Rodentia_A	ANCESTRAL SPECIES		ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450 #12	ENSGT00530000063881.a.b #13	ENSGT00990000204354	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034 #25	ENSGT00940000153587.b	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769	ENSGT00450000040404.a #31	ENSGT00940000155503 #32	ENSGT00940000161091 #33	ENSGT00940000161227 #34	ENSGT00940000162143 #35	ENSGT00940000160469 #36
Hystricomorpha	ANCESTRAL SPECIES	4	ENSGT00390000011598 #7	ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450.lc #12	ENSGT00530000063881.a.b #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034.fb #25	ENSGT00940000153587.b	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769	ENSGT00450000040404.a #31	ENSGT00940000155503 #32	ENSGT00940000161091 #33	ENSGT00940000161227 #34	ENSGT00940000162143 #35	ENSGT00940000160469 #36
Hystricomorpha_a	ANCESTRAL SPECIES	1	ENSGT00390000011598 #7	ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450.lc #12	ENSGT00530000063881.a.b #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034.fb #25	ENSGT00940000153587.b	ENSGT00950000182890.B.b.j #26	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769	ENSGT00450000040404.a #31	ENSGT00940000155503 #32	ENSGT00940000161091 #33	ENSGT00940000161227 #34	ENSGT00940000162143 #35
Guinea pig	MODERN SPECIES	25	STPG1 (ENSCPOG00000008857) #7	GRHL3 (ENSCPOG00000008841) #8	IFNLR1 (ENSCPOG00000034175) #9	IL22RA1 (ENSCPOG00000024764) #10	MYOM3 (ENSCPOG00000008018) #11	SRSF10 (ENSCPOG00000034102) #12	PNRC2 (ENSCPOG00000037509) #13	CNR2 (ENSCPOG00000003537) #14	FUCA1 (ENSCPOG00000003535) #15	HMGCL (ENSCPOG00000008645) #16	GALE (ENSCPOG00000031845) #17	LYPLA2 (ENSCPOG00000033750) #18	PITHD1 (ENSCPOG00000008637) #19	ELOA (ENSCPOG00000008632) #20	RPL11 (ENSCPOG00000008432) #21	ID3 (ENSCPOG00000038307) #22	E2F2 (ENSCPOG00000008746) #23	ASAP3 (ENSCPOG00000023338) #24	ENSCPOG00000000504 #25	ENSCPOG00000030412 #26	HNRNPR (ENSCPOG00000040556) #27	ENSCPOG00000032945 #28	LUZP1 (ENSCPOG00000010753) #29	KDM1A (ENSCPOG00000010744) #30	LACTBL1 (ENSCPOG00000022624) #31	EPHB2 (ENSCPOG00000010844) #32	C1QB (ENSCPOG00000008124) #33	C1QC (ENSCPOG00000031590) #34	C1QA (ENSCPOG00000030985) #35	EPHA8 (ENSCPOG00000021134) #36	ZBTB40 (ENSCPOG00000012844) #37
Hystricomorpha_b	ANCESTRAL SPECIES	7	ENSGT00390000011598 #7	ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450.lc #12	ENSGT00530000063881.a.b #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034.fb #25	ENSGT00940000153587.b	ENSGT00950000182890.B.b.j #26	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769	ENSGT00450000040404.a #31	ENSGT00940000155503 #32	ENSGT00940000161091 #33	ENSGT00940000161227 #34	ENSGT00940000162143 #35
Long-tailed chinchilla	MODERN SPECIES	159	STPG1 (ENSCLAG00000010905) #7	GRHL3 (ENSCLAG00000011858) #8	IFNLR1 (ENSCLAG00000011350) #9	IL22RA1 (ENSCLAG00000014220) #10	MYOM3 (ENSCLAG00000014590) #11	ENSCLAG00000015555 #12	ENSCLAG00000014105 #13	CNR2 (ENSCLAG00000014048) #14	FUCA1 (ENSCLAG00000013057) #15	HMGCL (ENSCLAG00000013961) #16	GALE (ENSCLAG00000011611) #17	LYPLA2 (ENSCLAG00000010904) #18	PITHD1 (ENSCLAG00000010044) #19	ELOA (ENSCLAG00000009140) #20	Rpl11 (ENSCLAG00000012453) #21	ID3 (ENSCLAG00000011715) #22	E2F2 (ENSCLAG00000013943) #23	ASAP3 (ENSCLAG00000009066) #24	ENSCLAG00000013324 #25	ENSCLAG00000013386 #26	HNRNPR (ENSCLAG00000012738) #27	ENSCLAG00000012687 #28	LUZP1 (ENSCLAG00000008774) #29	KDM1A (ENSCLAG00000007181) #30	TEX46 (ENSCLAG00000014987)	LACTBL1 (ENSCLAG00000009588) #31	EPHB2 (ENSCLAG00000011252) #32	C1QB (ENSCLAG00000011016) #33	C1QC (ENSCLAG00000009600) #34	C1QA (ENSCLAG00000009255) #35	EPHA8 (ENSCLAG00000014518) #36
Degu	MODERN SPECIES	133	STPG1 (ENSODEG00000014432) #7	GRHL3 (ENSODEG00000014148) #8	IFNLR1 (ENSODEG00000014258) #9	IL22RA1 (ENSODEG00000015339) #10	MYOM3 (ENSODEG00000014259) #11	ENSODEG00000020207	CNR2 (ENSODEG00000014788) #14	FUCA1 (ENSODEG00000013698) #15	HMGCL (ENSODEG00000014361) #16	GALE (ENSODEG00000015082) #17	ENSODEG00000014635 #18	PITHD1 (ENSODEG00000015391) #19	ENSODEG00000014473 #20	ENSODEG00000014098	RPL11 (ENSODEG00000014876) #21	ID3 (ENSODEG00000014895) #22	E2F2 (ENSODEG00000014064) #23	ASAP3 (ENSODEG00000013894) #24	ENSODEG00000014378 #25	ZNF436 (ENSODEG00000014873)	ENSODEG00000015161	ENSODEG00000020184 #28	ENSODEG00000020101	LUZP1 (ENSODEG00000014336) #29	KDM1A (ENSODEG00000014755) #30	ENSODEG00000014466	ENSODEG00000014173	LACTBL1 (ENSODEG00000014475) #31	EPHB2 (ENSODEG00000015223) #32	ENSODEG00000020286	C1QB (ENSODEG00000015143) #33
Naked mole-rat female	MODERN SPECIES	26	IFNLR1 (ENSHGLG00000048210) #9	IL22RA1 (ENSHGLG00000013047) #10	MYOM3 (ENSHGLG00000012080) #11	ENSHGLG00000033166	SRSF10 (ENSHGLG00000046721) #12	PNRC2 (ENSHGLG00000044854) #13	CNR2 (ENSHGLG00000042644) #14	FUCA1 (ENSHGLG00000011473) #15	HMGCL (ENSHGLG00000015186) #16	GALE (ENSHGLG00000014688) #17	LYPLA2 (ENSHGLG00000011699) #18	PITHD1 (ENSHGLG00000011193) #19	ELOA (ENSHGLG00000010726) #20	ENSHGLG00000048939	RPL11 (ENSHGLG00000046193) #21	ID3 (ENSHGLG00000015126) #22	E2F2 (ENSHGLG00000013011) #23	ASAP3 (ENSHGLG00000011692) #24	TCEA3 (ENSHGLG00000010028) #25	ZNF436 (ENSHGLG00000047527)	HNRNPR (ENSHGLG00000013025) #27	ENSHGLG00000035069	ENSHGLG00000049799 #28	LUZP1 (ENSHGLG00000009891) #29	ENSHGLG00000032038	KDM1A (ENSHGLG00000014570) #30	TEX46 (ENSHGLG00000047177)	LACTBL1 (ENSHGLG00000018161) #31	EPHB2 (ENSHGLG00000018029) #32	C1QB (ENSHGLG00000016977) #33	C1QC (ENSHGLG00000013065) #34
Sciuridae	ANCESTRAL SPECIES	3	ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450 #12	ENSGT00530000063881.a.b #13	ENSGT00990000204354	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034 #25	ENSGT00940000153587.b	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769	ENSGT00450000040404.a #31	ENSGT00940000155503 #32	ENSGT00940000161091 #33	ENSGT00940000161227 #34	ENSGT00940000162143 #35	ENSGT00940000160469 #36
Marmotini	ANCESTRAL SPECIES		ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450 #12	ENSGT00530000063881.a.b #13	ENSGT00990000204354	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034 #25	ENSGT00940000153587.b	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769	ENSGT00450000040404.a #31	ENSGT00940000155503 #32	ENSGT00940000161091 #33	ENSGT00940000161227 #34	ENSGT00940000162143 #35	ENSGT00940000160469 #36
Marmotini_b	ANCESTRAL SPECIES		ENSGT00940000157970 #8	ENSGT00510000048978 #9	ENSGT00940000161366 #10	ENSGT00940000158669 #11	ENSGT00940000154450 #12	ENSGT00530000063881.a.b #13	ENSGT00990000204354	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484 #16	ENSGT00940000158000 #17	ENSGT00940000156197 #18	ENSGT00490000043398 #19	ENSGT00390000002428.a.g.a #20	ENSGT00910000144211.n.a.fb #21	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034 #25	ENSGT00940000153587.b	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00950000182852.A.b #29	ENSGT00940000157193 #30	ENSGT00390000007769	ENSGT00450000040404.a #31	ENSGT00940000155503 #32	ENSGT00940000161091 #33	ENSGT00940000161227 #34	ENSGT00940000162143 #35	ENSGT00940000160469 #36
Squirrel	MODERN SPECIES	74	STPG1 (ENSSTOG00000020596) #7	GRHL3 (ENSSTOG00000023529) #8	IFNLR1 (ENSSTOG00000022523) #9	IL22RA1 (ENSSTOG00000001510) #10	MYOM3 (ENSSTOG00000000934) #11	SRSF10 (ENSSTOG00000000956) #12	PNRC2 (ENSSTOG00000000953) #13	CNR2 (ENSSTOG00000011946) #14	FUCA1 (ENSSTOG00000011938) #15	HMGCL (ENSSTOG00000011933) #16	GALE (ENSSTOG00000011927) #17	LYPLA2 (ENSSTOG00000011918) #18	PITHD1 (ENSSTOG00000028000) #19	ELOA (ENSSTOG00000023412) #20	ENSSTOG00000011904	ID3 (ENSSTOG00000009584) #22	E2F2 (ENSSTOG00000009576) #23	ASAP3 (ENSSTOG00000009547) #24	TCEA3 (ENSSTOG00000021068) #25	ZNF436 (ENSSTOG00000001212)	HNRNPR (ENSSTOG00000021981) #27	ENSSTOG00000006804 #28	LUZP1 (ENSSTOG00000022904) #29	KDM1A (ENSSTOG00000002451) #30	LACTBL1 (ENSSTOG00000023903) #31	EPHB2 (ENSSTOG00000015377) #32	C1QB (ENSSTOG00000023153) #33	C1QC (ENSSTOG00000030103) #34	C1QA (ENSSTOG00000034210) #35	EPHA8 (ENSSTOG00000008929) #36	ZBTB40 (ENSSTOG00000009598) #37
Arctic ground squirrel	MODERN SPECIES	294	GRHL3 (ENSUPAG00010021122) #8	IFNLR1 (ENSUPAG00010021115) #9	IL22RA1 (ENSUPAG00010021107) #10	MYOM3 (ENSUPAG00010021069) #11	SRSF10 (ENSUPAG00010021046) #12	PNRC2 (ENSUPAG00010021043) #13	ENSUPAG00010021041	CNR2 (ENSUPAG00010021037) #14	FUCA1 (ENSUPAG00010021031) #15	HMGCL (ENSUPAG00010021020) #16	GALE (ENSUPAG00010021009) #17	LYPLA2 (ENSUPAG00010021003) #18	PITHD1 (ENSUPAG00010020991) #19	ELOA (ENSUPAG00010020981) #20	RPL11 (ENSUPAG00010020974) #21	ID3 (ENSUPAG00010020971) #22	E2F2 (ENSUPAG00010020963) #23	ASAP3 (ENSUPAG00010020955) #24	TCEA3 (ENSUPAG00010020944) #25	ZNF436 (ENSUPAG00010020939)	HNRNPR (ENSUPAG00010020927) #27	ENSUPAG00010020922 #28	LUZP1 (ENSUPAG00010020907) #29	KDM1A (ENSUPAG00010020880) #30	TEX46 (ENSUPAG00010020875)	LACTBL1 (ENSUPAG00010020863) #31	EPHB2 (ENSUPAG00010020830) #32	C1QB (ENSUPAG00010020826) #33	C1QC (ENSUPAG00010020824) #34	C1QA (ENSUPAG00010020820) #35	EPHA8 (ENSUPAG00010020808) #36
Alpin marmot	MODERN SPECIES	15	GRHL3 (ENSMMMG00000018480) #8	IFNLR1 (ENSMMMG00000018513) #9	IL22RA1 (ENSMMMG00000018545) #10	MYOM3 (ENSMMMG00000018557) #11	SRSF10 (ENSMMMG00000018592) #12	PNRC2 (ENSMMMG00000018622) #13	ENSMMMG00000018624	CNR2 (ENSMMMG00000018629) #14	FUCA1 (ENSMMMG00000018637) #15	HMGCL (ENSMMMG00000018659) #16	GALE (ENSMMMG00000018757) #17	LYPLA2 (ENSMMMG00000018761) #18	PITHD1 (ENSMMMG00000018765) #19	ELOA (ENSMMMG00000018774) #20	RPL11 (ENSMMMG00000018781) #21	ID3 (ENSMMMG00000018787) #22	E2F2 (ENSMMMG00000018795) #23	ASAP3 (ENSMMMG00000018861) #24	TCEA3 (ENSMMMG00000018885) #25	ZNF436 (ENSMMMG00000018891)	HNRNPR (ENSMMMG00000018898) #27	ENSMMMG00000018946 #28	LUZP1 (ENSMMMG00000018950) #29	KDM1A (ENSMMMG00000018957) #30	TEX46 (ENSMMMG00000018999)	EPHB2 (ENSMMMG00000019007) #32	C1QB (ENSMMMG00000019024) #33	C1QC (ENSMMMG00000019028) #34	C1QA (ENSMMMG00000019033) #35	ZBTB40 (ENSMMMG00000019071) #37	WNT4 (ENSMMMG00000019083)
Eurasian red squirrel	MODERN SPECIES		IFNLR1 (ENSSVLG00005000894) #9	IL22RA1 (ENSSVLG00005000877) #10	MYOM3 (ENSSVLG00005000787) #11	ENSSVLG00005000730	SRSF10 (ENSSVLG00005000670) #12	PNRC2 (ENSSVLG00005000620) #13	ENSSVLG00005000604	CNR2 (ENSSVLG00005000589) #14	FUCA1 (ENSSVLG00005000561) #15	HMGCL (ENSSVLG00005000529) #16	GALE (ENSSVLG00005000509) #17	LYPLA2 (ENSSVLG00005000457) #18	PITHD1 (ENSSVLG00005000416) #19	ELOA (ENSSVLG00005000381) #20	RPL11 (ENSSVLG00005000344) #21	ID3 (ENSSVLG00005000320) #22	E2F2 (ENSSVLG00005000151) #23	ENSSVLG00005000104	ASAP3 (ENSSVLG00005006849) #24	TCEA3 (ENSSVLG00005006814) #25	ZNF436 (ENSSVLG00005006783)	HNRNPR (ENSSVLG00005006684) #27	HTR1D (ENSSVLG00005006648)	LUZP1 (ENSSVLG00005006625) #29	KDM1A (ENSSVLG00005006528) #30	TEX46 (ENSSVLG00005006473)	LACTBL1 (ENSSVLG00005006410) #31	EPHB2 (ENSSVLG00005006141) #32	C1QB (ENSSVLG00005006095) #33	C1QC (ENSSVLG00005006074) #34	C1QA (ENSSVLG00005006048) #35