Mus_A	ANCESTRAL SPECIES	3	ENSGT00390000017974 #7	ENSGT00860000135887 #9	ENSGT00950000183031.A.a.a #8	ENSGT00940000163458 #11	ENSGT00390000005813 #12	ENSGT00950000183028.a.b #13	ENSGT00530000063402.a #14	ENSGT00940000156762 #15	ENSGT00940000157291 #16	ENSGT00570000079623 #17	ENSGT00390000015364.b #18	ENSGT00390000016054.b #19	ENSGT00940000160752 #20	ENSGT00390000011115 #21	ENSGT00390000008551	ENSGT00940000158871 #22	ENSGT00810000125524 #23	ENSGT00390000003012 #24	ENSGT00940000156553 #25	ENSGT00390000015257 #26	ENSGT00940000155107.a.a #27	ENSGT00940000159465 #28	ENSGT00940000158915 #29	ENSGT00390000001737 #30	ENSGT00390000004808 #31	ENSGT00510000048364 #32	ENSGT00950000182986.b #33	ENSGT00940000154096.b.b.b.b.a #34	ENSGT00940000160627 #35	ENSGT00950000183163.a.a.f #36	ENSGT00950000182941.a.a.b #37
Ryukyu mouse	MODERN SPECIES	13	MGP_CAROLIEiJ_G0026442 #7	Rragc (MGP_CAROLIEiJ_G0026443) #8	MGP_CAROLIEiJ_G0026444 #9	MGP_CAROLIEiJ_G0026445 #10	Pou3f1 (MGP_CAROLIEiJ_G0026446) #11	Utp11 (MGP_CAROLIEiJ_G0026447) #12	Fhl3 (MGP_CAROLIEiJ_G0026448) #13	Sf3a3 (MGP_CAROLIEiJ_G0026449) #14	Inpp5b (MGP_CAROLIEiJ_G0026450) #15	Mtf1 (MGP_CAROLIEiJ_G0026451) #16	1110065P20Rik (MGP_CAROLIEiJ_G0026452) #17	Yrdc (MGP_CAROLIEiJ_G0026453) #18	Maneal (MGP_CAROLIEiJ_G0026454) #19	Epha10 (MGP_CAROLIEiJ_G0026455) #20	Cdca8 (MGP_CAROLIEiJ_G0026456) #21	Rspo1 (MGP_CAROLIEiJ_G0026457) #22	Gnl2 (MGP_CAROLIEiJ_G0026458) #23	Dnali1 (MGP_CAROLIEiJ_G0026459) #24	Snip1 (MGP_CAROLIEiJ_G0026460) #25	Meaf6 (MGP_CAROLIEiJ_G0026461) #26	Zc3h12a (MGP_CAROLIEiJ_G0026462) #27	Grik3 (MGP_CAROLIEiJ_G0026463) #28	Csf3r (MGP_CAROLIEiJ_G0026464) #29	Mrps15 (MGP_CAROLIEiJ_G0026465) #30	Oscp1 (MGP_CAROLIEiJ_G0026466) #31	Lsm10 (MGP_CAROLIEiJ_G0026467) #32	Stk40 (MGP_CAROLIEiJ_G0026468) #33	Eva1b (MGP_CAROLIEiJ_G0026469) #34	Sh3d21 (MGP_CAROLIEiJ_G0026470) #35	MGP_CAROLIEiJ_G0026471 #36	Map7d1 (MGP_CAROLIEiJ_G0026472) #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00390000017974 #7	ENSGT00860000135887 #9	ENSGT00950000183031.A.a.a #8	ENSGT00940000163458 #11	ENSGT00390000005813 #12	ENSGT00950000183028.a.b #13	ENSGT00530000063402.a #14	ENSGT00940000156762 #15	ENSGT00940000157291 #16	ENSGT00570000079623 #17	ENSGT00390000015364.b #18	ENSGT00390000016054.b #19	ENSGT00940000160752 #20	ENSGT00390000011115 #21	ENSGT00390000008551	ENSGT00940000158871 #22	ENSGT00810000125524 #23	ENSGT00390000003012 #24	ENSGT00940000156553 #25	ENSGT00390000015257 #26	ENSGT00940000155107.a.a #27	ENSGT00940000159465 #28	ENSGT00940000158915 #29	ENSGT00390000001737 #30	ENSGT00390000004808 #31	ENSGT00510000048364 #32	ENSGT00950000182986.b #33	ENSGT00940000154096.b.b.b.b.a #34	ENSGT00940000160627 #35	ENSGT00950000183163.a.a.f #36	ENSGT00950000182941.a.a.b #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00390000017974 #7	ENSGT00860000135887 #9	ENSGT00950000183031.A.a.a #8	ENSGT00940000163458 #11	ENSGT00390000005813 #12	ENSGT00950000183028.a.b #13	ENSGT00530000063402.a #14	ENSGT00940000156762 #15	ENSGT00940000157291 #16	ENSGT00570000079623 #17	ENSGT00390000015364.b #18	ENSGT00390000016054.b #19	ENSGT00940000160752 #20	ENSGT00390000011115 #21	ENSGT00390000008551	ENSGT00940000158871 #22	ENSGT00810000125524 #23	ENSGT00390000003012 #24	ENSGT00940000156553 #25	ENSGT00390000015257 #26	ENSGT00940000155107.a.a #27	ENSGT00940000159465 #28	ENSGT00940000158915 #29	ENSGT00390000001737 #30	ENSGT00390000004808 #31	ENSGT00510000048364 #32	ENSGT00950000182986.b #33	ENSGT00940000154096.b.b.b.b.a #34	ENSGT00940000160627 #35	ENSGT00950000183163.a.a.f #36	ENSGT00950000182941.a.a.b #37
Steppe mouse	MODERN SPECIES	3362	ENSMSIG00000014896 #9	Rragc (ENSMSIG00000014907) #8	ENSMSIG00000014950	Pou3f1 (ENSMSIG00000014969) #11	Utp11 (ENSMSIG00000014973) #12	Fhl3 (ENSMSIG00000015008) #13	Sf3a3 (ENSMSIG00000015045) #14	Inpp5b (ENSMSIG00000015112) #15	Mtf1 (ENSMSIG00000015251) #16	1110065P20Rik (ENSMSIG00000015284) #17	Yrdc (ENSMSIG00000015341) #18	Maneal (ENSMSIG00000015357) #19	Epha10 (ENSMSIG00000015368) #20	Cdca8 (ENSMSIG00000015423) #21	9930104L06Rik (ENSMSIG00000015482)	Rspo1 (ENSMSIG00000015498) #22	Gnl2 (ENSMSIG00000015516) #23	ENSMSIG00000015561 #24	Snip1 (ENSMSIG00000015594) #25	Meaf6 (ENSMSIG00000015611) #26	Zc3h12a (ENSMSIG00000015699) #27	Grik3 (ENSMSIG00000015725) #28	Csf3r (ENSMSIG00000015810) #29	Mrps15 (ENSMSIG00000015874) #30	Oscp1 (ENSMSIG00000015894) #31	Lsm10 (ENSMSIG00000016001) #32	Stk40 (ENSMSIG00000016008) #33	Eva1b (ENSMSIG00000016045) #34	Sh3d21 (ENSMSIG00000016082) #35	Thrap3 (ENSMSIG00000016164) #36	Map7d1 (ENSMSIG00000016217) #37
spretus	MODERN SPECIES	13	MGP_SPRETEiJ_G0027421	Mycbp (MGP_SPRETEiJ_G0027422) #7	Rragc (MGP_SPRETEiJ_G0027423) #8	MGP_SPRETEiJ_G0027424 #9	Pou3f1 (MGP_SPRETEiJ_G0027425) #11	Utp11 (MGP_SPRETEiJ_G0027426) #12	Fhl3 (MGP_SPRETEiJ_G0027427) #13	Sf3a3 (MGP_SPRETEiJ_G0027428) #14	Inpp5b (MGP_SPRETEiJ_G0027429) #15	Mtf1 (MGP_SPRETEiJ_G0027430) #16	1110065P20Rik (MGP_SPRETEiJ_G0027431) #17	Yrdc (MGP_SPRETEiJ_G0027432) #18	Maneal (MGP_SPRETEiJ_G0027433) #19	Epha10 (MGP_SPRETEiJ_G0027434) #20	Cdca8 (MGP_SPRETEiJ_G0027435) #21	Rspo1 (MGP_SPRETEiJ_G0027436) #22	Gnl2 (MGP_SPRETEiJ_G0027437) #23	Dnali1 (MGP_SPRETEiJ_G0027438) #24	Snip1 (MGP_SPRETEiJ_G0027439) #25	Meaf6 (MGP_SPRETEiJ_G0027440) #26	Zc3h12a (MGP_SPRETEiJ_G0027441) #27	Grik3 (MGP_SPRETEiJ_G0027442) #28	Csf3r (MGP_SPRETEiJ_G0027443) #29	Mrps15 (MGP_SPRETEiJ_G0027444) #30	Oscp1 (MGP_SPRETEiJ_G0027445) #31	Lsm10 (MGP_SPRETEiJ_G0027446) #32	Stk40 (MGP_SPRETEiJ_G0027447) #33	Eva1b (MGP_SPRETEiJ_G0027448) #34	Sh3d21 (MGP_SPRETEiJ_G0027449) #35	Thrap3 (MGP_SPRETEiJ_G0027450) #36	Map7d1 (MGP_SPRETEiJ_G0027451) #37
Mouse	MODERN SPECIES	13	Rhbdl2 (ENSMUSG00000043333)	Mycbp (ENSMUSG00000028647) #7	Rragc (ENSMUSG00000028646) #8	Pou3f1 (ENSMUSG00000090125) #11	Utp11 (ENSMUSG00000028907) #12	Fhl3 (ENSMUSG00000032643) #13	Sf3a3 (ENSMUSG00000028902) #14	Inpp5b (ENSMUSG00000028894) #15	Mtf1 (ENSMUSG00000028890) #16	1110065P20Rik (ENSMUSG00000078570) #17	Yrdc (ENSMUSG00000028889) #18	Maneal (ENSMUSG00000042763) #19	Epha10 (ENSMUSG00000028876) #20	Cdca8 (ENSMUSG00000028873) #21	9930104L06Rik (ENSMUSG00000044730)	Rspo1 (ENSMUSG00000028871) #22	Gnl2 (ENSMUSG00000028869) #23	Dnali1 (ENSMUSG00000042707) #24	Snip1 (ENSMUSG00000050213) #25	Meaf6 (ENSMUSG00000028863) #26	Zc3h12a (ENSMUSG00000042677) #27	Grik3 (ENSMUSG00000001985) #28	Csf3r (ENSMUSG00000028859) #29	Mrps15 (ENSMUSG00000028861) #30	Oscp1 (ENSMUSG00000042616) #31	Lsm10 (ENSMUSG00000050188) #32	Stk40 (ENSMUSG00000042608) #33	Eva1b (ENSMUSG00000050212) #34	Sh3d21 (ENSMUSG00000073758) #35	Thrap3 (ENSMUSG00000043962) #36	Map7d1 (ENSMUSG00000028849) #37