Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00530000063186.b.b	ENSGT00940000157192	ENSGT00940000154695	ENSGT00940000157137	ENSGT00940000155053	ENSGT00720000108792.B	ENSGT00940000156532	ENSGT00940000157295	ENSGT00390000004553	ENSGT00940000155126	ENSGT00390000008926	ENSGT00940000156882 #18	ENSGT00390000015276 #19	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00390000016988.a.b #23	ENSGT00940000158542 #24	ENSGT00940000155890 #25	ENSGT00390000000539 #26	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a #28	ENSGT01050000244848.A.a.g.b #29	ENSGT00390000016794.b.eb.a #30	ENSGT00390000010256 #31	ENSGT00940000153648.a #32	ENSGT00530000065055	ENSGT01050000244890.a.b.a #33	ENSGT00940000158887 #34	ENSGT00940000154101.a #35
Hystricomorpha_a	ANCESTRAL SPECIES	32												ENSGT00940000156882 #18	ENSGT00390000015276 #19	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00390000016988.a.b #23	ENSGT00940000158542 #24	ENSGT00940000155890 #25	ENSGT00390000000539 #26	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a #28	ENSGT01050000244848.A.a.g.b #29	ENSGT00390000016794.b.eb.a #30	ENSGT00390000010256 #31	ENSGT00940000153648.a #32	ENSGT00530000065055	ENSGT01050000244890.a.b.a #33	ENSGT00940000158887 #34	ENSGT00940000154101.a #35
Guinea pig	MODERN SPECIES	153												PECR (ENSCPOG00000011717) #18	TMEM169 (ENSCPOG00000035972) #19	XRCC5 (ENSCPOG00000012213) #20	MARCHF4 (ENSCPOG00000030980) #21	SMARCAL1 (ENSCPOG00000012231) #22	RPL37A (ENSCPOG00000036967) #23	IGFBP2 (ENSCPOG00000019954) #24	IGFBP5 (ENSCPOG00000034237) #25	TNP1 (ENSCPOG00000015208) #26	TNS1 (ENSCPOG00000001411) #27	Cxcr2 (ENSCPOG00000001412) #28	Cxcr1 (ENSCPOG00000021600) #29	ARPC2 (ENSCPOG00000002124) #30	GPBAR1 (ENSCPOG00000002126) #31	AAMP (ENSCPOG00000002128) #32	TMBIM1 (ENSCPOG00000001247) #33	PNKD (ENSCPOG00000020589) #34	CATIP (ENSCPOG00000012485) #35	SLC11A1 (ENSCPOG00000012490) #36	CTDSP1 (ENSCPOG00000032880) #37
Hystricomorpha_b	ANCESTRAL SPECIES	28												ENSGT00940000156882 #18	ENSGT00390000015276 #19	ENSGT00940000153239.A #20	ENSGT00940000158179 #21	ENSGT00940000157608 #22	ENSGT00390000016988.a.b #23	ENSGT00940000158542 #24	ENSGT00940000155890 #25	ENSGT00390000000539 #26	ENSGT00940000155400.B #27	ENSGT00940000154044.a.b	ENSGT01050000244848.A.a.g.a #28	ENSGT01050000244848.A.a.g.b #29	ENSGT00390000016794.b.eb.a #30	ENSGT00390000010256 #31	ENSGT00940000153648.a #32	ENSGT00530000065055	ENSGT01050000244890.a.b.a #33	ENSGT00940000158887 #34	ENSGT00940000154101.a #35
Degu	MODERN SPECIES	176											PECR (ENSODEG00000012400) #18	TMEM169 (ENSODEG00000011953) #19	ENSODEG00000019908	XRCC5 (ENSODEG00000012872) #20	MARCHF4 (ENSODEG00000014790) #21	SMARCAL1 (ENSODEG00000012339) #22	ENSODEG00000012648 ##23	ENSODEG00000011005 #24	IGFBP5 (ENSODEG00000012717) #25	TNP1 (ENSODEG00000011561) #26	ENSODEG00000012277	ENSODEG00000011389	TNS1 (ENSODEG00000011217) #27	RUFY4 (ENSODEG00000010955)	ENSODEG00000020035	ENSODEG00000016103 #30	GPBAR1 (ENSODEG00000020087) #31	AAMP (ENSODEG00000011651) #32	ENSODEG00000011159	TMBIM1 (ENSODEG00000011332) #33	PPP1R3A (ENSODEG00000013488)
Long-tailed chinchilla	MODERN SPECIES	160												PECR (ENSCLAG00000013472) #18	TMEM169 (ENSCLAG00000012542) #19	XRCC5 (ENSCLAG00000011846) #20	MARCHF4 (ENSCLAG00000009222) #21	SMARCAL1 (ENSCLAG00000011513) #22	RPL37A (ENSCLAG00000015640) #23	IGFBP2 (ENSCLAG00000017353) #24	IGFBP5 (ENSCLAG00000017354) #25	TNP1 (ENSCLAG00000009510) #26	TNS1 (ENSCLAG00000015284) #27	RUFY4 (ENSCLAG00000009144)	CXCR2 (ENSCLAG00000017805) #28	CXCR1 (ENSCLAG00000018091) #29	ARPC2 (ENSCLAG00000008305) #30	GPBAR1 (ENSCLAG00000008408) #31	AAMP (ENSCLAG00000009759) #32	TMBIM1 (ENSCLAG00000016172) #33	PNKD (ENSCLAG00000012048) #34	CATIP (ENSCLAG00000013420) #35	SLC11A1 (ENSCLAG00000012795) #36
Naked mole-rat female	MODERN SPECIES	17	ABCA12 (ENSHGLG00000004765)	ENSHGLG00000004335	ENSHGLG00000004264	ATIC (ENSHGLG00000004192)	FN1 (ENSHGLG00000004089)	MREG (ENSHGLG00000040698)	ENSHGLG00000045074	ENSHGLG00000041086	ENSHGLG00000032001	ENSHGLG00000038070	TMEM169 (ENSHGLG00000043207) #19	ENSHGLG00000016206 #18	XRCC5 (ENSHGLG00000015924) #20	MARCHF4 (ENSHGLG00000016985) #21	ENSHGLG00000045115	SMARCAL1 (ENSHGLG00000019107) #22	ENSHGLG00000042129 ##23	IGFBP2 (ENSHGLG00000011284) #24	IGFBP5 (ENSHGLG00000034439) #25	ENSHGLG00000010535	ENSHGLG00000033025	ENSHGLG00000018046	ENSHGLG00000015000	ENSHGLG00000017607	ENSHGLG00000043952	TNS1 (ENSHGLG00000012009) #27	ENSHGLG00000008227	RUFY4 (ENSHGLG00000017563)	CXCR2 (ENSHGLG00000043141) #28	ENSHGLG00000041402	CXCR1 (ENSHGLG00000033529) #29