Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00390000011598 #7	ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450.lc #12	ENSGT00530000063881.a.b #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034.fb #25	ENSGT00940000153587.b	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769 #31	ENSGT00450000040404.a #32	ENSGT00940000155503 #33	ENSGT00940000161091 #34	ENSGT00940000161227 #35	ENSGT00940000162143 #36	ENSGT00940000160469 #37
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00390000011598 #7	ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450.lc #12	ENSGT00530000063881.a.b #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034.fb #25	ENSGT00940000153587.b	ENSGT00950000182890.B.b.j #26	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769 #31	ENSGT00450000040404.a #32	ENSGT00940000155503 #33	ENSGT00940000161091 #34	ENSGT00940000161227 #35	ENSGT00940000162143 #36
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00390000011598 #7	ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450.lc #12	ENSGT00530000063881.a.b #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034.fb #25	ENSGT00940000153587.b	ENSGT00950000182890.B.b.j #26	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769 #31	ENSGT00450000040404.a #32	ENSGT00940000155503 #33	ENSGT00940000161091 #34	ENSGT00940000161227 #35	ENSGT00940000162143 #36
Long-tailed chinchilla	MODERN SPECIES	159	STPG1 (ENSCLAG00000010905) #7	GRHL3 (ENSCLAG00000011858) #8	IFNLR1 (ENSCLAG00000011350) #9	IL22RA1 (ENSCLAG00000014220) #10	MYOM3 (ENSCLAG00000014590) #11	ENSCLAG00000015555 #12	ENSCLAG00000014105 #13	CNR2 (ENSCLAG00000014048) #14	FUCA1 (ENSCLAG00000013057) #15	HMGCL (ENSCLAG00000013961) #16	GALE (ENSCLAG00000011611) #17	LYPLA2 (ENSCLAG00000010904) #18	PITHD1 (ENSCLAG00000010044) #19	ELOA (ENSCLAG00000009140) #20	Rpl11 (ENSCLAG00000012453) #21	ID3 (ENSCLAG00000011715) #22	E2F2 (ENSCLAG00000013943) #23	ASAP3 (ENSCLAG00000009066) #24	ENSCLAG00000013324 #25	ENSCLAG00000013386 #26	HNRNPR (ENSCLAG00000012738) #27	ENSCLAG00000012687 #28	LUZP1 (ENSCLAG00000008774) #29	KDM1A (ENSCLAG00000007181) #30	TEX46 (ENSCLAG00000014987) #31	LACTBL1 (ENSCLAG00000009588) #32	EPHB2 (ENSCLAG00000011252) #33	C1QB (ENSCLAG00000011016) #34	C1QC (ENSCLAG00000009600) #35	C1QA (ENSCLAG00000009255) #36	EPHA8 (ENSCLAG00000014518) #37
Degu	MODERN SPECIES	133	STPG1 (ENSODEG00000014432) #7	GRHL3 (ENSODEG00000014148) #8	IFNLR1 (ENSODEG00000014258) #9	IL22RA1 (ENSODEG00000015339) #10	MYOM3 (ENSODEG00000014259) #11	ENSODEG00000020207	CNR2 (ENSODEG00000014788) #14	FUCA1 (ENSODEG00000013698) #15	HMGCL (ENSODEG00000014361) #16	GALE (ENSODEG00000015082) #17	ENSODEG00000014635 #18	PITHD1 (ENSODEG00000015391) #19	ENSODEG00000014473 #20	ENSODEG00000014098	RPL11 (ENSODEG00000014876) #21	ID3 (ENSODEG00000014895) #22	E2F2 (ENSODEG00000014064) #23	ASAP3 (ENSODEG00000013894) #24	ENSODEG00000014378 #25	ZNF436 (ENSODEG00000014873)	ENSODEG00000015161	ENSODEG00000020184 #28	ENSODEG00000020101	LUZP1 (ENSODEG00000014336) #29	KDM1A (ENSODEG00000014755) #30	ENSODEG00000014466	ENSODEG00000014173 #31	LACTBL1 (ENSODEG00000014475) #32	EPHB2 (ENSODEG00000015223) #33	ENSODEG00000020286	C1QB (ENSODEG00000015143) #34
Guinea pig	MODERN SPECIES	25	STPG1 (ENSCPOG00000008857) #7	GRHL3 (ENSCPOG00000008841) #8	IFNLR1 (ENSCPOG00000034175) #9	IL22RA1 (ENSCPOG00000024764) #10	MYOM3 (ENSCPOG00000008018) #11	SRSF10 (ENSCPOG00000034102) #12	PNRC2 (ENSCPOG00000037509) #13	CNR2 (ENSCPOG00000003537) #14	FUCA1 (ENSCPOG00000003535) #15	HMGCL (ENSCPOG00000008645) #16	GALE (ENSCPOG00000031845) #17	LYPLA2 (ENSCPOG00000033750) #18	PITHD1 (ENSCPOG00000008637) #19	ELOA (ENSCPOG00000008632) #20	RPL11 (ENSCPOG00000008432) #21	ID3 (ENSCPOG00000038307) #22	E2F2 (ENSCPOG00000008746) #23	ASAP3 (ENSCPOG00000023338) #24	ENSCPOG00000000504 #25	ENSCPOG00000030412 #26	HNRNPR (ENSCPOG00000040556) #27	ENSCPOG00000032945 #28	LUZP1 (ENSCPOG00000010753) #29	KDM1A (ENSCPOG00000010744) #30	LACTBL1 (ENSCPOG00000022624) #32	EPHB2 (ENSCPOG00000010844) #33	C1QB (ENSCPOG00000008124) #34	C1QC (ENSCPOG00000031590) #35	C1QA (ENSCPOG00000030985) #36	EPHA8 (ENSCPOG00000021134) #37	ZBTB40 (ENSCPOG00000012844)
Naked mole-rat female	MODERN SPECIES	26	IFNLR1 (ENSHGLG00000048210) #9	IL22RA1 (ENSHGLG00000013047) #10	MYOM3 (ENSHGLG00000012080) #11	ENSHGLG00000033166	SRSF10 (ENSHGLG00000046721) #12	PNRC2 (ENSHGLG00000044854) #13	CNR2 (ENSHGLG00000042644) #14	FUCA1 (ENSHGLG00000011473) #15	HMGCL (ENSHGLG00000015186) #16	GALE (ENSHGLG00000014688) #17	LYPLA2 (ENSHGLG00000011699) #18	PITHD1 (ENSHGLG00000011193) #19	ELOA (ENSHGLG00000010726) #20	ENSHGLG00000048939	RPL11 (ENSHGLG00000046193) #21	ID3 (ENSHGLG00000015126) #22	E2F2 (ENSHGLG00000013011) #23	ASAP3 (ENSHGLG00000011692) #24	TCEA3 (ENSHGLG00000010028) #25	ZNF436 (ENSHGLG00000047527)	HNRNPR (ENSHGLG00000013025) #27	ENSHGLG00000035069	ENSHGLG00000049799 #28	LUZP1 (ENSHGLG00000009891) #29	ENSHGLG00000032038	KDM1A (ENSHGLG00000014570) #30	TEX46 (ENSHGLG00000047177) #31	LACTBL1 (ENSHGLG00000018161) #32	EPHB2 (ENSHGLG00000018029) #33	C1QB (ENSHGLG00000016977) #34	C1QC (ENSHGLG00000013065) #35