Murinae	ANCESTRAL SPECIES	9	ENSGT00940000154695	ENSGT00390000002231.d.b	ENSGT00940000157137	ENSGT00940000155053	ENSGT00720000108792.B	ENSGT00940000156532	ENSGT00940000157295	ENSGT00390000004553 #15	ENSGT00940000155126 #16	ENSGT01050000247708 #17	ENSGT00390000008926 #18	ENSGT00940000156882 #19	ENSGT00390000015276	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00390000016988.a.b ##24	ENSGT00940000158542 #25	ENSGT00940000155890 #26	ENSGT00390000000539 #27	ENSGT00940000155400.B #28	ENSGT00940000154044.a.b #29	ENSGT01050000244848.A.a.g.a #30	ENSGT01050000244848.A.a.g.b #31	ENSGT00390000016794.b #32	ENSGT00390000010256 #33	ENSGT00940000153648.a #34	ENSGT00940000158887 #37	ENSGT01050000244890.a.b.a #35	ENSGT00940000154101.a	ENSGT00940000160799
Mus	ANCESTRAL SPECIES	5	ENSGT00940000154695	ENSGT00390000002231.d.b	ENSGT00940000157137	ENSGT00940000155053	ENSGT00720000108792.B	ENSGT00940000156532	ENSGT00940000157295	ENSGT00390000004553 #15	ENSGT00940000155126 #16	ENSGT01050000247708 #17	ENSGT00390000008926 #18	ENSGT00940000156882 #19	ENSGT00390000015276	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00680000100065 #23	ENSGT00390000016988.a.b ##24	ENSGT00940000158542 #25	ENSGT00940000155890 #26	ENSGT00390000000539 #27	ENSGT00940000155400.B #28	ENSGT00940000154044.a.b #29	ENSGT01050000244848.A.a.g.a #30	ENSGT01050000244848.A.a.g.b #31	ENSGT00390000016794.b #32	ENSGT00390000010256 #33	ENSGT00940000153648.a #34	ENSGT00940000158887 #37	ENSGT01050000244890.a.b.a #35	ENSGT00940000154101.a
Mus_A	ANCESTRAL SPECIES	5	ENSGT00940000154695	ENSGT00390000002231.d.b	ENSGT00940000157137	ENSGT00940000155053	ENSGT00720000108792.B	ENSGT00940000156532	ENSGT00940000157295	ENSGT00390000004553 #15	ENSGT00940000155126 #16	ENSGT01050000247708 #17	ENSGT00390000008926 #18	ENSGT00940000156882 #19	ENSGT00390000015276	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00680000100065 #23	ENSGT00390000016988.a.b ##24	ENSGT00940000158542 #25	ENSGT00940000155890 #26	ENSGT00390000000539 #27	ENSGT00940000155400.B #28	ENSGT00940000154044.a.b #29	ENSGT01050000244848.A.a.g.a #30	ENSGT01050000244848.A.a.g.b #31	ENSGT00390000016794.b #32	ENSGT00390000010256 #33	ENSGT00940000153648.a #34	ENSGT00940000158887 #37	ENSGT01050000244890.a.b.a #35	ENSGT00940000154101.a
Mus_B	ANCESTRAL SPECIES	7	ENSGT00940000154695	ENSGT00390000002231.d.b	ENSGT00940000157137	ENSGT00940000155053	ENSGT00720000108792.B	ENSGT00940000156532	ENSGT00940000157295	ENSGT00390000004553 #15	ENSGT00940000155126 #16	ENSGT01050000247708 #17	ENSGT00390000008926 #18	ENSGT00940000156882 #19	ENSGT00390000015276	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00680000100065 #23	ENSGT00390000016988.a.b ##24	ENSGT00940000158542 #25	ENSGT00940000155890 #26	ENSGT00390000000539 #27	ENSGT00940000155400.B #28	ENSGT00940000154044.a.b #29	ENSGT01050000244848.A.a.g.a #30	ENSGT01050000244848.A.a.g.b #31	ENSGT00390000016794.b #32	ENSGT00390000010256 #33	ENSGT00940000153648.a #34	ENSGT01050000244890.a.b.a #35	ENSGT00940000158887 #37	ENSGT00940000154101.a
Mus_C	ANCESTRAL SPECIES	1	ENSGT00940000154695	ENSGT00390000002231.d.b	ENSGT00940000157137	ENSGT00940000155053	ENSGT00720000108792.B	ENSGT00940000156532	ENSGT00940000157295	ENSGT00390000004553 #15	ENSGT00940000155126 #16	ENSGT01050000247708 #17	ENSGT00390000008926 #18	ENSGT00940000156882 #19	ENSGT00390000015276	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00390000016988.a.b ##24	ENSGT00940000158542 #25	ENSGT00940000155890 #26	ENSGT00390000000539 #27	ENSGT00940000155400.B #28	ENSGT00940000154044.a.b #29	ENSGT01050000244848.A.a.g.a #30	ENSGT01050000244848.A.a.g.b #31	ENSGT00390000016794.b #32	ENSGT00390000010256 #33	ENSGT00940000153648.a #34	ENSGT01050000244890.a.b.a #35	ENSGT00940000158887 #37	ENSGT00940000154101.a	ENSGT00940000160799
Steppe mouse	MODERN SPECIES	3423									Atic (ENSMSIG00000022430) #15	Fn1 (ENSMSIG00000021272) #16	ENSMSIG00000021254 #17	Mreg (ENSMSIG00000021214) #18	Pecr (ENSMSIG00000021168) #19	ENSMSIG00000021121 #20	Marchf4 (ENSMSIG00000021049) #21	Smarcal1 (ENSMSIG00000021024) #22	Ankar (ENSMSIG00000020863) #23	ENSMSIG00000020836 #24	Igfbp2 (ENSMSIG00000020825) #25	Igfbp5 (ENSMSIG00000020803) #26	ENSMSIG00000020791 #27	Tns1 (ENSMSIG00000020037) #28	Rufy4 (ENSMSIG00000020004) #29	Cxcr2 (ENSMSIG00000020001) #30	Cxcr1 (ENSMSIG00000019993) #31	Arpc2 (ENSMSIG00000019942) #32	Gpbar1 (ENSMSIG00000019937) #33	Aamp (ENSMSIG00000019900) #34	ENSMSIG00000019883 #35	ENSMSIG00000019882 #36	Pnkd (ENSMSIG00000019825) #37
spretus	MODERN SPECIES		Lancl1 (MGP_SPRETEiJ_G0015037)	Cps1 (MGP_SPRETEiJ_G0015038)	Erbb4 (MGP_SPRETEiJ_G0015039)	Ikzf2 (MGP_SPRETEiJ_G0015040)	Spag16 (MGP_SPRETEiJ_G0015041)	Vwc2l (MGP_SPRETEiJ_G0015042)	Bard1 (MGP_SPRETEiJ_G0015043)	Abca12 (MGP_SPRETEiJ_G0015044)	Atic (MGP_SPRETEiJ_G0015045) #15	Fn1 (MGP_SPRETEiJ_G0015046) #16	Mreg (MGP_SPRETEiJ_G0015047) #18	Pecr (MGP_SPRETEiJ_G0015048) #19	Tmem169 (MGP_SPRETEiJ_G0015049)	Xrcc5 (MGP_SPRETEiJ_G0015050) #20	Marchf4 (MGP_SPRETEiJ_G0015051) #21	Smarcal1 (MGP_SPRETEiJ_G0015052) #22	Rpl37a (MGP_SPRETEiJ_G0015053) ##24	Igfbp2 (MGP_SPRETEiJ_G0015054) #25	Igfbp5 (MGP_SPRETEiJ_G0015055) #26	Tnp1 (MGP_SPRETEiJ_G0015056) #27	Tns1 (MGP_SPRETEiJ_G0015057) #28	Rufy4 (MGP_SPRETEiJ_G0015058) #29	Cxcr2 (MGP_SPRETEiJ_G0015059) #30	MGP_SPRETEiJ_G0015060	Arpc2 (MGP_SPRETEiJ_G0015061) #32	Gpbar1 (MGP_SPRETEiJ_G0015062) #33	Aamp (MGP_SPRETEiJ_G0015063) #34	Pnkd (MGP_SPRETEiJ_G0015064) #37	Tmbim1 (MGP_SPRETEiJ_G0015065) #35	Catip (MGP_SPRETEiJ_G0015066)	Slc11a1 (MGP_SPRETEiJ_G0015067)
Mouse	MODERN SPECIES		Lancl1 (ENSMUSG00000026000)	Cps1 (ENSMUSG00000025991)	Erbb4 (ENSMUSG00000062209)	Ikzf2 (ENSMUSG00000025997)	Spag16 (ENSMUSG00000053153)	Vwc2l (ENSMUSG00000045648)	Bard1 (ENSMUSG00000026196)	Abca12 (ENSMUSG00000050296)	Atic (ENSMUSG00000026192) #15	Fn1 (ENSMUSG00000026193) #16	Mreg (ENSMUSG00000039395) #18	Pecr (ENSMUSG00000026189) #19	Tmem169 (ENSMUSG00000026188)	Xrcc5 (ENSMUSG00000026187) #20	Marchf4 (ENSMUSG00000039372) #21	Smarcal1 (ENSMUSG00000039354) #22	Ankar (ENSMUSG00000039342) #23	Rpl37a (ENSMUSG00000046330) ##24	Igfbp2 (ENSMUSG00000039323) #25	Igfbp5 (ENSMUSG00000026185) #26	Tnp1 (ENSMUSG00000026182) #27	Tns1 (ENSMUSG00000055322) #28	Rufy4 (ENSMUSG00000061815) #29	Cxcr2 (ENSMUSG00000026180) #30	Cxcr1 (ENSMUSG00000048480) #31	Arpc2 (ENSMUSG00000006304) #32	Gpbar1 (ENSMUSG00000064272) #33	Aamp (ENSMUSG00000006299) #34	Pnkd (ENSMUSG00000026179) #37	Tmbim1 (ENSMUSG00000006301) #35	Catip (ENSMUSG00000073650)
Ryukyu mouse	MODERN SPECIES		Lancl1 (MGP_CAROLIEiJ_G0014230)	Cps1 (MGP_CAROLIEiJ_G0014231)	Erbb4 (MGP_CAROLIEiJ_G0014232)	Ikzf2 (MGP_CAROLIEiJ_G0014233)	Spag16 (MGP_CAROLIEiJ_G0014234)	Vwc2l (MGP_CAROLIEiJ_G0014235)	Bard1 (MGP_CAROLIEiJ_G0014236)	Abca12 (MGP_CAROLIEiJ_G0014237)	Atic (MGP_CAROLIEiJ_G0014238) #15	Fn1 (MGP_CAROLIEiJ_G0014239) #16	Mreg (MGP_CAROLIEiJ_G0014240) #18	Pecr (MGP_CAROLIEiJ_G0014241) #19	Tmem169 (MGP_CAROLIEiJ_G0014242)	Xrcc5 (MGP_CAROLIEiJ_G0014243) #20	Marchf4 (MGP_CAROLIEiJ_G0014244) #21	Smarcal1 (MGP_CAROLIEiJ_G0014245) #22	Ankar (MGP_CAROLIEiJ_G0014246) #23	Rpl37a (MGP_CAROLIEiJ_G0014247) ##24	Igfbp2 (MGP_CAROLIEiJ_G0014248) #25	Igfbp5 (MGP_CAROLIEiJ_G0014249) #26	Tnp1 (MGP_CAROLIEiJ_G0014250) #27	Tns1 (MGP_CAROLIEiJ_G0014251) #28	Rufy4 (MGP_CAROLIEiJ_G0014252) #29	Cxcr2 (MGP_CAROLIEiJ_G0014253) #30	Cxcr1 (MGP_CAROLIEiJ_G0014254) #31	Arpc2 (MGP_CAROLIEiJ_G0014255) #32	Gpbar1 (MGP_CAROLIEiJ_G0014256) #33	Aamp (MGP_CAROLIEiJ_G0014257) #34	Pnkd (MGP_CAROLIEiJ_G0014258) #37	Tmbim1 (MGP_CAROLIEiJ_G0014259) #35	Catip (MGP_CAROLIEiJ_G0014260)
Shrew mouse	MODERN SPECIES	18	Lancl1 (MGP_PahariEiJ_G0027468)	Cps1 (MGP_PahariEiJ_G0027469)	Erbb4 (MGP_PahariEiJ_G0027470)	Ikzf2 (MGP_PahariEiJ_G0027471)	Spag16 (MGP_PahariEiJ_G0027472)	Vwc2l (MGP_PahariEiJ_G0027473)	Bard1 (MGP_PahariEiJ_G0027474)	Abca12 (MGP_PahariEiJ_G0027475)	Atic (MGP_PahariEiJ_G0027476) #15	Fn1 (MGP_PahariEiJ_G0027477) #16	Mreg (MGP_PahariEiJ_G0027478) #18	Pecr (MGP_PahariEiJ_G0027479) #19	Tmem169 (MGP_PahariEiJ_G0027480)	Xrcc5 (MGP_PahariEiJ_G0027481) #20	Marchf4 (MGP_PahariEiJ_G0027482) #21	Smarcal1 (MGP_PahariEiJ_G0027483) #22	Ankar (MGP_PahariEiJ_G0027484) #23	Rpl37a (MGP_PahariEiJ_G0027485) ##24	Igfbp2 (MGP_PahariEiJ_G0027486) #25	Igfbp5 (MGP_PahariEiJ_G0027487) #26	Tnp1 (MGP_PahariEiJ_G0027488) #27	Tns1 (MGP_PahariEiJ_G0027489) #28	Rufy4 (MGP_PahariEiJ_G0027490) #29	Cxcr2 (MGP_PahariEiJ_G0027491) #30	Cxcr1 (MGP_PahariEiJ_G0027492) #31	Arpc2 (MGP_PahariEiJ_G0027493) #32	Gpbar1 (MGP_PahariEiJ_G0027494) #33	Aamp (MGP_PahariEiJ_G0027495) #34	Pnkd (MGP_PahariEiJ_G0027496) #37	Tmbim1 (MGP_PahariEiJ_G0027497) #35	MGP_PahariEiJ_G0027498
Rat	MODERN SPECIES	19	Ikzf2 (ENSRNOG00000027430)	LOC102550841 (ENSRNOG00000054475)	ENSRNOG00000069358	Vwc2l (ENSRNOG00000027400)	Bard1 (ENSRNOG00000014960)	Abca12 (ENSRNOG00000015248)	Atic (ENSRNOG00000015511) #15	Fn1 (ENSRNOG00000014288) #16	AABR07068042.1 (ENSRNOG00000037894) #17	Mreg (ENSRNOG00000015774) #18	Pecr (ENSRNOG00000055295) #19	Tmem169 (ENSRNOG00000016091)	Xrcc5 (ENSRNOG00000016105) #20	Marchf4 (ENSRNOG00000016472) #21	ENSRNOG00000063848	Smarcal1 (ENSRNOG00000016503) #22	ENSRNOG00000063418 ##24	Igfbp2 (ENSRNOG00000016957) #25	Igfbp5 (ENSRNOG00000017206) #26	Tnp1 (ENSRNOG00000017611) #27	Tns1 (ENSRNOG00000014182) #28	Rufy4 (ENSRNOG00000032991) #29	Cxcr2 (ENSRNOG00000063618) #30	Cxcr1 (ENSRNOG00000048239) #31	Arpc2 (ENSRNOG00000014289) #32	Gpbar1 (ENSRNOG00000058260) #33	Aamp (ENSRNOG00000014399) #34	Pnkd (ENSRNOG00000014806) #37	ENSRNOG00000062745	Tmbim1 (ENSRNOG00000014797) #35	Catip (ENSRNOG00000037835)