIES	6	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00800000125329	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00860000136054	ENSGT00940000154205.h
Mus_B	ANCESTRAL SPECIES	4	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00800000125329	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00860000136054	ENSGT00940000154205.h
Mouse	MODERN SPECIES	14	Iqca1l (ENSMUSG00000038199) #8	Abcf2 (ENSMUSG00000028953) #9	Chpf2 (ENSMUSG00000038181) #10	Smarcd3 (ENSMUSG00000028949) #11	Nub1 (ENSMUSG00000028954) #12	Wdr86 (ENSMUSG00000055235) #14	Crygn (ENSMUSG00000038135) #15	Rheb (ENSMUSG00000028945) #16	Prkag2 (ENSMUSG00000028944) #17	Galntl5 (ENSMUSG00000028938) #18	Galnt11 (ENSMUSG00000038072) #19	E130116L18Rik (ENSMUSG00000054116)	Kmt2c (ENSMUSG00000038056) #20	Cct8l1 (ENSMUSG00000038044)	Xrcc2 (ENSMUSG00000028933) #21	Actr3b (ENSMUSG00000056367) #22	Gm21663 (ENSMUSG00000104824)	Gm21671 (ENSMUSG00000095550)	Gm21680 (ENSMUSG00000106627)	Gm21698 (ENSMUSG00000096045)	Gm1979 (ENSMUSG00000091049)	Gm5862 (ENSMUSG00000067700)	Speer4a (ENSMUSG00000073119)	Gm7347 (ENSMUSG00000073117)	Gm10471 (ENSMUSG00000073116)	5031410I06Rik (ENSMUSG00000051940)	Gm10220 (ENSMUSG00000067698)	Gm7361 (ENSMUSG00000059645)	Dpp6 (ENSMUSG00000061576) #23	Speer4b (ENSMUSG00000048703)	Paxip1 (ENSMUSG00000002221)
Mus_C	ANCESTRAL SPECIES	4	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00800000125329	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00860000136054	ENSGT00940000154205.h
spretus	MODERN SPECIES	14	Iqca1l (MGP_SPRETEiJ_G0028013) #8	Abcf2 (MGP_SPRETEiJ_G0028014) #9	Chpf2 (MGP_SPRETEiJ_G0028015) #10	Smarcd3 (MGP_SPRETEiJ_G0028016) #11	Nub1 (MGP_SPRETEiJ_G0028017) #12	Wdr86 (MGP_SPRETEiJ_G0028018) #14	Crygn (MGP_SPRETEiJ_G0028019) #15	Rheb (MGP_SPRETEiJ_G0028020) #16	Prkag2 (MGP_SPRETEiJ_G0028021) #17	Galntl5 (MGP_SPRETEiJ_G0028022) #18	Galnt11 (MGP_SPRETEiJ_G0028023) #19	E130116L18Rik (MGP_SPRETEiJ_G0028024)	Kmt2c (MGP_SPRETEiJ_G0028025) #20	Cct8l1 (MGP_SPRETEiJ_G0028026)	Xrcc2 (MGP_SPRETEiJ_G0028027) #21	Actr3b (MGP_SPRETEiJ_G0028028) #22	Dpp6 (MGP_SPRETEiJ_G0028029) #23	Paxip1 (MGP_SPRETEiJ_G0028030)	Htr5a (MGP_SPRETEiJ_G0028031)	Insig1 (MGP_SPRETEiJ_G0028032)	En2 (MGP_SPRETEiJ_G0028033)	MGP_SPRETEiJ_G0028034	Rbm33 (MGP_SPRETEiJ_G0028035)	Shh (MGP_SPRETEiJ_G0028036)	MGP_SPRETEiJ_G0028037	Lmbr1 (MGP_SPRETEiJ_G0028038)	MGP_SPRETEiJ_G0028039	Mnx1 (MGP_SPRETEiJ_G0028040)	MGP_SPRETEiJ_G0028041	MGP_SPRETEiJ_G0028042	MGP_SPRETEiJ_G0028043
Steppe mouse	MODERN SPECIES	34	Smarcd3 (ENSMSIG00000016483) #11	Nub1 (ENSMSIG00000016418) #12	ENSMSIG00000016414	ENSMSIG00000016410 #14	Crygn (ENSMSIG00000016389) #15	Rheb (ENSMSIG00000016368) #16	ENSMSIG00000016358	Prkag2 (ENSMSIG00000016296) #17	E130116L18Rik (ENSMSIG00000016270)	Galnt11 (ENSMSIG00000016201) #19	Kmt2c (ENSMSIG00000015422) #20	ENSMSIG00000015400	Cct8l1 (ENSMSIG00000015391)	ENSMSIG00000015382	Xrcc2 (ENSMSIG00000015358) #21	Actr3b (ENSMSIG00000015155) #22
Shrew mouse	MODERN SPECIES	11	Iqca1l (MGP_PahariEiJ_G0021790) #8	Abcf2 (MGP_PahariEiJ_G0021791) #9	Chpf2 (MGP_PahariEiJ_G0021792) #10	Smarcd3 (MGP_PahariEiJ_G0021793) #11	Nub1 (MGP_PahariEiJ_G0021794) #12	Wdr86 (MGP_PahariEiJ_G0021795) #14	Crygn (MGP_PahariEiJ_G0021796) #15	Rheb (MGP_PahariEiJ_G0021797) #16	Prkag2 (MGP_PahariEiJ_G0021798) #17	Galntl5 (MGP_PahariEiJ_G0021799) #18	Galnt11 (MGP_PahariEiJ_G0021800) #19	MGP_PahariEiJ_G0021801	Kmt2c (MGP_PahariEiJ_G0021802) #20	Cct8l1 (MGP_PahariEiJ_G0021803)	MGP_PahariEiJ_G0021804	MGP_PahariEiJ_G0021805 #22	Dpp6 (MGP_PahariEiJ_G0021806) #23	Paxip1 (MGP_PahariEiJ_G0021807)	Htr5a (MGP_PahariEiJ_G0021808)	Insig1 (MGP_PahariEiJ_G0021809)	En2 (MGP_PahariEiJ_G0021810)	MGP_PahariEiJ_G0021811	Rbm33 (MGP_PahariEiJ_G0021812)	Shh (MGP_PahariEiJ_G0021813)	Rnf32 (MGP_PahariEiJ_G0021814)	Lmbr1 (MGP_PahariEiJ_G0021815)	MGP_PahariEiJ_G0021816	Mnx1 (MGP_PahariEiJ_G0021817)	Ube3c (MGP_PahariEiJ_G0021818)	MGP_PahariEiJ_G0021819	MGP_PahariEiJ_G0021820
Rat	MODERN SPECIES	14	Smarcd3 (ENSRNOG00000010077) #11	AC099360.1 (ENSRNOG00000025214)	Nub1 (ENSRNOG00000009282) #12	Wdr86 (ENSRNOG00000025735) #14	Crygn (ENSRNOG00000009226) #15	Rheb (ENSRNOG00000050578) #16	Prkag2 (ENSRNOG00000009085) #17	LOC120102456 (ENSRNOG00000062492)	Galntl5 (ENSRNOG00000040301) #18	Galnt11 (ENSRNOG00000008117) #19	Kmt2c (ENSRNOG00000061080) #20	Cct8l2 (ENSRNOG00000047114)	Rpl10a-ps9 (ENSRNOG00000047067)	AABR07059161.1 (ENSRNOG00000051942)	Xrcc2 (ENSRNOG00000007493) #21	Actr3b (ENSRNOG00000031855) #22	Dpp6 (ENSRNOG00000030547) #23	Paxip1 (ENSRNOG00000007131)	Htr5a (ENSRNOG00000007066)	Insig1 (ENSRNOG00000006859)	En2 (ENSRNOG00000006846)	Cnpy1 (ENSRNOG00000028311)	Rbm33 (ENSRNOG00000006718)	Shh (ENSRNOG00000006120)	Rnf32 (ENSRNOG00000005691)	Lmbr1 (ENSRNOG00000059589)	Nom1 (ENSRNOG00000048969)	Mnx1 (ENSRNOG00000046959)	LOC681193 (ENSRNOG00000042507)	Ube3c (ENSRNOG00000010702)	Dnajb6 (ENSRNOG00000010353)
Upper Galilee mountains blind mole rat	MODERN SPECIES	1374	Iqca1l (ENSNGAG00000014895) #8	Abcf2 (ENSNGAG00000023843) #9	Chpf2 (ENSNGAG00000018522) #10	Smarcd3 (ENSNGAG00000020148) #11	Nub1 (ENSNGAG00000021107) #12	Wdr86 (ENSNGAG00000022320) #14	Crygn (ENSNGAG00000024102) #15	Rheb (ENSNGAG00000023353) #16	Prkag2 (ENSNGAG00000021870) #17	Galntl5 (ENSNGAG00000002774) #18	Galnt11 (ENSNGAG00000016540) #19	ENSNGAG00000024244 #20	ENSNGAG00000008770	Cct8l1 (ENSNGAG00000024263)	Xrcc2 (ENSNGAG00000015889) #21	Actr3b (ENSNGAG00000022250) #22	Dpp6 (ENSNGAG00000001967) #23	Paxip1 (ENSNGAG00000022525)	Htr5a (ENSNGAG00000023507)	ENSNGAG00000001402	Insig1 (ENSNGAG00000018486)	En2 (ENSNGAG00000019365)	ENSNGAG00000014003	ENSNGAG00000012731	ENSNGAG00000015914	Shh (ENSNGAG00000024336)	ENSNGAG00000013870	Rnf32 (ENSNGAG00000017198)	Lmbr1 (ENSNGAG00000021357)	Mnx1 (ENSNGAG00000002892)	ENSNGAG00000020250
Lesser Egyptian jerboa	MODERN SPECIES	172	Asb10 (ENSJJAG00000013788) #7	Iqca1l (ENSJJAG00000011826) #8	ENSJJAG00000010250 #9	Chpf2 (ENSJJAG00000009557) #10	Smarcd3 (ENSJJAG00000007835) #11	Nub1 (ENSJJAG00000022628) #12	Wdr86 (ENSJJAG00000022192) #14	Crygn (ENSJJAG00000010524) #15	ENSJJAG00000007504 #16	Prkag2 (ENSJJAG00000009778) #17	ENSJJAG00000006959 ##17	Galntl5 (ENSJJAG00000004070) #18	Galnt11 (ENSJJAG00000024147) #19	ENSJJAG00000019327 #20	ENSJJAG00000019172	Actr3b (ENSJJAG00000018668) #22	Dpp6 (ENSJJAG00000013246) #23	Paxip1 (ENSJJAG00000023948)	Htr5a (ENSJJAG00000019192)	Insig1 (ENSJJAG00000018289)	En2 (ENSJJAG00000016874)	ENSJJAG00000016791	ENSJJAG00000015641	ENSJJAG00000015197	ENSJJAG00000020415	Shh (ENSJJAG00000019136)	Rnf32 (ENSJJAG00000017940)	Lmbr1 (ENSJJAG00000012968)	ENSJJAG00000011947	Nom1 (ENSJJAG00000011716)	Mnx1 (ENSJJAG00000009088)
Kangaroo rat	MODERN SPECIES	420	Asb10 (ENSDORG00000003974) #7	Iqca1l (ENSDORG00000002574) #8	Abcf2 (ENSDORG00000012672) #9	Chpf2 (ENSDORG00000012673) #10	Smarcd3 (ENSDORG00000012674) #11	Nub1 (ENSDORG00000012490) #12	Wdr86 (ENSDORG00000012494) #14	Crygn (ENSDORG00000028405) #15	Rheb (ENSDORG00000010304) #16	ENSDORG00000008404 #17	ENSDORG00000026219 ##17	Galntl5 (ENSDORG00000003460) #18	Galnt11 (ENSDORG00000002329) #19	ENSDORG00000026332 #20	ENSDORG00000030238	Actr3b (ENSDORG00000001848) #22	Dpp6 (ENSDORG00000012792) #23	Paxip1 (ENSDORG00000006482)	Htr5a (ENSDORG00000014112)	Insig1 (ENSDORG00000026050)	En2 (ENSDORG00000028135)	ENSDORG00000026869	ENSDORG00000028249	ENSDORG00000027267	Rnf32 (ENSDORG00000002319)	Lmbr1 (ENSDORG00000012962)	Nom1 (ENSDORG00000015682)	Ube3c (ENSDORG00000015913)
Rodentia_A	ANCESTRAL SPECIES	12	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Sciuridae	ANCESTRAL SPECIES	7	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227.e #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00960000189764.a
Marmotini	ANCESTRAL SPECIES	32	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227.e #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Alpin marmot	MODERN SPECIES	35	IQCA1L (ENSMMMG00000005830) #8	H2BK1 (ENSMMMG00000005826)	ABCF2 (ENSMMMG00000005590) #9	CHPF2 (ENSMMMG00000005585) #10	SMARCD3 (ENSMMMG00000005566) #11	NUB1 (ENSMMMG00000005485) #12	WDR86 (ENSMMMG00000005473) #14	CRYGN (ENSMMMG00000005436) #15	RHEB (ENSMMMG00000005420) #16	PRKAG2 (ENSMMMG00000005353) #17	GALNTL5 (ENSMMMG00000005286) #18	GALNT11 (ENSMMMG00000005267) #19	KMT2C (ENSMMMG00000004874) #20	CCT8L2 (ENSMMMG00000004866)	XRCC2 (ENSMMMG00000004843) #21	ENSMMMG00000004817 #22	DPP6 (ENSMMMG00000004485) #23
Marmotini_b	ANCESTRAL SPECIES	45	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227.e #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b
Squirrel	MODERN SPECIES	127	ASB10 (ENSSTOG00000020651) #7	IQCA1L (ENSSTOG00000009621) #8	ABCF2 (ENSSTOG00000009626) #9	CHPF2 (ENSSTOG00000009651) #10	SMARCD3 (ENSSTOG00000009660) #11	NUB1 (ENSSTOG00000008307) #12	WDR86 (ENSSTOG00000028782) #14	CRYGN (ENSSTOG00000004537) #15	RHEB (ENSSTOG00000004544) #16	PRKAG2 (ENSSTOG00000021632) #17	GALNTL5 (ENSSTOG00000012361) #18	GALNT11 (ENSSTOG00000005132) #19	KMT2C (ENSSTOG00000013723) #20	CCT8L2 (ENSSTOG00000025875)	XRCC2 (ENSSTOG00000002470) #21	ENSSTOG00000000969 #22	DPP6 (ENSSTOG00000003823) #23	PAXIP1 (ENSSTOG00000021376)	HTR5A (ENSSTOG00000014566)	INSIG1 (ENSSTOG00000024857)	EN2 (ENSSTOG00000025941)	ENSSTOG00000033276	RBM33 (ENSSTOG00000023973)	SHH (ENSSTOG00000021031)
Eurasian red squirrel	MODERN SPECIES	17	IQCA1L (ENSSVLG00005007273) #8	H2BK1 (ENSSVLG00005007235)	ENSSVLG00005007181 #9	CHPF2 (ENSSVLG00005007152) #10	SMARCD3 (ENSSVLG00005007107) #11	NUB1 (ENSSVLG00005007078) #12	WDR86 (ENSSVLG00005007063) #14	CRYGN (ENSSVLG00005007028) #15	RHEB (ENSSVLG00005006988) #16	PRKAG2 (ENSSVLG00005006761) #17	GALNTL5 (ENSSVLG00005006658) #18	ENSSVLG00005006622 #19	KMT2C (ENSSVLG00005006324) #20	CCT8L2 (ENSSVLG00005006281)	XRCC2 (ENSSVLG00005006214) #21	ENSSVLG00005006154 #22	DPP6 (ENSSVLG00005005798) #23	PAXIP1 (ENSSVLG00005005680)	HTR5A (ENSSVLG00005005652)	INSIG1 (ENSSVLG00005005612)	EN2 (ENSSVLG00005005587)	ENSSVLG00005005541	ENSSVLG00005005471	ENSSVLG00005005430	SHH (ENSSVLG00005005393)	ENSSVLG00005005359	RNF32 (ENSSVLG00005005337)	LMBR1 (ENSSVLG00005005244)	NOM1 (ENSSVLG00005005155)	MNX1 (ENSSVLG00005005127)	UBE3C (ENSSVLG00005005098)
Hystricomorpha	ANCESTRAL SPECIES	35	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Hystricomorpha_a	ANCESTRAL SPECIES	40	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Hystricomorpha_b	ANCESTRAL SPECIES	40	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h.jc.a	ENSGT00940000154095.b.a
Degu	MODERN SPECIES	68	CHPF2 (ENSODEG00000013871) #10	SMARCD3 (ENSODEG00000009877) #11	GBX1 (ENSODEG00000010838)	ENSODEG00000019677	NUB1 (ENSODEG00000013029) #12	WDR86 (ENSODEG00000011320) #14	CRYGN (ENSODEG00000010431) #15	RHEB (ENSODEG00000009963) #16	ENSODEG00000010576 #17	ENSODEG00000010230 ##17	GALNTL5 (ENSODEG00000010884) #18	GALNT11 (ENSODEG00000010700) #19	ENSODEG00000010160 #20	ENSODEG00000010322	ENSODEG00000009802	ENSODEG00000009981 #22	DPP6 (ENSODEG00000011104) #23	PAXIP1 (ENSODEG00000011288)	HTR5A (ENSODEG00000014269)	INSIG1 (ENSODEG00000010315)	EN2 (ENSODEG00000010942)	ENSODEG00000010168	ENSODEG00000010830	ENSODEG00000009918	SHH (ENSODEG00000010106)	ENSODEG00000019851	RNF32 (ENSODEG00000010017)	ENSODEG00000010749	ENSODEG00000019843	NOM1 (ENSODEG00000009399)	MNX1 (ENSODEG00000010950)
Long-tailed chinchilla	MODERN SPECIES	198	ASB10 (ENSCLAG00000009063) #7	IQCA1L (ENSCLAG00000009596) #8	ABCF2 (ENSCLAG00000001001) #9	CHPF2 (ENSCLAG00000001087) #10	SMARCD3 (ENSCLAG00000001124) #11	NUB1 (ENSCLAG00000001153) #12	WDR86 (ENSCLAG00000001192) #14	CRYGN (ENSCLAG00000001204) #15	RHEB (ENSCLAG00000001338) #16	PRKAG2 (ENSCLAG00000001384) #17	GALNTL5 (ENSCLAG00000001429) #18	GALNT11 (ENSCLAG00000001492) #19	KMT2C (ENSCLAG00000001864) #20	CCT8L2 (ENSCLAG00000002244)	XRCC2 (ENSCLAG00000002275) #21	ENSCLAG00000002298 #22	DPP6 (ENSCLAG00000002591) #23	ENSCLAG00000002985	PAXIP1 (ENSCLAG00000000995)	HTR5A (ENSCLAG00000001100)	INSIG1 (ENSCLAG00000001112)	ENSCLAG00000001118	ENSCLAG00000001129	RBM33 (ENSCLAG00000001190)	ENSCLAG00000001349	RNF32 (ENSCLAG00000001359)	ENSCLAG00000001407
Guinea pig	MODERN SPECIES	32	IQCA1L (ENSCPOG00000006528) #8	ABCF2 (ENSCPOG00000008379) #9	CHPF2 (ENSCPOG00000033035) #10	SMARCD3 (ENSCPOG00000020971) #11	NUB1 (ENSCPOG00000012070) #12	WDR86 (ENSCPOG00000026626) #14	Crygn (ENSCPOG00000005218) #15	RHEB (ENSCPOG00000031743) #16	PRKAG2 (ENSCPOG00000015691) #17	ENSCPOG00000022472	GALNTL5 (ENSCPOG00000005168) #18	GALNT11 (ENSCPOG00000005174) #19	KMT2C (ENSCPOG00000001857) #20	CCT8L2 (ENSCPOG00000020546)	XRCC2 (ENSCPOG00000012263) #21	ENSCPOG00000003695 #22	DPP6 (ENSCPOG00000003511) #23	PAXIP1 (ENSCPOG00000001303)	HTR5A (ENSCPOG00000007970)	INSIG1 (ENSCPOG00000014739)	EN2 (ENSCPOG00000024572)	ENSCPOG00000009846	RBM33 (ENSCPOG00000011852)	SHH (ENSCPOG00000023638)	RNF32 (ENSCPOG00000012026)	LMBR1 (ENSCPOG00000003305)	NOM1 (ENSCPOG00000025538)	ENSCPOG00000022207	UBE3C (ENSCPOG00000013408)	DNAJB6 (ENSCPOG00000031435)	ENSCPOG00000022941
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	14	GBX1 (ENSHGLG00000042035)	ASB10 (ENSHGLG00000005594) #7	ABCF2 (ENSHGLG00000005286) #9	ENSHGLG00000038267 #10	ENSHGLG00000041150	SMARCD3 (ENSHGLG00000003237) #11	ENSHGLG00000034995 #12	RHEB (ENSHGLG00000042643) #16	ENSHGLG00000038611 ##17	GALNTL5 (ENSHGLG00000003942) #18	GALNT11 (ENSHGLG00000010004) #19	ENSHGLG00000018334 #20	ENSHGLG00000036262	ENSHGLG00000044948	XRCC2 (ENSHGLG00000035399) #21	ENSHGLG00000003449 #22	ENSHGLG00000018716	ENSHGLG00000042205 #23	ENSHGLG00000019103	DYNC2I1 (ENSHGLG00000006228)	ESYT2 (ENSHGLG00000004302)	NCAPG2 (ENSHGLG00000005951)	ENSHGLG00000036053	ENSHGLG00000050437	ENSHGLG00000050124	DNAJB6 (ENSHGLG00000018860)	UBE3C (ENSHGLG00000008254)	MNX1 (ENSHGLG00000006212)	NOM1 (ENSHGLG00000007392)	LMBR1 (ENSHGLG00000010444)	RNF32 (ENSHGLG00000037782)
Naked mole-rat female	MODERN SPECIES	8	ENSHGLG00000032385	KRT5 (ENSHGLG00000000726)	KRT71 (ENSHGLG00000000999)	KRT74 (ENSHGLG00000001080)	KRT72 (ENSHGLG00000001158)	KRT73 (ENSHGLG00000001292)	KRT1 (ENSHGLG00000001162)	ENSHGLG00000034753	KRT76 (ENSHGLG00000001572)	KRT4 (ENSHGLG00000001911)	KRT79 (ENSHGLG00000000843)	KRT78 (ENSHGLG00000000919)	Krt8 (ENSHGLG00000001413)	ENSHGLG00000037005	ENSHGLG00000001537	ENSHGLG00000019972 #22	ENSHGLG00000002516	ENSHGLG00000045323	ENSHGLG00000002678	SPRYD3 (ENSHGLG00000003437)	IGFBP6 (ENSHGLG00000003596)	SOAT2 (ENSHGLG00000001722)	CSAD (ENSHGLG00000003514)	ZNF740 (ENSHGLG00000042228)	ITGB7 (ENSHGLG00000005533)	ENSHGLG00000019365	ENSHGLG00000019577	ENSHGLG00000007558	ENSHGLG00000002363	ENSHGLG00000032190	ENSHGLG00000049773
Laurasiatheria	ANCESTRAL SPECIES	21	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351
Laurasiatheria_a	ANCESTRAL SPECIES	14	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A
Laurasiatheria_b	ANCESTRAL SPECIES	14	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a
Carnivora	ANCESTRAL SPECIES	15	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a
Caniformia	ANCESTRAL SPECIES	11	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Caniformia_b	ANCESTRAL SPECIES	9	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000165471
Ursidae	ANCESTRAL SPECIES	44	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000165471
Ursus	ANCESTRAL SPECIES	116	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000165471	ENSGT00960000188704
Polar bear	MODERN SPECIES	151	IQCA1L (ENSUMAG00000016259) #8	H2BK1 (ENSUMAG00000016256)	ABCF2 (ENSUMAG00000016249) #9	CHPF2 (ENSUMAG00000016237) #10	SMARCD3 (ENSUMAG00000016198) #11	NUB1 (ENSUMAG00000016184) #12	ENSUMAG00000016172 #14	ENSUMAG00000016148 #15	PRKAG2 (ENSUMAG00000016133) #17	ENSUMAG00000016126 #17	GALNTL5 (ENSUMAG00000016112) #18	GALNT11 (ENSUMAG00000016107) #19	ENSUMAG00000016055 #20	ENSUMAG00000016033	XRCC2 (ENSUMAG00000016029) #21	ENSUMAG00000016012 #22	ENSUMAG00000015998	DPP6 (ENSUMAG00000014830) #23	PAXIP1 (ENSUMAG00000014568)	HTR5A (ENSUMAG00000014544)	INSIG1 (ENSUMAG00000014523)	ENSUMAG00000014512	ENSUMAG00000014506	RBM33 (ENSUMAG00000014407)	ENSUMAG00000014393	RNF32 (ENSUMAG00000014380)	LMBR1 (ENSUMAG00000014327)	NOM1 (ENSUMAG00000014275)	UBE3C (ENSUMAG00000013926)	DNAJB6 (ENSUMAG00000013855)	ENSUMAG00000013837
American black bear	MODERN SPECIES	589														CCT8L2 (ENSUAMG00000026949)	XRCC2 (ENSUAMG00000026950) #21	ENSUAMG00000026956 #22
Giant Panda	MODERN SPECIES		CHPF2 (ENSAMEG00000013565) #10	SMARCD3 (ENSAMEG00000013533) #11	NUB1 (ENSAMEG00000013484) #12	WDR86 (ENSAMEG00000025798) #14	CRYGN (ENSAMEG00000027525) #15	RHEB (ENSAMEG00000013453) #16	PRKAG2 (ENSAMEG00000013406) #17	ENSAMEG00000026043	ENSAMEG00000031502	ENSAMEG00000013395	GALNTL5 (ENSAMEG00000013380) #18	GALNT11 (ENSAMEG00000013367) #19	KMT2C (ENSAMEG00000013308) #20	ENSAMEG00000019534	XRCC2 (ENSAMEG00000013304) #21	ENSAMEG00000013262 #22	DPP6 (ENSAMEG00000001268) #23	PAXIP1 (ENSAMEG00000001238)	HTR5A (ENSAMEG00000024151)	INSIG1 (ENSAMEG00000001234)	ENSAMEG00000029275	ENSAMEG00000031289	RBM33 (ENSAMEG00000001198)	SHH (ENSAMEG00000028933)	RNF32 (ENSAMEG00000028945)	LMBR1 (ENSAMEG00000001431)	NOM1 (ENSAMEG00000001412)	MNX1 (ENSAMEG00000026181)	UBE3C (ENSAMEG00000001353)	DNAJB6 (ENSAMEG00000001332)	ENSAMEG00000029513
Mustelinae	ANCESTRAL SPECIES	79	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000165471
Ferret	MODERN SPECIES	279	CHPF2 (ENSMPUG00000008929) #10	SMARCD3 (ENSMPUG00000008936) #11	ENSMPUG00000019970	ENSMPUG00000008950	NUB1 (ENSMPUG00000008958) #12	WDR86 (ENSMPUG00000008970) #14	CRYGN (ENSMPUG00000008987) #15	RHEB (ENSMPUG00000008995) #16	PRKAG2 (ENSMPUG00000009001) #17	ENSMPUG00000009187	GALNTL5 (ENSMPUG00000009200) #18	GALNT11 (ENSMPUG00000009211) #19	KMT2C (ENSMPUG00000009228) #20	CCT8L2 (ENSMPUG00000019972)	XRCC2 (ENSMPUG00000009388) #21	ENSMPUG00000009396 #22	ENSMPUG00000009404	DPP6 (ENSMPUG00000009409) #23	ENSMPUG00000009425	PAXIP1 (ENSMPUG00000009429)	HTR5A (ENSMPUG00000009565)	ENSMPUG00000009574	ENSMPUG00000009578	ENSMPUG00000009588	EN2 (ENSMPUG00000009596)	ENSMPUG00000009599	ENSMPUG00000009610	RBM33 (ENSMPUG00000009616)	ENSMPUG00000009692	ENSMPUG00000009695	ENSMPUG00000009703
American mink	MODERN SPECIES	66	IQCA1L (ENSNVIG00000001225) #8	ABCF2 (ENSNVIG00000001162) #9	CHPF2 (ENSNVIG00000001128) #10	SMARCD3 (ENSNVIG00000001073) #11	NUB1 (ENSNVIG00000001023) #12	WDR86 (ENSNVIG00000001009) #14	CRYGN (ENSNVIG00000000997) #15	RHEB (ENSNVIG00000000981) #16	PRKAG2 (ENSNVIG00000000919) #17	GALNTL5 (ENSNVIG00000000883) #18	ENSNVIG00000000867	GALNT11 (ENSNVIG00000000845) #19	KMT2C (ENSNVIG00000000752) #20	CCT8L2 (ENSNVIG00000000744)	XRCC2 (ENSNVIG00000000730) #21	ENSNVIG00000000712 #22	ENSNVIG00000000702	DPP6 (ENSNVIG00000000483) #23	PAXIP1 (ENSNVIG00000000420)	HTR5A (ENSNVIG00000000414)	INSIG1 (ENSNVIG00000000333)	EN2 (ENSNVIG00000000323)	ENSNVIG00000000304	ENSNVIG00000000244	ENSNVIG00000000213	ENSNVIG00000000208	G5E940 (ENSNVIG00000000072)	ENSNVIG00000022906	LMBR1 (ENSNVIG00000022891)	NOM1 (ENSNVIG00000022884)	MNX1 (ENSNVIG00000022880)
Canidae	ANCESTRAL SPECIES	1	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a.f.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Canis_lupus	ANCESTRAL SPECIES	29	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a.f.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000153430.a.b.m.a	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00390000004871.b.k.a.b	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00950000185351	ENSGT00940000153458.A
Dingo	MODERN SPECIES	77	ENSCAFG00020006253	ABCF2 (ENSCAFG00020005588) #9	CHPF2 (ENSCAFG00020005543) #10	SMARCD3 (ENSCAFG00020005525) #11	NUB1 (ENSCAFG00020005516) #12	ENSCAFG00020005513 #14	CRYGN (ENSCAFG00020005512) #15	RHEB (ENSCAFG00020005505) #16	PRKAG2 (ENSCAFG00020005497) #17	ENSCAFG00020005486	ENSCAFG00020005481 #18	GALNT11 (ENSCAFG00020005465) #19	KMT2C (ENSCAFG00020005391) #20	CCT8L2 (ENSCAFG00020005377)	XRCC2 (ENSCAFG00020005366) #21	ENSCAFG00020005358 #22	ENSCAFG00020005341	ENSCAFG00020005333	DPP6 (ENSCAFG00020005314) #23	PAXIP1 (ENSCAFG00020005286)	HTR5A (ENSCAFG00020005282)	INSIG1 (ENSCAFG00020005265)	EN2 (ENSCAFG00020005257)	ENSCAFG00020005253	ENSCAFG00020005234	ENSCAFG00020005230	ENSCAFG00020005221	SHH (ENSCAFG00020005208)	RNF32 (ENSCAFG00020005170)	LMBR1 (ENSCAFG00020005146)	ENSCAFG00020005139
Dog	MODERN SPECIES	7	ENSCAFG00845010707	ABCF2 (ENSCAFG00845010733) #9	CHPF2 (ENSCAFG00845010813) #10	SMARCD3 (ENSCAFG00845010900) #11	NUB1 (ENSCAFG00845010982) #12	ENSCAFG00845011044 #14	CRYGN (ENSCAFG00845011093) #15	RHEB (ENSCAFG00845011138) #16	PRKAG2 (ENSCAFG00845011242) #17	ENSCAFG00845011458	GALNTL5 (ENSCAFG00845011511) #18	GALNT11 (ENSCAFG00845011586) #19	ENSCAFG00845011655	CCT8L2 (ENSCAFG00845011714)	XRCC2 (ENSCAFG00845011729) #21	ACTR3B (ENSCAFG00845011785) #22	ENSCAFG00845011964	DPP6 (ENSCAFG00845012287) #23	PAXIP1 (ENSCAFG00845012859)	HTR5A (ENSCAFG00845012951)	INSIG1 (ENSCAFG00845012993)	EN2 (ENSCAFG00845013024)	ENSCAFG00845013046	RBM33 (ENSCAFG00845013111)	ENSCAFG00845013219	SHH (ENSCAFG00845013237)	RNF32 (ENSCAFG00845013361)	LMBR1 (ENSCAFG00845013513)	NOM1 (ENSCAFG00845013684)	ENSCAFG00845013708	MNX1 (ENSCAFG00845013721)
Red fox	MODERN SPECIES	14	ENSVVUG00000007717	ABCF2 (ENSVVUG00000007701) #9	CHPF2 (ENSVVUG00000007685) #10	SMARCD3 (ENSVVUG00000007547) #11	NUB1 (ENSVVUG00000007531) #12	WDR86 (ENSVVUG00000007526) #14	ENSVVUG00000007519 #15	RHEB (ENSVVUG00000007512) #16	ENSVVUG00000007492 #17	ENSVVUG00000007480 #17	GALNTL5 (ENSVVUG00000007452) #18	GALNT11 (ENSVVUG00000007439) #19	KMT2C (ENSVVUG00000007309) #20	CCT8L2 (ENSVVUG00000007289)	XRCC2 (ENSVVUG00000007283) #21	ENSVVUG00000007255 #22	DPP6 (ENSVVUG00000003048) #23	PAXIP1 (ENSVVUG00000002777)	HTR5A (ENSVVUG00000002770)	INSIG1 (ENSVVUG00000002755)	ENSVVUG00000002742	RBM33 (ENSVVUG00000002713)	ENSVVUG00000002701	RNF32 (ENSVVUG00000002673)	LMBR1 (ENSVVUG00000002635)	NOM1 (ENSVVUG00000002608)	ENSVVUG00000002583	UBE3C (ENSVVUG00000002515)	DNAJB6 (ENSVVUG00000002461)	ENSVVUG00000002447	ENSVVUG00000002412
Felidae	ANCESTRAL SPECIES	13	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Panthera	ANCESTRAL SPECIES	46	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Tiger	MODERN SPECIES	265	AGAP3 (ENSPTIG00000012996)	GBX1 (ENSPTIG00000013038)	ASB10 (ENSPTIG00000013053) #7	IQCA1L (ENSPTIG00000013076) #8	ABCF2 (ENSPTIG00000013101) #9	ENSPTIG00000013130 #10	SMARCD3 (ENSPTIG00000013138) #11	NUB1 (ENSPTIG00000013162) #12	ENSPTIG00000013238 #15	RHEB (ENSPTIG00000013359) #16	PRKAG2 (ENSPTIG00000013407) #17	GALNTL5 (ENSPTIG00000013607) #18	GALNT11 (ENSPTIG00000013698) #19	KMT2C (ENSPTIG00000013908) #20	XRCC2 (ENSPTIG00000014242) #21	ENSPTIG00000014325 #22
Panthera_a	ANCESTRAL SPECIES	51	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00910000147683	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
lion	MODERN SPECIES	2	H2BK1 (ENSPLOG00000002682)	ABCF2 (ENSPLOG00000002700) #9	CHPF2 (ENSPLOG00000002726) #10	SMARCD3 (ENSPLOG00000002776) #11	NUB1 (ENSPLOG00000002844) #12	WDR86 (ENSPLOG00000002892) #14	CRYGN (ENSPLOG00000002923) #15	RHEB (ENSPLOG00000002939) #16	PRKAG2 (ENSPLOG00000003032) #17	ENSPLOG00000003160	ENSPLOG00000003179	GALNT11 (ENSPLOG00000003190) #19	KMT2C (ENSPLOG00000003238) #20	CCT8L2 (ENSPLOG00000003307)	XRCC2 (ENSPLOG00000003315) #21	ENSPLOG00000003354 #22	ENSPLOG00000003411	DPP6 (ENSPLOG00000003504) #23	ENSPLOG00000003664	PAXIP1 (ENSPLOG00000003689)	HTR5A (ENSPLOG00000003741)	INSIG1 (ENSPLOG00000003752)	EN2 (ENSPLOG00000003765)	ENSPLOG00000003778	RBM33 (ENSPLOG00000003805)	SHH (ENSPLOG00000003828)	RNF32 (ENSPLOG00000003846)	LMBR1 (ENSPLOG00000003872)	NOM1 (ENSPLOG00000003918)	MNX1 (ENSPLOG00000003933)	UBE3C (ENSPLOG00000003946)
leopard	MODERN SPECIES	100	ASB10 (ENSPPRG00000023152) #7	IQCA1L (ENSPPRG00000023462) #8	ABCF2 (ENSPPRG00000023745) #9	CHPF2 (ENSPPRG00000023952) #10	SMARCD3 (ENSPPRG00000024235) #11	NUB1 (ENSPPRG00000024641) #12	ENSPPRG00000019709 #14	ENSPPRG00000018897 #15	RHEB (ENSPPRG00000018707) #16	PRKAG2 (ENSPPRG00000017828) #17	GALNTL5 (ENSPPRG00000012696) #18	GALNT11 (ENSPPRG00000011292) #19	KMT2C (ENSPPRG00000010608) #20	CCT8L2 (ENSPPRG00000016812)	XRCC2 (ENSPPRG00000008124) #21	ENSPPRG00000007943 #22	DPP6 (ENSPPRG00000006688) #23	PAXIP1 (ENSPPRG00000003450)	HTR5A (ENSPPRG00000002723)	INSIG1 (ENSPPRG00000002510)	EN2 (ENSPPRG00000002234)	ENSPPRG00000002064	ENSPPRG00000001926	ENSPPRG00000001556	ENSPPRG00000001410	SHH (ENSPPRG00000001063)	RNF32 (ENSPPRG00000000886)	LMBR1 (ENSPPRG00000000213)	ENSPPRG00000019502	ENSPPRG00000018523	UBE3C (ENSPPRG00000018222)
Cat	MODERN SPECIES	1	H2BK1 (ENSFCAG00000050168)	ABCF2 (ENSFCAG00000013206) #9	CHPF2 (ENSFCAG00000013207) #10	SMARCD3 (ENSFCAG00000013208) #11	NUB1 (ENSFCAG00000013247) #12	WDR86 (ENSFCAG00000028189) #14	RHEB (ENSFCAG00000012862) #16	CRYGN (ENSFCAG00000013249) #15	PRKAG2 (ENSFCAG00000003842) #17	ENSFCAG00000049853	GALNTL5 (ENSFCAG00000004856) #18	GALNT11 (ENSFCAG00000008630) #19	KMT2C (ENSFCAG00000008632) #20	CCT8L2 (ENSFCAG00000037662)	XRCC2 (ENSFCAG00000006857) #21	ENSFCAG00000005546 #22	DPP6 (ENSFCAG00000008374) #23	ENSFCAG00000049554	PAXIP1 (ENSFCAG00000008375)	HTR5A (ENSFCAG00000043931)	INSIG1 (ENSFCAG00000045144)	EN2 (ENSFCAG00000044734)	ENSFCAG00000044976	RBM33 (ENSFCAG00000006602)	SHH (ENSFCAG00000041187)	ENSFCAG00000048424	RNF32 (ENSFCAG00000008206)	LMBR1 (ENSFCAG00000033659)	NOM1 (ENSFCAG00000006467)	ENSFCAG00000047111	MNX1 (ENSFCAG00000044486)
Laurasiatheria_c	ANCESTRAL SPECIES	13	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Equus	ANCESTRAL SPECIES	49	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557.h #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Donkey	MODERN SPECIES	11	H2BK1 (ENSEASG00005031671)	ABCF2 (ENSEASG00005002063) #9	CHPF2 (ENSEASG00005002034) #10	SMARCD3 (ENSEASG00005002024) #11	NUB1 (ENSEASG00005002017) #12	ENSEASG00005002012 #14	CRYGN (ENSEASG00005002002) #15	RHEB (ENSEASG00005001996) #16	PRKAG2 (ENSEASG00005001984) #17	GALNTL5 (ENSEASG00005001973) #18	GALNT11 (ENSEASG00005001958) #19	KMT2C (ENSEASG00005001765) #20	ENSEASG00005028409	ENSEASG00005001720	XRCC2 (ENSEASG00005001714) #21	ENSEASG00005001705 #22	ENSEASG00005024911	DPP6 (ENSEASG00005001682) #23	PAXIP1 (ENSEASG00005001671)	HTR5A (ENSEASG00005001664)	ENSEASG00005025381	EN2 (ENSEASG00005001656)	ENSEASG00005033123	RBM33 (ENSEASG00005001578)	SHH (ENSEASG00005034632)	RNF32 (ENSEASG00005001531)	LMBR1 (ENSEASG00005001525)	NOM1 (ENSEASG00005001489)	MNX1 (ENSEASG00005001480)	ENSEASG00005031811	ENSEASG00005001467
Horse	MODERN SPECIES	25	AGAP3 (ENSECAG00000020859)	GBX1 (ENSECAG00000008832)	ASB10 (ENSECAG00000008842) #7	IQCA1L (ENSECAG00000009491) #8	ABCF2 (ENSECAG00000011102) #9	CHPF2 (ENSECAG00000015899) #10	SMARCD3 (ENSECAG00000017544) #11	NUB1 (ENSECAG00000022109) #12	WDR86 (ENSECAG00000007991) #14	ENSECAG00000008243 #15	PRKAG2 (ENSECAG00000012659) #17	GALNTL5 (ENSECAG00000018932) #18	GALNT11 (ENSECAG00000020636) #19	KMT2C (ENSECAG00000022544) #20	XRCC2 (ENSECAG00000010069) #21	ENSECAG00000010097 #22	DPP6 (ENSECAG00000014484) #23	ENSECAG00000060031	PAXIP1 (ENSECAG00000018110)	HTR5A (ENSECAG00000019251)	INSIG1 (ENSECAG00000020022)	EN2 (ENSECAG00000021744)	ENSECAG00000022036	RBM33 (ENSECAG00000022285)	SHH (ENSECAG00000023075)	RNF32 (ENSECAG00000023936)	LMBR1 (ENSECAG00000024396)	ENSECAG00000048794	NOM1 (ENSECAG00000007596)	MNX1 (ENSECAG00000030814)	UBE3C (ENSECAG00000008395)
Chiroptera	ANCESTRAL SPECIES	53	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Megabat	MODERN SPECIES	607																ENSPVAG00000017484 #22
Microchiroptera	ANCESTRAL SPECIES	23	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Microbat	MODERN SPECIES	1354										GALNTL5 (ENSMLUG00000008822) #18	ENSMLUG00000006202 #19	KMT2C (ENSMLUG00000010947) #20	CCT8L2 (ENSMLUG00000000062)	XRCC2 (ENSMLUG00000014886) #21	ENSMLUG00000029333	ENSMLUG00000004212 #22
Greater horseshoe bat	MODERN SPECIES	18	IQCA1L (ENSRFEG00010018923) #8	H2BK1 (ENSRFEG00010018889)	ABCF2 (ENSRFEG00010018857) #9	CHPF2 (ENSRFEG00010018797) #10	SMARCD3 (ENSRFEG00010018701) #11	NUB1 (ENSRFEG00010018655) #12	WDR86 (ENSRFEG00010018622) #14	ENSRFEG00010018498 #15	RHEB (ENSRFEG00010018447) #16	PRKAG2 (ENSRFEG00010018163) #17	GALNTL5 (ENSRFEG00010018045) #18	GALNT11 (ENSRFEG00010017974) #19	KMT2C (ENSRFEG00010017912) #20	CCT8L2 (ENSRFEG00010017848)	XRCC2 (ENSRFEG00010017820) #21	ENSRFEG00010017713 #22	DPP6 (ENSRFEG00010016867) #23	PAXIP1 (ENSRFEG00010016821)	HTR5A (ENSRFEG00010016776)	INSIG1 (ENSRFEG00010016730)	EN2 (ENSRFEG00010016660)	ENSRFEG00010016600	ENSRFEG00010016506	ENSRFEG00010016477	ENSRFEG00010016456	SHH (ENSRFEG00010016418)	RNF32 (ENSRFEG00010016347)	LMBR1 (ENSRFEG00010016162)	NOM1 (ENSRFEG00010015988)	MNX1 (ENSRFEG00010015910)	UBE3C (ENSRFEG00010015678)
Artiodactyla	ANCESTRAL SPECIES	11	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Suina	ANCESTRAL SPECIES	19	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT01100000263477.B.d.a.c	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a	ENSGT00490000043432
Chacoan peccary	MODERN SPECIES	897														CCT8L2 (ENSCWAG00000004165)	XRCC2 (ENSCWAG00000004181) #21	ENSCWAG00000004209 #22	DPP6 (ENSCWAG00000004337) #23	PAXIP1 (ENSCWAG00000005144)	INSIG1 (ENSCWAG00000005266)	EN2 (ENSCWAG00000005293)	ENSCWAG00000005316	ENSCWAG00000005372	ENSCWAG00000005441	SHH (ENSCWAG00000005469)	RNF32 (ENSCWAG00000005489)	LMBR1 (ENSCWAG00000005598)	NOM1 (ENSCWAG00000005805)	MNX1 (ENSCWAG00000005836)	UBE3C (ENSCWAG00000005871)	DNAJB6 (ENSCWAG00000005928)
Pig	MODERN SPECIES	9	ABCF2 (ENSSSCG00000016441) #9	CHPF2 (ENSSSCG00000016436) #10	SMARCD3 (ENSSSCG00000016435) #11	NUB1 (ENSSSCG00000016438) #12	WDR86 (ENSSSCG00000016437) #14	CRYGN (ENSSSCG00000038413) #15	RHEB (ENSSSCG00000016434) #16	ENSSSCG00000016433	PRKAG2 (ENSSSCG00000016432) #17	GALNTL5 (ENSSSCG00000016431) #18	GALNT11 (ENSSSCG00000016430) #19	KMT2C (ENSSSCG00000020663) #20	CCT8L2 (ENSSSCG00000016428)	ENSSSCG00000055167	XRCC2 (ENSSSCG00000032315) #21	ENSSSCG00000016426 #22	ENSSSCG00000040865	DPP6 (ENSSSCG00000016423) #23	PAXIP1 (ENSSSCG00000025221)	INSIG1 (ENSSSCG00000016420)	EN2 (ENSSSCG00000035324)	ENSSSCG00000043069	ENSSSCG00000061194	ENSSSCG00000057427	SHH (ENSSSCG00000016416)	ENSSSCG00000016414	LMBR1 (ENSSSCG00000016412)	NOM1 (ENSSSCG00000016411)	MNX1 (ENSSSCG00000016410)	ENSSSCG00000044842	UBE3C (ENSSSCG00000016409)
Artiodactyla_a	ANCESTRAL SPECIES	11	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Artiodactyla_b	ANCESTRAL SPECIES	11	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Cetacea	ANCESTRAL SPECIES	13	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00390000007225.g.a.a	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Odontoceti	ANCESTRAL SPECIES	12	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00390000007225.g.a.a	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Odontoceti_a	ANCESTRAL SPECIES	32	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00390000007225.g.a.a	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156.c #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.g	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Dolphin	MODERN SPECIES	367																ACTR3B (ENSTTRG00000016334) #22
Odontoceti_b	ANCESTRAL SPECIES	13	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00390000007225.g.a.a	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156.c #18	ENSGT00940000158227 #19	ENSGT00950000182891.a.a.b.a.b.a.h.a	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.g	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Monodontidae	ANCESTRAL SPECIES	12	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00390000007225.g.a.a	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156.c #18	ENSGT00940000158227 #19	ENSGT00950000182891.a.a.b.a.b.a.h.a	ENSGT00940000155281 #20	ENSGT00390000001347.v.n.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.g	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00940000155065.lb.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Beluga whale	MODERN SPECIES	72	CHPF2 (ENSDLEG00000016859) #10	SMARCD3 (ENSDLEG00000016770) #11	NUB1 (ENSDLEG00000016649) #12	WDR86 (ENSDLEG00000016625) #14	CRYGN (ENSDLEG00000016607) #15	ENSDLEG00000016601	RHEB (ENSDLEG00000016580) #16	ENSDLEG00000016541 #17	ENSDLEG00000016527 ##17	ENSDLEG00000016490 #18	GALNT11 (ENSDLEG00000016423) #19	ENSDLEG00000016412	KMT2C (ENSDLEG00000015997) #20	ENSDLEG00000015939	XRCC2 (ENSDLEG00000015930) #21	ACTR3B (ENSDLEG00000015872) #22	VPS26A (ENSDLEG00000015854)	DPP6 (ENSDLEG00000015018) #23	PAXIP1 (ENSDLEG00000014965)	HTR5A (ENSDLEG00000014954)	ENSDLEG00000014937	EN2 (ENSDLEG00000014927)	CNPY1 (ENSDLEG00000014918)	ENSDLEG00000014861	ENSDLEG00000014850	SHH (ENSDLEG00000014841)	ENSDLEG00000014824	RNF32 (ENSDLEG00000014766)	LMBR1 (ENSDLEG00000014735)	NOM1 (ENSDLEG00000014714)	MNX1 (ENSDLEG00000014696)
Narwhal	MODERN SPECIES	306	ABCF2 (ENSMMNG00015011216) #9	CHPF2 (ENSMMNG00015011246) #10	SMARCD3 (ENSMMNG00015011276) #11	NUB1 (ENSMMNG00015011322) #12	WDR86 (ENSMMNG00015011331) #14	CRYGN (ENSMMNG00015011347) #15	RHEB (ENSMMNG00015011357) #16	PRKAG2 (ENSMMNG00015011390) #17	GALNTL5 (ENSMMNG00015011442) #18	GALNT11 (ENSMMNG00015011465) #19	KMT2C (ENSMMNG00015011514) #20	ENSMMNG00015011602	ENSMMNG00015011618	XRCC2 (ENSMMNG00015011631) #21	ENSMMNG00015011641	ENSMMNG00015011677 #22	VPS26A (ENSMMNG00015011731)	DPP6 (ENSMMNG00015011821) #23	PAXIP1 (ENSMMNG00015012048)	ENSMMNG00015012070	HTR5A (ENSMMNG00015012085)	INSIG1 (ENSMMNG00015012094)	EN2 (ENSMMNG00015012105)	ENSMMNG00015012121	RBM33 (ENSMMNG00015012160)	ENSMMNG00015012215	ENSMMNG00015012228	RNF32 (ENSMMNG00015012241)	LMBR1 (ENSMMNG00015012265)	NOM1 (ENSMMNG00015012290)	MNX1 (ENSMMNG00015012314)
Vaquita	MODERN SPECIES	20	IQCA1L (ENSPSNG00000005327) #8	ABCF2 (ENSPSNG00000005283) #9	CHPF2 (ENSPSNG00000005227) #10	SMARCD3 (ENSPSNG00000005169) #11	NUB1 (ENSPSNG00000005137) #12	WDR86 (ENSPSNG00000005119) #14	CRYGN (ENSPSNG00000005096) #15	ENSPSNG00000005085	RHEB (ENSPSNG00000005066) #16	PRKAG2 (ENSPSNG00000004954) #17	GALNTL5 (ENSPSNG00000004886) #18	GALNT11 (ENSPSNG00000004845) #19	ENSPSNG00000004819	ENSPSNG00000004796	XRCC2 (ENSPSNG00000004702) #21	ENSPSNG00000004645 #22	DPP6 (ENSPSNG00000004321) #23	PAXIP1 (ENSPSNG00000011584)	HTR5A (ENSPSNG00000011521)	INSIG1 (ENSPSNG00000011487)	EN2 (ENSPSNG00000011442)	ENSPSNG00000011324	RBM33 (ENSPSNG00000011237)	SHH (ENSPSNG00000011156)	ENSPSNG00000011099	RNF32 (ENSPSNG00000011036)	LMBR1 (ENSPSNG00000010950)	NOM1 (ENSPSNG00000010865)	MNX1 (ENSPSNG00000010812)	UBE3C (ENSPSNG00000010638)	DNAJB6 (ENSPSNG00000010380)
Sperm whale	MODERN SPECIES	16	SLC4A2 (ENSPCTG00005011841)	FASTK (ENSPCTG00005011652)	TMUB1 (ENSPCTG00005011591)	AGAP3 (ENSPCTG00005011325)	ABCF2 (ENSPCTG00005010604) #9	H2BK1 (ENSPCTG00005010532)	NUB1 (ENSPCTG00005010493) #12	CRYGN (ENSPCTG00005010433) #15	RHEB (ENSPCTG00005010342) #16	PRKAG2 (ENSPCTG00005009961) #17	GALNTL5 (ENSPCTG00005009865) #18	GALNT11 (ENSPCTG00005009799) #19	ENSPCTG00005009773	KMT2C (ENSPCTG00005008586) #20	XRCC2 (ENSPCTG00005008485) #21	ACTR3B (ENSPCTG00005008420) #22	ENSPCTG00005008391	DPP6 (ENSPCTG00005007889) #23	PAXIP1 (ENSPCTG00005007795)	HTR5A (ENSPCTG00005007776)	INSIG1 (ENSPCTG00005007737)	EN2 (ENSPCTG00005007717)	ENSPCTG00005007688	RBM33 (ENSPCTG00005007636)	SHH (ENSPCTG00005007615)	ENSPCTG00005007606	RNF32 (ENSPCTG00005007584)	LMBR1 (ENSPCTG00005007391)	NOM1 (ENSPCTG00005007325)	MNX1 (ENSPCTG00005007274)	UBE3C (ENSPCTG00005007142)
Blue whale	MODERN SPECIES	20	SMARCD3 (ENSBMSG00010012184) #11	NUB1 (ENSBMSG00010012152) #12	WDR86 (ENSBMSG00010012134) #14	CRYGN (ENSBMSG00010012122) #15	ENSBMSG00010012111	RHEB (ENSBMSG00010012094) #16	ENSBMSG00010012069	PRKAG2 (ENSBMSG00010012026) #17	ENSBMSG00010011990	GALNTL5 (ENSBMSG00010011977) #18	GALNT11 (ENSBMSG00010011957) #19	ENSBMSG00010011949	KMT2C (ENSBMSG00010011885) #20	XRCC2 (ENSBMSG00010011849) #21	ENSBMSG00010011834	ENSBMSG00010011791 #22	ENSBMSG00010011763	ENSBMSG00010011738	DPP6 (ENSBMSG00010011416) #23	PAXIP1 (ENSBMSG00010011138)	HTR5A (ENSBMSG00010011100)	INSIG1 (ENSBMSG00010011082)	EN2 (ENSBMSG00010011067)	ENSBMSG00010011052	RBM33 (ENSBMSG00010011000)	SHH (ENSBMSG00010010970)	ENSBMSG00010010938	RNF32 (ENSBMSG00010010901)	LMBR1 (ENSBMSG00010010821)	NOM1 (ENSBMSG00010010740)	MNX1 (ENSBMSG00010010704)
Pecora	ANCESTRAL SPECIES	11	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT01010000223738	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.a	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Yarkand deer	MODERN SPECIES	9	H2BK1 (ENSCHYG00000025712)	ABCF2 (ENSCHYG00000025724) #9	CHPF2 (ENSCHYG00000025749) #10	SMARCD3 (ENSCHYG00000025775) #11	ENSCHYG00000025805 #12	WDR86 (ENSCHYG00000025818) #14	CRYGN (ENSCHYG00000025847) #15	ENSCHYG00000025861 #16	PRKAG2 (ENSCHYG00000025875) #17	GALNTL5 (ENSCHYG00000025948) #18	ENSCHYG00000025975 #19	KMT2C (ENSCHYG00000026122) #20	CCT8L2 (ENSCHYG00000013512)	ENSCHYG00000013526	XRCC2 (ENSCHYG00000013567) #21	ENSCHYG00000013620 #22	DPP6 (ENSCHYG00000013990) #23	PAXIP1 (ENSCHYG00000015587)	HTR5A (ENSCHYG00000015878)	ENSCHYG00000016053	EN2 (ENSCHYG00000016222)	ENSCHYG00000016247	ENSCHYG00000016370	ENSCHYG00000016530	ENSCHYG00000016480	RNF32 (ENSCHYG00000016595)	LMBR1 (ENSCHYG00000016795)	NOM1 (ENSCHYG00000017147)	UBE3C (ENSCHYG00000017319)	DNAJB6 (ENSCHYG00000017620)	ENSCHYG00000017780
Percora_a	ANCESTRAL SPECIES	11	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT01010000223738	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.a	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Bovidae	ANCESTRAL SPECIES	12	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT01010000223738	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.a	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Caprinae	ANCESTRAL SPECIES	47	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.a	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00940000154095.b.a
Goat	MODERN SPECIES	23	IQCA1L (ENSCHIG00000018006) #8	H2BK1 (ENSCHIG00000012881)	ABCF2 (ENSCHIG00000025680) #9	CHPF2 (ENSCHIG00000014448) #10	SMARCD3 (ENSCHIG00000024917) #11	NUB1 (ENSCHIG00000010018) #12	WDR86 (ENSCHIG00000018401) #14	CRYGN (ENSCHIG00000027202) #15	RHEB (ENSCHIG00000017350) #16	PRKAG2 (ENSCHIG00000024028) #17	GALNTL5 (ENSCHIG00000019057) #18	GALNT11 (ENSCHIG00000026778) #19	KMT2C (ENSCHIG00000012628) #20	CCT8L2 (ENSCHIG00000010339)	XRCC2 (ENSCHIG00000024225) #21	ENSCHIG00000026843 #22	ENSCHIG00000019499	DPP6 (ENSCHIG00000006632) #23	PAXIP1 (ENSCHIG00000020313)	HTR5A (ENSCHIG00000011892)	INSIG1 (ENSCHIG00000023323)	EN2 (ENSCHIG00000017008)	ENSCHIG00000011221	RBM33 (ENSCHIG00000012513)	SHH (ENSCHIG00000023555)	RNF32 (ENSCHIG00000019658)	LMBR1 (ENSCHIG00000014826)	NOM1 (ENSCHIG00000020102)	MNX1 (ENSCHIG00000014024)	UBE3C (ENSCHIG00000014768)	ENSCHIG00000018037
Rambouillet Sheep	MODERN SPECIES	20	CHPF2 (ENSOARG00020015638) #10	ASB10 (ENSOARG00020015699) #7	IQCA1L (ENSOARG00020015938) #8	H2BK1 (ENSOARG00020016084)	ABCF2 (ENSOARG00020016106) #9	SMARCD3 (ENSOARG00020016209) #11	NUB1 (ENSOARG00020016427) #12	WDR86 (ENSOARG00020016555) #14	CRYGN (ENSOARG00020016653) #15	RHEB (ENSOARG00020016712) #16	PRKAG2 (ENSOARG00020016773) #17	GALNTL5 (ENSOARG00020017347) #18	GALNT11 (ENSOARG00020017410) #19	KMT2C (ENSOARG00020017517) #20	XRCC2 (ENSOARG00020018428) #21	ENSOARG00020018455 #22	DPP6 (ENSOARG00020018767) #23	PAXIP1 (ENSOARG00020020495)	HTR5A (ENSOARG00020021673)	INSIG1 (ENSOARG00020021923)	EN2 (ENSOARG00020021934)	ENSOARG00020021953	ENSOARG00020022000	ENSOARG00020022139	SHH (ENSOARG00020022160)	RNF32 (ENSOARG00020022205)	LMBR1 (ENSOARG00020022336)	MNX1 (ENSOARG00020022488)	UBE3C (ENSOARG00020022536)	NCAPG2 (ENSOARG00020006925)	ESYT2 (ENSOARG00020007318)
Bovinae	ANCESTRAL SPECIES	8	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00940000174020.b	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT01010000223738	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00390000009113.a.a.k.b.c	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.a	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Bos	ANCESTRAL SPECIES	8	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557.e #12	ENSGT00940000174020.b	ENSGT00390000010557.f #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT01010000223738	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00390000009113.a.a.k.b.c	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.b	ENSGT00940000161119.e.a	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a
Bos_a	ANCESTRAL SPECIES	37	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557.e #12	ENSGT00390000010557.f #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00390000009113.a.a.k.b.c	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.a	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h
Wild yak	MODERN SPECIES	2098												GALNTL5 (ENSBMUG00000005511) #18	GALNT11 (ENSBMUG00000005577) #19	KMT2C (ENSBMUG00000005798) #20	XRCC2 (ENSBMUG00000005898) #21	ENSBMUG00000005932 #22
Domestic yak	MODERN SPECIES	23	IQCA1L (ENSBGRG00000006649) #8	ABCF2 (ENSBGRG00000006782) #9	CHPF2 (ENSBGRG00000006836) #10	SMARCD3 (ENSBGRG00000006961) #11	NUB1 (ENSBGRG00000007414) #12	WDR86 (ENSBGRG00000007613) #14	CRYGN (ENSBGRG00000007698) #15	RHEB (ENSBGRG00000007747) #16	PRKAG2 (ENSBGRG00000007895) #17	GALNTL5 (ENSBGRG00000008195) #18	GALNT11 (ENSBGRG00000008338) #19	KMT2C (ENSBGRG00000008413) #20	ENSBGRG00000008491	CCT8L2 (ENSBGRG00000008514)	XRCC2 (ENSBGRG00000008528) #21	ENSBGRG00000008613 #22	ENSBGRG00000008866	DPP6 (ENSBGRG00000008941) #23	ENSBGRG00000010048	PAXIP1 (ENSBGRG00000010084)	ENSBGRG00000010638	INSIG1 (ENSBGRG00000010766)	EN2 (ENSBGRG00000010916)	ENSBGRG00000010955	ENSBGRG00000011077	RBM33 (ENSBGRG00000011152)	SHH (ENSBGRG00000011761)	RNF32 (ENSBGRG00000011799)	LMBR1 (ENSBGRG00000012112)	NOM1 (ENSBGRG00000012801)	MNX1 (ENSBGRG00000012974)
Bos_b	ANCESTRAL SPECIES	7	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00940000174020.b	ENSGT00390000010557.f #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT01010000223738	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00390000009113.a.a.k.b.c	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119.e.b	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Hybrid Bos Indicus	MODERN SPECIES	23	ABCF2 (ENSBIXG00005014490) #9	ENSBIXG00005014498	CHPF2 (ENSBIXG00005014539) #10	SMARCD3 (ENSBIXG00005002031) #11	ENSBIXG00005014608	NUB1 (ENSBIXG00005014623) #12	WDR86 (ENSBIXG00005002048) #14	CRYGN (ENSBIXG00005014677) #15	RHEB (ENSBIXG00005014716) #16	PRKAG2 (ENSBIXG00005006133) #17	GALNTL5 (ENSBIXG00005015014) #18	GALNT11 (ENSBIXG00005015098) #19	KMT2C (ENSBIXG00005015371) #20	CCT8L2 (ENSBIXG00005007318)	XRCC2 (ENSBIXG00005015470) #21	ENSBIXG00005002349 #22	ENSBIXG00005015650	DPP6 (ENSBIXG00005016005) #23	PAXIP1 (ENSBIXG00005016085)	ENSBIXG00005016093	HTR5A (ENSBIXG00005016107)	INSIG1 (ENSBIXG00005016175)	EN2 (ENSBIXG00005016206)	ENSBIXG00005016227	RBM33 (ENSBIXG00005006571)	SHH (ENSBIXG00005016323)	RNF32 (ENSBIXG00005016410)	LMBR1 (ENSBIXG00005016491)	NOM1 (ENSBIXG00005002662)	MNX1 (ENSBIXG00005016541)	UBE3C (ENSBIXG00005016672)
Cow	MODERN SPECIES	23	ABCF2 (ENSBTAG00000000607) #9	CHPF2 (ENSBTAG00000014371) #10	SMARCD3 (ENSBTAG00000014372) #11	ENSBTAG00000048514	NUB1 (ENSBTAG00000004540) #12	WDR86 (ENSBTAG00000006232) #14	CRYGN (ENSBTAG00000003019) #15	RHEB (ENSBTAG00000031861) #16	PRKAG2 (ENSBTAG00000002917) #17	GALNTL5 (ENSBTAG00000045535) #18	GALNT11 (ENSBTAG00000021260) #19	KMT2C (ENSBTAG00000024199) #20	CCT8L2 (ENSBTAG00000014871)	ENSBTAG00000019597	XRCC2 (ENSBTAG00000030897) #21	ACTR3B (ENSBTAG00000008032) #22	ENSBTAG00000009002	DPP6 (ENSBTAG00000021941) #23	PAXIP1 (ENSBTAG00000017505)	HTR5A (ENSBTAG00000002891)	INSIG1 (ENSBTAG00000001592)	EN2 (ENSBTAG00000018917)	CNPY1 (ENSBTAG00000000397)	RBM33 (ENSBTAG00000010243)	SHH (ENSBTAG00000024552)	RNF32 (ENSBTAG00000020335)	LMBR1 (ENSBTAG00000030817)	NOM1 (ENSBTAG00000016435)	MNX1 (ENSBTAG00000030876)	UBE3C (ENSBTAG00000008025)	DNAJB6 (ENSBTAG00000000771)
American bison	MODERN SPECIES	3293	ENSBBBG00000001354	ABCF2 (ENSBBBG00000001327) #9	CHPF2 (ENSBBBG00000001310) #10	SMARCD3 (ENSBBBG00000001258) #11	ENSBBBG00000015320	NUB1 (ENSBBBG00000015340) #12	WDR86 (ENSBBBG00000003820) #14	CRYGN (ENSBBBG00000015352) #15	ENSBBBG00000015362 #16	PRKAG2 (ENSBBBG00000001246) #17	ENSBBBG00000015385 ##17	GALNTL5 (ENSBBBG00000002728) #18	GALNT11 (ENSBBBG00000015426) #19	KMT2C (ENSBBBG00000015535) #20	XRCC2 (ENSBBBG00000003877) #21	ENSBBBG00000006993 #22	ENSBBBG00000015597	ZNF215 (ENSBBBG00000003898)	OR2D3 (ENSBBBG00000003472)	OR2D2 (ENSBBBG00000003468)	OR10A4 (ENSBBBG00000003466)	ENSBBBG00000003463	ENSBBBG00000003453	ENSBBBG00000003441	ENSBBBG00000003437	ENSBBBG00000003434	OR6A2 (ENSBBBG00000003428)
Siberian musk deer	MODERN SPECIES	302	IQCA1L (ENSMMSG00000010011) #8	ENSMMSG00000009985	ABCF2 (ENSMMSG00000009907) #9	CHPF2 (ENSMMSG00000009840) #10	SMARCD3 (ENSMMSG00000009749) #11	NUB1 (ENSMMSG00000009723) #12	WDR86 (ENSMMSG00000009684) #14	CRYGN (ENSMMSG00000009651) #15	RHEB (ENSMMSG00000009606) #16	PRKAG2 (ENSMMSG00000009412) #17	GALNTL5 (ENSMMSG00000009329) #18	GALNT11 (ENSMMSG00000009289) #19	KMT2C (ENSMMSG00000008600) #20	CCT8L2 (ENSMMSG00000008518)	XRCC2 (ENSMMSG00000008501) #21	ENSMMSG00000008408 #22	DPP6 (ENSMMSG00000007730) #23	PAXIP1 (ENSMMSG00000007585)	HTR5A (ENSMMSG00000007561)	INSIG1 (ENSMMSG00000007539)	EN2 (ENSMMSG00000007514)	ENSMMSG00000007461	ENSMMSG00000007453	RBM33 (ENSMMSG00000007384)	SHH (ENSMMSG00000007351)	RNF32 (ENSMMSG00000007083)	LMBR1 (ENSMMSG00000006852)	NOM1 (ENSMMSG00000006749)	MNX1 (ENSMMSG00000006716)	UBE3C (ENSMMSG00000006524)	DNAJB6 (ENSMMSG00000006445)
Camelidae	ANCESTRAL SPECIES	75	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT01100000263569.a.a	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205.h	ENSGT00490000043432
Alpaca	DUPLICATION
Alpaca	MODERN SPECIES	459																ENSVPAG00000010875 #22
Alpaca	MODERN SPECIES	3858																ENSVPAG00000008861 #22
Arabian camel	MODERN SPECIES	33	ABCF2 (ENSCDRG00005011475) #9	CHPF2 (ENSCDRG00005011532) #10	SMARCD3 (ENSCDRG00005011690) #11	NUB1 (ENSCDRG00005011838) #12	WDR86 (ENSCDRG00005011910) #14	CRYGN (ENSCDRG00005011967) #15	RHEB (ENSCDRG00005012087) #16	PRKAG2 (ENSCDRG00005012173) #17	ENSCDRG00005012382	GALNTL5 (ENSCDRG00005012442) #18	GALNT11 (ENSCDRG00005012674) #19	KMT2C (ENSCDRG00005012745) #20	ENSCDRG00005012962	ENSCDRG00005013019	XRCC2 (ENSCDRG00005013049) #21	ENSCDRG00005013078 #22	DPP6 (ENSCDRG00005013198) #23	PAXIP1 (ENSCDRG00005013615)	HTR5A (ENSCDRG00005014031)	ENSCDRG00005014072	INSIG1 (ENSCDRG00005014184)	EN2 (ENSCDRG00005014291)	ENSCDRG00005014336	ENSCDRG00005014413	ENSCDRG00005014528	ENSCDRG00005014567	SHH (ENSCDRG00005014595)	RNF32 (ENSCDRG00005014641)	LMBR1 (ENSCDRG00005014720)	NOM1 (ENSCDRG00005014916)	MNX1 (ENSCDRG00005015149)
Atlantogenata	ANCESTRAL SPECIES	90	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000165657	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Xenarthra	DUPLICATION
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000158304.u #22
Sloth	MODERN SPECIES	762																ENSCHOG00000007730 #22
Armadillo	MODERN SPECIES	1789																ENSDNOG00000019288 #22
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000158304.v #22
Sloth	MODERN SPECIES	2609																ENSCHOG00000011282 #22
Afrotheria	ANCESTRAL SPECIES	206											ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a
Tenrec	MODERN SPECIES	2929																ENSETEG00000005367 #22
Afrotheria_a	ANCESTRAL SPECIES	206											ENSGT00940000162156 #18	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a
Hyrax	MODERN SPECIES	11897																ENSPCAG00000013907 #22
Elephant	MODERN SPECIES	49	CHPF2 (ENSLAFG00000008676) #10	SMARCD3 (ENSLAFG00000008678) #11	NUB1 (ENSLAFG00000007232) #12	WDR86 (ENSLAFG00000007235) #14	CRYGN (ENSLAFG00000012102) #15	RHEB (ENSLAFG00000000691) #16	PRKAG2 (ENSLAFG00000012000) #17	ENSLAFG00000028452	ENSLAFG00000029089	GALNTL5 (ENSLAFG00000005565) #18	GALNT11 (ENSLAFG00000007896) #19	ENSLAFG00000028663 #20	ENSLAFG00000007897 #20	CCT8L2 (ENSLAFG00000000826)	XRCC2 (ENSLAFG00000022383) #21	ENSLAFG00000007220 #22	ENSLAFG00000029909	ENSLAFG00000011167 #23	PAXIP1 (ENSLAFG00000011530)	HTR5A (ENSLAFG00000000821)	INSIG1 (ENSLAFG00000028120)
Marsupialia	ANCESTRAL SPECIES	4	ENSGT00940000154365.a.a	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000165471
Marsupialia_b	ANCESTRAL SPECIES	10	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000165841	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000165471
Diprotodontia	ANCESTRAL SPECIES	41	ENSGT00940000154365.a.a	ENSGT00940000158974 #7	ENSGT00940000154067.d #8	ENSGT00630000089910 #9	ENSGT01050000244857.B.a #10	ENSGT00940000158945 #11	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00490000043432
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00940000160158	ENSGT00390000012084	ENSGT01030000234592.B	ENSGT00950000183168.A	ENSGT00940000161737.n.b.a	ENSGT00940000159074	ENSGT00530000063695.a	ENSGT00940000153669.a.a	ENSGT00950000183201.a	ENSGT00390000004986	ENSGT00940000161513	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000163221	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00390000008142.d	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Common wonbat	MODERN SPECIES	1078	H2BK1 (ENSVURG00010008015)	CHPF2 (ENSVURG00010008023) #10	SMARCD3 (ENSVURG00010008048) #11	NUB1 (ENSVURG00010008064) #12	WDR86 (ENSVURG00010008079) #14	CRYGN (ENSVURG00010008095) #15	RHEB (ENSVURG00010008110) #16	PRKAG2 (ENSVURG00010008136) #17	ENSVURG00010008159	ENSVURG00010008171	ENSVURG00010008177 #19	ENSVURG00010008190 #19	KMT2C (ENSVURG00010008237) #20	CCT8L2 (ENSVURG00010008290)	XRCC2 (ENSVURG00010008303) #21	ENSVURG00010008306 #22	DPP6 (ENSVURG00010008370) #23	PAXIP1 (ENSVURG00010009000)	HTR5A (ENSVURG00010009022)	INSIG1 (ENSVURG00010009036)	EN2 (ENSVURG00010009048)	ENSVURG00010009059	RBM33 (ENSVURG00010009090)	SHH (ENSVURG00010009153)	RNF32 (ENSVURG00010009165)	LMBR1 (ENSVURG00010009194)	ENSVURG00010009217	NOM1 (ENSVURG00010009225)	MNX1 (ENSVURG00010009257)	UBE3C (ENSVURG00010009275)	DNAJB6 (ENSVURG00010009313)
koala	MODERN SPECIES	138								ENSPCIG00000035853	PRKAG2 (ENSPCIG00000028690) #17	ENSPCIG00000028692	GALNT11 (ENSPCIG00000012247) #19	KMT2C (ENSPCIG00000012259) #20	CCT8L2 (ENSPCIG00000012384)	ENSPCIG00000031504	XRCC2 (ENSPCIG00000012386) #21	ENSPCIG00000007563 #22	DPP6 (ENSPCIG00000017463) #23	PAXIP1 (ENSPCIG00000017461)	HTR5A (ENSPCIG00000017460)	INSIG1 (ENSPCIG00000000292)	EN2 (ENSPCIG00000000313)	ENSPCIG00000000432	ENSPCIG00000003326	SHH (ENSPCIG00000003301)	RNF32 (ENSPCIG00000027952)	LMBR1 (ENSPCIG00000027948)	ENSPCIG00000027945	NOM1 (ENSPCIG00000027941)	MNX1 (ENSPCIG00000027938)	UBE3C (ENSPCIG00000027933)	ENSPCIG00000027925
Wallaby	MODERN SPECIES	3910																ENSMEUG00000004885 #22
Tasmanian devil	MODERN SPECIES	4	IQCA1L (ENSSHAG00000010798) #8	ABCF2 (ENSSHAG00000026509) #9	CHPF2 (ENSSHAG00000030730) #10	SMARCD3 (ENSSHAG00000010902) #11	NUB1 (ENSSHAG00000024749) #12	WDR86 (ENSSHAG00000000937) #14	CRYGN (ENSSHAG00000002943) #15	RHEB (ENSSHAG00000021716) #16	PRKAG2 (ENSSHAG00000025309) #17	ENSSHAG00000030338	ENSSHAG00000029506	ENSSHAG00000011660 #19	KMT2C (ENSSHAG00000011852) #20	ENSSHAG00000013137	XRCC2 (ENSSHAG00000014123) #21	ENSSHAG00000014717 #22	ENSSHAG00000026902	ENSSHAG00000030988	ENSSHAG00000004913 #23	ENSSHAG00000031876 #23	PAXIP1 (ENSSHAG00000010983)	HTR5A (ENSSHAG00000011711)	INSIG1 (ENSSHAG00000013105)	EN2 (ENSSHAG00000025988)	ENSSHAG00000014325	RBM33 (ENSSHAG00000015046)	SHH (ENSSHAG00000015579)	RNF32 (ENSSHAG00000017594)	LMBR1 (ENSSHAG00000017702)	NOM1 (ENSSHAG00000017998)	MNX1 (ENSSHAG00000018063)
Opossum	MODERN SPECIES	7	ABCF2 (ENSMODG00000004420) #9	CHPF2 (ENSMODG00000004429) #10	SMARCD3 (ENSMODG00000004451) #11	ENSMODG00000024179	NUB1 (ENSMODG00000004476) #12	WDR86 (ENSMODG00000004545) #14	CRYGN (ENSMODG00000004555) #15	RHEB (ENSMODG00000048800) #16	PRKAG2 (ENSMODG00000004614) #17	GALNT11 (ENSMODG00000004710) #19	ENSMODG00000004731 #20	ENSMODG00000004745	ENSMODG00000038744	ENSMODG00000024163	XRCC2 (ENSMODG00000045998) #21	ENSMODG00000004852 #22	DPP6 (ENSMODG00000004898) #23	ENSMODG00000050513	PAXIP1 (ENSMODG00000004929)	HTR5A (ENSMODG00000004969)	ENSMODG00000042569	INSIG1 (ENSMODG00000004974)	EN2 (ENSMODG00000004978)	ENSMODG00000004981	RBM33 (ENSMODG00000005006)	SHH (ENSMODG00000005028)	RNF32 (ENSMODG00000005073)	LMBR1 (ENSMODG00000005081)	ENSMODG00000049270	ENSMODG00000005104	NOM1 (ENSMODG00000005177)
Platypus	MODERN SPECIES	4	ASB10 (ENSOANG00000002663) #7	IQCA1L (ENSOANG00000006182) #8	H2BK1 (ENSOANG00000040961)	ABCF2 (ENSOANG00000006180) #9	ENSOANG00000047774 #10	SMARCD3 (ENSOANG00000038018) #11	NUB1 (ENSOANG00000006176) #12	WDR86 (ENSOANG00000006174) #14	ENSOANG00000050042 #15	RHEB (ENSOANG00000048639) #16	PRKAG2 (ENSOANG00000006167) #17	JRKL (ENSOANG00000006169)	GALNT11 (ENSOANG00000006165) #19	KMT2C (ENSOANG00000006160) #20	XRCC2 (ENSOANG00000006159) #21	ENSOANG00000006158 #22	DPP6 (ENSOANG00000006155) #23	PAXIP1 (ENSOANG00000006152)	HTR5A (ENSOANG00000006151)	INSIG1 (ENSOANG00000049293)	EN2 (ENSOANG00000048141)	ENSOANG00000021339	RBM33 (ENSOANG00000006147)	SHH (ENSOANG00000047346)	RNF32 (ENSOANG00000045663)	ENSOANG00000045729	LMBR1 (ENSOANG00000006141)	ENSOANG00000006139	MNX1 (ENSOANG00000037233)	UBE3C (ENSOANG00000006137)	DNAJB6 (ENSOANG00000006132)
Sauria	ANCESTRAL SPECIES	15	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Archelosauria	ANCESTRAL SPECIES	6	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Archosauria	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Aves	ANCESTRAL SPECIES	5	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000173575	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Neognathae	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000173575	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Neognathae_b	ANCESTRAL SPECIES	9	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Neognathae_c	ANCESTRAL SPECIES	12	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000165471	ENSGT00490000043432
Golden eagle	MODERN SPECIES	19	ENSACCG00020003412	ENSACCG00020003381	ENSACCG00020003340	EXOG (ENSACCG00020003324)	ACVR2B (ENSACCG00020003300)	XYLB (ENSACCG00020003246)	C9orf152 (ENSACCG00020003218)	NUB1 (ENSACCG00020003205) #12	WDR86 (ENSACCG00020003190) #14	CRYGN (ENSACCG00020003178) #15	RHEB (ENSACCG00020003157) #16	PRKAG2 (ENSACCG00020003120) #17	GALNT11 (ENSACCG00020003082) #19	KMT2C (ENSACCG00020003024) #20	XRCC2 (ENSACCG00020002950) #21	ENSACCG00020002936 #22	DPP6 (ENSACCG00020002920) #23	PAXIP1 (ENSACCG00020002898)	HTR5A (ENSACCG00020002885)	INSIG1 (ENSACCG00020002867)	EN2 (ENSACCG00020002848)	RBM33 (ENSACCG00020002837)	SHH (ENSACCG00020002826)	RNF32 (ENSACCG00020002800)	LMBR1 (ENSACCG00020002762)	NOM1 (ENSACCG00020002747)	MNX1 (ENSACCG00020002727)	UBE3C (ENSACCG00020002711)	DNAJB6 (ENSACCG00020002689)	ENSACCG00020002643	NCAPG2 (ENSACCG00020002594)
Kakapo	MODERN SPECIES		ENSSHBG00005004282	ENSSHBG00005004301	ENSSHBG00005004329	ENSSHBG00005000015	EXOG (ENSSHBG00005000032)	ACVR2B (ENSSHBG00005009789)	XYLB (ENSSHBG00005009878)	ENSSHBG00005009941	NUB1 (ENSSHBG00005009957) #12	WDR86 (ENSSHBG00005010010) #14	CRYGN (ENSSHBG00005010043) #15	RHEB (ENSSHBG00005010079) #16	PRKAG2 (ENSSHBG00005010112) #17	GALNT11 (ENSSHBG00005010161) #19	ENSSHBG00005010208	ENSSHBG00005010270 #22	XRCC2 (ENSSHBG00005010299) #21	DPP6 (ENSSHBG00005010332) #23	PAXIP1 (ENSSHBG00005010488)	HTR5A (ENSSHBG00005010554)	INSIG1 (ENSSHBG00005010572)	ENSSHBG00005010596	RBM33 (ENSSHBG00005010647)	SHH (ENSSHBG00005010729)	LMBR1 (ENSSHBG00005010755)	NOM1 (ENSSHBG00005010790)	MNX1 (ENSSHBG00005010822)	UBE3C (ENSSHBG00005010899)	DNAJB6 (ENSSHBG00005011111)	ENSSHBG00005011155	NCAPG2 (ENSSHBG00005011216)
Passeriformes	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000154095.b.a
Passeriformes_d	ANCESTRAL SPECIES		ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000154095.b.a
Passeriformes_g	ANCESTRAL SPECIES	6	ENSGT01030000235508	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000154095.b.a	ENSGT00940000165471	ENSGT00490000043432
Passeroidea	ANCESTRAL SPECIES	6	ENSGT01100000266186	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00960000190124	ENSGT00940000165471	ENSGT00490000043432
Common canary	DUPLICATION
Common canary	MODERN SPECIES	5	ENSSCAG00000006711	ENSSCAG00000006761	EXOG (ENSSCAG00000006776)	ACVR2B (ENSSCAG00000006784)	ENSSCAG00000006791	XYLB (ENSSCAG00000006849)	ENSSCAG00000007147	NUB1 (ENSSCAG00000007151) #12	WDR86 (ENSSCAG00000007159) #14	CRYGN (ENSSCAG00000007163) #15	RHEB (ENSSCAG00000007170) #16	PRKAG2 (ENSSCAG00000007207) #17	GALNT11 (ENSSCAG00000007229) #19	KMT2C (ENSSCAG00000007257) #20	XRCC2 (ENSSCAG00000007352) #21	ENSSCAG00000007355 #22	ENSSCAG00000007360 #22	DPP6 (ENSSCAG00000007386) #23	PAXIP1 (ENSSCAG00000007400)	HTR5A (ENSSCAG00000007408)	INSIG1 (ENSSCAG00000007425)	EN2 (ENSSCAG00000007429)	RBM33 (ENSSCAG00000007441)	SHH (ENSSCAG00000007451)	LMBR1 (ENSSCAG00000007474)	NOM1 (ENSSCAG00000007528)	ENSSCAG00000007531	UBE3C (ENSSCAG00000007564)	DNAJB6 (ENSSCAG00000007709)	ENSSCAG00000007722	ENSSCAG00000007751
Common canary	MODERN SPECIES	5	ENSSCAG00000006761	EXOG (ENSSCAG00000006776)	ACVR2B (ENSSCAG00000006784)	ENSSCAG00000006791	XYLB (ENSSCAG00000006849)	ENSSCAG00000007147	NUB1 (ENSSCAG00000007151) #12	WDR86 (ENSSCAG00000007159) #14	CRYGN (ENSSCAG00000007163) #15	RHEB (ENSSCAG00000007170) #16	PRKAG2 (ENSSCAG00000007207) #17	GALNT11 (ENSSCAG00000007229) #19	KMT2C (ENSSCAG00000007257) #20	XRCC2 (ENSSCAG00000007352) #21	ENSSCAG00000007355 #22	ENSSCAG00000007360 #22	DPP6 (ENSSCAG00000007386) #23	PAXIP1 (ENSSCAG00000007400)	HTR5A (ENSSCAG00000007408)	INSIG1 (ENSSCAG00000007425)	EN2 (ENSSCAG00000007429)	RBM33 (ENSSCAG00000007441)	SHH (ENSSCAG00000007451)	LMBR1 (ENSSCAG00000007474)	NOM1 (ENSSCAG00000007528)	ENSSCAG00000007531	UBE3C (ENSSCAG00000007564)	DNAJB6 (ENSSCAG00000007709)	ENSSCAG00000007722	ENSSCAG00000007751	NCAPG2 (ENSSCAG00000007761)
Zebra finch	MODERN SPECIES	12	ENSTGUG00000026697	ENSTGUG00000021008	ENSTGUG00000000476	EXOG (ENSTGUG00000000538)	ACVR2B (ENSTGUG00000000545)	XYLB (ENSTGUG00000000555)	ENSTGUG00000000563	NUB1 (ENSTGUG00000000564) #12	WDR86 (ENSTGUG00000000583) #14	CRYGN (ENSTGUG00000022845) #15	RHEB (ENSTGUG00000000585) #16	PRKAG2 (ENSTGUG00000000594) #17	GALNT11 (ENSTGUG00000000608) #19	KMT2C (ENSTGUG00000000616) #20	XRCC2 (ENSTGUG00000024159) #21	ENSTGUG00000000635 #22	DPP6 (ENSTGUG00000000647) #23	PAXIP1 (ENSTGUG00000000682)	HTR5A (ENSTGUG00000000689)	INSIG1 (ENSTGUG00000029602)	EN2 (ENSTGUG00000020009)	RBM33 (ENSTGUG00000000696)	SHH (ENSTGUG00000000697)	LMBR1 (ENSTGUG00000000698)	NOM1 (ENSTGUG00000000702)	MNX1 (ENSTGUG00000000706)	UBE3C (ENSTGUG00000000708)	DNAJB6 (ENSTGUG00000029021)	PTPRN2 (ENSTGUG00000000727)	ENSTGUG00000024626	NCAPG2 (ENSTGUG00000000738)
Medium ground finch	MODERN SPECIES	70	ENSGFOG00000004382	ENSGFOG00000004410	ENSGFOG00000004604	EXOG (ENSGFOG00000004757)	ACVR2B (ENSGFOG00000004774)	XYLB (ENSGFOG00000004870)	ENSGFOG00000006109	NUB1 (ENSGFOG00000006117) #12	WDR86 (ENSGFOG00000006125) #14	CRYGN (ENSGFOG00000006131) #15	RHEB (ENSGFOG00000006134) #16	PRKAG2 (ENSGFOG00000006159) #17	GALNT11 (ENSGFOG00000006229) #19	KMT2C (ENSGFOG00000006254) #20	XRCC2 (ENSGFOG00000006279) #21	ENSGFOG00000006286 #22
Flycatcher	MODERN SPECIES	11	ENSFALG00000006706	ENSFALG00000006746	EXOG (ENSFALG00000006795)	ACVR2B (ENSFALG00000006801)	XYLB (ENSFALG00000006808)	ENSFALG00000022927	NUB1 (ENSFALG00000006814) #12	WDR86 (ENSFALG00000006815) #14	CRYGN (ENSFALG00000006817) #15	RHEB (ENSFALG00000026181) #16	PRKAG2 (ENSFALG00000024282) #17	ENSFALG00000023386 ##17	GALNT11 (ENSFALG00000006836) #19	KMT2C (ENSFALG00000006839) #20	XRCC2 (ENSFALG00000006845) #21	ENSFALG00000006847 #22	ENSFALG00000024142	ENSFALG00000024108	DPP6 (ENSFALG00000006860) #23	PAXIP1 (ENSFALG00000006873)	ENSFALG00000006884	HTR5A (ENSFALG00000024143)	INSIG1 (ENSFALG00000027048)	ENSFALG00000027116	RBM33 (ENSFALG00000006892)	ENSFALG00000000205	LMBR1 (ENSFALG00000006897)	NOM1 (ENSFALG00000006904)	MNX1 (ENSFALG00000006908)	UBE3C (ENSFALG00000006911)	DNAJB6 (ENSFALG00000006920)
Great tit	MODERN SPECIES	11	ENSPMJG00000004631	ENSPMJG00000004712	EXOG (ENSPMJG00000004805)	ACVR2B (ENSPMJG00000004815)	XYLB (ENSPMJG00000004882)	ENSPMJG00000004910	NUB1 (ENSPMJG00000004912) #12	WDR86 (ENSPMJG00000004913) #14	CRYGN (ENSPMJG00000004914) #15	RHEB (ENSPMJG00000004916) #16	PRKAG2 (ENSPMJG00000004960) #17	ENSPMJG00000004974	GALNT11 (ENSPMJG00000004978) #19	KMT2C (ENSPMJG00000005002) #20	XRCC2 (ENSPMJG00000005067) #21	ENSPMJG00000005072 #22	DPP6 (ENSPMJG00000005103) #23	PAXIP1 (ENSPMJG00000005135)	HTR5A (ENSPMJG00000005146)	INSIG1 (ENSPMJG00000005152)	EN2 (ENSPMJG00000005161)	RBM33 (ENSPMJG00000005169)	SHH (ENSPMJG00000005296)	LMBR1 (ENSPMJG00000005305)	NOM1 (ENSPMJG00000005309)	MNX1 (ENSPMJG00000005310)	UBE3C (ENSPMJG00000005317)	DNAJB6 (ENSPMJG00000005329)	ENSPMJG00000005335	PTPRN2 (ENSPMJG00000005382)	NCAPG2 (ENSPMJG00000005423)
Galloanserae	ANCESTRAL SPECIES		ENSGT01030000235508	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000173575	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000154095.b.a
Anatidae	ANCESTRAL SPECIES	1	ENSGT01030000235508	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000173575	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000165471	ENSGT00490000043432
Duck	MODERN SPECIES	10	ENSAPLG00000020958	ENSAPLG00000009692	EXOG (ENSAPLG00000012196)	ACVR2B (ENSAPLG00000012223)	XYLB (ENSAPLG00000012716)	ENSAPLG00000013188	NUB1 (ENSAPLG00000013255) #12	WDR86 (ENSAPLG00000013707) #14	CRYGN (ENSAPLG00000013788) #15	RHEB (ENSAPLG00000022733) #16	PRKAG2 (ENSAPLG00000004562) #17	GALNT11 (ENSAPLG00000003570) #19	ENSAPLG00000003614 #20	ENSAPLG00000018683	XRCC2 (ENSAPLG00000004781) #21	ENSAPLG00000004785 #22	DPP6 (ENSAPLG00000008020) #23	PAXIP1 (ENSAPLG00000007829)	HTR5A (ENSAPLG00000023307)	INSIG1 (ENSAPLG00000007430)	ENSAPLG00000021720	RBM33 (ENSAPLG00000007387)	SHH (ENSAPLG00000007226)	RNF32 (ENSAPLG00000007181)	LMBR1 (ENSAPLG00000006761)	NOM1 (ENSAPLG00000006585)	MNX1 (ENSAPLG00000027559)	UBE3C (ENSAPLG00000005692)	DNAJB6 (ENSAPLG00000005259)	ENSAPLG00000013939	ENSAPLG00000014002
Pink-footed goose	MODERN SPECIES	35	SCN10A (ENSABRG00000020462)	ENSABRG00000020460	ENSABRG00000020217	EXOG (ENSABRG00000020169)	ACVR2B (ENSABRG00000020159)	XYLB (ENSABRG00000020138)	C9orf152 (ENSABRG00000020134)	NUB1 (ENSABRG00000020126) #12	WDR86 (ENSABRG00000020123) #14	CRYGN (ENSABRG00000020111) #15	RHEB (ENSABRG00000020029) #16	PRKAG2 (ENSABRG00000020012) #17	GALNT11 (ENSABRG00000019996) #19	KMT2C (ENSABRG00000019981) #20	XRCC2 (ENSABRG00000019975) #21	ENSABRG00000019974 #22	DPP6 (ENSABRG00000019953) #23	PAXIP1 (ENSABRG00000019944)	HTR5A (ENSABRG00000019943)	INSIG1 (ENSABRG00000019941)
Phasianidae	ANCESTRAL SPECIES	1	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000173575	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000154095.b.a
Phasianidae_b	ANCESTRAL SPECIES	1	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00490000043432	ENSGT00940000156086
Chicken	MODERN SPECIES	11	WDR48 (ENSGALG00010026715)	SCN11A (ENSGALG00010026737)	ENSGALG00010026794	ENSGALG00010027094	SCN5A (ENSGALG00010027095)	EXOG (ENSGALG00010027098)	ACVR2B (ENSGALG00010027103)	XYLB (ENSGALG00010027112)	C9ORF152 (ENSGALG00010027115)	NUB1 (ENSGALG00010027119) #12	WDR86 (ENSGALG00010027123) #14	CRYGN (ENSGALG00010027125) #15	PRKAG2 (ENSGALG00010027135) #17	GALNT11 (ENSGALG00010027143) #19	KMT2C (ENSGALG00010027147) #20	ENSGALG00010027153 #22	XRCC2 (ENSGALG00010027158) #21	DPP6 (ENSGALG00010025216) #23	PAXIP1 (ENSGALG00010025243)	HTR5A (ENSGALG00010024832)	INSIG1 (ENSGALG00010024834)	EN2 (ENSGALG00010024838)	RBM33 (ENSGALG00010024826)	SHH (ENSGALG00010025259)	RNF32 (ENSGALG00010024988)	LMBR1 (ENSGALG00010025097)	NOM1 (ENSGALG00010024927)	MNX1 (ENSGALG00010024924)	UBE3C (ENSGALG00010024931)	DNAJB6 (ENSGALG00010024942)	NCAPG2 (ENSGALG00010024953)
Turkey	MODERN SPECIES	26	HTR5A (ENSMGAG00000019111)	INSIG1 (ENSMGAG00000004902)	ENSMGAG00000019829	EXOG (ENSMGAG00000004394)	ENSMGAG00000004400	XYLB (ENSMGAG00000004491)	ENSMGAG00000019963	NUB1 (ENSMGAG00000004526) #12	WDR86 (ENSMGAG00000004543) #14	CRYGN (ENSMGAG00000004552) #15	RHEB (ENSMGAG00000004567) #16	PRKAG2 (ENSMGAG00000004579) #17	GALNT11 (ENSMGAG00000004676) #19	KMT2C (ENSMGAG00000004716) #20	XRCC2 (ENSMGAG00000004800) #21	ENSMGAG00000004807 #22	ENSMGAG00000022715	ENSMGAG00000004903	SHH (ENSMGAG00000004948)	ENSMGAG00000020643	RNF32 (ENSMGAG00000004972)	LMBR1 (ENSMGAG00000004982)	NOM1 (ENSMGAG00000005051)	UBE3C (ENSMGAG00000005070)	DNAJB6 (ENSMGAG00000005121)	ENSMGAG00000022286	NCAPG2 (ENSMGAG00000005155)	ESYT2 (ENSMGAG00000005205)	DYNC2I1 (ENSMGAG00000005253)	VIPR2 (ENSMGAG00000005280)	ZMYND11 (ENSMGAG00000005311)
Japanese quail	MODERN SPECIES	11	ENSCJPG00005010971	ENSCJPG00005010973	ENSCJPG00005010974	EXOG (ENSCJPG00005010980)	ACVR2B (ENSCJPG00005010982)	XYLB (ENSCJPG00005010993)	C9orf152 (ENSCJPG00005000048)	NUB1 (ENSCJPG00005000076) #12	WDR86 (ENSCJPG00005000087) #14	CRYGN (ENSCJPG00005000094) #15	RHEB (ENSCJPG00005000097) #16	PRKAG2 (ENSCJPG00005000141) #17	GALNT11 (ENSCJPG00005001149) #19	KMT2C (ENSCJPG00005001186) #20	XRCC2 (ENSCJPG00005001304) #21	ENSCJPG00005001362 #22	ENSCJPG00005003107	DPP6 (ENSCJPG00005003129) #23	PAXIP1 (ENSCJPG00005003146)	HTR5A (ENSCJPG00005003149)	INSIG1 (ENSCJPG00005003151)	EN2 (ENSCJPG00005003153)	ENSCJPG00005003155	RBM33 (ENSCJPG00005003160)	SHH (ENSCJPG00005003165)	RNF32 (ENSCJPG00005003177)	LMBR1 (ENSCJPG00005003181)	NOM1 (ENSCJPG00005003185)	MNX1 (ENSCJPG00005003190)	UBE3C (ENSCJPG00005003193)	DNAJB6 (ENSCJPG00005003199)
African ostrich	MODERN SPECIES	193	ENSSCUG00000001308	ENSSCUG00000001315	ENSSCUG00000001322	ENSSCUG00000001338	EXOG (ENSSCUG00000001359)	ACVR2B (ENSSCUG00000001362)	XYLB (ENSSCUG00000001372)	C9orf152 (ENSSCUG00000001379)	NUB1 (ENSSCUG00000001380) #12	CRYGN (ENSSCUG00000001383) #15	RHEB (ENSSCUG00000001388) #16	PRKAG2 (ENSSCUG00000001393) #17	GALNT11 (ENSSCUG00000001411) #19	KMT2C (ENSSCUG00000001427) #20	XRCC2 (ENSSCUG00000001436) #21	ENSSCUG00000001462 #22	ENSSCUG00000001503	DPP6 (ENSSCUG00000001505) #23	PAXIP1 (ENSSCUG00000001510)	HTR5A (ENSSCUG00000001515)	INSIG1 (ENSSCUG00000001517)
Australian saltwater crocodile	MODERN SPECIES		GORASP1 (ENSCPRG00005003956)	WDR48 (ENSCPRG00005003964)	SCN10A (ENSCPRG00005004022)	ENSCPRG00005004490	EXOG (ENSCPRG00005004567)	ACVR2B (ENSCPRG00005004570)	XYLB (ENSCPRG00005004595)	ENSCPRG00005004619	NUB1 (ENSCPRG00005004657) #12	WDR86 (ENSCPRG00005004680) #14	CRYGN (ENSCPRG00005004686) #15	PRKAG2 (ENSCPRG00005004752) #17	GALNT11 (ENSCPRG00005004779) #19	KMT2C (ENSCPRG00005004866) #20	XRCC2 (ENSCPRG00005004960) #21	ENSCPRG00005004962 #22	DPP6 (ENSCPRG00005005025) #23	PAXIP1 (ENSCPRG00005005147)	HTR5A (ENSCPRG00005005156)	INSIG1 (ENSCPRG00005005206)	EN2 (ENSCPRG00005005248)	ENSCPRG00005005252	RBM33 (ENSCPRG00005005304)	SHH (ENSCPRG00005005330)	RNF32 (ENSCPRG00005005370)	LMBR1 (ENSCPRG00005005410)	ENSCPRG00005005429	NOM1 (ENSCPRG00005005432)	MNX1 (ENSCPRG00005005437)	UBE3C (ENSCPRG00005005454)	ENSCPRG00005005480
Cryptodira	ANCESTRAL SPECIES	4	ENSGT00940000154992.b.a.a.a.b	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Testudinoidea	ANCESTRAL SPECIES	8	ENSGT00940000154992.b.a.a.a.b	ENSGT00940000154992.b.a.b.e	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Emydidae	ANCESTRAL SPECIES	35	ENSGT00940000154992.b.a.a.a.b	ENSGT00940000154992.b.a.b.e	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT00500000045852	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Three-toed box turtle	DUPLICATION
Three-toed box turtle	MODERN SPECIES	48	ENSTMTG00000014759	EXOG (ENSTMTG00000014826)	ACVR2B (ENSTMTG00000014931)	XYLB (ENSTMTG00000014948)	ENSTMTG00000014969	NUB1 (ENSTMTG00000014982) #12	WDR86 (ENSTMTG00000015059) #14	CRYGN (ENSTMTG00000015082) #15	RHEB (ENSTMTG00000015095) #16	PRKAG2 (ENSTMTG00000015103) #17	ENSTMTG00000015122 ##17	GALNT11 (ENSTMTG00000015170) #19	KMT2C (ENSTMTG00000015214) #20	XRCC2 (ENSTMTG00000015617) #21	ENSTMTG00000015626 #22	ENSTMTG00000015647 #22	DPP6 (ENSTMTG00000015678) #23	PAXIP1 (ENSTMTG00000015797)	HTR5A (ENSTMTG00000015834)	INSIG1 (ENSTMTG00000015836)	EN2 (ENSTMTG00000015847)	ENSTMTG00000015855	RBM33 (ENSTMTG00000015869)	SHH (ENSTMTG00000000058)	RNF32 (ENSTMTG00000000121)	LMBR1 (ENSTMTG00000000144)	NOM1 (ENSTMTG00000000176)	MNX1 (ENSTMTG00000000205)	UBE3C (ENSTMTG00000000304)	DNAJB6 (ENSTMTG00000000351)	NCAPG2 (ENSTMTG00000000398)
Three-toed box turtle	MODERN SPECIES	48	SCN10A (ENSTMTG00000011964)	ENSTMTG00000014759	EXOG (ENSTMTG00000014826)	ACVR2B (ENSTMTG00000014931)	XYLB (ENSTMTG00000014948)	ENSTMTG00000014969	NUB1 (ENSTMTG00000014982) #12	WDR86 (ENSTMTG00000015059) #14	CRYGN (ENSTMTG00000015082) #15	RHEB (ENSTMTG00000015095) #16	PRKAG2 (ENSTMTG00000015103) #17	ENSTMTG00000015122 ##17	GALNT11 (ENSTMTG00000015170) #19	KMT2C (ENSTMTG00000015214) #20	XRCC2 (ENSTMTG00000015617) #21	ENSTMTG00000015626 #22	ENSTMTG00000015647 #22	DPP6 (ENSTMTG00000015678) #23	PAXIP1 (ENSTMTG00000015797)	HTR5A (ENSTMTG00000015834)	INSIG1 (ENSTMTG00000015836)	EN2 (ENSTMTG00000015847)	ENSTMTG00000015855	RBM33 (ENSTMTG00000015869)	SHH (ENSTMTG00000000058)	RNF32 (ENSTMTG00000000121)	LMBR1 (ENSTMTG00000000144)	NOM1 (ENSTMTG00000000176)	MNX1 (ENSTMTG00000000205)	UBE3C (ENSTMTG00000000304)	DNAJB6 (ENSTMTG00000000351)
painted turtle	MODERN SPECIES	2396	ENSCPBG00000018323	ENSCPBG00000018304	EXOG (ENSCPBG00000018302)	ACVR2B (ENSCPBG00000018300)	ENSCPBG00000018298	XYLB (ENSCPBG00000018294)	C9orf152 (ENSCPBG00000018293)	NUB1 (ENSCPBG00000018292) #12	WDR86 (ENSCPBG00000018290) #14	CRYGN (ENSCPBG00000018288) #15	RHEB (ENSCPBG00000018286) #16	ENSCPBG00000018281 ##17	GALNT11 (ENSCPBG00000018278) #19	KMT2C (ENSCPBG00000018257) #20	XRCC2 (ENSCPBG00000018246) #21	ENSCPBG00000018243 #22	DPP6 (ENSCPBG00000018233) #23	PAXIP1 (ENSCPBG00000018227)	ENSCPBG00000018226	HTR5A (ENSCPBG00000018225)	INSIG1 (ENSCPBG00000018224)	EN2 (ENSCPBG00000018223)	ENSCPBG00000018222	RBM33 (ENSCPBG00000018221)	SHH (ENSCPBG00000018220)	RNF32 (ENSCPBG00000018218)	LMBR1 (ENSCPBG00000018217)	NOM1 (ENSCPBG00000018215)	MNX1 (ENSCPBG00000018214)	UBE3C (ENSCPBG00000018178)	DNAJB6 (ENSCPBG00000018170)
Testudinidae	ANCESTRAL SPECIES	1	ENSGT00940000154992.b.a.a.a.a	ENSGT00940000154992.b.a.a.a.b	ENSGT00940000154992.b.a.b.e	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000154095.b.a
Abingdon island giant tortoise	MODERN SPECIES	2605													GALNT11 (ENSCABG00000006232) #19	KMT2C (ENSCABG00000006247) #20	XRCC2 (ENSCABG00000006306) #21	ENSCABG00000006307 #22
Goode s thornscrub tortoise	MODERN SPECIES	11	ENSGEVG00005018227	ENSGEVG00005019853	ENSGEVG00005020006	EXOG (ENSGEVG00005008833)	ACVR2B (ENSGEVG00005009013)	XYLB (ENSGEVG00005009229)	ENSGEVG00005009443	NUB1 (ENSGEVG00005009479) #12	WDR86 (ENSGEVG00005009546) #14	CRYGN (ENSGEVG00005009618) #15	RHEB (ENSGEVG00005009682) #16	PRKAG2 (ENSGEVG00005009851) #17	GALNT11 (ENSGEVG00005010015) #19	KMT2C (ENSGEVG00005010122) #20	XRCC2 (ENSGEVG00005010487) #21	ENSGEVG00005010511 #22	DPP6 (ENSGEVG00005010654) #23	PAXIP1 (ENSGEVG00005011452)	HTR5A (ENSGEVG00005011509)	INSIG1 (ENSGEVG00005011537)	EN2 (ENSGEVG00005011558)	ENSGEVG00005011642	RBM33 (ENSGEVG00005011760)	SHH (ENSGEVG00005011894)	RNF32 (ENSGEVG00005011933)	LMBR1 (ENSGEVG00005012025)	NOM1 (ENSGEVG00005012065)	MNX1 (ENSGEVG00005012108)	UBE3C (ENSGEVG00005012216)	DNAJB6 (ENSGEVG00005012269)	ENSGEVG00005012313
Chinese turtle	MODERN SPECIES	1540												GALNT11 (ENSPSIG00000017334) #19	ENSPSIG00000017718	KMT2C (ENSPSIG00000017727) #20	XRCC2 (ENSPSIG00000007029) #21	ENSPSIG00000007043 #22	DPP6 (ENSPSIG00000007425) #23	PAXIP1 (ENSPSIG00000012656)	HTR5A (ENSPSIG00000014680)	INSIG1 (ENSPSIG00000014702)	ENSPSIG00000001528	EN2 (ENSPSIG00000014871)	ENSPSIG00000014910	RBM33 (ENSPSIG00000015020)	SHH (ENSPSIG00000016979)	ENSPSIG00000001536	RNF32 (ENSPSIG00000017150)	LMBR1 (ENSPSIG00000017369)	NOM1 (ENSPSIG00000017848)	MNX1 (ENSPSIG00000018012)	UBE3C (ENSPSIG00000018068)
Lepidosauria	ANCESTRAL SPECIES	5	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
tuatara	DUPLICATION
tuatara	DUPLICATION
tuatara	MODERN SPECIES	232	NUB1 (ENSSPUG00000018330) #12	WDR86 (ENSSPUG00000018343) #14	CRYGN (ENSSPUG00000018352) #15	RHEB (ENSSPUG00000018361) #16	ENSSPUG00000018367 #17	ENSSPUG00000018369 #17	ENSSPUG00000018373 #17	ENSSPUG00000018376 ##17	GALNT11 (ENSSPUG00000018379) #19	ENSSPUG00000018382 #20	ENSSPUG00000018386 #20	ENSSPUG00000018391 #20	ENSSPUG00000018397 #20	ENSSPUG00000018401	XRCC2 (ENSSPUG00000018420) #21	ENSSPUG00000018425 #22	ENSSPUG00000018430 #22	ENSSPUG00000018431 #22
tuatara	MODERN SPECIES	232	CRYGN (ENSSPUG00000018352) #15	RHEB (ENSSPUG00000018361) #16	ENSSPUG00000018367 #17	ENSSPUG00000018369 #17	ENSSPUG00000018373 #17	ENSSPUG00000018376 ##17	GALNT11 (ENSSPUG00000018379) #19	ENSSPUG00000018382 #20	ENSSPUG00000018386 #20	ENSSPUG00000018391 #20	ENSSPUG00000018397 #20	ENSSPUG00000018401	XRCC2 (ENSSPUG00000018420) #21	ENSSPUG00000018425 #22	ENSSPUG00000018430 #22	ENSSPUG00000018431 #22
tuatara	MODERN SPECIES	232	WDR86 (ENSSPUG00000018343) #14	CRYGN (ENSSPUG00000018352) #15	RHEB (ENSSPUG00000018361) #16	ENSSPUG00000018367 #17	ENSSPUG00000018369 #17	ENSSPUG00000018373 #17	ENSSPUG00000018376 ##17	GALNT11 (ENSSPUG00000018379) #19	ENSSPUG00000018382 #20	ENSSPUG00000018386 #20	ENSSPUG00000018391 #20	ENSSPUG00000018397 #20	ENSSPUG00000018401	XRCC2 (ENSSPUG00000018420) #21	ENSSPUG00000018425 #22	ENSSPUG00000018430 #22	ENSSPUG00000018431 #22
Episquamata	ANCESTRAL SPECIES	5	ENSGT01030000235508.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891.g	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Laterata	ANCESTRAL SPECIES	10	ENSGT00940000154992.b.a.a.a	ENSGT01030000235508.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891.g	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205	ENSGT00940000154095.b.a
Argentine black and white tegu	MODERN SPECIES	5	SCN10A (ENSSMRG00000014452)	ENSSMRG00000014441	ENSSMRG00000014437	EXOG (ENSSMRG00000014435)	ACVR2B (ENSSMRG00000014433)	XYLB (ENSSMRG00000014427)	ENSSMRG00000014426	NUB1 (ENSSMRG00000014425) #12	WDR86 (ENSSMRG00000014424) #14	CRYGN (ENSSMRG00000014423) #15	RHEB (ENSSMRG00000014422) #16	PRKAG2 (ENSSMRG00000014416) #17	GALNT11 (ENSSMRG00000014411) #19	KMT2C (ENSSMRG00000014394) #20	XRCC2 (ENSSMRG00000014391) #21	ENSSMRG00000014390 #22	DPP6 (ENSSMRG00000014379) #23	PAXIP1 (ENSSMRG00000014371)	HTR5A (ENSSMRG00000014370)	INSIG1 (ENSSMRG00000014369)	EN2 (ENSSMRG00000014368)	ENSSMRG00000014367	RBM33 (ENSSMRG00000014365)	SHH (ENSSMRG00000014362)	RNF32 (ENSSMRG00000014360)	LMBR1 (ENSSMRG00000014357)	NOM1 (ENSSMRG00000014354)	MNX1 (ENSSMRG00000014353)	UBE3C (ENSSMRG00000014348)	DNAJB6 (ENSSMRG00000014345)	PTPRN2 (ENSSMRG00000014333)
Common wall lizard	MODERN SPECIES	3	ENSPMRG00000011611	ENSPMRG00000011882	ENSPMRG00000011884	EXOG (ENSPMRG00000011889)	ACVR2B (ENSPMRG00000011898)	XYLB (ENSPMRG00000011904)	ENSPMRG00000011908	NUB1 (ENSPMRG00000011911) #12	WDR86 (ENSPMRG00000011920) #14	CRYGN (ENSPMRG00000011930) #15	ENSPMRG00000011935 #16	ENSPMRG00000011976 #17	GALNT11 (ENSPMRG00000012211) #19	KMT2C (ENSPMRG00000012247) #20	XRCC2 (ENSPMRG00000012492) #21	ENSPMRG00000012523 #22	ENSPMRG00000012595	ENSPMRG00000012596	DPP6 (ENSPMRG00000012603) #23	PAXIP1 (ENSPMRG00000012624)	HTR5A (ENSPMRG00000012641)	ENSPMRG00000012644	INSIG1 (ENSPMRG00000012647)	EN2 (ENSPMRG00000012653)	ENSPMRG00000012663	ENSPMRG00000012678	SHH (ENSPMRG00000012685)	RNF32 (ENSPMRG00000012691)	LMBR1 (ENSPMRG00000012705)	NOM1 (ENSPMRG00000012707)	MNX1 (ENSPMRG00000012713)
Toxicofera	ANCESTRAL SPECIES	4	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891.g	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321	ENSGT00940000154205
Lizard	MODERN SPECIES	5	C1orf35 (ENSACAG00000006899)	ARF1 (ENSACAG00000006923)	WNT3A (ENSACAG00000040979)	ENSACAG00000012183	ENSACAG00000034573	NUB1 (ENSACAG00000012076) #12	ENSACAG00000036256	WDR86 (ENSACAG00000002245) #14	CRYGN (ENSACAG00000002251) #15	RHEB (ENSACAG00000038398) #16	PRKAG2 (ENSACAG00000002337) #17	ENSACAG00000037326 ##17	GALNT11 (ENSACAG00000014168) #19	KMT2C (ENSACAG00000014195) #20	XRCC2 (ENSACAG00000035126) #21	ENSACAG00000010629 #22	ENSACAG00000038762	DPP6 (ENSACAG00000010707) #23	PAXIP1 (ENSACAG00000010905)	HTR5A (ENSACAG00000010972)	INSIG1 (ENSACAG00000010997)	EN2 (ENSACAG00000011018)	ENSACAG00000011000	RBM33 (ENSACAG00000011035)	SHH (ENSACAG00000037059)	RNF32 (ENSACAG00000011088)	LMBR1 (ENSACAG00000011102)	NOM1 (ENSACAG00000011192)	MNX1 (ENSACAG00000045498)	UBE3C (ENSACAG00000011224)	DNAJB6 (ENSACAG00000011443)
Elapidae	ANCESTRAL SPECIES	24	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b.g	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00950000183019.e ##17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00900000143483	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891.g.b	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b.g.a	ENSGT00390000007809.b.g.b	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Indian cobra	MODERN SPECIES	337	GORASP1 (ENSNNAG00000012571)	ENSNNAG00000012612	SCN10A (ENSNNAG00000012641)	EXOG (ENSNNAG00000012754)	ACVR2B (ENSNNAG00000012901)	XYLB (ENSNNAG00000013018)	ENSNNAG00000014486	NUB1 (ENSNNAG00000014500) #12	WDR86 (ENSNNAG00000014529) #14	RHEB (ENSNNAG00000014554) #16	PRKAG2 (ENSNNAG00000014572) #17	ENSNNAG00000014628 ##17	GALNT11 (ENSNNAG00000014646) #19	KMT2C (ENSNNAG00000014727) #20	XRCC2 (ENSNNAG00000015566) #21	ENSNNAG00000015577 #22	ENSNNAG00000015614	DPP6 (ENSNNAG00000015630) #23	ENSNNAG00000015690	HTR5A (ENSNNAG00000015708)	INSIG1 (ENSNNAG00000015713)	EN2 (ENSNNAG00000015728)	ENSNNAG00000003200	ENSNNAG00000003237	SHH (ENSNNAG00000003305)	ENSNNAG00000003315	RNF32 (ENSNNAG00000003325)	LMBR1 (ENSNNAG00000003348)	NOM1 (ENSNNAG00000003389)	MNX1 (ENSNNAG00000003399)	UBE3C (ENSNNAG00000003433)
Elapidae_a	ANCESTRAL SPECIES	92	ENSGT00940000154992.b.a.a.b	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b.g	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00390000005322	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a
Acanthophiinae	ANCESTRAL SPECIES	86	ENSGT00940000154992.b.a.a.b	ENSGT01030000235508.b	ENSGT00940000154992.b.a.a.a	ENSGT00940000154992.b.a.b.g	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00990000211963	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159945 #16	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a
Eastern brown snake	MODERN SPECIES	128								ENSPTXG00000015111	NUB1 (ENSPTXG00000015108) #12	WDR86 (ENSPTXG00000015105) #14	RHEB (ENSPTXG00000015101) #16	PRKAG2 (ENSPTXG00000015097) #17	GALNT11 (ENSPTXG00000015096) #19	KMT2C (ENSPTXG00000015093) #20	XRCC2 (ENSPTXG00000015083) #21	ENSPTXG00000015082 #22	DPP6 (ENSPTXG00000015049) #23	PAXIP1 (ENSPTXG00000014930)	HTR5A (ENSPTXG00000014917)
Mainland tiger snake	MODERN SPECIES	109	SCN10A (ENSNSUG00000012201)	ENSNSUG00000012202	ENSNSUG00000012203	EXOG (ENSNSUG00000012204)	ACVR2B (ENSNSUG00000012226)	XYLB (ENSNSUG00000012227)	ENSNSUG00000012228	ENSNSUG00000012229	NUB1 (ENSNSUG00000012230) #12	WDR86 (ENSNSUG00000012231) #14	RHEB (ENSNSUG00000012232) #16	PRKAG2 (ENSNSUG00000012233) #17	GALNT11 (ENSNSUG00000012680) #19	KMT2C (ENSNSUG00000012681) #20	XRCC2 (ENSNSUG00000012682) #21	ENSNSUG00000012683 #22
Blue-lipped sea krait	MODERN SPECIES	9792																ENSLLTG00000010160 #22
Coelacanth	MODERN SPECIES	2333																actr3b (ENSLACG00000002610) #22
Actinopterygii	ANCESTRAL SPECIES	24	ENSGT00920000149157	ENSGT00940000154992.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000165403	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Reedfish	MODERN SPECIES	14	MINDY4 (ENSECRG00000009334)	CRHR2 (ENSECRG00000009276)	myl13 (ENSECRG00000009254)	pth1r (ENSECRG00000009151)	tmie (ENSECRG00000009115)	ENSECRG00000009095 #12	ENSECRG00000009076	xylb (ENSECRG00000009056)	acvr2ba (ENSECRG00000008957)	EXOG (ENSECRG00000008909)	ENSECRG00000008890	scn12aa (ENSECRG00000005698)	TTC21A (ENSECRG00000005137)	ENSECRG00000005069	wdr48b (ENSECRG00000005005)	actr3b (ENSECRG00000004893) #22	dpp6b (ENSECRG00000004832) #23	paxip1 (ENSECRG00000004781)	htr5ab (ENSECRG00000004764)	insig1 (ENSECRG00000004748)	en2b (ENSECRG00000005418)	cnpy1 (ENSECRG00000005403)	RBM33 (ENSECRG00000005377)	shha (ENSECRG00000005354)	ENSECRG00000005348	rnf32 (ENSECRG00000005324)	ube3c (ENSECRG00000005293)	DNAJB6 (ENSECRG00000005277)	ncapg2 (ENSECRG00000005241)	ESYT2 (ENSECRG00000005199)	ENSECRG00000005179
Neopterygii	ANCESTRAL SPECIES	32	ENSGT00920000149157	ENSGT00940000154992.b	ENSGT00940000160677	ENSGT00940000156210	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557 #12	ENSGT00940000161049 #14	ENSGT00940000159301 #15	ENSGT00940000165403	ENSGT00950000183019.f.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280 #23	ENSGT00940000155757	ENSGT01010000222287.B.a.b.a	ENSGT00580000081600.c.a	ENSGT00940000159935	ENSGT00940000161119	ENSGT00530000063891	ENSGT00940000159119.b	ENSGT00390000003759	ENSGT00390000007809.b	ENSGT00940000165657	ENSGT00950000185351	ENSGT00940000153458.A	ENSGT00940000160059.a.a	ENSGT00940000156321
Spotted gar	MODERN SPECIES	675	efr3a (ENSLOCG00000012671)	adcy8 (ENSLOCG00000012663)	BASP1 (ENSLOCG00000018160)	ENSLOCG00000012650	MARCHF11 (ENSLOCG00000012646)	ZNF622 (ENSLOCG00000012640)	ENSLOCG00000012630	vps4b (ENSLOCG00000012619)	kdsr (ENSLOCG00000012611)	bcl2a (ENSLOCG00000012609)	cox4i1l (ENSLOCG00000012604)	prkag2a (ENSLOCG00000012585) #17	GALNT11 (ENSLOCG00000012580) #19	KMT2C (ENSLOCG00000012568) #20	XRCC2 (ENSLOCG00000012562) #21	actr3b (ENSLOCG00000012554) #22	ENSLOCG00000012548	dpp6b (ENSLOCG00000012531) #23	paxip1 (ENSLOCG00000012517)	htr5ab (ENSLOCG00000012511)	insig1 (ENSLOCG00000012507)	en2b (ENSLOCG00000012504)	cnpy1 (ENSLOCG00000012499)	RBM33 (ENSLOCG00000012490)	shha (ENSLOCG00000012487)	rnf32 (ENSLOCG00000012477)	lmbr1 (ENSLOCG00000012464)	nom1 (ENSLOCG00000012452)	mnx1 (ENSLOCG00000012445)	ube3c (ENSLOCG00000012433)	DNAJB6 (ENSLOCG00000012427)
Osteoglossocephalai	ANCESTRAL SPECIES	254	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557 #12	ENSGT00940000159301 #15	ENSGT00940000165403	ENSGT00940000155020	ENSGT00940000161019	ENSGT00940000157124	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23
Clupeocephala	ANCESTRAL SPECIES	151	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403	ENSGT00940000155020.u.a.b	ENSGT00940000177454	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23
Otomorpha	ANCESTRAL SPECIES	115															ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000164792.a	ENSGT00940000155406.g	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105.k.a	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b
Otophysi	ANCESTRAL SPECIES	175															ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000164792.a	ENSGT00940000155406.g	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105.k.a	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b
Characiphysae	ANCESTRAL SPECIES	52	ENSGT00940000157002	ENSGT00940000156350.h	ENSGT00940000154811.B.a.a.b	ENSGT00940000153498.B.a	ENSGT00390000005508.b	ENSGT00940000156105.k.a	ENSGT00940000157951	ENSGT00940000155939.g	ENSGT00940000166789	ENSGT00940000155918.c.a	ENSGT00940000158727.b.a.a.a	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00940000166821.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.b #23	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000164792.a	ENSGT00940000155406.g	ENSGT00950000183110.b.b.k.a	ENSGT00940000155624.a.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000156998.j.a	ENSGT00940000154535.D.vb.a	ENSGT00530000063786.a	ENSGT00940000163518.l	ENSGT00940000160961	ENSGT00940000153601.a.b.c	ENSGT00940000155252.fb.a
Channel catfish	MODERN SPECIES		Abi1a (ENSIPUG00000002199)	pdss1 (ENSIPUG00000002251)	ENSIPUG00000002267	apbb1ip (ENSIPUG00000002288)	gad2 (ENSIPUG00000002296)	myo3a (ENSIPUG00000002332)	anxa13 (ENSIPUG00000002391)	ENSIPUG00000002436	GPR158 (ENSIPUG00000002451)	PTCHD3 (ENSIPUG00000002464)	GALNT11 (ENSIPUG00000002489) #19	ENSIPUG00000002547 #20	ENSIPUG00000002565	ENSIPUG00000002596	XRCC2 (ENSIPUG00000002601) #21	actr3b (ENSIPUG00000002616) #22	ENSIPUG00000002655	DPP6 (ENSIPUG00000002756) #23	telo2 (ENSIPUG00000002779)	vav3 (ENSIPUG00000002833)	NTNG1 (ENSIPUG00000002864)	prmt6 (ENSIPUG00000002889)	rnpc3 (ENSIPUG00000002916)	col11a1a (ENSIPUG00000002974)	olfm3a (ENSIPUG00000003097)	ENSIPUG00000003115	ENSIPUG00000003135	ENSIPUG00000003168	ENSIPUG00000003333	ARHGAP21 (ENSIPUG00000003415)	ENSIPUG00000003474
Characiphysae_b	ANCESTRAL SPECIES	55	ENSGT00940000157649	ENSGT00940000157002	ENSGT00940000156350.h	ENSGT00940000154811.B.a.a.b	ENSGT00940000153498.B.a	ENSGT00390000005508.b	ENSGT00940000156105.k.a	ENSGT00810000125439.A	ENSGT00940000157951	ENSGT00940000155939.g	ENSGT00940000166789	ENSGT00940000155918.c.a	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.b #23	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000164792.a	ENSGT00940000155406.g	ENSGT00950000183110.b.b.k.a	ENSGT00940000155624.a.a	ENSGT00950000182886.a.a.a.c	ENSGT00940000156998.j.a	ENSGT00940000154535.D.vb.a	ENSGT00530000063786.a	ENSGT00940000163518.l	ENSGT00940000160961	ENSGT00940000153601.a.b.c	ENSGT00940000155252.fb.a
Characoidei	ANCESTRAL SPECIES	46	ENSGT00940000157649	ENSGT00940000157002	ENSGT00940000156350.h	ENSGT00940000154811.B.a.a.b	ENSGT00940000153498.B.a	ENSGT00390000005508.b	ENSGT00940000156105.k.a	ENSGT00810000125439.A	ENSGT00940000157951	ENSGT00940000155939.g	ENSGT00940000166789	ENSGT00940000155918.c.a	ENSGT00940000158227 #19	ENSGT00940000155281 #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.b #23	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000164792.a	ENSGT00940000155406.g	ENSGT00940000160622.ab.a	ENSGT00940000155624.a.a.b	ENSGT00950000182886.a.a.a.c	ENSGT00940000156998.j.a	ENSGT00940000154535.D.vb.a	ENSGT00530000063786.a	ENSGT00940000163518.l	ENSGT00940000160961	ENSGT00940000153601.a.b.c	ENSGT00940000155252.fb.a
Red-bellied piranha	MODERN SPECIES	4	mastl (ENSPNAG00000005654)	acbd5a (ENSPNAG00000029918)	abi1a (ENSPNAG00000029906)	ENSPNAG00000029897	pdss1 (ENSPNAG00000029883)	ENSPNAG00000029861	apbb1ip (ENSPNAG00000029842)	ENSPNAG00000029828	gad2 (ENSPNAG00000029819)	myo3a (ENSPNAG00000029782)	anxa13 (ENSPNAG00000029726)	GPR158 (ENSPNAG00000029706)	GALNT11 (ENSPNAG00000029690) #19	ENSPNAG00000029657 #20	XRCC2 (ENSPNAG00000029645) #21	actr3b (ENSPNAG00000029635) #22	DPP6 (ENSPNAG00000029613) #23	ENSPNAG00000029435	ENSPNAG00000005440	enkur (ENSPNAG00000029398)	ENSPNAG00000004585	ARHGAP21 (ENSPNAG00000004578)	ENSPNAG00000029322
Mexicana tetra	MODERN SPECIES	69																actr3b (ENSAMXG00000030583) #22	DPP6 (ENSAMXG00000009337) #23	THNSL1 (ENSAMXG00000024905)	enkur (ENSAMXG00000038025)	ENSAMXG00000037519	ARHGAP21 (ENSAMXG00000032362)	ENSAMXG00000037161	ENSAMXG00000037881	ENSAMXG00000041494	ENSAMXG00000035858	ENSAMXG00000013965	ENSAMXG00000043983	abca4a (ENSAMXG00000016686)	ENSAMXG00000034162	olfm3a (ENSAMXG00000041934)	ENSAMXG00000033705
Electric eel	MODERN SPECIES	466															XRCC2 (ENSEEEG00000018823) #21	actr3b (ENSEEEG00000018818) #22	ENSEEEG00000018816
Cyprinoidei	ANCESTRAL SPECIES	21	ENSGT00390000003564	ENSGT00390000016974	ENSGT00940000156920	ENSGT00940000158768	ENSGT00940000165685	ENSGT00940000167839	ENSGT00940000165368	ENSGT00940000167630	ENSGT00520000055620.A	ENSGT01040000240385.A.a.b.a	ENSGT00940000154395.b	ENSGT00940000166481	ENSGT00950000182910.b.g.a	ENSGT00950000182881.a.a.b.i.a	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000164792.a	ENSGT00940000155406.g	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105.k.a	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b
Cyprininae	DUPLICATION
Cyprininae	ANCESTRAL SPECIES	274	ENSGT00940000167839.b	ENSGT00940000167839.a.a	ENSGT00940000165368.e.b	ENSGT00940000167630.a.b	ENSGT00520000055620.A	ENSGT01040000240385.A.a.b.a	ENSGT00940000166481.b	ENSGT00950000182910.b.g.a.c	ENSGT00940000154395.b	ENSGT00940000166481.a	ENSGT00950000182910.b.g.a.d	ENSGT00950000182881.a.a.b.i.a	ENSGT00940000158227.q #19	ENSGT00940000155281.q.b #20	ENSGT00390000020445.f #21	ENSGT00940000158304.a #22	ENSGT00940000156280.a.b.c.a #23	ENSGT00940000161144.e	ENSGT00940000153866.A.p	ENSGT00940000155406.g.b	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a.c	ENSGT00940000166789.b	ENSGT00390000013183.c	ENSGT00940000155939.f	ENSGT00940000157951.q	ENSGT00940000156105.k.a.b	ENSGT00390000005508.b	ENSGT00940000154811.B.a.a.b.e.a	ENSGT00940000154811.B.a.a.b.f	ENSGT00940000156350.h.a.a
Goldfish	MODERN SPECIES	16	ENSCARG00000018740	slc35b3 (ENSCARG00000018719)	EEF1E1 (ENSCARG00000018711)	bloc1s5 (ENSCARG00000018701)	txndc5 (ENSCARG00000018548)	bmp6 (ENSCARG00000018439)	ENSCARG00000018419	ENSCARG00000018396	zgc:56095 (ENSCARG00000018379)	ENSCARG00000018360	syt5b (ENSCARG00000018348)	cavin1b (ENSCARG00000018333)	GALNT11 (ENSCARG00000018296) #19	ENSCARG00000017840 #20	XRCC2 (ENSCARG00000017789) #21	actr3b (ENSCARG00000017483) #22	ENSCARG00000017441	ENSCARG00000017439	ENSCARG00000017434	DPP6 (ENSCARG00000017092) #23	THNSL1 (ENSCARG00000017057)	enkur (ENSCARG00000017048)	ARHGAP21 (ENSCARG00000015731)	PTCHD3 (ENSCARG00000015652)	GPR158 (ENSCARG00000015400)	anxa13 (ENSCARG00000015100)	ENSCARG00000015081	myo3a (ENSCARG00000014616)	GAD65 (ENSCARG00000014446)	apbb1ip (ENSCARG00000014401)	ENSCARG00000014375
Cyprininae_a	ANCESTRAL SPECIES	166	ENSGT00390000016974.a	ENSGT00940000156920.j	ENSGT00940000158768.a	ENSGT00940000165685.d	ENSGT00940000167839.a.a	ENSGT00940000165368.e.b	ENSGT00940000167630.a.b	ENSGT00520000055620.A	ENSGT01040000240385.A.a.b.a.c	ENSGT00940000166481.a	ENSGT00950000182910.b.g.a.d	ENSGT00950000182881.a.a.b.i.a.a	ENSGT00940000158227.q #19	ENSGT00940000155281.q.b #20	ENSGT00390000020445.f #21	ENSGT00940000158304.a #22	ENSGT00940000156280.a.b.c.a #23	ENSGT00940000161144.e	ENSGT00940000153866.A.p	ENSGT00940000164792.a.b	ENSGT00940000155406.g.b	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a.c	ENSGT00940000166789.b	ENSGT00390000013183.c	ENSGT00940000155939.f	ENSGT00940000157951.q	ENSGT00940000156105.k.a.b	ENSGT00390000005508.b	ENSGT00940000153498.B.a.n	ENSGT00940000154811.B.a.a.b.e.a
Common carp reference	MODERN SPECIES	40	EEF1E1 (ENSCCRG00000044358)	bloc1s5 (ENSCCRG00000044353)	txndc5 (ENSCCRG00000013720)	bmp6 (ENSCCRG00000013712)	zgc:101569 (ENSCCRG00000074389)	ENSCCRG00000022863	ENSCCRG00000030206	ENSCCRG00000022856	cavin1b (ENSCCRG00000022822)	ENSCCRG00000022834	syt5b (ENSCCRG00000022841)	atp6v0a1b (ENSCCRG00000022467)	GALNT11 (ENSCCRG00000014809) #19	ENSCCRG00000071945 #20	XRCC2 (ENSCCRG00000031665) #21	actr3b (ENSCCRG00000045362) #22	DPP6 (ENSCCRG00000073297) #23	ENSCCRG00000074787	THNSL1 (ENSCCRG00000034535)	enkur (ENSCCRG00000034539)	ARHGAP21 (ENSCCRG00000024101)	ENSCCRG00000025243	GPR158 (ENSCCRG00000028801)	anxa13 (ENSCCRG00000042382)	zgc:174877 (ENSCCRG00000022835)	myo3a (ENSCCRG00000019857)	gad2 (ENSCCRG00000004640)	ENSCCRG00000068949	apbb1ip (ENSCCRG00000073219)	pdss1 (ENSCCRG00000063907)	abi1a (ENSCCRG00000029926)
Golden-line barbel	MODERN SPECIES	384	EEF1E1 (ENSSGRG00000021610)	bloc1s5 (ENSSGRG00000021609)	txndc5 (ENSSGRG00000021313)	bmp6 (ENSSGRG00000021250)	zgc:101569 (ENSSGRG00000021249)	ENSSGRG00000021248	ENSSGRG00000021245	ENSSGRG00000021244	ENSSGRG00000021243	syt5b (ENSSGRG00000021242)	cavin1b (ENSSGRG00000021241)	atp6v0a1b (ENSSGRG00000017015)	GALNT11 (ENSSGRG00000016885) #19	ENSSGRG00000016882 #20	XRCC2 (ENSSGRG00000016881) #21	actr3b (ENSSGRG00000016694) #22
Cyprininae	ANCESTRAL SPECIES	1043													ENSGT00940000158227.r #19	ENSGT00940000155281.q.a #20	ENSGT00390000020445.e #21	ENSGT00940000158304.b #22
Goldfish	MODERN SPECIES	43	tfap2a (ENSCARG00000056156)	ENSCARG00000056304	ENSCARG00000056329	ENSCARG00000056340	ENSCARG00000056347	ENSCARG00000056377	slc35b3 (ENSCARG00000056382)	EEF1E1 (ENSCARG00000056411)	txndc5 (ENSCARG00000056442)	bmp6 (ENSCARG00000056616)	ENSCARG00000056733	ENSCARG00000056754	zgc:56095 (ENSCARG00000056809)	ATP6V0A1 (ENSCARG00000056860)	ENSCARG00000057268 #20	actr3b (ENSCARG00000057794) #22	plod2 (ENSCARG00000058120)	prmt6 (ENSCARG00000064382)	col11a1a (ENSCARG00000064513)	olfm3a (ENSCARG00000065405)	ENSCARG00000065424	abca4a (ENSCARG00000015566)	ENSCARG00000015789	fbxo45 (ENSCARG00000016048)	nrros (ENSCARG00000016059)	sh3glb1a (ENSCARG00000016065)	prkag2a (ENSCARG00000016235) #17	cox4i1l (ENSCARG00000019513)	bcl2a (ENSCARG00000019520)	ENSCARG00000019530	hs6st1b (ENSCARG00000019534)
Cyprininae_a	ANCESTRAL SPECIES	448	ENSGT00940000156920.i	ENSGT00940000158768.b	ENSGT00940000165685.c	ENSGT00940000167839.a.b	ENSGT00940000165368.e.a	ENSGT00940000167630.a.a	ENSGT00940000165368.f	ENSGT00940000167630.b	ENSGT01040000240385.A.a.b.a.d	ENSGT00940000166481.b	ENSGT00950000182910.b.g.a.c	ENSGT00950000182881.a.a.b.i.a.b	ENSGT00940000158227.r #19	ENSGT00940000155281.q.a #20	ENSGT00390000020445.e #21	ENSGT00940000158304.b #22
Golden-line barbel	MODERN SPECIES	593					txndc5 (ENSSGRG00000036288)	bmp6 (ENSSGRG00000036278)	zgc:101569 (ENSSGRG00000036277)	ENSSGRG00000036276	zgc:56095 (ENSSGRG00000036275)	ENSSGRG00000036273	syt5b (ENSSGRG00000036271)	cavin1b (ENSSGRG00000036270)	atp6v0a1b (ENSSGRG00000032334)	GALNT11 (ENSSGRG00000032266) #19	ENSSGRG00000032265 #20	actr3b (ENSSGRG00000032259) #22	ENSSGRG00000032258
Common carp reference	MODERN SPECIES	14	txndc5 (ENSCCRG00000054475)	bmp6 (ENSCCRG00000081999)	ENSCCRG00000080374	zgc:101569 (ENSCCRG00000022871)	ENSCCRG00000054030	ENSCCRG00000059298	ENSCCRG00000071110	ENSCCRG00000065126	ENSCCRG00000053430	syt5b (ENSCCRG00000082169)	ENSCCRG00000055262	atp6v0a1b (ENSCCRG00000042631)	GALNT11 (ENSCCRG00000022408) #19	ENSCCRG00000072712 #20	XRCC2 (ENSCCRG00000007878) #21	actr3b (ENSCCRG00000063251) #22	ENSCCRG00000053437	DPP6 (ENSCCRG00000072422) #23	enkur (ENSCCRG00000007337)	ENSCCRG00000007335	ARHGAP21 (ENSCCRG00000006385)	ENSCCRG00000080526	GPR158 (ENSCCRG00000022918)	ENSCCRG00000075312	ENSCCRG00000066907	ENSCCRG00000059774	anxa13 (ENSCCRG00000022852)	zgc:174877 (ENSCCRG00000042505)	myo3a (ENSCCRG00000005237)	gad2 (ENSCCRG00000020162)	apbb1ip (ENSCCRG00000029879)
Zebrafish	MODERN SPECIES	16	txndc5 (ENSDARG00000009342)	bmp6 (ENSDARG00000015686)	zgc:101569 (ENSDARG00000038876)	ENSDARG00000079401	ENSDARG00000079560	ENSDARG00000076055	zgc:56095 (ENSDARG00000018461)	ENSDARG00000078297	ENSDARG00000008164	syt5b (ENSDARG00000011640)	cavin1b (ENSDARG00000059362)	atp6v0a1b (ENSDARG00000015174)	galnt11 (ENSDARG00000063636)	ENSDARG00000079312 #20	XRCC2 (ENSDARG00000013933) #21	actr3b (ENSDARG00000008790) #22	ENSDARG00000089794	DPP6 (ENSDARG00000076826) #23	enkur (ENSDARG00000031248)	ENSDARG00000074528	ARHGAP21 (ENSDARG00000104295)	GPR158 (ENSDARG00000077134)	anxa13 (ENSDARG00000013976)	ENSDARG00000055476	zgc:174877 (ENSDARG00000079278)	myo3a (ENSDARG00000010186)	gad2 (ENSDARG00000015537)	ENSDARG00000096932	ENSDARG00000055506	apbb1ip (ENSDARG00000016505)	ENSDARG00000055520
Clupeiformes	ANCESTRAL SPECIES	231															ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23	ENSGT00940000161144	ENSGT00940000153866.A	ENSGT00940000164792.a	ENSGT00940000155406.g	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105.k.a	ENSGT00390000005508.b	ENSGT00940000153498.B.a	ENSGT00940000154811.B.a.a.b
Atlantic herring	MODERN SPECIES	8	ENSCHAG00000019277	ENSCHAG00000019270	ENSCHAG00000019264	ENSCHAG00000019247	ENSCHAG00000019193	ENSCHAG00000019180	ek1 (ENSCHAG00000018832)	hs6st1b (ENSCHAG00000018793)	bcl2a (ENSCHAG00000018783)	cox4i1l (ENSCHAG00000018779)	ENSCHAG00000018760	prkag2a (ENSCHAG00000015457) #17	ENSCHAG00000015334	ENSCHAG00000015135 #19	XRCC2 (ENSCHAG00000015129) #21	actr3b (ENSCHAG00000014123) #22	ENSCHAG00000014104	ENSCHAG00000014084	ENSCHAG00000014077	DPP6 (ENSCHAG00000013833) #23	THNSL1 (ENSCHAG00000013823)	enkur (ENSCHAG00000013817)	ENSCHAG00000013459	ARHGAP21 (ENSCHAG00000013387)	PTCHD3 (ENSCHAG00000013375)	GPR158 (ENSCHAG00000013030)	ENSCHAG00000012984	myo3a (ENSCHAG00000011556)	gad2 (ENSCHAG00000010888)	apbb1ip (ENSCHAG00000010773)	ENSCHAG00000010708
Euteleosteomorpha	ANCESTRAL SPECIES	31	ENSGT00920000149157.d	ENSGT00940000154992.a.b	ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000174963	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403.a	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158227 #19	ENSGT00940000155281.cb #20	ENSGT00940000166821.a	ENSGT00940000155281.bb.b #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23	ENSGT00490000043388.b.b	ENSGT00940000155406.g	ENSGT00940000164792.a	ENSGT00940000153866.A	ENSGT00940000161144	ENSGT00940000158727.b.a.a.a	ENSGT00940000155918.c.a	ENSGT00940000166789	ENSGT00390000013183.c	ENSGT00940000155939	ENSGT00940000157951	ENSGT00940000156105.k.a	ENSGT00390000005508.b	ENSGT00940000153498.B.a
Protacanthopterygii	ANCESTRAL SPECIES	14	ENSGT00970000194032	ENSGT01000000217386	ENSGT00990000204641.a	ENSGT00950000182917.b.a.a	ENSGT00940000155638.wb.a	ENSGT00940000154973.b	ENSGT00940000154973.a.a	ENSGT00940000156961	ENSGT01090000260003.a.b.b.a.a.b.a.b.b	ENSGT00950000183019.f.a.c.b #17	ENSGT00950000183116.a.a.a	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158227 #19	ENSGT00940000155281.cb #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b #23	ENSGT00490000043388.b.b	ENSGT00940000161182	ENSGT00940000166821.a	ENSGT00940000156280.a.a #23	ENSGT00940000155406.h	ENSGT00940000164792.b	ENSGT00940000163762.a.a	ENSGT00390000010047.g.b.a	ENSGT00940000168638	ENSGT01050000244838.H.d.c	ENSGT00950000183104.A.a.a	ENSGT00940000166060	ENSGT00530000063693.a.a	ENSGT00940000154805.b.g.e.b
Salmoninae	ANCESTRAL SPECIES	219									ENSGT00950000183071.a.a.b.c.b.a	ENSGT01090000260003.a.b.b.a.a.b.a.a.a	ENSGT00390000002407.c.j	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158227.u #19	ENSGT00940000155281.cb.`d.a.a #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.e #23	ENSGT00490000043388.b.b.f	ENSGT00940000153725.a.b.b	ENSGT00940000153694.B.e	ENSGT00530000063843.b.f	ENSGT00530000063834.e.a.c	ENSGT00940000157664	ENSGT00940000161026.f	ENSGT00390000000706	ENSGT00940000154775.c.b.k.a	ENSGT00940000156390	ENSGT00400000022103.a.j	ENSGT00940000157533.c.b.a	ENSGT00940000164582.a.e	ENSGT00390000013463.g.b
Huchen	MODERN SPECIES	667													ENSHHUG00000019056	ENSHHUG00000019053	ENSHHUG00000019051	actr3b (ENSHHUG00000018855) #22	ENSHHUG00000018830 #23
Salmoninae_a	ANCESTRAL SPECIES	35	ENSGT00940000159947.x	ENSGT00940000157008.h	ENSGT00390000009127.h	ENSGT00940000155450.d.b	ENSGT00940000156056.B.c.b.f	ENSGT00950000182910.a.b.b.k	ENSGT00940000164265.C	ENSGT00950000183071.a.a.b.c.b.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.b	ENSGT01090000260003.a.b.b.a.a.b.a.a.b	ENSGT00950000183019.f.a.c.a.a #17	ENSGT00940000158227.u #19	ENSGT00940000155281.cb.`d.a.a #20	ENSGT00390000020445.h #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.e #23	ENSGT00490000043388.b.b.f	ENSGT00940000153725.a.b.b	ENSGT00940000153694.B.e	ENSGT00530000063843.b.f	ENSGT00530000063834.e.a.c	ENSGT00940000157664	ENSGT00940000161026.f	ENSGT00390000000706	ENSGT00940000154775.c.b.k.a	ENSGT00940000156390	ENSGT00400000022103.a.j	ENSGT00940000157533.c.b.a	ENSGT00940000164582.a.e	ENSGT00390000013463.g.b
Salmo	ANCESTRAL SPECIES	34	ENSGT00940000157008.h	ENSGT00390000009127.h	ENSGT00940000155450.d.b	ENSGT00940000156056.B.c.b.f	ENSGT00950000182910.a.b.b.k	ENSGT00940000164265.C	ENSGT00950000183071.a.a.b.c.b.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.b	ENSGT01090000260003.a.b.b.a.a.b.a.a.b	ENSGT00950000183116.a.a.a.d	ENSGT00950000183019.f.a.c.a.a #17	ENSGT00940000158227.u #19	ENSGT00940000155281.cb.`d.a.a #20	ENSGT00390000020445.h #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.e #23	ENSGT00490000043388.b.b.f	ENSGT00940000153725.a.b.b	ENSGT00940000153694.B.e	ENSGT00530000063843.b.f	ENSGT00530000063834.e.a.c	ENSGT00940000157664	ENSGT00940000161026.f	ENSGT00390000000706	ENSGT00940000154775.c.b.k.a	ENSGT00940000156390	ENSGT00400000022103.a.j	ENSGT00940000157533.c.a	ENSGT00940000164582.a.e	ENSGT00390000013463.g.b
Atlantic salmon	MODERN SPECIES	21	ENSSSAG00000078799	ENSSSAG00000079403	ENSSSAG00000079405	ENSSSAG00000079418	ENSSSAG00000094614	ENSSSAG00000079503	ENSSSAG00000079509	ENSSSAG00000096289	ENSSSAG00000079520	ENSSSAG00000079550 #17	ENSSSAG00000080025	ENSSSAG00000073804 #19	ENSSSAG00000111264	ENSSSAG00000085628 #20	ENSSSAG00000091238	ENSSSAG00000080082 #22	ENSSSAG00000080113 #23	ENSSSAG00000080214	rgs9bp (ENSSSAG00000085950)	dph2 (ENSSSAG00000080219)	ncf2 (ENSSSAG00000080225)	garem (ENSSSAG00000080228)	ENSSSAG00000080230	ENSSSAG00000087860	ENSSSAG00000080248	ENSSSAG00000097597	ENSSSAG00000101583	ENSSSAG00000102242	ENSSSAG00000080254	ENSSSAG00000080262	ENSSSAG00000080267
River trout	MODERN SPECIES	36	CLVS1 (ENSSTUG00000024576)	riok3 (ENSSTUG00000023792)	rmc1 (ENSSTUG00000023485)	ENSSTUG00000017970	ENSSTUG00000017844	cavin4b (ENSSTUG00000017838)	ENSSTUG00000017359	hs6st1b (ENSSTUG00000017286)	ENSSTUG00000017234	bcl2a (ENSSTUG00000017221)	ENSSTUG00000017210	PRKAG2 (ENSSTUG00000014227) #17	GALNT11 (ENSSTUG00000014069) #19	ENSSTUG00000013790 #20	XRCC2 (ENSSTUG00000013767) #21	actr3b (ENSSTUG00000013598) #22	DPP6 (ENSSTUG00000013282) #23	ggh (ENSSTUG00000013227)	rgs9bp (ENSSTUG00000013198)	dph2 (ENSSTUG00000013191)	ncf2 (ENSSTUG00000013124)	garem (ENSSTUG00000013111)	ANKS6 (ENSSTUG00000013097)	ENSSTUG00000013087	zgc:162895 (ENSSTUG00000013059)	ENSSTUG00000013040	ENSSTUG00000012989	ENSSTUG00000013003	ssr1 (ENSSTUG00000012975)	ENSSTUG00000012963	shrprbck1r (ENSSTUG00000012913)
Oncorhynchus	ANCESTRAL SPECIES	27	ENSGT00940000159947.x	ENSGT00940000157008.h	ENSGT00390000009127.h	ENSGT00940000155450.d.b	ENSGT00940000156056.B.c.b.f	ENSGT00950000182910.a.b.b.k	ENSGT00940000164265.C	ENSGT00950000183071.a.a.b.c.b.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.b	ENSGT01090000260003.a.b.b.a.a.b.a.a.b	ENSGT00950000183019.f.a.c.a.a #17	ENSGT00940000158227.u #19	ENSGT00940000155281.cb.`d.a.a #20	ENSGT00390000020445.h #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.e #23	ENSGT00490000043388.b.b.f	ENSGT00940000153725.a.b.b	ENSGT00940000153694.B.e	ENSGT00530000063843.b.f	ENSGT00530000063834.e.a.c	ENSGT00940000157664	ENSGT00940000161026.f	ENSGT00390000000706	ENSGT00940000154775.c.b.k.a	ENSGT00940000156390	ENSGT00400000022103.a.j	ENSGT00940000157533.c.b.a	ENSGT00940000164582.a.e	ENSGT00940000159537.r
Rainbow trout	DUPLICATION
Rainbow trout	DUPLICATION
Rainbow trout	MODERN SPECIES	131															ENSOMYG00000072374	ENSOMYG00000052274 #22
Rainbow trout	MODERN SPECIES	6	ENSOMYG00000029682	ENSOMYG00000027768	ENSOMYG00000016434	ENSOMYG00000016072	ENSOMYG00000016061	ENSOMYG00000015740	ENSOMYG00000058868	ENSOMYG00000063665	ENSOMYG00000015532	ENSOMYG00000074889	ENSOMYG00000015521	ENSOMYG00000015495 #17	ENSOMYG00000015368 #19	ENSOMYG00000060112	ENSOMYG00000015213	ENSOMYG00000015075 #22	ENSOMYG00000014251 #23	ENSOMYG00000014043	rgs9bp (ENSOMYG00000014021)	dph2 (ENSOMYG00000014001)	ncf2 (ENSOMYG00000013918)	garem (ENSOMYG00000013823)	ENSOMYG00000013617	ENSOMYG00000060370	ENSOMYG00000013500	hus1 (ENSOMYG00000013488)	ENSOMYG00000074653	ENSOMYG00000013449	ENSOMYG00000013368	ENSOMYG00000013149	ENSOMYG00000013123
Rainbow trout	MODERN SPECIES	72															ENSOMYG00000057214	ENSOMYG00000053563 #22
Oncorhynchus_a	ANCESTRAL SPECIES	27	ENSGT00940000159947.x	ENSGT00940000157008.h	ENSGT00390000009127.h	ENSGT00940000155450.d.b	ENSGT00940000156056.B.c.b.f	ENSGT00950000182910.a.b.b.k	ENSGT00940000164265.C	ENSGT00950000183071.a.a.b.c.b.b	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.a	ENSGT01100000263516.a.b.b.b.b.a.a.a.a.a.a.a.a.a.c.a.b	ENSGT01090000260003.a.b.b.a.a.b.a.a.b	ENSGT00950000183019.f.a.c.a.a #17	ENSGT00940000158227.u #19	ENSGT00940000155281.cb.`d.a.a #20	ENSGT00390000020445.h #21	ENSGT00940000158304 #22	ENSGT00940000156280.a.b.e #23	ENSGT00490000043388.b.b.f	ENSGT00940000153725.a.b.b	ENSGT00940000153694.B.e.a	ENSGT00530000063843.b.f	ENSGT00530000063834.e.a.c	ENSGT00940000157664	ENSGT00940000161026.f	ENSGT00390000000706	ENSGT00940000154775.c.b.k.a	ENSGT00940000156390	ENSGT00400000022103.a.j	ENSGT00940000157533.c.b.a	ENSGT00940000164582.a.e	ENSGT00940000159537.r
Chinook salmon	DUPLICATION
Chinook salmon	MODERN SPECIES	21	CLVS1 (ENSOTSG00005028918)	ENSOTSG00005028856	riok3 (ENSOTSG00005028794)	rmc1 (ENSOTSG00005025911)	ENSOTSG00005013888	ENSOTSG00005013874	cavin4b (ENSOTSG00005013873)	ENSOTSG00005013871	hs6st1b (ENSOTSG00005013869)	ENSOTSG00005013865	bcl2a (ENSOTSG00005013863)	PRKAG2 (ENSOTSG00005009058) #17	GALNT11 (ENSOTSG00005008968) #19	ENSOTSG00005008958 #20	XRCC2 (ENSOTSG00005008953) #21	actr3b (ENSOTSG00005008906) #22	ENSOTSG00005008905	DPP6 (ENSOTSG00005008456) #23	ggh (ENSOTSG00005008454)	rgs9bp (ENSOTSG00005008453)	dph2 (ENSOTSG00005008452)	ncf2 (ENSOTSG00005008449)	garem (ENSOTSG00005008448)	ANKS6 (ENSOTSG00005008433)	RAMP3 (ENSOTSG00005008431)	zgc:162895 (ENSOTSG00005008430)	ENSOTSG00005008426	ssr1 (ENSOTSG00005008425)	RREB1 (ENSOTSG00005008422)	shrprbck1r (ENSOTSG00005008415)	foxh1 (ENSOTSG00005008414)
Chinook salmon	MODERN SPECIES	49	CLVS1 (ENSOTSG00005012359)	ENSOTSG00005012360	riok3 (ENSOTSG00005012361)	rmc1 (ENSOTSG00005012371)	ENSOTSG00005014608	ENSOTSG00005017041	cavin4b (ENSOTSG00005017042)	ENSOTSG00005017043	hs6st1b (ENSOTSG00005017044)	ENSOTSG00005017045	bcl2a (ENSOTSG00005017046)	PRKAG2 (ENSOTSG00005017083) #17	GALNT11 (ENSOTSG00005025433) #19	ENSOTSG00005025943 #20	XRCC2 (ENSOTSG00005025988) #21	actr3b (ENSOTSG00005025995) #22	DPP6 (ENSOTSG00005026250) #23	ggh (ENSOTSG00005027146)	rgs9bp (ENSOTSG00005027148)	dph2 (ENSOTSG00005027149)	ncf2 (ENSOTSG00005027153)	garem (ENSOTSG00005027187)	ANKS6 (ENSOTSG00005027196)	RAMP3 (ENSOTSG00005027202)	zgc:162895 (ENSOTSG00005027205)	ENSOTSG00005027208	ENSOTSG00005027217	ENSOTSG00005027221	ssr1 (ENSOTSG00005027225)	RREB1 (ENSOTSG00005027226)	shrprbck1r (ENSOTSG00005027228)
Coho salmon	MODERN SPECIES	2	RIOK3 (ENSOKIG00005050270)	RMC1 (ENSOKIG00005050276)	ENSOKIG00005050310	ENSOKIG00005050412	cavin4b (ENSOKIG00005050420)	ENSOKIG00005050450	ENSOKIG00005001958	HS6ST1 (ENSOKIG00005001975)	ENSOKIG00005002000	ENSOKIG00005002021	bcl2a (ENSOKIG00005002041)	PRKAG2 (ENSOKIG00005002135) #17	GALNT11 (ENSOKIG00005002420) #19	ENSOKIG00005002539 #20	ENSOKIG00005002558	actr3b (ENSOKIG00005002622) #22	DPP6 (ENSOKIG00005002941) #23	ENSOKIG00005003269	ENSOKIG00005003276	rgs9bp (ENSOKIG00005003298)	dph2 (ENSOKIG00005003301)	ncf2 (ENSOKIG00005003315)	garem (ENSOKIG00005003341)	ANKS6 (ENSOKIG00005003389)	ENSOKIG00005003452	ENSOKIG00005003457	zgc:162895 (ENSOKIG00005003476)	ENSOKIG00005003500	ENSOKIG00005003516	SSR1 (ENSOKIG00005003547)	RREB1 (ENSOKIG00005003570)
Northern pike	MODERN SPECIES	20	riok3 (ENSELUG00000017655)	rmc1 (ENSELUG00000017637)	EGFR (ENSELUG00000017562)	ENSELUG00000017478	tmeff1b (ENSELUG00000000677)	cavin4b (ENSELUG00000000673)	ENSELUG00000000663	hs6st1b (ENSELUG00000000652)	bcl2a (ENSELUG00000017262)	cox4i1l (ENSELUG00000017254)	ENSELUG00000017105	PRKAG2 (ENSELUG00000017217) #17	GALNT11 (ENSELUG00000017085) #19	KMT2C (ENSELUG00000033749) #20	XRCC2 (ENSELUG00000017010) #21	actr3b (ENSELUG00000016993) #22	DPP6 (ENSELUG00000000629) #23	ggh (ENSELUG00000016705)	ENSELUG00000016663	rgs9bp (ENSELUG00000016606)	zgc:165532 (ENSELUG00000033508)	dph2 (ENSELUG00000016563)	ncf2 (ENSELUG00000016544)	garem (ENSELUG00000016527)	PRKDC (ENSELUG00000016495)	ANKS6 (ENSELUG00000016336)	RAMP3 (ENSELUG00000016287)	zgc:162895 (ENSELUG00000016273)	ENSELUG00000030445	ENSELUG00000016239	ssr1 (ENSELUG00000016155)
Acanthomorphata	ANCESTRAL SPECIES	211									ENSGT00940000160677	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00390000010557 #12	ENSGT00940000155281.bb.b #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22	ENSGT00390000001844.a.a	ENSGT00940000155020.u.a.b	ENSGT00940000164558.j.b	ENSGT00940000157124	ENSGT00940000158929	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000157047.m.a.a	ENSGT00940000158052.a.g	ENSGT00530000063859.a	ENSGT00390000006777.b
Cod	MODERN SPECIES	15	ENSGMOG00000001440	ENSGMOG00000001587	ENSGMOG00000028987	slc35g2b (ENSGMOG00000019967)	ENSGMOG00000024071	bdh1 (ENSGMOG00000001721)	gyg1b (ENSGMOG00000001733)	cpb1 (ENSGMOG00000001752)	AGTR1 (ENSGMOG00000026261)	zic1 (ENSGMOG00000001788)	zic4 (ENSGMOG00000027121)	ENSGMOG00000001817	galnt11 (ENSGMOG00000011270)	KMT2C (ENSGMOG00000032418) #20	XRCC2 (ENSGMOG00000030367) #21	actr3b (ENSGMOG00000002876) #22	ENSGMOG00000014196	ENSGMOG00000032733	ENSGMOG00000031478	ENSGMOG00000006381 #17	ENSGMOG00000029764	ENSGMOG00000010417	ENSGMOG00000030087	ENSGMOG00000010493	sugct (ENSGMOG00000003877)	inhbaa (ENSGMOG00000025780)	inhbaa (ENSGMOG00000019414)	eci2 (ENSGMOG00000014040)	crygn2 (ENSGMOG00000014072) #15	ENSGMOG00000014083 #12	xylb (ENSGMOG00000014119)
Euacanthomorphacea	ANCESTRAL SPECIES																	ENSGT00940000158304 #22
Pinecone sodierfish	MODERN SPECIES	12	ENSMMDG00005014221	ENSMMDG00005014218	ENSMMDG00005006309	PRKAG2 (ENSMMDG00005006170) #17	ENSMMDG00005006168	ENSMMDG00005006162 #21	ENSMMDG00005006159 #20	galnt11 (ENSMMDG00005005986)	ENSMMDG00005005975	ENSMMDG00005005972	ENSMMDG00005005971	ENSMMDG00005005968	ENSMMDG00005005943	ENSMMDG00005005933	ENSMMDG00005005930	actr3b (ENSMMDG00005005668) #22	lama1 (ENSMMDG00005004354)	ENSMMDG00005004175	ENSMMDG00005004168	ENSMMDG00005004151	ENSMMDG00005004140	gcm2 (ENSMMDG00005003947)	ENSMMDG00005003935	napga (ENSMMDG00005003926)	ENSMMDG00005003922	ENSMMDG00005003916	zbtb14 (ENSMMDG00005003800)	ENSMMDG00005003786	ENSMMDG00005003772	ENSMMDG00005003768	ENSMMDG00005003741
Percomorphaceae	ANCESTRAL SPECIES																	ENSGT00940000158304 #22
Percomorphaceae_B	ANCESTRAL SPECIES	20	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227 #19	ENSGT00940000177274	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT01000000214434.D	ENSGT00940000179410	ENSGT00940000178005	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403.a	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT00940000156210.d	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b
Percomorphaceae_C	ANCESTRAL SPECIES	21	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227 #19	ENSGT00940000177274	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403.a	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT00940000156210.d	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C	ENSGT00940000176951
Eupercaria	ANCESTRAL SPECIES	34	ENSGT00940000157124	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00940000165841	ENSGT01100000263520.b.b.f	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000156056.B.c.b	ENSGT00940000155450.d	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866
Eupecaria_A	ANCESTRAL SPECIES	19	ENSGT00940000157124	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00940000165841	ENSGT01100000263520.b.b.f	ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155105	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00940000159301.c.a #15	ENSGT00390000010557 #12	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C
Eupecaria_B	DUPLICATION
Eupecaria_B	ANCESTRAL SPECIES																	ENSGT00940000158304.g #22
Eupecaria_C	ANCESTRAL SPECIES																	ENSGT00940000158304.g #22
Eupercaria_incertae_sedis	ANCESTRAL SPECIES																	ENSGT00940000158304.g #22
Large yellow croaker	MODERN SPECIES	267																ENSLCRG00005001756 #22
Eupecaria_B	ANCESTRAL SPECIES	37															ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304.h #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g	ENSGT00940000158929	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b
Perciformes	ANCESTRAL SPECIES	55		ENSGT00940000154456.hb.b	ENSGT00940000157047.m.a.a	ENSGT00940000157124	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304.h #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00940000165841	ENSGT01100000263520.b.b.f
Perciformes_a	ANCESTRAL SPECIES	100															ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304.h #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT01000000214731.a.b	ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b
Pike perch	MODERN SPECIES	242							xylb (ENSSLUG00000012467)	ENSSLUG00000012483	ENSSLUG00000012487	NUB1 (ENSSLUG00000012490) #12	crygn2 (ENSSLUG00000012523) #15	ENSSLUG00000012531	PRKAG2 (ENSSLUG00000012594) #17	ENSSLUG00000013780	ENSSLUG00000013784	actr3b (ENSSLUG00000013797) #22	ENSSLUG00000013852 #21	ENSSLUG00000013864	ENSSLUG00000013869	ENSSLUG00000013877	ENSSLUG00000013880	galnt11 (ENSSLUG00000013917)	chodl (ENSSLUG00000014463)	ENSSLUG00000014470	PTPRM (ENSSLUG00000014527)
Channel bull blenny	MODERN SPECIES	45														ENSCGOG00000021082	ENSCGOG00000021083	actr3b (ENSCGOG00000021088) #22	ENSCGOG00000021352 #21
Eupecaria_C	ANCESTRAL SPECIES	79															ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304.h #22	ENSGT00390000020445 #21	ENSGT00390000010557 #12	ENSGT01000000214434.D	ENSGT00940000156210.d
Eupercaria_incertae_sedis	ANCESTRAL SPECIES	80															ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304.h #22	ENSGT00390000020445 #21	ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000161979.B.o.cb	ENSGT00940000155274	ENSGT00940000155020.u.a.b	ENSGT00390000006777.b	ENSGT00940000158052.a.g	ENSGT00940000158929	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b	ENSGT00940000157047.m.a.a	ENSGT00940000157124
Large yellow croaker	MODERN SPECIES	488	TGFB1I1 (ENSLCRG00005002673)	ELOB (ENSLCRG00005002664)	pkmyt1 (ENSLCRG00005002662)	ENSLCRG00005002660	ENSLCRG00005002658	ENSLCRG00005002655	ENSLCRG00005002654	ENSLCRG00005002652	mylpfb (ENSLCRG00005002644)	pgap3 (ENSLCRG00005002633)	erbb2 (ENSLCRG00005001141)	acvr2ba (ENSLCRG00005000826)	ENSLCRG00005022701	ENSLCRG00005022693 #17	ENSLCRG00005022687	ENSLCRG00005022685 #22	ENSLCRG00005022682	ENSLCRG00005022680	ENSLCRG00005022675	ENSLCRG00005022674	ENSLCRG00005022673	CSNK1D (ENSLCRG00005022672)	slc16a3b (ENSLCRG00005022671)	ENSLCRG00005022668	ccdc57 (ENSLCRG00005022661)	ENSLCRG00005022654	ENSLCRG00005022653	rab3gap1 (ENSLCRG00005022648)	rint1 (ENSLCRG00005022630)	ENSLCRG00005022627	ENSLCRG00005022625
European seabass	MODERN SPECIES	20	L3MBTL4 (ENSDLAG00005002333)	ENSDLAG00005005807	ARHGAP28 (ENSDLAG00005027073)	ENSDLAG00005014685	ENSDLAG00005029451	ENSDLAG00005033428	ENSDLAG00005028169	ENSDLAG00005029535	ENSDLAG00005028407	ENSDLAG00005016042	ENSDLAG00005029358	ENSDLAG00005016728	ENSDLAG00005016740	ENSDLAG00005016841	ENSDLAG00005033869	ENSDLAG00005034321 #22	ENSDLAG00005028435 #21	ENSDLAG00005033167 #20	ENSDLAG00005032088	ENSDLAG00005002525 #17	ENSDLAG00005032319	ENSDLAG00005028795	acvr2ba (ENSDLAG00005018833)	xylb (ENSDLAG00005006579)	ENSDLAG00005013562	ENSDLAG00005006151 #12	crygn2 (ENSDLAG00005014582) #15	ENSDLAG00005027679	ENSDLAG00005016334	ENSDLAG00005027139	ENSDLAG00005017990
Percomorphaceae_D	ANCESTRAL SPECIES	33	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227 #19	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT01000000214434.D	ENSGT00390000010557 #12
Carangaria	ANCESTRAL SPECIES	39	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227 #19	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006
Carangaria_A	ANCESTRAL SPECIES	94	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT01090000260059.a.b.b.a.a.a.a.b.b.a.a	ENSGT00940000157124	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT01000000214731	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006
Seriola	ANCESTRAL SPECIES	138	ENSGT00940000157047.m.a.a	ENSGT00940000154456.hb.b	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT01000000214731.d	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000166821.a	ENSGT00940000155281.cb #20	ENSGT01100000263476.B.b.b.b.b.d.e
Yellowtail amberjack	MODERN SPECIES	2377																actr3b (ENSSLDG00000003923) #22	ENSSLDG00000003894	ENSSLDG00000003846 #20	ENSSLDG00000003814
Greater amberjack	MODERN SPECIES	185	ENSSDUG00000009795	L3MBTL4 (ENSSDUG00000009827)	ENSSDUG00000009869	zbtb14 (ENSSDUG00000009948)	ENSSDUG00000009985	ENSSDUG00000010019	gcm2 (ENSSDUG00000010050)	ENSSDUG00000010083	lrrc30a (ENSSDUG00000010156)	PTPRM (ENSSDUG00000010187)	ENSSDUG00000010305	chodl (ENSSDUG00000010315)	galnt11 (ENSSDUG00000010344)	ENSSDUG00000010372	ENSSDUG00000010386	actr3b (ENSSDUG00000010421) #22	ENSSDUG00000010448 #21	ENSSDUG00000010470	ENSSDUG00000010488 #20	ENSSDUG00000010520	ENSSDUG00000010541	ENSSDUG00000010609 #17	ENSSDUG00000011379
Barramundi perch	MODERN SPECIES	424	ENSLCAG00010016256	ENSLCAG00010016242	zbtb14 (ENSLCAG00010016230)	ENSLCAG00010016227	ENSLCAG00010016219	ENSLCAG00010016214	gcm2 (ENSLCAG00010016210)	ENSLCAG00010016209	ENSLCAG00010016208	chodl (ENSLCAG00010016204)	galnt11 (ENSLCAG00010016198)	ENSLCAG00010016193	ENSLCAG00010016188	ENSLCAG00010016187	BCL2 (ENSLCAG00010016185)	actr3b (ENSLCAG00010016183) #22	ENSLCAG00010016180 #21	ENSLCAG00010016176	ENSLCAG00010016149 #20	ENSLCAG00010016145	ENSLCAG00010016143	ENSLCAG00010016139	ENSLCAG00010016132	ENSLCAG00010016076 #17	ENSLCAG00010016056
Anabantaria	ANCESTRAL SPECIES	34				ENSGT00940000155020.u.a.b	ENSGT00940000154456.hb.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227 #19	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000165841	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155105	ENSGT00940000165403.a	ENSGT00940000159301.c.a #15	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C	ENSGT00940000176951
Anabantoidei	ANCESTRAL SPECIES	20				ENSGT00390000006777.b	ENSGT00940000158052.a.g	ENSGT00940000158929	ENSGT00940000158264.a	ENSGT00940000154456.hb.b	ENSGT00940000177454	ENSGT00940000155020.u.a.b	ENSGT00940000161979.B.o.cb	ENSGT00390000001844.a.a	ENSGT00940000158227 #19	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155105	ENSGT00940000165403.a	ENSGT00940000159301.c.a #15	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C	ENSGT01070000253760.b.a.a.a.a.b.b
Siamese fighting fish	DUPLICATION
Siamese fighting fish	MODERN SPECIES	15	acvr2ba (ENSBSLG00000007359)	ENSBSLG00000007602	ENSBSLG00000010164 #17	gcm2 (ENSBSLG00000012093)	ENSBSLG00000012127	ENSBSLG00000012202	zbtb14 (ENSBSLG00000012591)	ARHGAP28 (ENSBSLG00000012597)	ENSBSLG00000012617	TMEM200C (ENSBSLG00000012646)	ENSBSLG00000012716	PTPRM (ENSBSLG00000012738)	chodl (ENSBSLG00000013393)	GALNT11 (ENSBSLG00000013425) #19	ENSBSLG00000013547	actr3b (ENSBSLG00000013597) #22	ENSBSLG00000013895 #21	ENSBSLG00000013928 #20	ENSBSLG00000007789	ENSBSLG00000007804 #22	ENSBSLG00000007823 #21	ENSBSLG00000007865 #20	lama1 (ENSBSLG00000007979)	B3GNT3 (ENSBSLG00000008786)	ENSBSLG00000008901	ENSBSLG00000008930	B3GNT3 (ENSBSLG00000008950)	B3GNT3 (ENSBSLG00000008968)	B3GNT3 (ENSBSLG00000008981)	ENSBSLG00000008989	ENSBSLG00000009013
Siamese fighting fish	MODERN SPECIES	15	ENSBSLG00000012127	ENSBSLG00000012202	zbtb14 (ENSBSLG00000012591)	ARHGAP28 (ENSBSLG00000012597)	ENSBSLG00000012617	TMEM200C (ENSBSLG00000012646)	ENSBSLG00000012716	PTPRM (ENSBSLG00000012738)	chodl (ENSBSLG00000013393)	GALNT11 (ENSBSLG00000013425) #19	ENSBSLG00000013547	actr3b (ENSBSLG00000013597) #22	ENSBSLG00000013895 #21	ENSBSLG00000013928 #20	ENSBSLG00000007789	ENSBSLG00000007804 #22	ENSBSLG00000007823 #21	ENSBSLG00000007865 #20	lama1 (ENSBSLG00000007979)	B3GNT3 (ENSBSLG00000008786)	ENSBSLG00000008901	ENSBSLG00000008930	B3GNT3 (ENSBSLG00000008950)	B3GNT3 (ENSBSLG00000008968)	B3GNT3 (ENSBSLG00000008981)	ENSBSLG00000008989	ENSBSLG00000009013	ndufa7 (ENSBSLG00000009047)	MAST3 (ENSBSLG00000009091)	kank3 (ENSBSLG00000009686)	ANGPTL4 (ENSBSLG00000009723)
Climbing perch	MODERN SPECIES	11	ENSATEG00000014446	ENSATEG00000014503	ENSATEG00000025912	ENSATEG00000015785	ENSATEG00000029021	ENSATEG00000026943	ENSATEG00000014742	ENSATEG00000026866	ENSATEG00000014778	ENSATEG00000014794 #19	ENSATEG00000016585	ENSATEG00000014702	ENSATEG00000014879	ENSATEG00000014905	ENSATEG00000014943	ENSATEG00000014952 #22	ENSATEG00000015808	ENSATEG00000015031 #21	ENSATEG00000029922	ENSATEG00000015071	ENSATEG00000015082 #20	ENSATEG00000015118	ENSATEG00000015181 #20	ENSATEG00000015210	ENSATEG00000015233	ENSATEG00000015244	ENSATEG00000015256 #17	ENSATEG00000015285	ENSATEG00000015298 #17	ENSATEG00000015863	ENSATEG00000015416
Ovalentaria	ANCESTRAL SPECIES	30			ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155105	ENSGT00940000165403.a	ENSGT00940000159301.c.a #15	ENSGT00390000010557 #12	ENSGT00940000178005	ENSGT00940000179410	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000177274	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000158227 #19	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g	ENSGT00940000158929	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b
Atherinomorphae	ANCESTRAL SPECIES	19			ENSGT00940000157124	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000158227 #19	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403.a	ENSGT00940000155105	ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT01070000253760.b.a.a.a.a.b.b	ENSGT00390000000706	ENSGT00390000018596.A.b
Cyprinodontiformes	ANCESTRAL SPECIES	73		ENSGT00940000157124	ENSGT00940000157047.m.a.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000171629	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT00940000158304 #22	ENSGT00390000020445 #21
Cyprinodontoidei	ANCESTRAL SPECIES	2	ENSGT00940000164152.b	ENSGT00940000156342.c	ENSGT00940000161398.f	ENSGT00950000183115.a.a.b	ENSGT01040000240444.A.b.a.a	ENSGT00730000114072	ENSGT00940000156108	ENSGT00940000168638	ENSGT00390000008086.a	ENSGT00390000010047.g.b	ENSGT00940000163762.a.a	ENSGT00940000164792.b	ENSGT00940000155406.h	ENSGT00940000156280.a.a #23	ENSGT00940000166821.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00950000183019.f.a.c.b #17	ENSGT01090000260003.a.b.b.a.a.b.a.b.b	ENSGT00940000156961	ENSGT00940000154973.a.a	ENSGT00940000154973.b	ENSGT00940000155638.wb.a	ENSGT00950000182917.b.a.a	ENSGT00940000155295.z	ENSGT00940000163206.b.a.b	ENSGT00940000159287	ENSGT00940000156352	ENSGT00940000160354	ENSGT00940000156453.a
Poeciliinae	ANCESTRAL SPECIES	33	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT01090000260059.a.b.a.a.a.a	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000165633	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000165403.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21
Platyfish	DUPLICATION
Platyfish	MODERN SPECIES	13	TMEM200C (ENSXMAG00000023390)	L3MBTL4 (ENSXMAG00000014347)	ARHGAP28 (ENSXMAG00000014359)	zbtb14 (ENSXMAG00000023917)	ENSXMAG00000006035	ENSXMAG00000014378	ENSXMAG00000020349	ENSXMAG00000002726	lrrc30a (ENSXMAG00000002735)	ENSXMAG00000002749	ENSXMAG00000008079	ENSXMAG00000009291	galnt11 (ENSXMAG00000009292)	ENSXMAG00000007096 #17	ENSXMAG00000026735 #22	ENSXMAG00000005040 #22	ENSXMAG00000005031 #21	ENSXMAG00000028519	ENSXMAG00000026352 #20	ENSXMAG00000025478	ENSXMAG00000021426	ENSXMAG00000026804	skor1b (ENSXMAG00000027719)	ENSXMAG00000021231	ENSXMAG00000021415	ENSXMAG00000029200	msl2b (ENSXMAG00000004614)	tnfsf10 (ENSXMAG00000004606)	NCEH1 (ENSXMAG00000023029)	emc9 (ENSXMAG00000024981)	irf9 (ENSXMAG00000024197)
Platyfish	MODERN SPECIES	13	EPB41L3 (ENSXMAG00000014334)	TMEM200C (ENSXMAG00000023390)	L3MBTL4 (ENSXMAG00000014347)	ARHGAP28 (ENSXMAG00000014359)	zbtb14 (ENSXMAG00000023917)	ENSXMAG00000006035	ENSXMAG00000014378	ENSXMAG00000020349	ENSXMAG00000002726	lrrc30a (ENSXMAG00000002735)	ENSXMAG00000002749	ENSXMAG00000008079	ENSXMAG00000009291	galnt11 (ENSXMAG00000009292)	ENSXMAG00000007096 #17	ENSXMAG00000026735 #22	ENSXMAG00000005040 #22	ENSXMAG00000005031 #21	ENSXMAG00000028519	ENSXMAG00000026352 #20	ENSXMAG00000025478	ENSXMAG00000021426	ENSXMAG00000026804	skor1b (ENSXMAG00000027719)	ENSXMAG00000021231	ENSXMAG00000021415	ENSXMAG00000029200	msl2b (ENSXMAG00000004614)	tnfsf10 (ENSXMAG00000004606)	NCEH1 (ENSXMAG00000023029)	emc9 (ENSXMAG00000024981)
Poecilia	ANCESTRAL SPECIES	60	ENSGT00940000158264.a	ENSGT00940000158929	ENSGT00940000158052.a.g	ENSGT00940000177091	ENSGT01090000260059.a.b.a.a.a.a	ENSGT00530000063859.a	ENSGT00390000006777.b	ENSGT00940000164558.j.b	ENSGT00940000155020.u.a.b	ENSGT00940000165633	ENSGT00940000155274	ENSGT00390000001844.a.a	ENSGT00940000165841	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000165403.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000166821.a
NAME_6	ANCESTRAL SPECIES	590																ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000166821.a
Amazon molly	MODERN SPECIES	755														EFNA5 (ENSPFOG00000001121)	ENSPFOG00000001177	actr3b (ENSPFOG00000001260) #22	ENSPFOG00000001441 #21	ENSPFOG00000001796
Sailfin molly	MODERN SPECIES	2260															ENSPLAG00000018369	actr3b (ENSPLAG00000000421) #22	ENSPLAG00000018341 #21	ENSPLAG00000018273	ENSPLAG00000018257 #20
Guppy	MODERN SPECIES	6	ENSPREG00000010312	ENSPREG00000010324	ENSPREG00000010339	gnal (ENSPREG00000010351)	ENSPREG00000010361	ENSPREG00000010383	ENSPREG00000010408	ENSPREG00000010452	ENSPREG00000010480	ENSPREG00000010499	chodl (ENSPREG00000010529)	galnt11 (ENSPREG00000010578)	ENSPREG00000010637 #17	ENSPREG00000010664	ENSPREG00000010678	actr3b (ENSPREG00000010693) #22	ENSPREG00000010721 #21	ENSPREG00000010730	ENSPREG00000010755 #20
NAME_4	ANCESTRAL SPECIES																	ENSGT00940000158304 #22
Mummichog	MODERN SPECIES	1455													ENSFHEG00000018852	ENSFHEG00000018841	ENSFHEG00000018824 #17	ENSFHEG00000000483 #22
Oryzias	ANCESTRAL SPECIES	18	ENSGT00940000172372	ENSGT00390000007109	ENSGT00940000159742.sb	ENSGT01030000235637	ENSGT00940000159846.a.b	ENSGT00940000155829	ENSGT00440000038972	ENSGT00950000183207.a	ENSGT00390000002579	ENSGT00940000154539.a.a	ENSGT00390000012668.g.a	ENSGT00950000182955.a.a.a.g	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.a.b.e	ENSGT00980000198678.a	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403.a	ENSGT00940000155105	ENSGT00940000164060.n.l	ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00390000000706
Oryzias_b	ANCESTRAL SPECIES	16	ENSGT00520000055637.B	ENSGT00390000007109	ENSGT00940000159742.sb	ENSGT00940000159846.a.b	ENSGT00940000179315	ENSGT00940000155829	ENSGT00440000038972	ENSGT00950000183207.a	ENSGT00390000002579	ENSGT00940000154539.a.a	ENSGT00390000012668.g.a	ENSGT00950000182955.a.a.a.g	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.a.b.e	ENSGT00980000198678.a	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403.a	ENSGT00940000155105	ENSGT00940000164060.n.l	ENSGT00950000182923.B.a	ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b
Javanese ricefish	MODERN SPECIES	12	ENSOJAG00000022597	aoc1 (ENSOJAG00000022784)	alg14 (ENSOJAG00000022791)	cnn3b (ENSOJAG00000022796)	f3a (ENSOJAG00000022811)	abcd3a (ENSOJAG00000022905)	ENSOJAG00000023402	ENSOJAG00000023423 #17	ENSOJAG00000023470	ENSOJAG00000023472	ENSOJAG00000023476	ENSOJAG00000023479	ENSOJAG00000023484	ENSOJAG00000023486	ENSOJAG00000023489	actr3b (ENSOJAG00000023504) #22	ENSOJAG00000023516 #21	ENSOJAG00000023518 #20	acvr2ba (ENSOJAG00000023521)	xylb (ENSOJAG00000023527)	ENSOJAG00000023549 #12	crygn2 (ENSOJAG00000023555) #15	eci2 (ENSOJAG00000023591)	ENSOJAG00000023633	fasn2 (ENSOJAG00000023635)	ENSOJAG00000023639	ENSOJAG00000023640	sugct (ENSOJAG00000023661)	inhbaa (ENSOJAG00000023685)	ENSOJAG00000023701	ENSOJAG00000023767
Indian medaka	MODERN SPECIES	14	ENSOMEG00000001219	ENSOMEG00000001228	fbxw4 (ENSOMEG00000001232)	ENSOMEG00000001235	fgf8a (ENSOMEG00000001237)	slc2a15a (ENSOMEG00000001244)	ENSOMEG00000001247	OMG (ENSOMEG00000001250)	ENSOMEG00000001254	SMCO4 (ENSOMEG00000001257)	nlk2 (ENSOMEG00000001262)	ENSOMEG00000001266	NGEF (ENSOMEG00000001273)	mrps23 (ENSOMEG00000001278)	vezf1b (ENSOMEG00000001282)	ENSOMEG00000001291 #22	ENSOMEG00000001294 #21	ENSOMEG00000001297 #20	acvr2ba (ENSOMEG00000001302)	xylb (ENSOMEG00000001306)	ENSOMEG00000001312 #12	crygn2 (ENSOMEG00000001317) #15	ENSOMEG00000001321	eci2 (ENSOMEG00000001324)	fasn2 (ENSOMEG00000001328)	ENSOMEG00000001332	sugct (ENSOMEG00000001335)	inhbaa (ENSOMEG00000001338)	ENSOMEG00000001342	tmeff1b (ENSOMEG00000001345)	cavin4b (ENSOMEG00000001348)
Oryzias_a	ANCESTRAL SPECIES	55	ENSGT00940000153769.B	ENSGT00520000055637.B	ENSGT00940000172372	ENSGT00390000007109	ENSGT00940000159742.sb	ENSGT01030000235637	ENSGT00940000159846.a.b	ENSGT00940000155829	ENSGT00950000183207.a	ENSGT00390000002579	ENSGT00940000154539.a.a	ENSGT00390000012668.g.a	ENSGT00950000182955.a.a.a.g	ENSGT00980000198678.a	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT00940000155281.cb #20	ENSGT00940000156210.d	ENSGT01000000214434.D	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000165403.a	ENSGT00940000155105	ENSGT00940000164060.n.l	ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00390000000706
Chinese medaka	MODERN SPECIES	1116														ENSOSIG00000020307 #16	eci2 (ENSOSIG00000020305)	actr3b (ENSOSIG00000020229) #22	ENSOSIG00000020227 #21	ENSOSIG00000020226 #20	ENSOSIG00000020221 #12	crygn2 (ENSOSIG00000020216) #15	ENSOSIG00000020213
Japanese Medaka HdrR	MODERN SPECIES	12	vstm2a (ENSORLG00000019963)	ENSORLG00000004152	ift74 (ENSORLG00000004150)	ENSORLG00000023733	ENSORLG00000004140	ENSORLG00000004137	ENSORLG00000022532	ENSORLG00000004121	alg14 (ENSORLG00000004026)	cnn3b (ENSORLG00000021940)	aoc1 (ENSORLG00000004048)	ENSORLG00000004009	abcd3a (ENSORLG00000003998)	ENSORLG00000022401	ENSORLG00000003934 #17	actr3b (ENSORLG00000003906) #22	ENSORLG00000025423 #21	ENSORLG00000027146 #20	acvr2ba (ENSORLG00000003784)	xylb (ENSORLG00000003755)	ENSORLG00000003729 #12	crygn2 (ENSORLG00000003704) #15	ENSORLG00000025819	eci2 (ENSORLG00000003659)	ENSORLG00000003644	ENSORLG00000022135	ENSORLG00000003639	ENSORLG00000023496	sugct (ENSORLG00000003621)	inhbaa (ENSORLG00000025793)	ENSORLG00000027999
Ovalentaria_B	ANCESTRAL SPECIES	47					ENSGT00940000157866	ENSGT00940000157116.f	ENSGT00940000155105	ENSGT00940000165403.a	ENSGT00940000159301.c.a #15	ENSGT00390000010557 #12	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000177274	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000158227 #19	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000171629	ENSGT01100000263489.a.a.b.a.a.b.b.b.b.b.b.a	ENSGT00940000161979.B.o.cb.e	ENSGT00940000155020.u.a.b	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g	ENSGT00940000158929
Cichlidae	ANCESTRAL SPECIES	93													ENSGT00940000177274	ENSGT00970000193497	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000158227 #19	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b	ENSGT00980000198678	ENSGT01090000260059.a.b.b.a.a.a.a.b.b.a.a	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g
Pseudocrenilabrinae	ANCESTRAL SPECIES	34	ENSGT00940000164265.C.i.a.a	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT00980000198573.a.b.y.a.a	ENSGT01070000253760.b.a.a.a.a.b.b.k.a.b.a.a.a.a.b.b.b.b.a.a.a	ENSGT01100000263476.B.b.b.a.b.b.b.a.b.a.b	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000177274	ENSGT00970000193497.e	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000158227 #19	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b	ENSGT00980000198678	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g
Pseudocrenilabrinae_A	ANCESTRAL SPECIES	49	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C.i.a.a	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT01100000263476.B.b.b.a.b.b.b.a.b.a.b	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000177274	ENSGT00970000193497.e	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000158227 #19	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000171629	ENSGT00940000161979.B.o.cb.e	ENSGT00940000155020.u.a.b	ENSGT00980000198678	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.a.b	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g
Haplochromini	ANCESTRAL SPECIES	60	ENSGT00390000018596.A.b	ENSGT01060000248661.a.a	ENSGT01070000253760.b.a.a.a.a.b.b.k.a.b.a.a.b.b	ENSGT00940000155450.d	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C.i.a.a	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT01000000214434.D	ENSGT00940000178005	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00970000193497.e	ENSGT00940000177274	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000171629	ENSGT00940000161979.B.o.cb.e	ENSGT00940000155020.u.a.b	ENSGT00980000198678	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.a.b
Burton s mouthbrooder	MODERN SPECIES	692										sugct (ENSHBUG00000009346)	xylb (ENSHBUG00000009435)	ENSHBUG00000009449	ENSHBUG00000009466	ENSHBUG00000009476	ENSHBUG00000009485	actr3b (ENSHBUG00000009508) #22	ENSHBUG00000009521	ENSHBUG00000001113 #21	ENSHBUG00000009626 #20	ENSHBUG00000009640	galnt11 (ENSHBUG00000009696)	chodl (ENSHBUG00000009710)	ENSHBUG00000009720
Haplochromini_A	ANCESTRAL SPECIES	65	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C.i.a.a.b	ENSGT00940000164265.C.i.a.a.a.a	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000177753	ENSGT00940000177274.a	ENSGT00970000193497.e	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT00940000176853.D	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.b.e.a	ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b
P. nyererei	MODERN SPECIES	593							sugct (ENSPNYG00000000516)	ENSPNYG00000000494	ENSPNYG00000000477	acvr2ba (ENSPNYG00000000449)	ENSPNYG00000022030	ENSPNYG00000021963 #17	ENSPNYG00000021918	ENSPNYG00000021912	ENSPNYG00000021903	actr3b (ENSPNYG00000021889) #22	ENSPNYG00000021874 #21	ENSPNYG00000021861 #20	ENSPNYG00000021851	ENSPNYG00000021837	galnt11 (ENSPNYG00000021811)	ENSPNYG00000021795	ENSPNYG00000021776	ENSPNYG00000021753
Haplochromini_B	ANCESTRAL SPECIES	63	ENSGT00940000156056.B.c.b	ENSGT00950000182910.a.b.b	ENSGT00940000164265.C.i.a.a.b	ENSGT00940000164265.C.i.a.a.a.a	ENSGT00390000010557 #12	ENSGT00940000159301.c.a #15	ENSGT00940000155105	ENSGT00940000157116.f	ENSGT00940000157866	ENSGT01070000253760.b.a.a.a.a.b.b.k.a.b.a.b	ENSGT01000000214434.D	ENSGT00940000156210.d	ENSGT00940000177753	ENSGT00970000193497.e.b	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00970000193497.e.a	ENSGT00940000177274.b	ENSGT00950000183019.f.a.c.a.d #17	ENSGT00940000177274.a	ENSGT00390000020445 #21	ENSGT01060000249006	ENSGT01100000263513.a.a.b.b.b.b.a.a.b.b.b.e.a	ENSGT00940000165841	ENSGT00390000001844.a.a	ENSGT00940000155274	ENSGT00940000155020.u.a.b	ENSGT00980000198678	ENSGT01100000263513.a.a.b.b.b.b.b.a.b.a.b	ENSGT00390000006777.b	ENSGT00530000063859.a
Zebra mbuna	MODERN SPECIES	1112	ENSMZEG00005019955	ENSMZEG00005019958	ENSMZEG00005019978	ENSMZEG00005019982	ENSMZEG00005019985	tmem129 (ENSMZEG00005019988)	ENSMZEG00005019990	ENSMZEG00005019995	ENSMZEG00005019999	xylb (ENSMZEG00005020005)	acvr2ba (ENSMZEG00005020012)	ENSMZEG00005020024 #17	ENSMZEG00005020040	ENSMZEG00005020043	ENSMZEG00005020046	actr3b (ENSMZEG00005020053) #22	ENSMZEG00005020058	ENSMZEG00005020061 #21	ENSMZEG00005020064	ENSMZEG00005020067 #20	ENSMZEG00005020071	galnt11 (ENSMZEG00005020076)	chodl (ENSMZEG00005020080)	ENSMZEG00005020085	PTPRM (ENSMZEG00005020091)	ENSMZEG00005020098	ENSMZEG00005020103	ENSMZEG00005020107	ENSMZEG00005020111	lrrc30a (ENSMZEG00005020113)	ENSMZEG00005020118
Eastern happy	MODERN SPECIES	21	ENSACLG00000016724	ENSACLG00000016747	xylb (ENSACLG00000016993)	ENSACLG00000017049	ENSACLG00000017135	ENSACLG00000017178	ENSACLG00000017199 #17	ENSACLG00000017231	acvr2ba (ENSACLG00000017251)	acvr2ba (ENSACLG00000017290)	ENSACLG00000017324	ENSACLG00000017327 #17	ENSACLG00000017379	ENSACLG00000017390	ENSACLG00000017405	actr3b (ENSACLG00000017425) #22	ENSACLG00000017458	ENSACLG00000017471	ENSACLG00000017483 #21	ENSACLG00000017512 #20	ENSACLG00000017544	galnt11 (ENSACLG00000017559)	chodl (ENSACLG00000017585)	ENSACLG00000017621	PTPRM (ENSACLG00000017646)	ENSACLG00000017741	ENSACLG00000017752	ENSACLG00000017766	ENSACLG00000017777	lrrc30a (ENSACLG00000017781)	ENSACLG00000017797
Lyretail cichlid	MODERN SPECIES	502												ENSNBRG00000013016	acvr2ba (ENSNBRG00000013038)	ENSNBRG00000013063 #17	ENSNBRG00000013081	actr3b (ENSNBRG00000013092) #22	ENSNBRG00000013146 #21	ENSNBRG00000013251 #20	ENSNBRG00000013267	ENSNBRG00000013279	GALNT11 (ENSNBRG00000013308) #19	chodl (ENSNBRG00000013369)	PTPRM (ENSNBRG00000013458)	ENSNBRG00000013780	ENSNBRG00000013803	lrrc30a (ENSNBRG00000013820)	ENSNBRG00000013841	ENSNBRG00000013884	gnal (ENSNBRG00000013980)	ENSNBRG00000014009	zbtb14 (ENSNBRG00000014030)
Nile tilapia	MODERN SPECIES	21	ENSONIG00000040378	ENSONIG00000030180	ENSONIG00000030848	acvr2ba (ENSONIG00000017364)	ENSONIG00000017357	ENSONIG00000017367 #17	ENSONIG00000034313	chodl (ENSONIG00000017377)	GALNT11 (ENSONIG00000017375) #19	ENSONIG00000035507	ENSONIG00000029503	ENSONIG00000031657 #20	ENSONIG00000017373 #21	ENSONIG00000037738	ENSONIG00000017372	actr3b (ENSONIG00000017371) #22	ENSONIG00000031157	ENSONIG00000034147	ENSONIG00000039196	PTPRM (ENSONIG00000000129)	ENSONIG00000009887	ENSONIG00000009892	ENSONIG00000039555	ENSONIG00000030422	ENSONIG00000027272	ENSONIG00000039578	gcm2 (ENSONIG00000009885)	ENSONIG00000042382	ENSONIG00000035597	ENSONIG00000009877	zbtb14 (ENSONIG00000009875)
Midas cichlid	MODERN SPECIES	1424														ENSACIG00000017501	ENSACIG00000017511	actr3b (ENSACIG00000017519) #22	ENSACIG00000017539
Pomacentridae	ANCESTRAL SPECIES	155	ENSGT00940000155274	ENSGT00940000155020.u.a.b	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00530000063859.a	ENSGT00940000177091	ENSGT00940000158052.a.g	ENSGT00940000158929	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b	ENSGT00940000157047.m.a.a	ENSGT00940000157124	ENSGT00950000183019.f.a.c.a #17	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21
Pomacentridae_A	ANCESTRAL SPECIES	254											ENSGT00940000154456.hb.b	ENSGT00940000157047.m.a.a	ENSGT00940000157124	ENSGT00950000183019.f.a.c.a #17	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21
Amphiprion	ANCESTRAL SPECIES	223	ENSGT00940000155020.u.a.b	ENSGT00940000164558.j.b	ENSGT00390000006777.b	ENSGT00940000158052.a.g	ENSGT00940000158929.q.a	ENSGT00940000158929.q.b	ENSGT00940000158264.a	ENSGT00530000063698.a.b.d.b	ENSGT00940000154456.hb.b	ENSGT00390000016119	ENSGT00390000001763	ENSGT00940000157047.m.a.a	ENSGT00940000157124	ENSGT00950000183019.f.a.c.a #17	ENSGT01090000260003.a.b.b.a.a.b.a.b.a	ENSGT00940000158304 #22	ENSGT00390000020445 #21
Orange clownfish	MODERN SPECIES	14	ARHGAP28 (ENSAPEG00000000702)	ENSAPEG00000000659	ENSAPEG00000000650	ENSAPEG00000000600	ENSAPEG00000000498	selenok (ENSAPEG00000000477)	actr8 (ENSAPEG00000000422)	ENSAPEG00000000318	ENSAPEG00000024828	ENSAPEG00000024827	ENSAPEG00000024826	ENSAPEG00000024825	ENSAPEG00000024824	ENSAPEG00000024823 #17	ENSAPEG00000024821	actr3b (ENSAPEG00000024820) #22	ENSAPEG00000024819 #21	ENSAPEG00000024818	ENSAPEG00000024817	ENSAPEG00000024816	ENSAPEG00000024814 #20	ENSAPEG00000024813	ENSAPEG00000024812	cavin4b (ENSAPEG00000024810)	ENSAPEG00000024803	ENSAPEG00000024797	ENSAPEG00000024795	chodl (ENSAPEG00000024787)	galnt11 (ENSAPEG00000024780)
Spiny chromis	MODERN SPECIES	1471											ENSAPOG00000005143	ENSAPOG00000005254	lama1 (ENSAPOG00000005460)	ENSAPOG00000006000 #17	ENSAPOG00000006095	actr3b (ENSAPOG00000006165) #22	ENSAPOG00000006191 #21
Bicolor damselfish	MODERN SPECIES	1290										ENSSPAG00000017891	cavin4b (ENSSPAG00000018046)	tmeff1b (ENSSPAG00000018058)	ENSSPAG00000018106	ENSSPAG00000018166 #17	ENSSPAG00000018194	actr3b (ENSSPAG00000018218) #22	ENSSPAG00000018279	ENSSPAG00000018296 #21	ENSSPAG00000018315 #20	ENSSPAG00000018338
Osteoglossiformes	ANCESTRAL SPECIES	119	ENSGT00940000160354	ENSGT00940000156352.d	ENSGT00940000159287.i	ENSGT00940000163206.b.b	ENSGT00390000017571	ENSGT00940000155295.y	ENSGT00950000182917.b.a.b	ENSGT00940000153321.b.a	ENSGT00940000153902.a	ENSGT01090000260003.a.b.b.a.a.b.a.a	ENSGT00390000002407.c.c	ENSGT00950000183019.f.a.c.a #17	ENSGT00940000158227 #19	ENSGT00940000155281.o #20	ENSGT00390000020445 #21	ENSGT00940000158304 #22
Asian bonytongue	MODERN SPECIES	10	TAF4B (ENSSFOG00015010259)	psma8 (ENSSFOG00015010234)	SS18 (ENSSFOG00015010184)	ZNF521 (ENSSFOG00015010128)	ENSSFOG00015024307	impact (ENSSFOG00015028822)	OSBPL1A (ENSSFOG00015009895)	ENSSFOG00015009492	ankrd29 (ENSSFOG00015009434)	bcl2a (ENSSFOG00015029290)	cox4i1l (ENSSFOG00015033082)	PRKAG2 (ENSSFOG00015009377) #17	GALNT11 (ENSSFOG00015009344) #19	KMT2C (ENSSFOG00015030733) #20	XRCC2 (ENSSFOG00015009252) #21	actr3b (ENSSFOG00015009213) #22	ENSSFOG00015025902	DPP6 (ENSSFOG00015009065) #23	ARHGAP21 (ENSSFOG00015008974)	enkur (ENSSFOG00015018736)	ENSSFOG00015018722	enkur (ENSSFOG00015027948)	THNSL1 (ENSSFOG00015018709)	GPR158 (ENSSFOG00015018686)	anxa13 (ENSSFOG00015018640)	ENSSFOG00015018633	ENSSFOG00015018308	gad2 (ENSSFOG00015029023)	ENSSFOG00015026839	apbb1ip (ENSSFOG00015017914)	ENSSFOG00015017877
P. kingsleyae	MODERN SPECIES	226	ZNF521 (ENSPKIG00000017121)	ENSPKIG00000017178	ENSPKIG00000017201	impact (ENSPKIG00000017235)	OSBPL1A (ENSPKIG00000017293)	ttc39c (ENSPKIG00000017393)	ENSPKIG00000017416	ankrd29 (ENSPKIG00000017446)	ENSPKIG00000017466	bcl2a (ENSPKIG00000017475)	ENSPKIG00000017491	prkag2a (ENSPKIG00000017549) #17	GALNT11 (ENSPKIG00000017665) #19	ENSPKIG00000017700 #20	XRCC2 (ENSPKIG00000017715) #21	actr3b (ENSPKIG00000017758) #22