Mus_A	ANCESTRAL SPECIES	12	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.a	ENSGT00940000160425 #7	ENSGT00940000155079.b #9	ENSGT00940000156743 #10	ENSGT00940000155487 #11	ENSGT00940000157767 #12	ENSGT00940000156894 #14	ENSGT00940000155454 #16	ENSGT00860000135986 #17	ENSGT00940000155219 #18	ENSGT00480000042679.b.b #19	ENSGT00390000013700 #20	ENSGT00940000157039.b #21	ENSGT00390000013956 #22	ENSGT00940000155175.B ##23	ENSGT00940000155175.A #23	ENSGT00940000156877 #24	ENSGT00950000183174.B.b #25	ENSGT00390000011709 #26	ENSGT00940000157896.f #27	ENSGT00390000006601 #28	ENSGT00940000158106 #29	ENSGT00940000153313.B #30	ENSGT01070000253816.a.a.b #31	ENSGT00940000154512.a #32	ENSGT00390000013820 #33	ENSGT00940000159907 #34	ENSGT00860000135855 #35	ENSGT00390000006788.a.b #36
Mus_B	ANCESTRAL SPECIES	11	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.a	ENSGT00940000160425 #7	ENSGT00940000155079.b #9	ENSGT00940000156743 #10	ENSGT00940000155487 #11	ENSGT00940000157767 #12	ENSGT00940000156894 #14	ENSGT00940000155454 #16	ENSGT00860000135986 #17	ENSGT00940000155219 #18	ENSGT00480000042679.b.b #19	ENSGT00390000013700 #20	ENSGT00940000157039.b #21	ENSGT00390000013956 #22	ENSGT00940000155175.B ##23	ENSGT00940000155175.A #23	ENSGT00940000156877 #24	ENSGT00950000183174.B.b #25	ENSGT00390000011709 #26	ENSGT00940000157896.f #27	ENSGT00390000006601 #28	ENSGT00940000158106 #29	ENSGT00940000153313.B #30	ENSGT01070000253816.a.a.b #31	ENSGT00940000154512.a #32	ENSGT00390000013820 #33	ENSGT00940000159907 #34	ENSGT00860000135855 #35	ENSGT00390000006788.a.b #36
Mus_C	ANCESTRAL SPECIES	20	ENSGT00530000063106.C	ENSGT00390000013790	ENSGT00390000005954	ENSGT00390000001134.a.a	ENSGT00940000160425 #7	ENSGT00940000155079.b #9	ENSGT00940000156743 #10	ENSGT00940000155487 #11	ENSGT00940000157767 #12	ENSGT00940000155454 #16	ENSGT00860000135986 #17	ENSGT00940000155219 #18	ENSGT00480000042679.b.b #19	ENSGT00390000013700 #20	ENSGT00940000157039.b #21	ENSGT00390000013956 #22	ENSGT00940000155175.B ##23	ENSGT00940000155175.A #23	ENSGT00940000156877 #24	ENSGT00950000183174.B.b #25	ENSGT00390000011709 #26	ENSGT00940000157896.f #27	ENSGT00390000006601 #28	ENSGT00940000158106 #29	ENSGT00940000153313.B #30	ENSGT01070000253816.a.a.b #31	ENSGT00940000154512.a #32	ENSGT00390000013820 #33	ENSGT00940000159907 #34	ENSGT00860000135855 #35	ENSGT00390000006788.a.b #36
spretus	MODERN SPECIES	5	Klhl1 (MGP_SPRETEiJ_G0020452) #7	Spertl (MGP_SPRETEiJ_G0020451) #8	Pcdh9 (MGP_SPRETEiJ_G0020450) #9	Pcdh20 (MGP_SPRETEiJ_G0020449) #10	Tdrd3 (MGP_SPRETEiJ_G0020448) #11	Diaph3 (MGP_SPRETEiJ_G0020447) #12	MGP_SPRETEiJ_G0020446 #13	Pcdh17 (MGP_SPRETEiJ_G0020445) #14	MGP_SPRETEiJ_G0020444 #15	Olfm4 (MGP_SPRETEiJ_G0020443) #16	MGP_SPRETEiJ_G0020442 #17	Pcdh8 (MGP_SPRETEiJ_G0020441) #18	Cnmd (MGP_SPRETEiJ_G0020440) #19	Sugt1 (MGP_SPRETEiJ_G0020439) #20	Elf1 (MGP_SPRETEiJ_G0020438) #21	Wbp4 (MGP_SPRETEiJ_G0020437) #22	MGP_SPRETEiJ_G0020436 #23	Mtrf1 (MGP_SPRETEiJ_G0020435) #24	Naa16 (MGP_SPRETEiJ_G0020434) #25	Rgcc (MGP_SPRETEiJ_G0020433) #26	Zfp957 (MGP_SPRETEiJ_G0020432) #27	Vwa8 (MGP_SPRETEiJ_G0020431) #28	Dgkh (MGP_SPRETEiJ_G0020430) #29	Akap11 (MGP_SPRETEiJ_G0020429) #30	Tnfsf11 (MGP_SPRETEiJ_G0020428) #31	Fam216b (MGP_SPRETEiJ_G0020427) #32	Epsti1 (MGP_SPRETEiJ_G0020426) #33	Dnajc15 (MGP_SPRETEiJ_G0020425) #34	MGP_SPRETEiJ_G0020424 #35	Enox1 (MGP_SPRETEiJ_G0020423) #36	Ccdc122 (MGP_SPRETEiJ_G0020422) #37
Steppe mouse	MODERN SPECIES	2976																Wbp4 (ENSMSIG00000004742) #22	Kbtbd6 (ENSMSIG00000004735) ##23	Kbtbd7 (ENSMSIG00000004721) #23	Mtrf1 (ENSMSIG00000004689) #24	Naa16 (ENSMSIG00000004556) #25	Rgcc (ENSMSIG00000004519) #26	ENSMSIG00000004513 #27	Vwa8 (ENSMSIG00000004400) #28	Dgkh (ENSMSIG00000004016) #29	Akap11 (ENSMSIG00000003844) #30	Tnfsf11 (ENSMSIG00000003809) #31	Fam216b (ENSMSIG00000003781) #32	Epsti1 (ENSMSIG00000003651) #33
Mouse	MODERN SPECIES	5	Bora (ENSMUSG00000022070)	Mzt1 (ENSMUSG00000033186)	Dach1 (ENSMUSG00000055639)	Klhl1 (ENSMUSG00000022076) #7	Spertl (ENSMUSG00000034689) #8	Pcdh9 (ENSMUSG00000055421) #9	Pcdh20 (ENSMUSG00000050505) #10	Tdrd3 (ENSMUSG00000022019) #11	Diaph3 (ENSMUSG00000022021) #12	Pcdh17 (ENSMUSG00000035566) #14	Olfm4 (ENSMUSG00000022026) #16	Pcdh8 (ENSMUSG00000036422) #18	Cnmd (ENSMUSG00000022025) #19	Sugt1 (ENSMUSG00000022024) #20	Elf1 (ENSMUSG00000036461) #21	Wbp4 (ENSMUSG00000022023) #22	Kbtbd6 (ENSMUSG00000075502) ##23	Kbtbd7 (ENSMUSG00000043881) #23	Mtrf1 (ENSMUSG00000022022) #24	Naa16 (ENSMUSG00000022020) #25	Rgcc (ENSMUSG00000022018) #26	Zfp957 (ENSMUSG00000071262) #27	Vwa8 (ENSMUSG00000058997) #28	Dgkh (ENSMUSG00000034731) #29	Akap11 (ENSMUSG00000022016) #30	Tnfsf11 (ENSMUSG00000022015) #31	Fam216b (ENSMUSG00000045655) #32	Epsti1 (ENSMUSG00000022014) #33	Dnajc15 (ENSMUSG00000022013) #34	Enox1 (ENSMUSG00000022012) #36	Ccdc122 (ENSMUSG00000034795) #37
Ryukyu mouse	MODERN SPECIES	5	Mzt1 (MGP_CAROLIEiJ_G0019558)	Dach1 (MGP_CAROLIEiJ_G0019557)	Klhl1 (MGP_CAROLIEiJ_G0019556) #7	Spertl (MGP_CAROLIEiJ_G0019555) #8	Pcdh9 (MGP_CAROLIEiJ_G0019554) #9	Pcdh20 (MGP_CAROLIEiJ_G0019553) #10	Tdrd3 (MGP_CAROLIEiJ_G0019551) #11	Diaph3 (MGP_CAROLIEiJ_G0019550) #12	Pcdh17 (MGP_CAROLIEiJ_G0019549) #14	Olfm4 (MGP_CAROLIEiJ_G0019548) #16	MGP_CAROLIEiJ_G0019547 #17	Pcdh8 (MGP_CAROLIEiJ_G0019546) #18	Cnmd (MGP_CAROLIEiJ_G0019545) #19	Sugt1 (MGP_CAROLIEiJ_G0019544) #20	Elf1 (MGP_CAROLIEiJ_G0019543) #21	Wbp4 (MGP_CAROLIEiJ_G0019542) #22	MGP_CAROLIEiJ_G0019541 ##23	Kbtbd7 (MGP_CAROLIEiJ_G0019540) #23	Mtrf1 (MGP_CAROLIEiJ_G0019539) #24	Naa16 (MGP_CAROLIEiJ_G0019538) #25	Rgcc (MGP_CAROLIEiJ_G0019537) #26	MGP_CAROLIEiJ_G0019536 #27	Vwa8 (MGP_CAROLIEiJ_G0019535) #28	Dgkh (MGP_CAROLIEiJ_G0019534) #29	Akap11 (MGP_CAROLIEiJ_G0019533) #30	Tnfsf11 (MGP_CAROLIEiJ_G0019532) #31	Fam216b (MGP_CAROLIEiJ_G0019531) #32	Epsti1 (MGP_CAROLIEiJ_G0019530) #33	Dnajc15 (MGP_CAROLIEiJ_G0019529) #34	MGP_CAROLIEiJ_G0019528 #35	Enox1 (MGP_CAROLIEiJ_G0019527) #36