Mus_A	ANCESTRAL SPECIES	3	ENSGT00940000157970	ENSGT00510000048978 #7	ENSGT00940000161366 #8	ENSGT00940000158669 #10	ENSGT00940000154450 #11	ENSGT00530000063881.a.b #12	ENSGT00990000204354 #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484	ENSGT00940000158000 #16	ENSGT00940000156197 #17	ENSGT00490000043398 #18	ENSGT00390000002428.a.g.a #19	ENSGT00910000144211.n.a.fb #20	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034 #25	ENSGT00940000153587.b #26	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00860000135869 #29	ENSGT00950000182852.A.b #30	ENSGT00940000157193 #31	ENSGT00390000007769 #32	ENSGT00450000040404.a #33	ENSGT00940000155503 #34	ENSGT00940000161091 #35	ENSGT00940000161227 #36	ENSGT00940000162143 #37
Mus_B	ANCESTRAL SPECIES	5	ENSGT00940000157970	ENSGT00510000048978 #7	ENSGT00940000161366 #8	ENSGT00940000158669 #10	ENSGT00940000154450 #11	ENSGT00530000063881.a.b #12	ENSGT00990000204354 #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484	ENSGT00940000158000 #16	ENSGT00940000156197 #17	ENSGT00490000043398 #18	ENSGT00390000002428.a.g.a #19	ENSGT00910000144211.n.a.fb #20	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034 #25	ENSGT00940000153587.b #26	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00860000135869 #29	ENSGT00950000182852.A.b #30	ENSGT00940000157193 #31	ENSGT00390000007769 #32	ENSGT00450000040404.a #33	ENSGT00940000155503 #34	ENSGT00940000161091 #35	ENSGT00940000161227 #36	ENSGT00940000162143 #37
Mus_C	ANCESTRAL SPECIES	2	ENSGT00940000157970	ENSGT00510000048978 #7	ENSGT00940000161366 #8	ENSGT00940000158669 #10	ENSGT00940000154450 #11	ENSGT00530000063881.a.b #12	ENSGT00990000204354 #13	ENSGT01060000248564.a.b #14	ENSGT00440000035378.c #15	ENSGT00940000158484	ENSGT00940000158000 #16	ENSGT00940000156197 #17	ENSGT00490000043398 #18	ENSGT00390000002428.a.g.a #19	ENSGT00910000144211.n.a.fb #20	ENSGT00940000160504 #22	ENSGT00940000160992 #23	ENSGT00940000161085 #24	ENSGT00940000157034 #25	ENSGT00940000153587.b #26	ENSGT00940000153511.a #27	ENSGT01010000222287.B.b.a.b.a #28	ENSGT00860000135869 #29	ENSGT00950000182852.A.b #30	ENSGT00940000157193 #31	ENSGT00390000007769 #32	ENSGT00450000040404.a #33	ENSGT00940000155503 #34	ENSGT00940000161091 #35	ENSGT00940000161227 #36	ENSGT00940000162143 #37
Steppe mouse	MODERN SPECIES	3343	Ifnlr1 (ENSMSIG00000003842) #7	Il22ra1 (ENSMSIG00000003862) #8	ENSMSIG00000003908 #9	Myom3 (ENSMSIG00000003941) #10	Srsf10 (ENSMSIG00000004072) #11	Pnrc2 (ENSMSIG00000004244) #12	ENSMSIG00000004251 #13	Cnr2 (ENSMSIG00000004270) #14	ENSMSIG00000004292 #15	Gale (ENSMSIG00000004402) #16	ENSMSIG00000004429 #17	Pithd1 (ENSMSIG00000004467) #18	ENSMSIG00000004478 #19	ENSMSIG00000004514 #20	ENSMSIG00000004560 #21	Id3 (ENSMSIG00000004572) #22	E2f2 (ENSMSIG00000004591) #23	Asap3 (ENSMSIG00000004611) #24	Tcea3 (ENSMSIG00000004673) #25	Zfp46 (ENSMSIG00000004704) #26	Hnrnpr (ENSMSIG00000004715) #27	Htr1d (ENSMSIG00000004838) #28	ENSMSIG00000004861 #29	Luzp1 (ENSMSIG00000004872) #30	Kdm1a (ENSMSIG00000004881) #31	Tex46 (ENSMSIG00000004994) #32	Lactbl1 (ENSMSIG00000005002) #33	Ephb2 (ENSMSIG00000005017) #34	C1qb (ENSMSIG00000005145) #35	C1qc (ENSMSIG00000005167) #36	C1qa (ENSMSIG00000005180) #37
spretus	MODERN SPECIES	13	Stpg1 (MGP_SPRETEiJ_G0027620)	Grhl3 (MGP_SPRETEiJ_G0027621)	Ifnlr1 (MGP_SPRETEiJ_G0027622) #7	Il22ra1 (MGP_SPRETEiJ_G0027623) #8	Myom3 (MGP_SPRETEiJ_G0027624) #10	MGP_SPRETEiJ_G0027625 #11	Pnrc2 (MGP_SPRETEiJ_G0027626) #12	Cnr2 (MGP_SPRETEiJ_G0027627) #14	Fuca1 (MGP_SPRETEiJ_G0027628) #15	Hmgcl (MGP_SPRETEiJ_G0027629)	Gale (MGP_SPRETEiJ_G0027630) #16	Lypla2 (MGP_SPRETEiJ_G0027631) #17	Pithd1 (MGP_SPRETEiJ_G0027632) #18	Eloa (MGP_SPRETEiJ_G0027633) #19	Rpl11 (MGP_SPRETEiJ_G0027634) #20	Id3 (MGP_SPRETEiJ_G0027635) #22	E2f2 (MGP_SPRETEiJ_G0027636) #23	Asap3 (MGP_SPRETEiJ_G0027637) #24	Tcea3 (MGP_SPRETEiJ_G0027638) #25	Zfp46 (MGP_SPRETEiJ_G0027639) #26	Htr1d (MGP_SPRETEiJ_G0027641) #28	MGP_SPRETEiJ_G0027642 #29	Luzp1 (MGP_SPRETEiJ_G0027643) #30	Kdm1a (MGP_SPRETEiJ_G0027644) #31	Tex46 (MGP_SPRETEiJ_G0027645) #32	Lactbl1 (MGP_SPRETEiJ_G0027646) #33	Ephb2 (MGP_SPRETEiJ_G0027647) #34	C1qb (MGP_SPRETEiJ_G0027648) #35	C1qc (MGP_SPRETEiJ_G0027649) #36	C1qa (MGP_SPRETEiJ_G0027650) #37	Epha8 (MGP_SPRETEiJ_G0027651)
Mouse	MODERN SPECIES	13	Stpg1 (ENSMUSG00000028801)	Grhl3 (ENSMUSG00000037188)	Ifnlr1 (ENSMUSG00000062157) #7	Il22ra1 (ENSMUSG00000037157) #8	Myom3 (ENSMUSG00000037139) #10	Srsf10 (ENSMUSG00000028676) #11	Pnrc2 (ENSMUSG00000028675) #12	Cnr2 (ENSMUSG00000062585) #14	Fuca1 (ENSMUSG00000028673) #15	Hmgcl (ENSMUSG00000028672)	Gale (ENSMUSG00000028671) #16	Lypla2 (ENSMUSG00000028670) #17	Pithd1 (ENSMUSG00000028669) #18	Eloa (ENSMUSG00000028668) #19	Rpl11 (ENSMUSG00000059291) #20	Id3 (ENSMUSG00000007872) #22	E2f2 (ENSMUSG00000018983) #23	Asap3 (ENSMUSG00000036995) #24	Tcea3 (ENSMUSG00000001604) #25	Zfp46 (ENSMUSG00000051351) #26	Hnrnpr (ENSMUSG00000066037) #27	Htr1d (ENSMUSG00000070687) #28	Luzp1 (ENSMUSG00000001089) #30	Kdm1a (ENSMUSG00000036940) #31	Tex46 (ENSMUSG00000036921) #32	Lactbl1 (ENSMUSG00000070683) #33	Ephb2 (ENSMUSG00000028664) #34	C1qb (ENSMUSG00000036905) #35	C1qc (ENSMUSG00000036896) #36	C1qa (ENSMUSG00000036887) #37	Epha8 (ENSMUSG00000028661)
Ryukyu mouse	MODERN SPECIES	13	Stpg1 (MGP_CAROLIEiJ_G0026640)	Grhl3 (MGP_CAROLIEiJ_G0026641)	Ifnlr1 (MGP_CAROLIEiJ_G0026642) #7	Il22ra1 (MGP_CAROLIEiJ_G0026643) #8	Myom3 (MGP_CAROLIEiJ_G0026644) #10	Srsf10 (MGP_CAROLIEiJ_G0026645) #11	Pnrc2 (MGP_CAROLIEiJ_G0026646) #12	Cnr2 (MGP_CAROLIEiJ_G0026647) #14	Fuca1 (MGP_CAROLIEiJ_G0026648) #15	Hmgcl (MGP_CAROLIEiJ_G0026649)	Gale (MGP_CAROLIEiJ_G0026650) #16	Lypla2 (MGP_CAROLIEiJ_G0026651) #17	Pithd1 (MGP_CAROLIEiJ_G0026652) #18	Eloa (MGP_CAROLIEiJ_G0026653) #19	MGP_CAROLIEiJ_G0026654 ##20	Id3 (MGP_CAROLIEiJ_G0026655) #22	E2f2 (MGP_CAROLIEiJ_G0026656) #23	Asap3 (MGP_CAROLIEiJ_G0026657) #24	Tcea3 (MGP_CAROLIEiJ_G0026658) #25	MGP_CAROLIEiJ_G0026659 ##26	Hnrnpr (MGP_CAROLIEiJ_G0026660) #27	Htr1d (MGP_CAROLIEiJ_G0026661) #28	MGP_CAROLIEiJ_G0026662 #29	Luzp1 (MGP_CAROLIEiJ_G0026663) #30	Kdm1a (MGP_CAROLIEiJ_G0026664) #31	Tex46 (MGP_CAROLIEiJ_G0026665) #32	Lactbl1 (MGP_CAROLIEiJ_G0026666) #33	Ephb2 (MGP_CAROLIEiJ_G0026667) #34	C1qb (MGP_CAROLIEiJ_G0026668) #35	C1qc (MGP_CAROLIEiJ_G0026669) #36	C1qa (MGP_CAROLIEiJ_G0026670) #37