Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00390000013916 #8	ENSGT00940000155041 #9	ENSGT00500000044939 #10	ENSGT00940000156089 #11	ENSGT00940000156552 #12	ENSGT00530000063873.A #13	ENSGT00530000063873.B #14	ENSGT00390000000801 #15	ENSGT00950000183214.a.b.a.b #17	ENSGT00940000155270 #18	ENSGT00940000157974 #19	ENSGT00940000153514.b #20	ENSGT00950000183014.f.a.h #21	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781 #22	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b #23	ENSGT01030000234607.A.b #24	ENSGT00940000161508	ENSGT00940000155235 #25	ENSGT00940000155408 #26	ENSGT00940000157249 #27	ENSGT00940000154453.b.a.b ##28	ENSGT00940000154453.b.b #28	ENSGT00940000162639 #29	ENSGT00940000159743 #30	ENSGT00940000158720.c.b	ENSGT00940000163272.a.b	ENSGT00940000159232.h.b #31
Hystricomorpha	ANCESTRAL SPECIES	28	ENSGT00390000013916 #8	ENSGT00940000155041 #9	ENSGT00500000044939 #10	ENSGT00940000156089 #11	ENSGT00940000156552 #12	ENSGT00530000063873.A #13	ENSGT00530000063873.B #14	ENSGT00390000000801 #15	ENSGT00950000183214.a.b.a.b #17	ENSGT00940000155270 #18	ENSGT00940000157974 #19	ENSGT00940000153514.b #20	ENSGT00950000183014.f.a.h #21	ENSGT00940000160642	ENSGT00440000037606.b	ENSGT00940000158781 #22	ENSGT00390000015769.B	ENSGT00940000162403	ENSGT00530000063410.b #23	ENSGT01030000234607.A.b #24	ENSGT00940000155235 #25	ENSGT00940000155408 #26	ENSGT00940000157249 #27	ENSGT00940000154453.b.b #28	ENSGT00940000162639 #29	ENSGT00940000159743 #30	ENSGT00940000158720.c.b	ENSGT00940000159232.h.b #31	ENSGT00940000156190.g #32	ENSGT00940000156190.h #33	ENSGT00390000004840 #34
Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00930000150950.b #7	ENSGT00390000013916 #8	ENSGT00940000155041 #9	ENSGT00500000044939 #10	ENSGT00940000156089 #11	ENSGT00940000156552 #12	ENSGT00530000063873.A #13	ENSGT00530000063873.B #14	ENSGT00390000000801 #15	ENSGT00950000183214.a.b.a.b #17	ENSGT00940000155270 #18	ENSGT00940000157974 #19	ENSGT00940000153514.b #20	ENSGT00950000183014.f.a.h #21	ENSGT00940000160642	ENSGT00940000158781 #22	ENSGT00940000162403	ENSGT00530000063410.b #23	ENSGT01030000234607.A.b #24	ENSGT00940000155235 #25	ENSGT00940000155408 #26	ENSGT00940000157249 #27	ENSGT00940000154453.b.b #28	ENSGT00940000162639 #29	ENSGT00940000159743 #30	ENSGT00940000159232.h.b #31	ENSGT00940000156190.g #32	ENSGT00940000156190.h #33	ENSGT00390000004840 #34	ENSGT00390000012547.b.d #35	ENSGT00940000156307.b #36
Guinea pig	MODERN SPECIES	13	WDR12 (ENSCPOG00000008824) #7	CARF (ENSCPOG00000008827) #8	NBEAL1 (ENSCPOG00000008009) #9	CYP20A1 (ENSCPOG00000009758) #10	ABI2 (ENSCPOG00000007562) #11	RAPH1 (ENSCPOG00000020239) #12	CD28 (ENSCPOG00000035938) #13	CTLA4 (ENSCPOG00000019534) #14	ICOS (ENSCPOG00000030931) #15	ENSCPOG00000030358 #16	PARD3B (ENSCPOG00000004380) #17	NRP2 (ENSCPOG00000004390) #18	ENSCPOG00000010964 #19	NDUFS1 (ENSCPOG00000005555) #20	EEF1B2 (ENSCPOG00000014496) #21	ADAM23 (ENSCPOG00000005871) #22	MDH1B (ENSCPOG00000005608) #23	FASTKD2 (ENSCPOG00000005624) #24	KLF7 (ENSCPOG00000009080) #25	CREB1 (ENSCPOG00000010778) #26	METTL21A (ENSCPOG00000034803) #27	ENSCPOG00000035156 #28	FZD5 (ENSCPOG00000038146) #29	PLEKHM3 (ENSCPOG00000004119) #30	CRYGC (ENSCPOG00000000186) #31	ENSCPOG00000022025 #32	CRYGA (ENSCPOG00000015047) #33	C2orf80 (ENSCPOG00000015050) #34	IDH1 (ENSCPOG00000013587) #35	PIKFYVE (ENSCPOG00000003863) #36	PTH2R (ENSCPOG00000027198) #37