Percora_a ANCESTRAL SPECIES 5 ENSGT00940000157618 #11 ENSGT00950000183140.a.b #12 ENSGT00940000159964 #13 ENSGT00940000155850 #14 ENSGT01100000263532.C.c.b #15 ENSGT00900000143154 ENSGT01100000263532.A.a.a.a.b.c.a #16 ENSGT01100000263532.A.a.a.a.b.c.b ##17 ENSGT01100000263532.A.a.a.b.b.a.b ##17 ENSGT01100000263532.A.a.a.b.b.a.a ##17 ENSGT01100000263523.A ENSGT00440000038972 #18 ENSGT00730000111148 #19 ENSGT00940000155611.s #20 ENSGT00940000153458.B #21 ENSGT00940000155392 #22 ENSGT00940000158443 #24 ENSGT00940000157578 #25 ENSGT00940000160478 #26 ENSGT00940000158532 #27 ENSGT00940000160192 #28 ENSGT00940000157043 #30 ENSGT00960000191797 ENSGT00940000155558 #31 ENSGT00940000160494 #32 ENSGT00390000016619.a #33 ENSGT00940000156472 #34 ENSGT00390000005923 #35 ENSGT00390000013771.e ENSGT00940000160909 #37 ENSGT00680000100018.a.a.a Bovidae ANCESTRAL SPECIES 8 ENSGT00940000157618 #11 ENSGT00950000183140.a.b #12 ENSGT00940000159964 #13 ENSGT00940000155850 #14 ENSGT01100000263532.C.c.b #15 ENSGT00900000143154 ENSGT01100000263532.A.a.a.a.b.c.a #16 ENSGT01100000263532.A.a.a.a.b.c.b ##17 ENSGT01100000263532.A.a.a.b.b.a.b ##17 ENSGT01100000263532.A.a.a.b.b.a.a ##17 ENSGT01100000263523.A ENSGT00440000038972 #18 ENSGT00730000111148 #19 ENSGT00940000155611.s #20 ENSGT00940000153458.B #21 ENSGT00940000155392 #22 ENSGT00940000158443 #24 ENSGT00940000157578 #25 ENSGT00940000160478 #26 ENSGT00940000158532 #27 ENSGT00940000160192 #28 ENSGT00940000157043 #30 ENSGT00960000191797 ENSGT00940000155558 #31 ENSGT00940000160494 #32 ENSGT00390000016619.a #33 ENSGT00940000156472 #34 ENSGT00390000005923 #35 ENSGT00390000013771.e ENSGT00940000160909 #37 ENSGT00680000100018.a.a.a Caprinae ANCESTRAL SPECIES 5 ENSGT00680000100059 #8 ENSGT00940000156791 #10 ENSGT00940000157618 #11 ENSGT00950000183140.a.b #12 ENSGT00940000159964 #13 ENSGT00940000155850 #14 ENSGT01100000263532.C.c.b #15 ENSGT01100000263532.A.a.a.a.b.c.a #16 ENSGT01100000263532.A.a.a.b.b.a.a ##17 ENSGT01100000263523.A ENSGT01100000263532.B #17 ENSGT00440000038972 #18 ENSGT00730000111148 #19 ENSGT00940000155611.s #20 ENSGT00940000153458.B #21 ENSGT00940000155392 #22 ENSGT00940000158443 #24 ENSGT00940000157578 #25 ENSGT00940000160478 #26 ENSGT00940000158532 #27 ENSGT00940000160192 #28 ENSGT00940000157043 #30 ENSGT00940000155558 #31 ENSGT00940000160494 #32 ENSGT00390000016619.a #33 ENSGT00940000156472 #34 ENSGT00390000005923 #35 ENSGT00940000160909 #37 ENSGT00680000100018.a.a.a ENSGT00390000015818.f ENSGT00940000158361 Goat DUPLICATION Goat MODERN SPECIES 11 ENSCHIG00000026156 #7 RBM45 (ENSCHIG00000010687) #8 ENSCHIG00000017164 #9 OSBPL6 (ENSCHIG00000008898) #10 PRKRA (ENSCHIG00000015333) #11 PJVK (ENSCHIG00000013011) #12 FKBP7 (ENSCHIG00000017480) #13 PLEKHA3 (ENSCHIG00000019515) #14 ENSCHIG00000018472 #15 ENSCHIG00000027063 #16 ENSCHIG00000016308 #17 ENSCHIG00000016292 #18 SESTD1 (ENSCHIG00000018999) #19 ZNF385B (ENSCHIG00000024559) #20 CWC22 (ENSCHIG00000017150) #21 UBE2E3 (ENSCHIG00000009564) #22 ENSCHIG00000023381 #23 ITGA4 (ENSCHIG00000019338) #24 CERKL (ENSCHIG00000025973) #25 NEUROD1 (ENSCHIG00000013471) #26 ITPRID2 (ENSCHIG00000012758) #27 PPP1R1C (ENSCHIG00000022279) #28 ENSCHIG00000012129 #29 PDE1A (ENSCHIG00000024041) #30 DNAJC10 (ENSCHIG00000003443) #31 FRZB (ENSCHIG00000021563) #32 NCKAP1 (ENSCHIG00000009748) #33 DUSP19 (ENSCHIG00000011127) #34 NUP35 (ENSCHIG00000023148) #35 ENSCHIG00000010879 #36 ZNF804A (ENSCHIG00000013519) #37 Goat MODERN SPECIES 13 HSP90AA1 (ENSCHIG00000022121) ENSCHIG00000017705 ENSCHIG00000026677 DYNC1H1 (ENSCHIG00000024295) PPP2R5C (ENSCHIG00000021833) RTL1 (ENSCHIG00000010656) DLK1 (ENSCHIG00000018116) BEGAIN (ENSCHIG00000018382) WDR25 (ENSCHIG00000012244) WARS1 (ENSCHIG00000023952) SLC25A47 (ENSCHIG00000021215) SLC25A29 (ENSCHIG00000013851) YY1 (ENSCHIG00000013547) DEGS2 (ENSCHIG00000020891) EVL (ENSCHIG00000010594) ENSCHIG00000009226 ##22 EML1 (ENSCHIG00000016953) CYP46A1 (ENSCHIG00000026315) HHIPL1 (ENSCHIG00000005850) CCDC85C (ENSCHIG00000025658) CCNK (ENSCHIG00000023689) ENSCHIG00000011739 BCL11B (ENSCHIG00000019860) VRK1 (ENSCHIG00000022864) ENSCHIG00000025004 ENSCHIG00000026870 ENSCHIG00000022099 AK7 (ENSCHIG00000017668) GSKIP (ENSCHIG00000013058) ATG2B (ENSCHIG00000020721) BDKRB1 (ENSCHIG00000002804) Rambouillet Sheep DUPLICATION Rambouillet Sheep MODERN SPECIES 11 PDE11A (ENSOARG00020022115) ENSOARG00020022078 #7 RBM45 (ENSOARG00020022028) #8 OSBPL6 (ENSOARG00020020986) #10 PRKRA (ENSOARG00020020855) #11 PJVK (ENSOARG00020020753) #12 FKBP7 (ENSOARG00020020704) #13 PLEKHA3 (ENSOARG00020020544) #14 ENSOARG00020020514 #15 ENSOARG00020020485 #16 ENSOARG00020020425 ##17 ENSOARG00020020356 SESTD1 (ENSOARG00020020002) #19 ZNF385B (ENSOARG00020019707) #20 CWC22 (ENSOARG00020019564) #21 UBE2E3 (ENSOARG00020019367) #22 ITGA4 (ENSOARG00020019068) #24 NEUROD1 (ENSOARG00020018887) #26 ITPRID2 (ENSOARG00020018365) #27 PPP1R1C (ENSOARG00020018285) #28 PDE1A (ENSOARG00020017541) #30 ENSOARG00020017466 DNAJC10 (ENSOARG00020017229) #31 ENSOARG00020017188 FRZB (ENSOARG00020017100) #32 NCKAP1 (ENSOARG00020016433) #33 DUSP19 (ENSOARG00020016314) #34 NUP35 (ENSOARG00020016181) #35 ENSOARG00020016153 ZNF804A (ENSOARG00020016116) #37 ENSOARG00020016097 Rambouillet Sheep MODERN SPECIES 9 ENSOARG00020012595 ENSOARG00020012559 DYNC1H1 (ENSOARG00020012049) PPP2R5C (ENSOARG00020011435) RTL1 (ENSOARG00020018582) ENSOARG00020018491 DLK1 (ENSOARG00020018436) BEGAIN (ENSOARG00020017556) ENSOARG00020017489 WARS1 (ENSOARG00020017286) SLC25A47 (ENSOARG00020017153) SLC25A29 (ENSOARG00020017063) YY1 (ENSOARG00020016955) DEGS2 (ENSOARG00020016909) EVL (ENSOARG00020016656) ENSOARG00020016600 #22 EML1 (ENSOARG00020016128) CYP46A1 (ENSOARG00020015908) HHIPL1 (ENSOARG00020015743) ENSOARG00020015705 CCNK (ENSOARG00020015528) SETD3 (ENSOARG00020015213) BCL11B (ENSOARG00020015087) ENSOARG00020015021 VRK1 (ENSOARG00020014781) PAPOLA (ENSOARG00020014182) ENSOARG00020014120 ENSOARG00020014097 AK7 (ENSOARG00020013867) GSKIP (ENSOARG00020013809) ATG2B (ENSOARG00020013228) Bovinae ANCESTRAL SPECIES 5 ENSGT00940000155850 #14 ENSGT01100000263532.C.c.b #15 ENSGT00900000143154 ENSGT01100000263532.A.a.a.a.b.c.a #16 ENSGT01100000263532.A.a.a.a.b.c.b ##17 ENSGT01100000263532.A.a.a.b.b.a.b ##17 ENSGT01100000263532.A.a.a.b.b.a.a ##17 ENSGT01100000263523.A ENSGT00440000038972 #18 ENSGT00730000111148 #19 ENSGT00390000007792.l.b ENSGT00940000155611.s #20 ENSGT00940000153458.B #21 ENSGT01050000244986.b.b.b.b.b.b.d.a ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b ENSGT00940000155392 #22 ENSGT00940000158443 #24 ENSGT00940000157578 #25 ENSGT00940000160478 #26 ENSGT00940000158532 #27 ENSGT00940000160192 #28 ENSGT00940000157043 #30 ENSGT00960000191797 ENSGT00940000155558 #31 ENSGT00940000160494 #32 ENSGT00390000016619.a #33 ENSGT00940000156472 #34 ENSGT00390000005923 #35 ENSGT00390000013771.e ENSGT00950000183031.B.e.b.a.b ENSGT00940000160909 #37 American bison MODERN SPECIES 2938 ENSBBBG00000022328 UBE2E3 (ENSBBBG00000005895) #22 ITGA4 (ENSBBBG00000005904) #24 CERKL (ENSBBBG00000008845) #25 NEUROD1 (ENSBBBG00000022504) #26 ITPRID2 (ENSBBBG00000022614) #27 PPP1R1C (ENSBBBG00000022645) #28 PDE1A (ENSBBBG00000022796) #30 ENSBBBG00000006009 DNAJC10 (ENSBBBG00000022922) #31 Bos ANCESTRAL SPECIES 6 ENSGT00940000159964 #13 ENSGT00940000155850 #14 ENSGT01100000263532.C.c.b #15 ENSGT00900000143154 ENSGT01100000263532.A.a.a.a.b.c.a #16 ENSGT01100000263532.A.a.a.a.b.c.b ##17 ENSGT01100000263532.A.a.a.b.b.a.b ##17 ENSGT01100000263523.A ENSGT00440000038972 #18 ENSGT00730000111148 #19 ENSGT00390000007792.l.b ENSGT00940000155611.s #20 ENSGT00940000153458.B #21 ENSGT01050000244986.b.b.b.b.b.b.d.a.b.a.a.a.a.b.a ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b ENSGT00940000155392 #22 ENSGT00940000158443 #24 ENSGT00940000157578 #25 ENSGT00940000160478 #26 ENSGT00940000158532 #27 ENSGT00940000160192 #28 ENSGT00940000157043 #30 ENSGT00960000191797 ENSGT00940000155558 #31 ENSGT00940000160494 #32 ENSGT00390000016619.a #33 ENSGT00940000156472 #34 ENSGT00390000005923 #35 ENSGT00390000013771.e ENSGT00950000183031.B.e.b.a.b ENSGT00940000160909 #37 Bos_a ANCESTRAL SPECIES 4 ENSGT00940000156791 #10 ENSGT00940000157618 #11 ENSGT00950000183140.a.b #12 ENSGT00940000159964 #13 ENSGT00940000155850 #14 ENSGT01100000263532.C.c.b #15 ENSGT00900000143154 ENSGT01100000263532.A.a.a.a.b.c.a #16 ENSGT01100000263523.A ENSGT00440000038972 #18 ENSGT00730000111148 #19 ENSGT00940000155611.s #20 ENSGT00390000007792.l.b ENSGT00940000153458.B #21 ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b ENSGT00940000155392 #22 ENSGT00940000158443 #24 ENSGT00940000157578 #25 ENSGT00940000160478 #26 ENSGT00940000158532 #27 ENSGT00940000160192 #28 ENSGT00940000157043 #30 ENSGT00960000191797 ENSGT00940000155558 #31 ENSGT00940000160494 #32 ENSGT00390000016619.a #33 ENSGT00940000156472 #34 ENSGT00390000005923 #35 ENSGT00390000013771.e ENSGT00950000183031.B.e.b.a.b ENSGT00940000160909 #37 Wild yak MODERN SPECIES 2248 ENSBMUG00000018492 UBE2E3 (ENSBMUG00000018459) #22 Domestic yak MODERN SPECIES 11 PRKRA (ENSBGRG00000000775) #11 PJVK (ENSBGRG00000000796) #12 FKBP7 (ENSBGRG00000000806) #13 PLEKHA3 (ENSBGRG00000000848) #14 ENSBGRG00000000896 #15 ENSBGRG00000000926 ENSBGRG00000000936 #16 ENSBGRG00000000967 CCDC141 (ENSBGRG00000001017) #18 SESTD1 (ENSBGRG00000001115) #19 ENSBGRG00000001135 ZNF385B (ENSBGRG00000001148) #20 ENSBGRG00000001208 CWC22 (ENSBGRG00000001221) #21 ENSBGRG00000001267 UBE2E3 (ENSBGRG00000001286) #22 ITGA4 (ENSBGRG00000001314) #24 CERKL (ENSBGRG00000001342) #25 NEUROD1 (ENSBGRG00000001450) #26 ITPRID2 (ENSBGRG00000001467) #27 PPP1R1C (ENSBGRG00000001643) #28 PDE1A (ENSBGRG00000001740) #30 ENSBGRG00000002156 DNAJC10 (ENSBGRG00000002186) #31 ENSBGRG00000002393 FRZB (ENSBGRG00000002408) #32 NCKAP1 (ENSBGRG00000002437) #33 ENSBGRG00000002566 DUSP19 (ENSBGRG00000002575) #34 NUP35 (ENSBGRG00000002606) #35 ENSBGRG00000002666 Bos_b ANCESTRAL SPECIES 3 ENSGT00940000159964 #13 ENSGT00940000155850 #14 ENSGT01100000263532.C.c.b #15 ENSGT00900000143154 ENSGT01100000263532.A.a.a.a.b.c.a #16 ENSGT01100000263532.A.a.a.a.b.c.b ##17 ENSGT01100000263532.A.a.a.b.b.a.b ##17 ENSGT01100000263523.A ENSGT00440000038972 #18 ENSGT00730000111148 #19 ENSGT00390000007792.l.b ENSGT00940000155611.s #20 ENSGT00940000153458.B #21 ENSGT01050000244986.b.b.b.b.b.b.d.a.b.a.a.a.a.b.a ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b ENSGT00940000155392 #22 ENSGT00940000158443 #24 ENSGT00940000157578 #25 ENSGT00940000160478 #26 ENSGT00940000158532 #27 ENSGT00940000160192 #28 ENSGT00940000157043 #30 ENSGT00960000191797 ENSGT00390000012818.p.q ENSGT00940000155558.`b #31 ENSGT00940000160494 #32 ENSGT00390000016619.a #33 ENSGT00940000156472 #34 ENSGT00390000005923 #35 ENSGT00390000013771.e ENSGT00950000183031.B.e.b.a.b Cow MODERN SPECIES 11 PLEKHA3 (ENSBTAG00000001098) #14 ENSBTAG00000052709 #15 ENSBTAG00000052348 ENSBTAG00000053974 #16 ENSBTAG00000052033 ##17 ENSBTAG00000054051 ##17 ENSBTAG00000053626 CCDC141 (ENSBTAG00000027875) #18 SESTD1 (ENSBTAG00000001861) #19 ENSBTAG00000046904 ZNF385B (ENSBTAG00000003120) #20 CWC22 (ENSBTAG00000021726) #21 ENSBTAG00000050289 ENSBTAG00000052891 ENSBTAG00000045838 UBE2E3 (ENSBTAG00000043956) #22 ITGA4 (ENSBTAG00000009256) #24 CERKL (ENSBTAG00000009257) #25 NEUROD1 (ENSBTAG00000001755) #26 ITPRID2 (ENSBTAG00000000937) #27 PPP1R1C (ENSBTAG00000044009) #28 ENSBTAG00000050322 PDE1A (ENSBTAG00000012100) #30 ENSBTAG00000053080 ENSBTAG00000051395 DNAJC10 (ENSBTAG00000008390) #31 FRZB (ENSBTAG00000010977) #32 NCKAP1 (ENSBTAG00000033662) #33 DUSP19 (ENSBTAG00000020961) #34 NUP35 (ENSBTAG00000009777) #35 ENSBTAG00000052131 Hybrid Bos Indicus MODERN SPECIES 11 ENSBIXG00005029747 #15 ENSBIXG00005029587 ENSBIXG00005029567 #16 ENSBIXG00005029553 ##17 ENSBIXG00005029542 ##17 ENSBIXG00005029528 CCDC141 (ENSBIXG00005029374) #18 SESTD1 (ENSBIXG00005029294) #19 ENSBIXG00005000002 ZNF385B (ENSBIXG00005007906) #20 CWC22 (ENSBIXG00005007942) #21 ENSBIXG00005007959 ENSBIXG00005007982 ENSBIXG00005007989 ENSBIXG00005007994 UBE2E3 (ENSBIXG00005008012) #22 ITGA4 (ENSBIXG00005000108) #24 CERKL (ENSBIXG00005000131) #25 NEUROD1 (ENSBIXG00005008204) #26 ITPRID2 (ENSBIXG00005008302) #27 PPP1R1C (ENSBIXG00005006079) #28 PDE1A (ENSBIXG00005008445) #30 ENSBIXG00005008480 ENSBIXG00005008490 ENSBIXG00005008543 #31 FRZB (ENSBIXG00005005936) #32 NCKAP1 (ENSBIXG00005008652) #33 DUSP19 (ENSBIXG00005008681) #34 NUP35 (ENSBIXG00005008697) #35 ENSBIXG00005008723 ENSBIXG00005000263 Siberian musk deer DUPLICATION Siberian musk deer MODERN SPECIES 354 ENSMMSG00000018954 FAM76A (ENSMMSG00000018778) STX12 (ENSMMSG00000018678) PPP1R8 (ENSMMSG00000018605) ENSMMSG00000018593 ENSMMSG00000018576 RPA2 (ENSMMSG00000018523) SMPDL3B (ENSMMSG00000018430) XKR8 (ENSMMSG00000018399) ENSMMSG00000018375 EYA3 (ENSMMSG00000018084) PTAFR (ENSMMSG00000018035) DNAJC8 (ENSMMSG00000018002) ENSMMSG00000017950 SESN2 (ENSMMSG00000017873) ENSMMSG00000017822 #22 MED18 (ENSMMSG00000017791) ENSMMSG00000017764 Siberian musk deer MODERN SPECIES 114 PRKRA (ENSMMSG00000005904) #11 PJVK (ENSMMSG00000005947) #12 FKBP7 (ENSMMSG00000005985) #13 ENSMMSG00000006007 #14 TTN (ENSMMSG00000006126) ENSMMSG00000006358 ENSMMSG00000006383 #16 ENSMMSG00000006439 ##17 CCDC141 (ENSMMSG00000006504) #18 SESTD1 (ENSMMSG00000006557) #19 ENSMMSG00000006636 ZNF385B (ENSMMSG00000006663) #20 CWC22 (ENSMMSG00000006828) #21 ENSMMSG00000006900 ENSMMSG00000006930 #22 ITGA4 (ENSMMSG00000007012) #24 CERKL (ENSMMSG00000007095) #25 NEUROD1 (ENSMMSG00000007482) #26 ITPRID2 (ENSMMSG00000007531) #27 PPP1R1C (ENSMMSG00000007819) #28 PDE1A (ENSMMSG00000007901) #30 ENSMMSG00000008046 DNAJC10 (ENSMMSG00000008076) #31 ENSMMSG00000008197 FRZB (ENSMMSG00000008223) #32 NCKAP1 (ENSMMSG00000008302) #33 DUSP19 (ENSMMSG00000008668) #34 NUP35 (ENSMMSG00000008706) #35 ENSMMSG00000008776 ENSMMSG00000008797 Siberian musk deer MODERN SPECIES 174 C8orf88 (ENSMMSG00000000359) PIP4P2 (ENSMMSG00000000374) OTUD6B (ENSMMSG00000000420) LRRC69 (ENSMMSG00000000512) SLC26A7 (ENSMMSG00000000548) RUNX1T1 (ENSMMSG00000000603) TRIQK (ENSMMSG00000000665) ENSMMSG00000000677 ENSMMSG00000000702 RBM12B (ENSMMSG00000000739) TMEM67 (ENSMMSG00000000780) ENSMMSG00000000936 PDP1 (ENSMMSG00000000948) CDH17 (ENSMMSG00000000983) GEM (ENSMMSG00000001083) ENSMMSG00000001099 #22 RAD54B (ENSMMSG00000001134) VIRMA (ENSMMSG00000001204) ESRP1 (ENSMMSG00000001302) DPY19L4 (ENSMMSG00000001374) INTS8 (ENSMMSG00000001404) CCNE2 (ENSMMSG00000001449) TP53INP1 (ENSMMSG00000001465) NDUFAF6 (ENSMMSG00000001482) PLEKHF2 (ENSMMSG00000001511) CFAP418 (ENSMMSG00000001518) GDF6 (ENSMMSG00000001549) ENSMMSG00000001556 MTERF3 (ENSMMSG00000001570) PTDSS1 (ENSMMSG00000001590) SDC2 (ENSMMSG00000001606)