Amniota	ANCESTRAL SPECIES	6	ENSGT01100000263523.E	ENSGT01100000263523.D	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT00940000177836	ENSGT00940000177542	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Mammalia	ANCESTRAL SPECIES	6	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.A	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.B #17	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Theria	ANCESTRAL SPECIES	5	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Eutheria	ANCESTRAL SPECIES	10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Boreoeutheria	ANCESTRAL SPECIES	14	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Laurasiatheria	ANCESTRAL SPECIES	12	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Laurasiatheria_a	ANCESTRAL SPECIES	16	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Artiodactyla	ANCESTRAL SPECIES	13	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Artiodactyla_a	ANCESTRAL SPECIES	13	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Artiodactyla_b	ANCESTRAL SPECIES	12	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Pecora	ANCESTRAL SPECIES	24	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00960000191797	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Percora_a	ANCESTRAL SPECIES	5	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00960000191797	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000013771.e	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Bovidae	ANCESTRAL SPECIES	8	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00960000191797	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000013771.e	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Caprinae	ANCESTRAL SPECIES	5	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT01100000263532.B #17	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Goat	DUPLICATION
Goat	MODERN SPECIES	11	ENSCHIG00000026156 #7	RBM45 (ENSCHIG00000010687) #8	ENSCHIG00000017164 #9	OSBPL6 (ENSCHIG00000008898) #10	PRKRA (ENSCHIG00000015333) #11	PJVK (ENSCHIG00000013011) #12	FKBP7 (ENSCHIG00000017480) #13	PLEKHA3 (ENSCHIG00000019515) #14	ENSCHIG00000018472 #15	ENSCHIG00000027063 #16	ENSCHIG00000016308 #17	ENSCHIG00000016292 #18	SESTD1 (ENSCHIG00000018999) #19	ZNF385B (ENSCHIG00000024559) #20	CWC22 (ENSCHIG00000017150) #21	UBE2E3 (ENSCHIG00000009564) #22	ENSCHIG00000023381 #23	ITGA4 (ENSCHIG00000019338) #24	CERKL (ENSCHIG00000025973) #25	NEUROD1 (ENSCHIG00000013471) #26	ITPRID2 (ENSCHIG00000012758) #27	PPP1R1C (ENSCHIG00000022279) #28	ENSCHIG00000012129 #29	PDE1A (ENSCHIG00000024041) #30	DNAJC10 (ENSCHIG00000003443) #31	FRZB (ENSCHIG00000021563) #32	NCKAP1 (ENSCHIG00000009748) #33	DUSP19 (ENSCHIG00000011127) #34	NUP35 (ENSCHIG00000023148) #35	ENSCHIG00000010879 #36	ZNF804A (ENSCHIG00000013519) #37
Goat	MODERN SPECIES	13	HSP90AA1 (ENSCHIG00000022121)	ENSCHIG00000017705	ENSCHIG00000026677	DYNC1H1 (ENSCHIG00000024295)	PPP2R5C (ENSCHIG00000021833)	RTL1 (ENSCHIG00000010656)	DLK1 (ENSCHIG00000018116)	BEGAIN (ENSCHIG00000018382)	WDR25 (ENSCHIG00000012244)	WARS1 (ENSCHIG00000023952)	SLC25A47 (ENSCHIG00000021215)	SLC25A29 (ENSCHIG00000013851)	YY1 (ENSCHIG00000013547)	DEGS2 (ENSCHIG00000020891)	EVL (ENSCHIG00000010594)	ENSCHIG00000009226 ##22	EML1 (ENSCHIG00000016953)	CYP46A1 (ENSCHIG00000026315)	HHIPL1 (ENSCHIG00000005850)	CCDC85C (ENSCHIG00000025658)	CCNK (ENSCHIG00000023689)	ENSCHIG00000011739	BCL11B (ENSCHIG00000019860)	VRK1 (ENSCHIG00000022864)	ENSCHIG00000025004	ENSCHIG00000026870	ENSCHIG00000022099	AK7 (ENSCHIG00000017668)	GSKIP (ENSCHIG00000013058)	ATG2B (ENSCHIG00000020721)	BDKRB1 (ENSCHIG00000002804)
Rambouillet Sheep	DUPLICATION
Rambouillet Sheep	MODERN SPECIES	11	PDE11A (ENSOARG00020022115)	ENSOARG00020022078 #7	RBM45 (ENSOARG00020022028) #8	OSBPL6 (ENSOARG00020020986) #10	PRKRA (ENSOARG00020020855) #11	PJVK (ENSOARG00020020753) #12	FKBP7 (ENSOARG00020020704) #13	PLEKHA3 (ENSOARG00020020544) #14	ENSOARG00020020514 #15	ENSOARG00020020485 #16	ENSOARG00020020425 ##17	ENSOARG00020020356	SESTD1 (ENSOARG00020020002) #19	ZNF385B (ENSOARG00020019707) #20	CWC22 (ENSOARG00020019564) #21	UBE2E3 (ENSOARG00020019367) #22	ITGA4 (ENSOARG00020019068) #24	NEUROD1 (ENSOARG00020018887) #26	ITPRID2 (ENSOARG00020018365) #27	PPP1R1C (ENSOARG00020018285) #28	PDE1A (ENSOARG00020017541) #30	ENSOARG00020017466	DNAJC10 (ENSOARG00020017229) #31	ENSOARG00020017188	FRZB (ENSOARG00020017100) #32	NCKAP1 (ENSOARG00020016433) #33	DUSP19 (ENSOARG00020016314) #34	NUP35 (ENSOARG00020016181) #35	ENSOARG00020016153	ZNF804A (ENSOARG00020016116) #37	ENSOARG00020016097
Rambouillet Sheep	MODERN SPECIES	9	ENSOARG00020012595	ENSOARG00020012559	DYNC1H1 (ENSOARG00020012049)	PPP2R5C (ENSOARG00020011435)	RTL1 (ENSOARG00020018582)	ENSOARG00020018491	DLK1 (ENSOARG00020018436)	BEGAIN (ENSOARG00020017556)	ENSOARG00020017489	WARS1 (ENSOARG00020017286)	SLC25A47 (ENSOARG00020017153)	SLC25A29 (ENSOARG00020017063)	YY1 (ENSOARG00020016955)	DEGS2 (ENSOARG00020016909)	EVL (ENSOARG00020016656)	ENSOARG00020016600 #22	EML1 (ENSOARG00020016128)	CYP46A1 (ENSOARG00020015908)	HHIPL1 (ENSOARG00020015743)	ENSOARG00020015705	CCNK (ENSOARG00020015528)	SETD3 (ENSOARG00020015213)	BCL11B (ENSOARG00020015087)	ENSOARG00020015021	VRK1 (ENSOARG00020014781)	PAPOLA (ENSOARG00020014182)	ENSOARG00020014120	ENSOARG00020014097	AK7 (ENSOARG00020013867)	GSKIP (ENSOARG00020013809)	ATG2B (ENSOARG00020013228)
Bovinae	ANCESTRAL SPECIES	5	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000007792.l.b	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT01050000244986.b.b.b.b.b.b.d.a	ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00960000191797	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000013771.e	ENSGT00950000183031.B.e.b.a.b	ENSGT00940000160909 #37
American bison	MODERN SPECIES	2938															ENSBBBG00000022328	UBE2E3 (ENSBBBG00000005895) #22	ITGA4 (ENSBBBG00000005904) #24	CERKL (ENSBBBG00000008845) #25	NEUROD1 (ENSBBBG00000022504) #26	ITPRID2 (ENSBBBG00000022614) #27	PPP1R1C (ENSBBBG00000022645) #28	PDE1A (ENSBBBG00000022796) #30	ENSBBBG00000006009	DNAJC10 (ENSBBBG00000022922) #31
Bos	ANCESTRAL SPECIES	6	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000007792.l.b	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT01050000244986.b.b.b.b.b.b.d.a.b.a.a.a.a.b.a	ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00960000191797	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000013771.e	ENSGT00950000183031.B.e.b.a.b	ENSGT00940000160909 #37
Bos_a	ANCESTRAL SPECIES	4	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000007792.l.b	ENSGT00940000153458.B #21	ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00960000191797	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000013771.e	ENSGT00950000183031.B.e.b.a.b	ENSGT00940000160909 #37
Wild yak	MODERN SPECIES	2248															ENSBMUG00000018492	UBE2E3 (ENSBMUG00000018459) #22
Domestic yak	MODERN SPECIES	11	PRKRA (ENSBGRG00000000775) #11	PJVK (ENSBGRG00000000796) #12	FKBP7 (ENSBGRG00000000806) #13	PLEKHA3 (ENSBGRG00000000848) #14	ENSBGRG00000000896 #15	ENSBGRG00000000926	ENSBGRG00000000936 #16	ENSBGRG00000000967	CCDC141 (ENSBGRG00000001017) #18	SESTD1 (ENSBGRG00000001115) #19	ENSBGRG00000001135	ZNF385B (ENSBGRG00000001148) #20	ENSBGRG00000001208	CWC22 (ENSBGRG00000001221) #21	ENSBGRG00000001267	UBE2E3 (ENSBGRG00000001286) #22	ITGA4 (ENSBGRG00000001314) #24	CERKL (ENSBGRG00000001342) #25	NEUROD1 (ENSBGRG00000001450) #26	ITPRID2 (ENSBGRG00000001467) #27	PPP1R1C (ENSBGRG00000001643) #28	PDE1A (ENSBGRG00000001740) #30	ENSBGRG00000002156	DNAJC10 (ENSBGRG00000002186) #31	ENSBGRG00000002393	FRZB (ENSBGRG00000002408) #32	NCKAP1 (ENSBGRG00000002437) #33	ENSBGRG00000002566	DUSP19 (ENSBGRG00000002575) #34	NUP35 (ENSBGRG00000002606) #35	ENSBGRG00000002666
Bos_b	ANCESTRAL SPECIES	3	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000007792.l.b	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT01050000244986.b.b.b.b.b.b.d.a.b.a.a.a.a.b.a	ENSGT01090000260003.a.b.b.a.a.b.b.a.h.b	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00960000191797	ENSGT00390000012818.p.q	ENSGT00940000155558.`b #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000013771.e	ENSGT00950000183031.B.e.b.a.b
Cow	MODERN SPECIES	11	PLEKHA3 (ENSBTAG00000001098) #14	ENSBTAG00000052709 #15	ENSBTAG00000052348	ENSBTAG00000053974 #16	ENSBTAG00000052033 ##17	ENSBTAG00000054051 ##17	ENSBTAG00000053626	CCDC141 (ENSBTAG00000027875) #18	SESTD1 (ENSBTAG00000001861) #19	ENSBTAG00000046904	ZNF385B (ENSBTAG00000003120) #20	CWC22 (ENSBTAG00000021726) #21	ENSBTAG00000050289	ENSBTAG00000052891	ENSBTAG00000045838	UBE2E3 (ENSBTAG00000043956) #22	ITGA4 (ENSBTAG00000009256) #24	CERKL (ENSBTAG00000009257) #25	NEUROD1 (ENSBTAG00000001755) #26	ITPRID2 (ENSBTAG00000000937) #27	PPP1R1C (ENSBTAG00000044009) #28	ENSBTAG00000050322	PDE1A (ENSBTAG00000012100) #30	ENSBTAG00000053080	ENSBTAG00000051395	DNAJC10 (ENSBTAG00000008390) #31	FRZB (ENSBTAG00000010977) #32	NCKAP1 (ENSBTAG00000033662) #33	DUSP19 (ENSBTAG00000020961) #34	NUP35 (ENSBTAG00000009777) #35	ENSBTAG00000052131
Hybrid Bos Indicus	MODERN SPECIES	11	ENSBIXG00005029747 #15	ENSBIXG00005029587	ENSBIXG00005029567 #16	ENSBIXG00005029553 ##17	ENSBIXG00005029542 ##17	ENSBIXG00005029528	CCDC141 (ENSBIXG00005029374) #18	SESTD1 (ENSBIXG00005029294) #19	ENSBIXG00005000002	ZNF385B (ENSBIXG00005007906) #20	CWC22 (ENSBIXG00005007942) #21	ENSBIXG00005007959	ENSBIXG00005007982	ENSBIXG00005007989	ENSBIXG00005007994	UBE2E3 (ENSBIXG00005008012) #22	ITGA4 (ENSBIXG00005000108) #24	CERKL (ENSBIXG00005000131) #25	NEUROD1 (ENSBIXG00005008204) #26	ITPRID2 (ENSBIXG00005008302) #27	PPP1R1C (ENSBIXG00005006079) #28	PDE1A (ENSBIXG00005008445) #30	ENSBIXG00005008480	ENSBIXG00005008490	ENSBIXG00005008543 #31	FRZB (ENSBIXG00005005936) #32	NCKAP1 (ENSBIXG00005008652) #33	DUSP19 (ENSBIXG00005008681) #34	NUP35 (ENSBIXG00005008697) #35	ENSBIXG00005008723	ENSBIXG00005000263
Siberian musk deer	DUPLICATION
Siberian musk deer	MODERN SPECIES	354	ENSMMSG00000018954	FAM76A (ENSMMSG00000018778)	STX12 (ENSMMSG00000018678)	PPP1R8 (ENSMMSG00000018605)	ENSMMSG00000018593	ENSMMSG00000018576	RPA2 (ENSMMSG00000018523)	SMPDL3B (ENSMMSG00000018430)	XKR8 (ENSMMSG00000018399)	ENSMMSG00000018375	EYA3 (ENSMMSG00000018084)	PTAFR (ENSMMSG00000018035)	DNAJC8 (ENSMMSG00000018002)	ENSMMSG00000017950	SESN2 (ENSMMSG00000017873)	ENSMMSG00000017822 #22	MED18 (ENSMMSG00000017791)	ENSMMSG00000017764
Siberian musk deer	MODERN SPECIES	114		PRKRA (ENSMMSG00000005904) #11	PJVK (ENSMMSG00000005947) #12	FKBP7 (ENSMMSG00000005985) #13	ENSMMSG00000006007 #14	TTN (ENSMMSG00000006126)	ENSMMSG00000006358	ENSMMSG00000006383 #16	ENSMMSG00000006439 ##17	CCDC141 (ENSMMSG00000006504) #18	SESTD1 (ENSMMSG00000006557) #19	ENSMMSG00000006636	ZNF385B (ENSMMSG00000006663) #20	CWC22 (ENSMMSG00000006828) #21	ENSMMSG00000006900	ENSMMSG00000006930 #22	ITGA4 (ENSMMSG00000007012) #24	CERKL (ENSMMSG00000007095) #25	NEUROD1 (ENSMMSG00000007482) #26	ITPRID2 (ENSMMSG00000007531) #27	PPP1R1C (ENSMMSG00000007819) #28	PDE1A (ENSMMSG00000007901) #30	ENSMMSG00000008046	DNAJC10 (ENSMMSG00000008076) #31	ENSMMSG00000008197	FRZB (ENSMMSG00000008223) #32	NCKAP1 (ENSMMSG00000008302) #33	DUSP19 (ENSMMSG00000008668) #34	NUP35 (ENSMMSG00000008706) #35	ENSMMSG00000008776	ENSMMSG00000008797
Siberian musk deer	MODERN SPECIES	174	C8orf88 (ENSMMSG00000000359)	PIP4P2 (ENSMMSG00000000374)	OTUD6B (ENSMMSG00000000420)	LRRC69 (ENSMMSG00000000512)	SLC26A7 (ENSMMSG00000000548)	RUNX1T1 (ENSMMSG00000000603)	TRIQK (ENSMMSG00000000665)	ENSMMSG00000000677	ENSMMSG00000000702	RBM12B (ENSMMSG00000000739)	TMEM67 (ENSMMSG00000000780)	ENSMMSG00000000936	PDP1 (ENSMMSG00000000948)	CDH17 (ENSMMSG00000000983)	GEM (ENSMMSG00000001083)	ENSMMSG00000001099 #22	RAD54B (ENSMMSG00000001134)	VIRMA (ENSMMSG00000001204)	ESRP1 (ENSMMSG00000001302)	DPY19L4 (ENSMMSG00000001374)	INTS8 (ENSMMSG00000001404)	CCNE2 (ENSMMSG00000001449)	TP53INP1 (ENSMMSG00000001465)	NDUFAF6 (ENSMMSG00000001482)	PLEKHF2 (ENSMMSG00000001511)	CFAP418 (ENSMMSG00000001518)	GDF6 (ENSMMSG00000001549)	ENSMMSG00000001556	MTERF3 (ENSMMSG00000001570)	PTDSS1 (ENSMMSG00000001590)	SDC2 (ENSMMSG00000001606)
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	26	RBM45 (ENSCHYG00000024364) #8	OSBPL6 (ENSCHYG00000023926) #10	PRKRA (ENSCHYG00000023726) #11	PJVK (ENSCHYG00000023643) #12	FKBP7 (ENSCHYG00000023614) #13	PLEKHA3 (ENSCHYG00000023579) #14	ENSCHYG00000023539	ENSCHYG00000023464 #16	ENSCHYG00000023401 ##17	ENSCHYG00000023326 ##17	ENSCHYG00000023242	CCDC141 (ENSCHYG00000022727) #18	SESTD1 (ENSCHYG00000022284) #19	ZNF385B (ENSCHYG00000022055) #20	CWC22 (ENSCHYG00000021944) #21	UBE2E3 (ENSCHYG00000021853) #22	ITGA4 (ENSCHYG00000021409) #24	CERKL (ENSCHYG00000021285) #25	NEUROD1 (ENSCHYG00000021265) #26	ITPRID2 (ENSCHYG00000020772) #27	PPP1R1C (ENSCHYG00000020631) #28	PDE1A (ENSCHYG00000020015) #30	ENSCHYG00000019967	DNAJC10 (ENSCHYG00000019400) #31	FRZB (ENSCHYG00000019191) #32	NCKAP1 (ENSCHYG00000018731) #33	NUP35 (ENSCHYG00000018472) #35	ENSCHYG00000018421	ZNF804A (ENSCHYG00000018360) #37	ENSCHYG00000018320	ENSCHYG00000018238
Yarkand deer	MODERN SPECIES	1030																ENSCHYG00000010552 #22
Yarkand deer	MODERN SPECIES	1323	ZC3H12B (ENSCHYG00000015865)	ZC4H2 (ENSCHYG00000016079)	ENSCHYG00000016226	MTMR8 (ENSCHYG00000016301)	ASB12 (ENSCHYG00000016887)	AMER1 (ENSCHYG00000016928)	ENSCHYG00000016974	SPIN4 (ENSCHYG00000017679)	ENSCHYG00000017687	ENSCHYG00000017717	ENSCHYG00000017756	ENSCHYG00000017806	ENSCHYG00000017826	ENSCHYG00000017857	DIPK2B (ENSCHYG00000018092)	ENSCHYG00000018171 #22	KDM6A (ENSCHYG00000018260)	DUSP21 (ENSCHYG00000019815)	FUNDC1 (ENSCHYG00000019848)	ENSCHYG00000019917	ENSCHYG00000019980	NDP (ENSCHYG00000019992)	MAOB (ENSCHYG00000020035)	MAOA (ENSCHYG00000020167)	ENSCHYG00000020373	ENSCHYG00000020396	ENSCHYG00000020427	CASK (ENSCHYG00000020609)	GPR82 (ENSCHYG00000021859)	GPR34 (ENSCHYG00000021879)	NYX (ENSCHYG00000021892)
Cetacea	ANCESTRAL SPECIES	14	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000154666.e.b	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Blue whale	MODERN SPECIES	18	FKBP7 (ENSBMSG00010006490) #13	ENSBMSG00010006506 #14	ENSBMSG00010006522	ENSBMSG00010006534	ENSBMSG00010006553 #16	ENSBMSG00010006570 ##17	ENSBMSG00010006636	ENSBMSG00010006702	CCDC141 (ENSBMSG00010006748) #18	ENSBMSG00010006815 #36	SESTD1 (ENSBMSG00010006833) #19	ZNF385B (ENSBMSG00010006861) #20	CWC22 (ENSBMSG00010006896) #21	ENSBMSG00010006908	ENSBMSG00010006919	UBE2E3 (ENSBMSG00010006937) #22	ENSBMSG00010006945	ITGA4 (ENSBMSG00010006973) #24	CERKL (ENSBMSG00010007050) #25	NEUROD1 (ENSBMSG00010007125) #26	ITPRID2 (ENSBMSG00010007174) #27	PPP1R1C (ENSBMSG00010007255) #28	PDE1A (ENSBMSG00010007302) #30	DNAJC10 (ENSBMSG00010007475) #31	FRZB (ENSBMSG00010007509) #32	ENSBMSG00010007519	NCKAP1 (ENSBMSG00010007555) #33	DUSP19 (ENSBMSG00010007620) #34	NUP35 (ENSBMSG00010007625) #35	ZNF804A (ENSBMSG00010007640) #37	ZC3H15 (ENSBMSG00010007656)
Odontoceti	ANCESTRAL SPECIES	13	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000154666.e.b	ENSGT00940000154666.f	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00940000164671.a.b
Sperm whale	MODERN SPECIES	11	PJVK (ENSPCTG00005003934) #12	PRKRA (ENSPCTG00005003951) #11	FKBP7 (ENSPCTG00005003977) #13	PLEKHA3 (ENSPCTG00005003988) #14	TTN (ENSPCTG00005004468)	ENSPCTG00005009577 #16	ENSPCTG00005009648 ##17	ENSPCTG00005009719 ##17	ENSPCTG00005009822	CCDC141 (ENSPCTG00005009872) #18	ENSPCTG00005010237	SESTD1 (ENSPCTG00005010291) #19	ZNF385B (ENSPCTG00005010411) #20	CWC22 (ENSPCTG00005010703) #21	ENSPCTG00005010795	UBE2E3 (ENSPCTG00005010876) #22	ENSPCTG00005010930	ENSPCTG00005010964	ITGA4 (ENSPCTG00005010998) #24	CERKL (ENSPCTG00005011071) #25	NEUROD1 (ENSPCTG00005011495) #26	ITPRID2 (ENSPCTG00005011542) #27	PPP1R1C (ENSPCTG00005011810) #28	ENSPCTG00005011921	PDE1A (ENSPCTG00005011951) #30	DNAJC10 (ENSPCTG00005012228) #31	FRZB (ENSPCTG00005012506) #32	NCKAP1 (ENSPCTG00005012620) #33	DUSP19 (ENSPCTG00005013202) #34	NUP35 (ENSPCTG00005013319) #35	ENSPCTG00005013399
Odontoceti_a	ANCESTRAL SPECIES	10	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.L	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000154666.e.b	ENSGT00940000154666.f	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00940000164671.a.b
Dolphin	MODERN SPECIES	5428																UBE2E3 (ENSTTRG00000001361) #22
Odontoceti_b	ANCESTRAL SPECIES	12	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.L	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT00530000063516.a.a.c.a.a	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000154666.e.b	ENSGT00940000154666.f	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00940000164671.a.b
Vaquita	MODERN SPECIES	18	PRKRA (ENSPSNG00000007030) #11	PJVK (ENSPSNG00000006966) #12	FKBP7 (ENSPSNG00000006918) #13	ENSPSNG00000006805	PLEKHA3 (ENSPSNG00000006784) #14	ENSPSNG00000006762	ENSPSNG00000006702 ##17	ENSPSNG00000006659 ##17	ENSPSNG00000006449	ENSPSNG00000006341	ENSPSNG00000006293 #18	SESTD1 (ENSPSNG00000006197) #19	ZNF385B (ENSPSNG00000006076) #20	CWC22 (ENSPSNG00000006006) #21	ENSPSNG00000005957	UBE2E3 (ENSPSNG00000005926) #22	ENSPSNG00000005901	ITGA4 (ENSPSNG00000005792) #24	CERKL (ENSPSNG00000005590) #25	NEUROD1 (ENSPSNG00000005514) #26	ITPRID2 (ENSPSNG00000005449) #27	PPP1R1C (ENSPSNG00000005361) #28	ENSPSNG00000005342	PDE1A (ENSPSNG00000005271) #30	DNAJC10 (ENSPSNG00000005199) #31	FRZB (ENSPSNG00000005124) #32	NCKAP1 (ENSPSNG00000005007) #33	DUSP19 (ENSPSNG00000004880) #34	NUP35 (ENSPSNG00000004839) #35	ZNF804A (ENSPSNG00000004794) #37	ENSPSNG00000004786
Monodontidae	ANCESTRAL SPECIES	10	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00530000063516.a.a.c.a.a	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000154666.e.b	ENSGT00940000154666.f	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00940000164671.a.b
Narwhal	MODERN SPECIES	302	ENSMMNG00015014238 #7	RBM45 (ENSMMNG00015014220) #8	OSBPL6 (ENSMMNG00015014111) #10	PRKRA (ENSMMNG00015014019) #11	PJVK (ENSMMNG00015014003) #12	FKBP7 (ENSMMNG00015013990) #13	ENSMMNG00015013983	PLEKHA3 (ENSMMNG00015013955) #14	TTN (ENSMMNG00015009913)	ENSMMNG00015008454	CCDC141 (ENSMMNG00015008359) #18	SESTD1 (ENSMMNG00015008251) #19	ZNF385B (ENSMMNG00015008221) #20	CWC22 (ENSMMNG00015008180) #21	ENSMMNG00015008167	UBE2E3 (ENSMMNG00015008144) #22	ENSMMNG00015008128	ENSMMNG00015008116	ITGA4 (ENSMMNG00015008070) #24	CERKL (ENSMMNG00015007966) #25	NEUROD1 (ENSMMNG00015007920) #26	ITPRID2 (ENSMMNG00015007832) #27	PPP1R1C (ENSMMNG00015007776) #28	PDE1A (ENSMMNG00015007747) #30	DNAJC10 (ENSMMNG00015007686) #31	FRZB (ENSMMNG00015007636) #32	NCKAP1 (ENSMMNG00015007562) #33	DUSP19 (ENSMMNG00015007499) #34	NUP35 (ENSMMNG00015007466) #35	ZNF804A (ENSMMNG00015007445) #37	ENSMMNG00015007434
Beluga whale	MODERN SPECIES	84	PJVK (ENSDLEG00000009801) #12	FKBP7 (ENSDLEG00000009831) #13	PLEKHA3 (ENSDLEG00000009842) #14	ENSDLEG00000009851	ENSDLEG00000009862	ENSDLEG00000009890	ENSDLEG00000009909 #16	ENSDLEG00000009937 #16	ENSDLEG00000009977 ##17	ENSDLEG00000010018	CCDC141 (ENSDLEG00000010172) #18	SESTD1 (ENSDLEG00000010966) #19	ZNF385B (ENSDLEG00000011291) #20	ENSDLEG00000011314	CWC22 (ENSDLEG00000011321) #21	UBE2E3 (ENSDLEG00000011372) #22	ENSDLEG00000011407	ENSDLEG00000011418	ITGA4 (ENSDLEG00000011455) #24	CERKL (ENSDLEG00000011484) #25	NEUROD1 (ENSDLEG00000011541) #26	SSFA2 (ENSDLEG00000011550) #27	PPP1R1C (ENSDLEG00000011622) #28	PDE1A (ENSDLEG00000011637) #30	DNAJC10 (ENSDLEG00000011658) #31	FRZB (ENSDLEG00000011722) #32	NCKAP1 (ENSDLEG00000011764) #33	DUSP19 (ENSDLEG00000011859) #34	NUP35 (ENSDLEG00000011865) #35	ZNF804A (ENSDLEG00000011881) #37	FSIP2 (ENSDLEG00000011905)
Camelidae	ANCESTRAL SPECIES	16	ENSGT00940000162151	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Alpaca	MODERN SPECIES	1888																UBE2E3 (ENSVPAG00000006419) #22
Arabian camel	DUPLICATION
Arabian camel	MODERN SPECIES	31	OSBPL6 (ENSCDRG00005002764) #10	ENSCDRG00005002982	PRKRA (ENSCDRG00005002991) #11	PJVK (ENSCDRG00005003020) #12	FKBP7 (ENSCDRG00005003026) #13	PLEKHA3 (ENSCDRG00005003046) #14	TTN (ENSCDRG00005003286)	ENSCDRG00005005255 #16	ENSCDRG00005005276 ##17	ENSCDRG00005005297 ##17	CCDC141 (ENSCDRG00005005345) #18	SESTD1 (ENSCDRG00005005383) #19	ZNF385B (ENSCDRG00005005488) #20	CWC22 (ENSCDRG00005005576) #21	ENSCDRG00005005656	UBE2E3 (ENSCDRG00005005669) #22	ITGA4 (ENSCDRG00005005689) #24	CERKL (ENSCDRG00005005820) #25	NEUROD1 (ENSCDRG00005006119) #26	ITPRID2 (ENSCDRG00005006142) #27	PPP1R1C (ENSCDRG00005006521) #28	PDE1A (ENSCDRG00005006588) #30	DNAJC10 (ENSCDRG00005006964) #31	FRZB (ENSCDRG00005007115) #32	NCKAP1 (ENSCDRG00005007185) #33	DUSP19 (ENSCDRG00005007946) #34	NUP35 (ENSCDRG00005008035) #35	ZNF804A (ENSCDRG00005008227) #37	FSIP2 (ENSCDRG00005008291)	ZC3H15 (ENSCDRG00005008421)	ITGAV (ENSCDRG00005008520)
Arabian camel	MODERN SPECIES	9	GNB2 (ENSCDRG00005015892)	GIGYF1 (ENSCDRG00005015711)	ENSCDRG00005015691	EPO (ENSCDRG00005015667)	ZAN (ENSCDRG00005015373)	EPHB4 (ENSCDRG00005015268)	SLC12A9 (ENSCDRG00005015165)	TRIP6 (ENSCDRG00005015128)	SRRT (ENSCDRG00005015004)	UFSP1 (ENSCDRG00005014985)	ACHE (ENSCDRG00005014935)	TRIM56 (ENSCDRG00005014926)	SERPINE1 (ENSCDRG00005014882)	AP1S1 (ENSCDRG00005014828)	VGF (ENSCDRG00005014790)	ENSCDRG00005014759 #22	MOGAT3 (ENSCDRG00005014712)	PLOD3 (ENSCDRG00005014592)	ZNHIT1 (ENSCDRG00005013987)	CLDN15 (ENSCDRG00005013908)	FIS1 (ENSCDRG00005013767)	IFT22 (ENSCDRG00005013659)	COL26A1 (ENSCDRG00005013421)	MYL10 (ENSCDRG00005013332)	ENSCDRG00005009413	SH2B2 (ENSCDRG00005008869)	PRKRIP1 (ENSCDRG00005008819)	ORAI2 (ENSCDRG00005008771)	ALKBH4 (ENSCDRG00005008717)	LRWD1 (ENSCDRG00005008568)	ENSCDRG00005008509
Suina	ANCESTRAL SPECIES	3	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00950000183016.E.b.b.a.a.a.a	ENSGT01050000244818.s.a	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Chacoan peccary	MODERN SPECIES	88	RBM45 (ENSCWAG00000001104) #8	OSBPL6 (ENSCWAG00000001227) #10	PRKRA (ENSCWAG00000001459) #11	PJVK (ENSCWAG00000001480) #12	FKBP7 (ENSCWAG00000001502) #13	PLEKHA3 (ENSCWAG00000001517) #14	TTN (ENSCWAG00000002022)	ENSCWAG00000004059 #16	ENSCWAG00000004104 ##17	ENSCWAG00000004147 ##17	ENSCWAG00000004196 #18	SESTD1 (ENSCWAG00000004249) #19	ZNF385B (ENSCWAG00000004359) #20	CWC22 (ENSCWAG00000004517) #21	ENSCWAG00000004563	UBE2E3 (ENSCWAG00000004592) #22	ITGA4 (ENSCWAG00000004627) #24	CERKL (ENSCWAG00000004781) #25	ENSCWAG00000006501 #26	ITPRID2 (ENSCWAG00000006564) #27	PPP1R1C (ENSCWAG00000006703) #28	PDE1A (ENSCWAG00000006822) #30	ENSCWAG00000006975	DNAJC10 (ENSCWAG00000007014) #31	FRZB (ENSCWAG00000007088) #32	NCKAP1 (ENSCWAG00000007126) #33	DUSP19 (ENSCWAG00000007316) #34	NUP35 (ENSCWAG00000007342) #35	ZNF804A (ENSCWAG00000007390) #37
Pig	DUPLICATION
Pig	MODERN SPECIES	6	OSBPL6 (ENSSSCG00000023133) #10	PRKRA (ENSSSCG00000038254) #11	PJVK (ENSSSCG00000015998) #12	FKBP7 (ENSSSCG00000015999) #13	PLEKHA3 (ENSSSCG00000049025) #14	ENSSSCG00000036052	ENSSSCG00000038561 ##17	ENSSSCG00000034677 #16	ENSSSCG00000053021 ##17	ENSSSCG00000042430 ##17	ENSSSCG00000061723	CCDC141 (ENSSSCG00000016002) #18	SESTD1 (ENSSSCG00000016005) #19	ZNF385B (ENSSSCG00000023181) #20	CWC22 (ENSSSCG00000016008) #21	UBE2E3 (ENSSSCG00000033987) #22	ITGA4 (ENSSSCG00000016009) #24	CERKL (ENSSSCG00000016010) #25	NEUROD1 (ENSSSCG00000016011) #26	ITPRID2 (ENSSSCG00000038730) #27	PPP1R1C (ENSSSCG00000056781) #28	PDE1A (ENSSSCG00000023924) #30	ENSSSCG00000048532	ENSSSCG00000043033	DNAJC10 (ENSSSCG00000016017) #31	FRZB (ENSSSCG00000016018) #32	NCKAP1 (ENSSSCG00000016019) #33	DUSP19 (ENSSSCG00000016020) #34	NUP35 (ENSSSCG00000028949) #35	ZNF804A (ENSSSCG00000016022) #37	ENSSSCG00000053121
Pig	MODERN SPECIES	12	OR10K2 (ENSSSCG00000006445)	OR10R2 (ENSSSCG00000035925)	ENSSSCG00000025644	ENSSSCG00000060155	ENSSSCG00000044992	ENSSSCG00000053287	ENSSSCG00000056872	ENSSSCG00000022686	OR10T2 (ENSSSCG00000030145)	CD1E (ENSSSCG00000006450)	CD1B (ENSSSCG00000006452)	ENSSSCG00000030958	CD1D (ENSSSCG00000058723)	SMIM42 (ENSSSCG00000060062)	KIRREL1 (ENSSSCG00000006453)	ENSSSCG00000039068 #22	ENSSSCG00000006455	FCRL1 (ENSSSCG00000006456)	FCRL3 (ENSSSCG00000006457)	FCRL4 (ENSSSCG00000006458)	ENSSSCG00000026210	ENSSSCG00000036622	ENSSSCG00000049524	ENSSSCG00000043115	ETV3 (ENSSSCG00000024970)	ARHGEF11 (ENSSSCG00000006461)	LRRC71 (ENSSSCG00000006462)	PEAR1 (ENSSSCG00000006463)	NTRK1 (ENSSSCG00000006464)	INSRR (ENSSSCG00000006465)	SH2D2A (ENSSSCG00000006466)
Laurasiatheria_b	ANCESTRAL SPECIES	16	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Carnivora	ANCESTRAL SPECIES	17	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Caniformia	ANCESTRAL SPECIES	14	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Canidae	ANCESTRAL SPECIES	45	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.L	ENSGT01100000263523.B	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.j #25	ENSGT00940000157578.i #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Red fox	MODERN SPECIES	151																UBE2E3 (ENSVVUG00000016629) #22	ITGA4 (ENSVVUG00000016640) #24	CERKL (ENSVVUG00000016658) #25	ENSVVUG00000016675	ITPRID2 (ENSVVUG00000016680) #27	ENSVVUG00000016692	PDE1A (ENSVVUG00000016703) #30	DNAJC10 (ENSVVUG00000016752) #31	ENSVVUG00000016769	FRZB (ENSVVUG00000016771) #32	NCKAP1 (ENSVVUG00000016781) #33	DUSP19 (ENSVVUG00000016825) #34	NUP35 (ENSVVUG00000016832) #35	ENSVVUG00000016862 #37	FSIP2 (ENSVVUG00000016889)	ZC3H15 (ENSVVUG00000016921)
Canis_lupus	ANCESTRAL SPECIES	39	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.L	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.j #25	ENSGT00940000157578.i #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Dingo	MODERN SPECIES	339	OSBPL6 (ENSCAFG00020007025) #10	ENSCAFG00020007071 #11	PJVK (ENSCAFG00020007088) #12	FKBP7 (ENSCAFG00020007095) #13	PLEKHA3 (ENSCAFG00020007100) #14	ENSCAFG00020007110	ENSCAFG00020007118 #16	ENSCAFG00020007129 ##17	ENSCAFG00020007141 ##17	ENSCAFG00020007149	CCDC141 (ENSCAFG00020007161) #18	SESTD1 (ENSCAFG00020007193) #19	ZNF385B (ENSCAFG00020007213) #20	ENSCAFG00020007217	CWC22 (ENSCAFG00020007223) #21	UBE2E3 (ENSCAFG00020007421) #22	ITGA4 (ENSCAFG00020007432) #24	ENSCAFG00020007564 #25	ENSCAFG00020007594 #25	ITPRID2 (ENSCAFG00020007649) #27	PPP1R1C (ENSCAFG00020008182) #28	PDE1A (ENSCAFG00020008192) #30	DNAJC10 (ENSCAFG00020008336) #31	FRZB (ENSCAFG00020008368) #32	NCKAP1 (ENSCAFG00020008372) #33	DUSP19 (ENSCAFG00020008400) #34	ENSCAFG00020008404	NUP35 (ENSCAFG00020008408) #35	ZNF804A (ENSCAFG00020008421) #37	FSIP2 (ENSCAFG00020008437)	ZC3H15 (ENSCAFG00020008457)
Dog	MODERN SPECIES	29	ENSCAFG00845020768 #7	RBM45 (ENSCAFG00845020808) #8	OSBPL6 (ENSCAFG00845021295) #10	PJVK (ENSCAFG00845022256) #12	ENSCAFG00845022360 #11	FKBP7 (ENSCAFG00845022485) #13	PLEKHA3 (ENSCAFG00845022559) #14	TTN (ENSCAFG00845023220)	ENSCAFG00845025563 #16	ENSCAFG00845025741 ##17	ENSCAFG00845025823 ##17	CCDC141 (ENSCAFG00845025967) #18	SESTD1 (ENSCAFG00845026463) #19	ZNF385B (ENSCAFG00845026657) #20	CWC22 (ENSCAFG00845026777) #21	UBE2E3 (ENSCAFG00845026988) #22	ITGA4 (ENSCAFG00845027215) #24	CERKL (ENSCAFG00845027540) #25	ENSCAFG00845014989 #26	ITPRID2 (ENSCAFG00845015103) #27	PPP1R1C (ENSCAFG00845015312) #28	PDE1A (ENSCAFG00845015431) #30	DNAJC10 (ENSCAFG00845015761) #31	FRZB (ENSCAFG00845016004) #32	NCKAP1 (ENSCAFG00845016102) #33	DUSP19 (ENSCAFG00845016242) #34	ENSCAFG00845016301	NUP35 (ENSCAFG00845016341) #35	ENSCAFG00845016423	ENSCAFG00845016901 #37	FSIP2 (ENSCAFG00845017210)
Caniformia_b	ANCESTRAL SPECIES	13	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Ursidae	ANCESTRAL SPECIES	7	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Ursus	ANCESTRAL SPECIES	4	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.g #25	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361	ENSGT00950000183184.a.a
American black bear	DUPLICATION
American black bear	MODERN SPECIES	1089																ENSUAMG00000024161 #22
American black bear	MODERN SPECIES	2599																ENSUAMG00000023872 #22	ENSUAMG00000023874
Polar bear	DUPLICATION
Polar bear	MODERN SPECIES	142	RBM45 (ENSUMAG00000016503) #8	OSBPL6 (ENSUMAG00000016519) #10	PRKRA (ENSUMAG00000016566) #11	PJVK (ENSUMAG00000016572) #12	FKBP7 (ENSUMAG00000016577) #13	PLEKHA3 (ENSUMAG00000016580) #14	ENSUMAG00000016583	ENSUMAG00000016602 #16	ENSUMAG00000016607 ##17	ENSUMAG00000016620	CCDC141 (ENSUMAG00000016645) #18	SESTD1 (ENSUMAG00000016664) #19	ZNF385B (ENSUMAG00000016683) #20	ENSUMAG00000016715	CWC22 (ENSUMAG00000016730) #21	UBE2E3 (ENSUMAG00000016744) #22	ITGA4 (ENSUMAG00000016766) #24	ENSUMAG00000016769 #25	ITPRID2 (ENSUMAG00000016810) #27	PPP1R1C (ENSUMAG00000017053) #28	PDE1A (ENSUMAG00000017058) #30	DNAJC10 (ENSUMAG00000017079) #31	FRZB (ENSUMAG00000017090) #32	NCKAP1 (ENSUMAG00000017092) #33	DUSP19 (ENSUMAG00000017100) #34	NUP35 (ENSUMAG00000017104) #35	ZNF804A (ENSUMAG00000017118) #37	FSIP2 (ENSUMAG00000017138)	ZC3H15 (ENSUMAG00000017161)	ITGAV (ENSUMAG00000017454)	FAM171B (ENSUMAG00000018734)
Polar bear	MODERN SPECIES	413	ENSUMAG00000010161	ARHGAP5 (ENSUMAG00000010158)	NUBPL (ENSUMAG00000010133)	GPR33 (ENSUMAG00000010119)	ENSUMAG00000010115	ENSUMAG00000010111	HEATR5A (ENSUMAG00000007915)	ENSUMAG00000007548	HECTD1 (ENSUMAG00000007523)	AP4S1 (ENSUMAG00000007515)	STRN3 (ENSUMAG00000006765)	COCH (ENSUMAG00000006665)	SCFD1 (ENSUMAG00000006644)	G2E3 (ENSUMAG00000006635)	PRKD1 (ENSUMAG00000005703)	ENSUMAG00000005585 #22	ENSUMAG00000005579
Giant Panda	DUPLICATION
Giant Panda	MODERN SPECIES	11	OSBPL6 (ENSAMEG00000000825) #10	PRKRA (ENSAMEG00000000803) #11	PJVK (ENSAMEG00000000801) #12	FKBP7 (ENSAMEG00000027885) #13	PLEKHA3 (ENSAMEG00000000774) #14	ENSAMEG00000030666 #15	ENSAMEG00000029399	ENSAMEG00000026332 #16	ENSAMEG00000028448 ##17	ENSAMEG00000029868 ##17	ENSAMEG00000029059 #17	CCDC141 (ENSAMEG00000000377) #18	SESTD1 (ENSAMEG00000000338) #19	ZNF385B (ENSAMEG00000000330) #20	CWC22 (ENSAMEG00000011004) #21	UBE2E3 (ENSAMEG00000031089) #22	ITGA4 (ENSAMEG00000003158) #24	CERKL (ENSAMEG00000030905) #25	NEUROD1 (ENSAMEG00000019191) #26	ITPRID2 (ENSAMEG00000003142) #27	PPP1R1C (ENSAMEG00000003139) #28	PDE1A (ENSAMEG00000003066) #30	DNAJC10 (ENSAMEG00000009718) #31	FRZB (ENSAMEG00000001135) #32	NCKAP1 (ENSAMEG00000001139) #33	DUSP19 (ENSAMEG00000001181) #34	ENSAMEG00000030613	NUP35 (ENSAMEG00000001191) #35	ZNF804A (ENSAMEG00000013158) #37	FSIP2 (ENSAMEG00000016868)	ZC3H15 (ENSAMEG00000008314)
Giant Panda	MODERN SPECIES	12	NPAS3 (ENSAMEG00000029238)	AKAP6 (ENSAMEG00000015685)	ARHGAP5 (ENSAMEG00000015709)	NUBPL (ENSAMEG00000015724)	GPR33 (ENSAMEG00000019764)	DTD2 (ENSAMEG00000024284)	HEATR5A (ENSAMEG00000015736)	ENSAMEG00000028378	HECTD1 (ENSAMEG00000015770)	AP4S1 (ENSAMEG00000015823)	STRN3 (ENSAMEG00000015829)	COCH (ENSAMEG00000015859)	SCFD1 (ENSAMEG00000005072)	G2E3 (ENSAMEG00000005054)	PRKD1 (ENSAMEG00000004991)	ENSAMEG00000004988 #22	FOXG1 (ENSAMEG00000025179)	ENSAMEG00000024395	NOVA1 (ENSAMEG00000015330)	STXBP6 (ENSAMEG00000015837)	ENSAMEG00000025225	GZMB (ENSAMEG00000015872)	CTSG (ENSAMEG00000029866)	ENSAMEG00000015886	CMA1 (ENSAMEG00000015898)	SDR39U1 (ENSAMEG00000015912)	KHNYN (ENSAMEG00000015925)	CBLN3 (ENSAMEG00000015930)	NYNRIN (ENSAMEG00000015934)	NFATC4 (ENSAMEG00000015941)	RIPK3 (ENSAMEG00000015957)
Mustelinae	ANCESTRAL SPECIES	21	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
American mink	MODERN SPECIES	153															NACA2 (ENSNVIG00000006961)	UBE2E3 (ENSNVIG00000006975) #22	ITGA4 (ENSNVIG00000007000) #24	CERKL (ENSNVIG00000007094) #25	NEUROD1 (ENSNVIG00000007331) #26	ITPRID2 (ENSNVIG00000007345) #27	PPP1R1C (ENSNVIG00000007472) #28	PDE1A (ENSNVIG00000007533) #30	DJC10 (ENSNVIG00000007710) #31	FRZB (ENSNVIG00000007906) #32	ENSNVIG00000007929	NCKAP1 (ENSNVIG00000007957) #33	DUS19 (ENSNVIG00000008032) #34	ENSNVIG00000008050	NUP53 (ENSNVIG00000008062) #35	ZNF804A (ENSNVIG00000008160) #37
Ferret	MODERN SPECIES	303	PDE11A (ENSMPUG00000003215)	ENSMPUG00000003211 #7	RBM45 (ENSMPUG00000003205) #8	ENSMPUG00000003200	OSBPL6 (ENSMPUG00000003187) #10	PRKRA (ENSMPUG00000003180) #11	PJVK (ENSMPUG00000003160) #12	FKBP7 (ENSMPUG00000003155) #13	PLEKHA3 (ENSMPUG00000003152) #14	TTN (ENSMPUG00000002470)	CCDC141 (ENSMPUG00000002459) #18	SESTD1 (ENSMPUG00000002454) #19	ZNF385B (ENSMPUG00000002440) #20	CWC22 (ENSMPUG00000002432) #21	ENSMPUG00000019110	UBE2E3 (ENSMPUG00000002428) #22	ITGA4 (ENSMPUG00000002308) #24	CERKL (ENSMPUG00000002305) #25	NEUROD1 (ENSMPUG00000019108) #26	ENSMPUG00000002302	ITPRID2 (ENSMPUG00000002296) #27	PPP1R1C (ENSMPUG00000002291) #28	PDE1A (ENSMPUG00000002231) #30	ENSMPUG00000002229	DNAJC10 (ENSMPUG00000002225) #31	FRZB (ENSMPUG00000002222) #32	NCKAP1 (ENSMPUG00000002079) #33	DUSP19 (ENSMPUG00000002068) #34	ENSMPUG00000018790	NUP35 (ENSMPUG00000002063) #35
Felidae	ANCESTRAL SPECIES	15	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558.bb #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Cat	MODERN SPECIES	239	OSBPL6 (ENSFCAG00000012535) #10	PRKRA (ENSFCAG00000031042) #11	PJVK (ENSFCAG00000018124) #12	FKBP7 (ENSFCAG00000012540) #13	PLEKHA3 (ENSFCAG00000025945) #14	TTN (ENSFCAG00000046559)	ENSFCAG00000032293 #16	ENSFCAG00000050241 ##17	ENSFCAG00000046893 ##17	ENSFCAG00000049768 ##17	CCDC141 (ENSFCAG00000024849) #18	SESTD1 (ENSFCAG00000018813) #19	ZNF385B (ENSFCAG00000026511) #20	CWC22 (ENSFCAG00000018982) #21	ENSFCAG00000027880	UBE2E3 (ENSFCAG00000040141) #22	ITGA4 (ENSFCAG00000010843) #24	CERKL (ENSFCAG00000019294) #25	NEUROD1 (ENSFCAG00000004553) #26	ITPRID2 (ENSFCAG00000015527) #27	PPP1R1C (ENSFCAG00000034867) #28	PDE1A (ENSFCAG00000005261) #30	DNAJC10 (ENSFCAG00000026076) #31	FRZB (ENSFCAG00000013630) #32	ENSFCAG00000022558	NCKAP1 (ENSFCAG00000018413) #33	ENSFCAG00000008251	DUSP19 (ENSFCAG00000013631) #34	NUP35 (ENSFCAG00000025636) #35	ZNF804A (ENSFCAG00000023752) #37	FSIP2 (ENSFCAG00000048733)
Panthera	ANCESTRAL SPECIES	9	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558.bb #31	ENSGT00940000160494 #32	ENSGT00390000014814.a.b.a.a.b	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37
Tiger	MODERN SPECIES	189	PDE11A (ENSPTIG00000021590)	RBM45 (ENSPTIG00000021277) #8	OSBPL6 (ENSPTIG00000012838) #10	PRKRA (ENSPTIG00000010369) #11	PJVK (ENSPTIG00000009706) #12	FKBP7 (ENSPTIG00000007245) #13	PLEKHA3 (ENSPTIG00000006680) #14	ENSPTIG00000006348	ENSPTIG00000005794 #16	ENSPTIG00000021356	CCDC141 (ENSPTIG00000020352) #18	SESTD1 (ENSPTIG00000020064) #19	ZNF385B (ENSPTIG00000020003) #20	ENSPTIG00000019448	CWC22 (ENSPTIG00000019139) #21	UBE2E3 (ENSPTIG00000018346) #22	ITGA4 (ENSPTIG00000017681) #24	CERKL (ENSPTIG00000014868) #25	NEUROD1 (ENSPTIG00000005315) #26	ITPRID2 (ENSPTIG00000011065) #27	PPP1R1C (ENSPTIG00000009288) #28	PDE1A (ENSPTIG00000005875) #30	DNAJC10 (ENSPTIG00000021076) #31	FRZB (ENSPTIG00000020588) #32	ENSPTIG00000005018	NCKAP1 (ENSPTIG00000018578) #33	DUSP19 (ENSPTIG00000018097) #34	NUP35 (ENSPTIG00000017299) #35	ZNF804A (ENSPTIG00000014706) #37	ENSPTIG00000013021	ZC3H15 (ENSPTIG00000012514)
Panthera_a	ANCESTRAL SPECIES	6	ENSGT00390000010116.wb	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558.bb #31	ENSGT00940000160494 #32	ENSGT00390000014814.a.b.a.a.b	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00940000155163.b	ENSGT00390000005923 #35	ENSGT00940000160909 #37
leopard	DUPLICATION
leopard	MODERN SPECIES	1	ENSPPRG00000021101	PDE11A (ENSPPRG00000019135)	ENSPPRG00000017216 #7	RBM45 (ENSPPRG00000017073) #8	OSBPL6 (ENSPPRG00000015447) #10	ENSPPRG00000011982 #11	PJVK (ENSPPRG00000011834) #12	FKBP7 (ENSPPRG00000011718) #13	PLEKHA3 (ENSPPRG00000011583) #14	TTN (ENSPPRG00000010584)	ENSPPRG00000003860 #16	CCDC141 (ENSPPRG00000002134) #18	SESTD1 (ENSPPRG00000001855) #19	ZNF385B (ENSPPRG00000001753) #20	CWC22 (ENSPPRG00000001389) #21	UBE2E3 (ENSPPRG00000000816) #22	ITGA4 (ENSPPRG00000022623) #24	CERKL (ENSPPRG00000022833) #25	NEUROD1 (ENSPPRG00000020836) #26	ITPRID2 (ENSPPRG00000023274) #27	PPP1R1C (ENSPPRG00000023675) #28	PDE1A (ENSPPRG00000023941) #30	ENSPPRG00000024185	ENSPPRG00000024265 #31	FRZB (ENSPPRG00000024590) #32	ENSPPRG00000020809 #32	NCKAP1 (ENSPPRG00000024634) #33	ENSPPRG00000020779	DUSP19 (ENSPPRG00000024696) #34	NUP35 (ENSPPRG00000024726) #35	ZNF804A (ENSPPRG00000024777) #37
leopard	MODERN SPECIES	65	SNAPC3 (ENSPPRG00000012176)	PSIP1 (ENSPPRG00000012404)	CCDC171 (ENSPPRG00000012907)	ENSPPRG00000013453	BNC2 (ENSPPRG00000013553)	ENSPPRG00000021053	CNTLN (ENSPPRG00000014202)	SH3GL2 (ENSPPRG00000014326)	ADAMTSL1 (ENSPPRG00000017489)	SAXO1 (ENSPPRG00000018241)	RRAGA (ENSPPRG00000021236)	HAUS6 (ENSPPRG00000021239)	PLIN2 (ENSPPRG00000021465)	DENND4C (ENSPPRG00000023874)	RPS6 (ENSPPRG00000023571)	ENSPPRG00000023215 #22	ACER2 (ENSPPRG00000023178)	SLC24A2 (ENSPPRG00000000154)	MLLT3 (ENSPPRG00000000472)	ENSPPRG00000000619	FOCAD (ENSPPRG00000001545)	HACD4 (ENSPPRG00000001657)	IFNB1 (ENSPPRG00000021934)	ENSPPRG00000021961	ENSPPRG00000002656	ENSPPRG00000003115	ENSPPRG00000003827
lion	DUPLICATION
lion	MODERN SPECIES	8	AGPS (ENSPLOG00000022055)	ENSPLOG00000022046	ENSPLOG00000022045	PDE11A (ENSPLOG00000022012)	RBM45 (ENSPLOG00000021986) #8	OSBPL6 (ENSPLOG00000021601) #10	PRKRA (ENSPLOG00000021458) #11	PJVK (ENSPLOG00000021374) #12	FKBP7 (ENSPLOG00000021347) #13	PLEKHA3 (ENSPLOG00000021313) #14	ENSPLOG00000007181 #16	CCDC141 (ENSPLOG00000004750) #18	SESTD1 (ENSPLOG00000004731) #19	ZNF385B (ENSPLOG00000004710) #20	CWC22 (ENSPLOG00000004688) #21	UBE2E3 (ENSPLOG00000021455) #22	ITGA4 (ENSPLOG00000021423) #24	ENSPLOG00000021354 #25	ENSPLOG00000021328 #25	NEUROD1 (ENSPLOG00000021243) #26	ITPRID2 (ENSPLOG00000021174) #27	PPP1R1C (ENSPLOG00000021086) #28	PDE1A (ENSPLOG00000020874) #30	DNAJC10 (ENSPLOG00000020703) #31	FRZB (ENSPLOG00000020608) #32	ENSPLOG00000020583	NCKAP1 (ENSPLOG00000020338) #33	DUSP19 (ENSPLOG00000020195) #34	ENSPLOG00000020171	NUP35 (ENSPLOG00000020118) #35	ZNF804A (ENSPLOG00000020072) #37
lion	MODERN SPECIES	13	TTC39B (ENSPLOG00000006788)	SNAPC3 (ENSPLOG00000006993)	PSIP1 (ENSPLOG00000007038)	CCDC171 (ENSPLOG00000007150)	BNC2 (ENSPLOG00000007214)	ENSPLOG00000007241	CNTLN (ENSPLOG00000007270)	SH3GL2 (ENSPLOG00000007300)	ADAMTSL1 (ENSPLOG00000007398)	SAXO1 (ENSPLOG00000007710)	RRAGA (ENSPLOG00000007764)	HAUS6 (ENSPLOG00000007785)	PLIN2 (ENSPLOG00000007840)	DENND4C (ENSPLOG00000007889)	RPS6 (ENSPLOG00000007999)	ENSPLOG00000008039 #22	ACER2 (ENSPLOG00000008065)	SLC24A2 (ENSPLOG00000008118)	MLLT3 (ENSPLOG00000008272)	FOCAD (ENSPLOG00000008398)	HACD4 (ENSPLOG00000008580)	ENSPLOG00000008634	ENSPLOG00000008664	ENSPLOG00000008697	ENSPLOG00000008712	PRXL2C (ENSPLOG00000008735)	ENSPLOG00000008892	HABP4 (ENSPLOG00000009107)	ZNF367 (ENSPLOG00000009156)	SLC35D2 (ENSPLOG00000009228)	HSD17B3 (ENSPLOG00000009419)
Laurasiatheria_c	ANCESTRAL SPECIES	18	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Chiroptera	ANCESTRAL SPECIES	11	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Megabat	MODERN SPECIES	6283																UBE2E3 (ENSPVAG00000001077) #22
Microchiroptera	ANCESTRAL SPECIES	15	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Microbat	MODERN SPECIES	942	OSBPL6 (ENSMLUG00000005787) #10	ENSMLUG00000022423	ENSMLUG00000005810 #11	PJVK (ENSMLUG00000005814) #12	FKBP7 (ENSMLUG00000005816) #13	PLEKHA3 (ENSMLUG00000005823) #14	ENSMLUG00000024664 ##17	TTN (ENSMLUG00000005832)	ENSMLUG00000005976	ENSMLUG00000027856 #18	SESTD1 (ENSMLUG00000005032) #19	ZNF385B (ENSMLUG00000013424) #20	ENSMLUG00000013437 #21	ENSMLUG00000030576	ENSMLUG00000024453	UBE2E3 (ENSMLUG00000014945) #22	ITGA4 (ENSMLUG00000014215) #24	ENSMLUG00000014227 #25	NEUROD1 (ENSMLUG00000025259) #26	ITPRID2 (ENSMLUG00000011724) #27	ENSMLUG00000009929 #28	PDE1A (ENSMLUG00000009939) #30	DNAJC10 (ENSMLUG00000000680) #31	ENSMLUG00000027215	ENSMLUG00000030095 #32	NCKAP1 (ENSMLUG00000011345) #33	DUSP19 (ENSMLUG00000013149) #34	NUP35 (ENSMLUG00000013154) #35	ENSMLUG00000009638	PDCD1 (ENSMLUG00000009623)	NEU4 (ENSMLUG00000003374)
Greater horseshoe bat	DUPLICATION
Greater horseshoe bat	MODERN SPECIES	14	VPS45 (ENSRFEG00010019952)	PLEKHO1 (ENSRFEG00010020048)	ANP32E (ENSRFEG00010020103)	CA14 (ENSRFEG00010020216)	APH1A (ENSRFEG00010020244)	C1orf54 (ENSRFEG00010020321)	CIART (ENSRFEG00010020371)	ENSRFEG00010020409	PRPF3 (ENSRFEG00010020436)	RPRD2 (ENSRFEG00010020482)	TARS2 (ENSRFEG00010020572)	ECM1 (ENSRFEG00010020676)	ADAMTSL4 (ENSRFEG00010020724)	MCL1 (ENSRFEG00010020768)	ENSA (ENSRFEG00010020814)	ENSRFEG00010020865 #22	GOLPH3L (ENSRFEG00010020873)	HORMAD1 (ENSRFEG00010020903)	CTSS (ENSRFEG00010021017)	CTSK (ENSRFEG00010021054)	ENSRFEG00010021080	ARNT (ENSRFEG00010021097)	CTXND2 (ENSRFEG00010021199)	SETDB1 (ENSRFEG00010021209)	CERS2 (ENSRFEG00010021239)	ANXA9 (ENSRFEG00010021262)	MINDY1 (ENSRFEG00010021279)	PRUNE1 (ENSRFEG00010021296)	BNIPL (ENSRFEG00010021309)	C1orf56 (ENSRFEG00010021323)	ENSRFEG00010021328
Greater horseshoe bat	MODERN SPECIES	26	ENSRFEG00010022157	ENSRFEG00010022156	PDE11A (ENSRFEG00010022154)	ENSRFEG00010022153 #7	RBM45 (ENSRFEG00010022152) #8	OSBPL6 (ENSRFEG00010022151) #10	PRKRA (ENSRFEG00010022150) #11	DFNB59 (ENSRFEG00010022149) #12	FKBP7 (ENSRFEG00010022148) #13	PLEKHA3 (ENSRFEG00010022147) #14	ENSRFEG00010020094 ##17	CCDC141 (ENSRFEG00010018317) #18	SESTD1 (ENSRFEG00010018265) #19	ZNF385B (ENSRFEG00010018087) #20	CWC22 (ENSRFEG00010018027) #21	UBE2E3 (ENSRFEG00010017987) #22	ITGA4 (ENSRFEG00010017895) #24	CERKL (ENSRFEG00010017416) #25	NEUROD1 (ENSRFEG00010017386) #26	ITPRID2 (ENSRFEG00010016967) #27	PPP1R1C (ENSRFEG00010016876) #28	PDE1A (ENSRFEG00010016512) #30	DNAJC10 (ENSRFEG00010016359) #31	FRZB (ENSRFEG00010016272) #32	NCKAP1 (ENSRFEG00010015402) #33	DUSP19 (ENSRFEG00010015325) #34	NUP35 (ENSRFEG00010015209) #35	ENSRFEG00010015146	ZNF804A (ENSRFEG00010015054) #37	ENSRFEG00010014769	ENSRFEG00010014673
Equus	ANCESTRAL SPECIES	18	ENSGT00940000156112	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00900000142191	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Donkey	MODERN SPECIES	24	PDE11A (ENSEASG00005022489)	ENSEASG00005026887 #7	RBM45 (ENSEASG00005022475) #8	OSBPL6 (ENSEASG00005022455) #10	PRKRA (ENSEASG00005022436) #11	PJVK (ENSEASG00005022430) #12	FKBP7 (ENSEASG00005022426) #13	PLEKHA3 (ENSEASG00005022419) #14	ENSEASG00005024821	ENSEASG00005036015 ##17	TTN (ENSEASG00005024097)	CCDC141 (ENSEASG00005022349) #18	SESTD1 (ENSEASG00005022309) #19	ZNF385B (ENSEASG00005022300) #20	CWC22 (ENSEASG00005022287) #21	UBE2E3 (ENSEASG00005022279) #22	ITGA4 (ENSEASG00005022220) #24	CERKL (ENSEASG00005022157) #25	NEUROD1 (ENSEASG00005022155) #26	ITPRID2 (ENSEASG00005022146) #27	PPP1R1C (ENSEASG00005022142) #28	PDE1A (ENSEASG00005022135) #30	ENSEASG00005022130	DNAJC10 (ENSEASG00005022124) #31	FRZB (ENSEASG00005022120) #32	NCKAP1 (ENSEASG00005022110) #33	DUSP19 (ENSEASG00005036068) #34	NUP35 (ENSEASG00005022100) #35	ZNF804A (ENSEASG00005022092) #37	FSIP2 (ENSEASG00005022084)	ZC3H15 (ENSEASG00005022074)
Horse	MODERN SPECIES	9	ENSECAG00000057854	CYCT (ENSECAG00000016170) #7	RBM45 (ENSECAG00000017129) #8	OSBPL6 (ENSECAG00000020078) #10	PRKRA (ENSECAG00000024263) #11	PJVK (ENSECAG00000007310) #12	FKBP7 (ENSECAG00000008092) #13	PLEKHA3 (ENSECAG00000010715) #14	TTN (ENSECAG00000042020)	CCDC141 (ENSECAG00000007805) #18	SESTD1 (ENSECAG00000011753) #19	ZNF385B (ENSECAG00000000538) #20	CWC22 (ENSECAG00000010769) #21	ENSECAG00000057506	ENSECAG00000052690	UBE2E3 (ENSECAG00000007233) #22	ENSECAG00000045626	ITGA4 (ENSECAG00000010500) #24	CERKL (ENSECAG00000022850) #25	NEUROD1 (ENSECAG00000028766) #26	ITPRID2 (ENSECAG00000012220) #27	PPP1R1C (ENSECAG00000022338) #28	PDE1A (ENSECAG00000022509) #30	ENSECAG00000049792	ENSECAG00000053763	DNAJC10 (ENSECAG00000010084) #31	FRZB (ENSECAG00000017132) #32	NCKAP1 (ENSECAG00000021389) #33	DUSP19 (ENSECAG00000020886) #34	NUP35 (ENSECAG00000003968) #35	ZNF804A (ENSECAG00000011071) #37
Eulipotyphla	ANCESTRAL SPECIES																	ENSGT00940000155392 #22
Common shrew	MODERN SPECIES	5072																UBE2E3 (ENSSARG00000009655) #22
Euarchontoglires	ANCESTRAL SPECIES	14	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Euarchontoglires_A	ANCESTRAL SPECIES	13	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000167860
Tree shrew	MODERN SPECIES	3688																UBE2E3 (ENSTBEG00000009932) #22
Glires	ANCESTRAL SPECIES	14	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Rodentia	ANCESTRAL SPECIES	14	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.e.b #21	ENSGT00390000005421	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Rodentia_A	ANCESTRAL SPECIES	13	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Sciuridae	ANCESTRAL SPECIES	10	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Eurasian red squirrel	DUPLICATION
Eurasian red squirrel	MODERN SPECIES	12	PDE11A (ENSSVLG00005004050)	ENSSVLG00005004113 #7	RBM45 (ENSSVLG00005004137) #8	OSBPL6 (ENSSVLG00005004465) #10	PRKRA (ENSSVLG00005005027) #11	PJVK (ENSSVLG00005005095) #12	ENSSVLG00005005163	FKBP7 (ENSSVLG00005005181) #13	PLEKHA3 (ENSSVLG00005005206) #14	ENSSVLG00005008368 ##17	CCDC141 (ENSSVLG00005020180) #18	SESTD1 (ENSSVLG00005020505) #19	ZNF385B (ENSSVLG00005020575) #20	CWC22 (ENSSVLG00005020797) #21	ENSSVLG00005020875	UBE2E3 (ENSSVLG00005020907) #22	ITGA4 (ENSSVLG00005021071) #24	ENSSVLG00005021354 #25	ENSSVLG00005021492 #25	NEUROD1 (ENSSVLG00005021545) #26	ENSSVLG00005021646 #27	PPP1R1C (ENSSVLG00005021961) #28	PDE1A (ENSSVLG00005022174) #30	ENSSVLG00005022726	DNAJC10 (ENSSVLG00005022791) #31	FRZB (ENSSVLG00005022871) #32	NCKAP1 (ENSSVLG00005023067) #33	ENSSVLG00005023310 #34	NUP35 (ENSSVLG00005023363) #35	ENSSVLG00005023415	ENSSVLG00005023439
Eurasian red squirrel	MODERN SPECIES	6	ENSSVLG00005024201	VLDLR (ENSSVLG00005024232)	KCNV2 (ENSSVLG00005024318)	PUM3 (ENSSVLG00005024338)	ENSSVLG00005024401	RFX3 (ENSSVLG00005024420)	GLIS3 (ENSSVLG00005024543)	SLC1A1 (ENSSVLG00005024569)	SPATA6L (ENSSVLG00005024615)	PLPP6 (ENSSVLG00005024689)	CDC37L1 (ENSSVLG00005024699)	ENSSVLG00005024721	RCL1 (ENSSVLG00005024752)	JAK2 (ENSSVLG00005024808)	INSL6 (ENSSVLG00005024849)	ENSSVLG00005024871 #22	PLGRKT (ENSSVLG00005024908)	CD274 (ENSSVLG00005024930)	PDCD1LG2 (ENSSVLG00005024955)	RIC1 (ENSSVLG00005025040)	ERMP1 (ENSSVLG00005025117)	MLANA (ENSSVLG00005025137)	KIAA2026 (ENSSVLG00005025155)	ENSSVLG00005025173	ENSSVLG00005025185	ENSSVLG00005025194	IL33 (ENSSVLG00005025230)	ENSSVLG00005025276	ENSSVLG00005025282	TPD52L3 (ENSSVLG00005025288)	UHRF2 (ENSSVLG00005025301)
Marmotini	ANCESTRAL SPECIES	2	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Alpin marmot	DUPLICATION
Alpin marmot	MODERN SPECIES	7	ADAL (ENSMMMG00000018830)	LCMT2 (ENSMMMG00000018863)	TGM7 (ENSMMMG00000018868)	TGM5 (ENSMMMG00000018903)	EPB42 (ENSMMMG00000018914)	CCNDBP1 (ENSMMMG00000018926)	TMEM62 (ENSMMMG00000018944)	UBR1 (ENSMMMG00000018995)	TTBK2 (ENSMMMG00000019017)	CDAN1 (ENSMMMG00000019058)	ENSMMMG00000019240	ENSMMMG00000019261	HAUS2 (ENSMMMG00000019271)	LRRC57 (ENSMMMG00000019283)	SNAP23 (ENSMMMG00000019308)	ENSMMMG00000019319 #22	ZNF106 (ENSMMMG00000019332)	CAPN3 (ENSMMMG00000019416)	GANC (ENSMMMG00000019671)	TMEM87A (ENSMMMG00000019693)	VPS39 (ENSMMMG00000019741)	PLA2G4F (ENSMMMG00000019798)	ENSMMMG00000019808	PLA2G4D (ENSMMMG00000019810)	PLA2G4E (ENSMMMG00000019838)	EHD4 (ENSMMMG00000019857)	ENSMMMG00000019859	ENSMMMG00000019865	PLA2G4B (ENSMMMG00000019946)	JMJD7 (ENSMMMG00000019970)	MAPKBP1 (ENSMMMG00000019985)
Alpin marmot	MODERN SPECIES	8	RBM45 (ENSMMMG00000006272) #8	OSBPL6 (ENSMMMG00000006453) #10	PRKRA (ENSMMMG00000006678) #11	PJVK (ENSMMMG00000006691) #12	FKBP7 (ENSMMMG00000006701) #13	PLEKHA3 (ENSMMMG00000006710) #14	ENSMMMG00000006717 #15	ENSMMMG00000006724	ENSMMMG00000006744 #16	ENSMMMG00000006759 ##17	ENSMMMG00000006770	CCDC141 (ENSMMMG00000006792) #18	SESTD1 (ENSMMMG00000006844) #19	ZNF385B (ENSMMMG00000006885) #20	CWC22 (ENSMMMG00000007024) #21	UBE2E3 (ENSMMMG00000007195) #22	ITGA4 (ENSMMMG00000007234) #24	NEUROD1 (ENSMMMG00000008141) #26	ITPRID2 (ENSMMMG00000008161) #27	PPP1R1C (ENSMMMG00000008307) #28	PDE1A (ENSMMMG00000008326) #30	ENSMMMG00000008461 #31	ENSMMMG00000008493	FRZB (ENSMMMG00000008505) #32	NCKAP1 (ENSMMMG00000008514) #33	DUSP19 (ENSMMMG00000008569) #34	NUP35 (ENSMMMG00000008586) #35	ZNF804A (ENSMMMG00000008611) #37	FSIP2 (ENSMMMG00000008640)	ZC3H15 (ENSMMMG00000008693)	ITGAV (ENSMMMG00000008706)
Marmotini_b	ANCESTRAL SPECIES	10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.B #17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35
Arctic ground squirrel	MODERN SPECIES	96	RBM45 (ENSUPAG00010006036) #8	OSBPL6 (ENSUPAG00010005891) #10	PRKRA (ENSUPAG00010005881) #11	PJVK (ENSUPAG00010005878) #12	FKBP7 (ENSUPAG00010005868) #13	PLEKHA3 (ENSUPAG00010005864) #14	ENSUPAG00010005857 #15	ENSUPAG00010005854	ENSUPAG00010005849 #16	ENSUPAG00010005845 ##17	ENSUPAG00010005828 #17	CCDC141 (ENSUPAG00010005807) #18	SESTD1 (ENSUPAG00010005786) #19	ZNF385B (ENSUPAG00010005756) #20	CWC22 (ENSUPAG00010005695) #21	UBE2E3 (ENSUPAG00010005683) #22	ENSUPAG00010005673	ITGA4 (ENSUPAG00010005643) #24	NEUROD1 (ENSUPAG00010005612) #26	ITPRID2 (ENSUPAG00010004992) #27	PPP1R1C (ENSUPAG00010004979) #28	PDE1A (ENSUPAG00010004927) #30	DNAJC10 (ENSUPAG00010004900) #31	FRZB (ENSUPAG00010004895) #32	NCKAP1 (ENSUPAG00010004777) #33	DUSP19 (ENSUPAG00010004765) #34	NUP35 (ENSUPAG00010004759) #35
Squirrel	MODERN SPECIES	109	OSBPL6 (ENSSTOG00000006092) #10	PRKRA (ENSSTOG00000006156) #11	PJVK (ENSSTOG00000028411) #12	FKBP7 (ENSSTOG00000006176) #13	PLEKHA3 (ENSSTOG00000006191) #14	ENSSTOG00000006208 #15	ENSSTOG00000032899	ENSSTOG00000032305	ENSSTOG00000033165	ENSSTOG00000034976 #16	ENSSTOG00000030724	CCDC141 (ENSSTOG00000006896) #18	SESTD1 (ENSSTOG00000010529) #19	ZNF385B (ENSSTOG00000009646) #20	CWC22 (ENSSTOG00000009788) #21	UBE2E3 (ENSSTOG00000029106) #22	ITGA4 (ENSSTOG00000009849) #24	CERKL (ENSSTOG00000009874) #25	NEUROD1 (ENSSTOG00000019627) #26	ITPRID2 (ENSSTOG00000000562) #27	PPP1R1C (ENSSTOG00000033938) #28	PDE1A (ENSSTOG00000000575) #30	DNAJC10 (ENSSTOG00000020629) #31	FRZB (ENSSTOG00000000687) #32	NCKAP1 (ENSSTOG00000000691) #33	DUSP19 (ENSSTOG00000000708) #34	NUP35 (ENSSTOG00000000711) #35
Hystricomorpha	ANCESTRAL SPECIES	20	ENSGT00390000010116	ENSGT00940000162151	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Naked mole-rat female	DUPLICATION
Naked mole-rat female	MODERN SPECIES	22	ENSHGLG00000045276	ENSHGLG00000040220	ENSHGLG00000003065 #10	ENSHGLG00000010663 #11	PJVK (ENSHGLG00000011003) #12	FKBP7 (ENSHGLG00000019268) #13	ENSHGLG00000018641 #14	TTN (ENSHGLG00000036835)	CCDC141 (ENSHGLG00000002888) #18	SESTD1 (ENSHGLG00000003644) #19	ENSHGLG00000020829	ZNF385B (ENSHGLG00000004054) #20	ENSHGLG00000020480	ENSHGLG00000034152	CWC22 (ENSHGLG00000005692) #21	UBE2E3 (ENSHGLG00000038435) #22	ITGA4 (ENSHGLG00000002811) #24	ENSHGLG00000003007 #25	NEUROD1 (ENSHGLG00000003374) #26	ITPRID2 (ENSHGLG00000004022) #27	PPP1R1C (ENSHGLG00000035196) #28	ENSHGLG00000018601 #30	ENSHGLG00000045205	ENSHGLG00000037482	ENSHGLG00000050584	ENSHGLG00000013230 #35	ENSHGLG00000012563 #34	NCKAP1 (ENSHGLG00000012280) #33	FRZB (ENSHGLG00000011729) #32	ENSHGLG00000009430 #31	ENSHGLG00000001353
Naked mole-rat female	MODERN SPECIES	5	ENSHGLG00000035349	SNX13 (ENSHGLG00000018267)	PRPS1L1 (ENSHGLG00000021217)	HDAC9 (ENSHGLG00000019023)	ENSHGLG00000033404	FERD3L (ENSHGLG00000036051)	POLR1F (ENSHGLG00000010976)	TMEM196 (ENSHGLG00000035074)	ENSHGLG00000040956	MACC1 (ENSHGLG00000005625)	ITGB8 (ENSHGLG00000009109)	ENSHGLG00000007430	SP8 (ENSHGLG00000041939)	SP4 (ENSHGLG00000014842)	DNAH11 (ENSHGLG00000014062)	ENSHGLG00000043520 #22	CDCA7L (ENSHGLG00000005237)	RAPGEF5 (ENSHGLG00000013551)	ENSHGLG00000020692	ENSHGLG00000020842	ENSHGLG00000007816	TOMM7 (ENSHGLG00000006840)	ENSHGLG00000045090	ENSHGLG00000016355	ENSHGLG00000016313	ENSHGLG00000016251	ENSHGLG00000033596	ENSHGLG00000014502	ENSHGLG00000039502	GPNMB (ENSHGLG00000014974)	MALSU1 (ENSHGLG00000014820)
Hystricomorpha_a	ANCESTRAL SPECIES	17	ENSGT00390000010116	ENSGT00940000162151	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Guinea pig	MODERN SPECIES	3	RBM45 (ENSCPOG00000000684) #8	OSBPL6 (ENSCPOG00000002816) #10	ENSCPOG00000003900 #11	PJVK (ENSCPOG00000037882) #12	FKBP7 (ENSCPOG00000037159) #13	PLEKHA3 (ENSCPOG00000003906) #14	ENSCPOG00000036479 #15	ENSCPOG00000034673	ENSCPOG00000038729	ENSCPOG00000030784	ENSCPOG00000032370	CCDC141 (ENSCPOG00000003955) #18	ENSCPOG00000025835 #19	ZNF385B (ENSCPOG00000014985) #20	ENSCPOG00000007492 #21	UBE2E3 (ENSCPOG00000006996) #22	ITGA4 (ENSCPOG00000009479) #24	ENSCPOG00000009493 #25	NEUROD1 (ENSCPOG00000025248) #26	ENSCPOG00000031598	ITPRID2 (ENSCPOG00000025723) #27	PPP1R1C (ENSCPOG00000001191) #28	PDE1A (ENSCPOG00000004164) #30	DNAJC10 (ENSCPOG00000012956) #31	FRZB (ENSCPOG00000015013) #32	NCKAP1 (ENSCPOG00000011890) #33	DUSP19 (ENSCPOG00000035035) #34	NUP35 (ENSCPOG00000011906) #35	ENSCPOG00000034399	ZNF804A (ENSCPOG00000007581) #37	ZC3H15 (ENSCPOG00000012965)
Hystricomorpha_b	ANCESTRAL SPECIES	24	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00920000150542	ENSGT00900000143154	ENSGT00900000143159	ENSGT01100000263523.B	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Long-tailed chinchilla	MODERN SPECIES	110	RBM45 (ENSCLAG00000015215) #8	OSBPL6 (ENSCLAG00000011433) #10	PJVK (ENSCLAG00000010713) #12	PRKRA (ENSCLAG00000010338) #11	PLEKHA3 (ENSCLAG00000014135) #14	ENSCLAG00000016023 #15	ENSCLAG00000015650	ENSCLAG00000015797	ENSCLAG00000014023	ENSCLAG00000015984	ENSCLAG00000016407	CCDC141 (ENSCLAG00000014817) #18	SESTD1 (ENSCLAG00000011294) #19	ZNF385B (ENSCLAG00000014955) #20	CWC22 (ENSCLAG00000011118) #21	UBE2E3 (ENSCLAG00000013235) #22	ITGA4 (ENSCLAG00000011154) #24	ENSCLAG00000016232 #25	NEUROD1 (ENSCLAG00000016796) #26	ITPRID2 (ENSCLAG00000014062) #27	PPP1R1C (ENSCLAG00000013643) #28	PDE1A (ENSCLAG00000012535) #30	DNAJC10 (ENSCLAG00000015976) #31	FRZB (ENSCLAG00000012907) #32	NCKAP1 (ENSCLAG00000016496) #33	DUSP19 (ENSCLAG00000016586) #34	NUP35 (ENSCLAG00000012559) #35	FSIP2 (ENSCLAG00000013747)	ZC3H15 (ENSCLAG00000016439)	ITGAV (ENSCLAG00000015669)	FAM171B (ENSCLAG00000014446)
Degu	DUPLICATION
Degu	MODERN SPECIES	66																UBE2E3 (ENSODEG00000012934) #22	ITGA4 (ENSODEG00000011915) #24	ENSODEG00000012379	CERKL (ENSODEG00000012012) #25	NEUROD1 (ENSODEG00000019934) #26	ITPRID2 (ENSODEG00000011169) #27	PPP1R1C (ENSODEG00000012042) #28	PDE1A (ENSODEG00000011693) #30	DNAJC10 (ENSODEG00000011257) #31	FRZB (ENSODEG00000011697) #32	NCKAP1 (ENSODEG00000012291) #33	DUSP19 (ENSODEG00000012741) #34	ENSODEG00000011202 #35	ENSODEG00000011356	ENSODEG00000010656	ZNF804A (ENSODEG00000011236) #37
Degu	MODERN SPECIES	266												KRTAP11-1 (ENSODEG00000018872)	TIAM1 (ENSODEG00000002827)	ENSODEG00000002788	SCAF4 (ENSODEG00000002718)	ENSODEG00000002680 #22	HUNK (ENSODEG00000002662)	MIS18A (ENSODEG00000002641)	URB1 (ENSODEG00000002587)	ENSODEG00000002530	EVA1C (ENSODEG00000002480)	ENSODEG00000002448	ENSODEG00000002435	SYNJ1 (ENSODEG00000002409)	PAXBP1 (ENSODEG00000002385)	C21orf62 (ENSODEG00000002365)	OLIG2 (ENSODEG00000018811)	OLIG1 (ENSODEG00000019062)	IL10RB (ENSODEG00000002346)	IFNGR2 (ENSODEG00000003762)	TMEM50B (ENSODEG00000003748)
Degu	MODERN SPECIES	44	SLC39A6 (ENSODEG00000018391)	RPRD1A (ENSODEG00000018331)	ENSODEG00000018309	GALNT1 (ENSODEG00000018395)	ENSODEG00000020532	ENSODEG00000018436	ENSODEG00000018453	ENSODEG00000018420	ENSODEG00000020539	ZNF24 (ENSODEG00000018328)	ENSODEG00000018345	ENSODEG00000018301	ZNF397 (ENSODEG00000018455)	MAPRE2 (ENSODEG00000018430)	DTNA (ENSODEG00000018476)	ENSODEG00000018326 #22	NOL4 (ENSODEG00000018414)	ASXL3 (ENSODEG00000018431)	ENSODEG00000020529	KLHL14 (ENSODEG00000018307)	ENSODEG00000018292	GAREM1 (ENSODEG00000018355)	MEP1B (ENSODEG00000018454)	ENSODEG00000018452	ENSODEG00000018406	ENSODEG00000018411	B4GALT6 (ENSODEG00000018324)	TTR (ENSODEG00000018347)	ENSODEG00000018312	DSG3 (ENSODEG00000018316)	DSG4 (ENSODEG00000018468)
Degu	MODERN SPECIES	43																ENSODEG00000013802 #22	ENSODEG00000013478	ENSODEG00000013159	MAGEL2 (ENSODEG00000014234)	Chrna7 (ENSODEG00000013998)	OTUD7A (ENSODEG00000013975)	ENSODEG00000013811	ENSODEG00000013964	ENSODEG00000014086	ENSODEG00000014974	ENSODEG00000013732	FAN1 (ENSODEG00000013994)	ENSODEG00000013751	MCEE (ENSODEG00000014489)	APBA2 (ENSODEG00000015323)	ENTREP2 (ENSODEG00000013447)
Rodentia_B	ANCESTRAL SPECIES	12	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.A	ENSGT01100000263523.B	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.e.a #21	ENSGT00390000005421	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Kangaroo rat	MODERN SPECIES	324	ENSDORG00000023150	Cyct (ENSDORG00000004101) #7	Rbm45 (ENSDORG00000015831) #8	Osbpl6 (ENSDORG00000001912) #10	Prkra (ENSDORG00000013338) #11	Pjvk (ENSDORG00000013339) #12	Fkbp7 (ENSDORG00000013340) #13	Plekha3 (ENSDORG00000015344) #14	ENSDORG00000029166 #15	ENSDORG00000029701	ENSDORG00000027337 #18	Sestd1 (ENSDORG00000012622) #19	Zfp385b (ENSDORG00000011958) #20	ENSDORG00000011483 #21	ENSDORG00000024689	Ube2e3 (ENSDORG00000029942) #22	Itga4 (ENSDORG00000002412) #24	ENSDORG00000002419 #25	Neurod1 (ENSDORG00000023645) #26	Itprid2 (ENSDORG00000011182) #27	Ppp1r1c (ENSDORG00000014390) #28	Pde1a (ENSDORG00000000875) #30	Dnajc10 (ENSDORG00000004387) #31	Frzb (ENSDORG00000002556) #32	Nckap1 (ENSDORG00000008061) #33	Dusp19 (ENSDORG00000015309) #34	Nup35 (ENSDORG00000010458) #35	Zfp804a (ENSDORG00000011876) #37	Fsip2 (ENSDORG00000027688)	ENSDORG00000028289	ENSDORG00000011664
Myomorpha	ANCESTRAL SPECIES	10	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.e.a #21	ENSGT00390000005421	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Lesser Egyptian jerboa	MODERN SPECIES	75	Rbm45 (ENSJJAG00000001312) #8	Osbpl6 (ENSJJAG00000017863) #10	Prkra (ENSJJAG00000013031) #11	Pjvk (ENSJJAG00000012900) #12	Fkbp7 (ENSJJAG00000012221) #13	Plekha3 (ENSJJAG00000021299) #14	ENSJJAG00000015136 #15	ENSJJAG00000009117	ENSJJAG00000002097	ENSJJAG00000002374	ENSJJAG00000020744	ENSJJAG00000023764 #18	Sestd1 (ENSJJAG00000021516) #19	Zfp385b (ENSJJAG00000011065) #20	ENSJJAG00000017012 #21	Ube2e3 (ENSJJAG00000024202) #22	Itga4 (ENSJJAG00000021734) #24	ENSJJAG00000019445 #25	Neurod1 (ENSJJAG00000017656) #26	Itprid2 (ENSJJAG00000017764) #27	Ppp1r1c (ENSJJAG00000004026) #28	Pde1a (ENSJJAG00000010493) #30	Dnajc10 (ENSJJAG00000017845) #31	Frzb (ENSJJAG00000013147) #32	Nckap1 (ENSJJAG00000015103) #33	Dusp19 (ENSJJAG00000012971) #34	ENSJJAG00000016432 #35	Capza1b (ENSJJAG00000008304)	ENSJJAG00000014835	Zfp804a (ENSJJAG00000000470) #37	ENSJJAG00000021088
Muroidea	ANCESTRAL SPECIES	34	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT01100000263523.B	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.e.a #21	ENSGT00390000005421	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Upper Galilee mountains blind mole rat	MODERN SPECIES	585																Ube2e3 (ENSNGAG00000022261) #22	Itga4 (ENSNGAG00000023288) #24	ENSNGAG00000021953 #25	ENSNGAG00000019557 #25	Neurod1 (ENSNGAG00000020214) #26	Itprid2 (ENSNGAG00000011325) #27	Ppp1r1c (ENSNGAG00000022613) #28	Pde1a (ENSNGAG00000024006) #30	ENSNGAG00000023941 #31	Frzb (ENSNGAG00000021785) #32	Nckap1 (ENSNGAG00000013350) #33	Dusp19 (ENSNGAG00000018715) #34	Nup35 (ENSNGAG00000012107) #35	Zfp804a (ENSNGAG00000008125) #37
Muroidea_A	ANCESTRAL SPECIES	2	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263523.B	ENSGT00900000143159	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.e.a.b #21	ENSGT00390000005421	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Murinae	ANCESTRAL SPECIES	1	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.a.a	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Rat	MODERN SPECIES	13	Ttc30a1 (ENSRNOG00000052519)	Ttc30a (ENSRNOG00000069321)	Cyct (ENSRNOG00000024457)	Rbm45 (ENSRNOG00000010595) #8	Osbpl6 (ENSRNOG00000010812) #10	Prkra (ENSRNOG00000011195) #11	Pjvk (ENSRNOG00000038165) #12	Fkbp7 (ENSRNOG00000011758) #13	Plekha3 (ENSRNOG00000011830) #14	Ttn (ENSRNOG00000069271)	Ccdc141 (ENSRNOG00000012580) #18	Sestd1 (ENSRNOG00000012603) #19	Zfp385b (ENSRNOG00000019065) #20	Cwc22 (ENSRNOG00000012651) #21	RGD1564319 (ENSRNOG00000067541)	Ube2e3 (ENSRNOG00000004544) #22	Itga4 (ENSRNOG00000004861) #24	Cerkl (ENSRNOG00000030212) #25	Neurod1 (ENSRNOG00000005609) #26	Itprid2 (ENSRNOG00000005865) #27	Ppp1r1c (ENSRNOG00000024990) #28	Pde1a (ENSRNOG00000054212) #30	Dnajc10 (ENSRNOG00000006803) #31	Frzb (ENSRNOG00000007765) #32	Nckap1 (ENSRNOG00000007518) #33	Dusp19 (ENSRNOG00000008868) #34	Nup35 (ENSRNOG00000009290) #35	LOC102547850 (ENSRNOG00000070077)	Zfp804a (ENSRNOG00000038004) #37	AABR07052692.1 (ENSRNOG00000047487)	Fsip2 (ENSRNOG00000051199)
Mus	ANCESTRAL SPECIES	1	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.a.a	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00550000074794.eb	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Shrew mouse	MODERN SPECIES	16	MGP_PahariEiJ_G0025133	MGP_PahariEiJ_G0025134	Pde11a (MGP_PahariEiJ_G0025135)	Cyct (MGP_PahariEiJ_G0025136) #7	Rbm45 (MGP_PahariEiJ_G0025137) #8	Osbpl6 (MGP_PahariEiJ_G0025138) #10	Prkra (MGP_PahariEiJ_G0025139) #11	Pjvk (MGP_PahariEiJ_G0025140) #12	Fkbp7 (MGP_PahariEiJ_G0025141) #13	Plekha3 (MGP_PahariEiJ_G0025142) #14	MGP_PahariEiJ_G0025143	Ccdc141 (MGP_PahariEiJ_G0025144) #18	Sestd1 (MGP_PahariEiJ_G0025145) #19	Zfp385b (MGP_PahariEiJ_G0025146) #20	MGP_PahariEiJ_G0025147 #21	MGP_PahariEiJ_G0025148 #22	MGP_PahariEiJ_G0025149 #24	MGP_PahariEiJ_G0025150 #25	Neurod1 (MGP_PahariEiJ_G0025151) #26	Itprid2 (MGP_PahariEiJ_G0025152) #27	Ppp1r1c (MGP_PahariEiJ_G0025153) #28	Pde1a (MGP_PahariEiJ_G0025154) #30	Prdx6b (MGP_PahariEiJ_G0025155)	Dnajc10 (MGP_PahariEiJ_G0025156) #31	Frzb (MGP_PahariEiJ_G0025157) #32	Nckap1 (MGP_PahariEiJ_G0025158) #33	Dusp19 (MGP_PahariEiJ_G0025159) #34	MGP_PahariEiJ_G0025160 #35	MGP_PahariEiJ_G0025161 #35	Zfp804a (MGP_PahariEiJ_G0025162) #37	Fsip2 (MGP_PahariEiJ_G0025163)
Mus_A	ANCESTRAL SPECIES		ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.a.a	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00550000074794.eb	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Ryukyu mouse	MODERN SPECIES	11	MGP_CAROLIEiJ_G0023682	Pde11a (MGP_CAROLIEiJ_G0023683)	MGP_CAROLIEiJ_G0023684	Cyct (MGP_CAROLIEiJ_G0023685) #7	Rbm45 (MGP_CAROLIEiJ_G0023686) #8	Osbpl6 (MGP_CAROLIEiJ_G0023687) #10	Prkra (MGP_CAROLIEiJ_G0023688) #11	Pjvk (MGP_CAROLIEiJ_G0023689) #12	Fkbp7 (MGP_CAROLIEiJ_G0023690) #13	Plekha3 (MGP_CAROLIEiJ_G0023691) #14	Ttn (MGP_CAROLIEiJ_G0023692)	Ccdc141 (MGP_CAROLIEiJ_G0023693) #18	Sestd1 (MGP_CAROLIEiJ_G0023694) #19	Zfp385b (MGP_CAROLIEiJ_G0023695) #20	MGP_CAROLIEiJ_G0023696 #21	Ube2e3 (MGP_CAROLIEiJ_G0023697) #22	Itga4 (MGP_CAROLIEiJ_G0023698) #24	Cerkl (MGP_CAROLIEiJ_G0023699) #25	Neurod1 (MGP_CAROLIEiJ_G0023700) #26	Itprid2 (MGP_CAROLIEiJ_G0023701) #27	Ppp1r1c (MGP_CAROLIEiJ_G0023702) #28	Pde1a (MGP_CAROLIEiJ_G0023703) #30	Prdx6b (MGP_CAROLIEiJ_G0023704)	Dnajc10 (MGP_CAROLIEiJ_G0023705) #31	Frzb (MGP_CAROLIEiJ_G0023706) #32	Nckap1 (MGP_CAROLIEiJ_G0023707) #33	Dusp19 (MGP_CAROLIEiJ_G0023708) #34	MGP_CAROLIEiJ_G0023709 #35	MGP_CAROLIEiJ_G0023710 #35	Zfp804a (MGP_CAROLIEiJ_G0023711) #37	Fsip2 (MGP_CAROLIEiJ_G0023712)
Mus_B	ANCESTRAL SPECIES	1	ENSGT00390000010116.y.a.b	ENSGT00390000010116.y.a.a	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f.e #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00550000074794.eb	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Mouse	MODERN SPECIES	11	Ttc30a2 (ENSMUSG00000075272)	Ttc30a1 (ENSMUSG00000075271)	Pde11a (ENSMUSG00000075270)	Cyct (ENSMUSG00000056436) #7	Rbm45 (ENSMUSG00000042369) #8	Osbpl6 (ENSMUSG00000042359) #10	Prkra (ENSMUSG00000002731) #11	Pjvk (ENSMUSG00000075267) #12	Fkbp7 (ENSMUSG00000002732) #13	Plekha3 (ENSMUSG00000002733) #14	Ttn (ENSMUSG00000051747)	Ccdc141 (ENSMUSG00000044033) #18	Sestd1 (ENSMUSG00000042272) #19	Zfp385b (ENSMUSG00000027016) #20	Cwc22 (ENSMUSG00000027014) #21	Ube2e3 (ENSMUSG00000027011) #22	Itga4 (ENSMUSG00000027009) #24	Cerkl (ENSMUSG00000075256) #25	Neurod1 (ENSMUSG00000034701) #26	Itprid2 (ENSMUSG00000027007) #27	Ppp1r1c (ENSMUSG00000034683) #28	Pde1a (ENSMUSG00000059173) #30	Prdx6b (ENSMUSG00000050114)	Dnajc10 (ENSMUSG00000027006) #31	Frzb (ENSMUSG00000027004) #32	Nckap1 (ENSMUSG00000027002) #33	Dusp19 (ENSMUSG00000027001) #34	Nup35 (ENSMUSG00000026999) #35	Zfp804a (ENSMUSG00000070866) #37	Fsip2 (ENSMUSG00000075249)	Zc3h15 (ENSMUSG00000027091)
Mus_C	ANCESTRAL SPECIES		ENSGT00940000156112	ENSGT00390000010116.y.b	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f.e #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00550000074794.eb	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
spretus	MODERN SPECIES	11	Nfe2l2 (MGP_SPRETEiJ_G0024602)	Agps (MGP_SPRETEiJ_G0024603)	MGP_SPRETEiJ_G0024604	Pde11a (MGP_SPRETEiJ_G0024605)	Cyct (MGP_SPRETEiJ_G0024606) #7	Rbm45 (MGP_SPRETEiJ_G0024607) #8	Osbpl6 (MGP_SPRETEiJ_G0024608) #10	Prkra (MGP_SPRETEiJ_G0024609) #11	Pjvk (MGP_SPRETEiJ_G0024610) #12	Fkbp7 (MGP_SPRETEiJ_G0024611) #13	Plekha3 (MGP_SPRETEiJ_G0024612) #14	Ttn (MGP_SPRETEiJ_G0024613)	Ccdc141 (MGP_SPRETEiJ_G0024614) #18	Sestd1 (MGP_SPRETEiJ_G0024615) #19	Zfp385b (MGP_SPRETEiJ_G0024616) #20	Ube2e3 (MGP_SPRETEiJ_G0024618) #22	Itga4 (MGP_SPRETEiJ_G0024619) #24	Cerkl (MGP_SPRETEiJ_G0024620) #25	Neurod1 (MGP_SPRETEiJ_G0024621) #26	Itprid2 (MGP_SPRETEiJ_G0024622) #27	Ppp1r1c (MGP_SPRETEiJ_G0024623) #28	Pde1a (MGP_SPRETEiJ_G0024624) #30	Prdx6b (MGP_SPRETEiJ_G0024625)	Dnajc10 (MGP_SPRETEiJ_G0024626) #31	Frzb (MGP_SPRETEiJ_G0024627) #32	Nckap1 (MGP_SPRETEiJ_G0024628) #33	Dusp19 (MGP_SPRETEiJ_G0024629) #34	MGP_SPRETEiJ_G0024630 #35	Zfp804a (MGP_SPRETEiJ_G0024631) #37	Fsip2 (MGP_SPRETEiJ_G0024632)	Zc3h15 (MGP_SPRETEiJ_G0024633)
Steppe mouse	DUPLICATION
Steppe mouse	MODERN SPECIES	2755														Cwc22 (ENSMSIG00000008052) #21	ENSMSIG00000008002	Ube2e3 (ENSMSIG00000007961) #22
Steppe mouse	MODERN SPECIES	221																ENSMSIG00000022172 #22
Cricetidae	ANCESTRAL SPECIES	12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263523.B	ENSGT00900000143159	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.e.a.b #21	ENSGT00390000005421	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Cricetinae	ANCESTRAL SPECIES	1	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT00900000143154	ENSGT01100000263523.B	ENSGT00900000143159	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.f #21	ENSGT00940000153458.B.e.a.b #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000009405.b.f	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Chinese hamster chok1gshd	MODERN SPECIES	188	Pde11a (ENSCGRG00001011422)	Cyct (ENSCGRG00001008096) #7	Rbm45 (ENSCGRG00001005759) #8	Osbpl6 (ENSCGRG00001002669) #10	Prkra (ENSCGRG00001009200) #11	Pjvk (ENSCGRG00001006219) #12	Fkbp7 (ENSCGRG00001004871) #13	Plekha3 (ENSCGRG00001002827) #14	ENSCGRG00001001535 #15	ENSCGRG00001011823	ENSCGRG00001011105	Ccdc141 (ENSCGRG00001009332) #18	Sestd1 (ENSCGRG00001013863) #19	Zfp385b (ENSCGRG00001019414) #20	ENSCGRG00001017005 #21	Ube2e3 (ENSCGRG00001015500) #22	Itga4 (ENSCGRG00001014691) #24	ENSCGRG00001019557 #25	Neurod1 (ENSCGRG00001005185) #26	Itprid2 (ENSCGRG00001003023) #27	Ppp1r1c (ENSCGRG00001024908) #28	Pde1a (ENSCGRG00001024848) #30	Dnajc10 (ENSCGRG00001024374) #31	Frzb (ENSCGRG00001017945) #32	Nckap1 (ENSCGRG00001016296) #33	Dusp19 (ENSCGRG00001019332) #34	Nup35 (ENSCGRG00001018638) #35	ENSCGRG00001004551	Zfp804a (ENSCGRG00001016790) #37	ENSCGRG00001014325	ENSCGRG00001023073
Golden Hamster	MODERN SPECIES	618	Osbpl6 (ENSMAUG00000018609) #10	Prkra (ENSMAUG00000019631) #11	Pjvk (ENSMAUG00000018018) #12	Fkbp7 (ENSMAUG00000016606) #13	Plekha3 (ENSMAUG00000019341) #14	ENSMAUG00000018786 #15	ENSMAUG00000019513	ENSMAUG00000018562	ENSMAUG00000018214	ENSMAUG00000016510	ENSMAUG00000001413	Ccdc141 (ENSMAUG00000016807) #18	Sestd1 (ENSMAUG00000019077) #19	Zfp385b (ENSMAUG00000017440) #20	ENSMAUG00000016154 #21	Ube2e3 (ENSMAUG00000015025) #22	Itga4 (ENSMAUG00000016911) #24	Cerkl (ENSMAUG00000016321) #25	Neurod1 (ENSMAUG00000016034) #26	Ppp1r1c (ENSMAUG00000015644) #28	Pde1a (ENSMAUG00000018687) #30	ENSMAUG00000015614 #31	Frzb (ENSMAUG00000015424) #32	Nckap1 (ENSMAUG00000017749) #33	Dusp19 (ENSMAUG00000017669) #34	Nup35 (ENSMAUG00000013776) #35	ENSMAUG00000001395	Zfp804a (ENSMAUG00000015074) #37	Fsip2 (ENSMAUG00000015106)	Zc3h15 (ENSMAUG00000016743)	Itgav (ENSMAUG00000015740)
Cricetidae_B	ANCESTRAL SPECIES	7	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.B	ENSGT01100000263523.A	ENSGT00900000143154	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B.f #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Prairie vole	MODERN SPECIES	12	Prkra (ENSMOCG00000004548) #11	Pjvk (ENSMOCG00000006830) #12	Fkbp7 (ENSMOCG00000008125) #13	Plekha3 (ENSMOCG00000004146) #14	ENSMOCG00000015811 #15	ENSMOCG00000017796	ENSMOCG00000017985	ENSMOCG00000019853	ENSMOCG00000002080	Ccdc141 (ENSMOCG00000016129) #18	Sestd1 (ENSMOCG00000006024) #19	Zfp385b (ENSMOCG00000006938) #20	ENSMOCG00000008654	ENSMOCG00000005265 #21	ENSMOCG00000001411 #21	Ube2e3 (ENSMOCG00000016543) #22	Itga4 (ENSMOCG00000019485) #24	ENSMOCG00000007880 #25	ENSMOCG00000009852 #25	Neurod1 (ENSMOCG00000001404) #26	Itprid2 (ENSMOCG00000022195) #27	Ppp1r1c (ENSMOCG00000001838) #28	Pde1a (ENSMOCG00000014778) #30	ENSMOCG00000013906 #31	Frzb (ENSMOCG00000001757) #32	Nckap1 (ENSMOCG00000020140) #33	Dusp19 (ENSMOCG00000021439) #34	Nup35 (ENSMOCG00000014754) #35	Zfp804a (ENSMOCG00000015465) #37	Fsip2 (ENSMOCG00000008842)	ENSMOCG00000020986
Northern American deer mouse	DUPLICATION
Northern American deer mouse	DUPLICATION
Northern American deer mouse	MODERN SPECIES	17	Rbm45 (ENSPEMG00000002470) #8	Osbpl6 (ENSPEMG00000010580) #10	Prkra (ENSPEMG00000011967) #11	Pjvk (ENSPEMG00000013970) #12	Fkbp7 (ENSPEMG00000011534) #13	Plekha3 (ENSPEMG00000021541) #14	Ttn (ENSPEMG00000022085)	ENSPEMG00000014359	ENSPEMG00000028754 #16	ENSPEMG00000031084 ##17	ENSPEMG00000024072 #18	Sestd1 (ENSPEMG00000013464) #19	Zfp385b (ENSPEMG00000011546) #20	ENSPEMG00000023936 #21	ENSPEMG00000028400	ENSPEMG00000017108 #22	Itga4 (ENSPEMG00000013847) #24	Cerkl (ENSPEMG00000023559) #25	Neurod1 (ENSPEMG00000004936) #26	Itprid2 (ENSPEMG00000017593) #27	Ppp1r1c (ENSPEMG00000006349) #28	Pde1a (ENSPEMG00000014049) #30	Dnajc10 (ENSPEMG00000012995) #31	Frzb (ENSPEMG00000027349) #32	Nckap1 (ENSPEMG00000007640) #33	Dusp19 (ENSPEMG00000012593) #34	Nup35 (ENSPEMG00000014718) #35	Zfp804a (ENSPEMG00000024016) #37	ENSPEMG00000002778	Or4p19 (ENSPEMG00000029115)	Or4p18 (ENSPEMG00000028169)
Northern American deer mouse	MODERN SPECIES	14	Slc25a23 (ENSPEMG00000021021)	Crb3 (ENSPEMG00000021919)	Dennd1c (ENSPEMG00000023860)	Tubb4a (ENSPEMG00000028633)	Tnfsf9 (ENSPEMG00000020989)	Cd70 (ENSPEMG00000015587)	ENSPEMG00000011159	ENSPEMG00000015087	Tnfsf14 (ENSPEMG00000000292)	ENSPEMG00000001526	Gpr108 (ENSPEMG00000030315)	Trip10 (ENSPEMG00000017394)	ENSPEMG00000031058	Vav1 (ENSPEMG00000015943)	Adgre1 (ENSPEMG00000013357)	ENSPEMG00000008525 #22	ENSPEMG00000028855	ENSPEMG00000030002	2610008E11Rik (ENSPEMG00000029764)	ENSPEMG00000008518	ENSPEMG00000008828	Or7a36 (ENSPEMG00000011041)	ENSPEMG00000009495	ENSPEMG00000015450	Ccdc105 (ENSPEMG00000008931)	Casp14 (ENSPEMG00000003806)	Or1i2 (ENSPEMG00000002732)	Syde1 (ENSPEMG00000017967)	Ilvbl (ENSPEMG00000016636)	Or10b1 (ENSPEMG00000031391)	Notch3 (ENSPEMG00000003368)
Northern American deer mouse	MODERN SPECIES	475	ENSPEMG00000011666	Pramex1 (ENSPEMG00000029817)	Tcp11x2 (ENSPEMG00000014704)	ENSPEMG00000026368	ENSPEMG00000006219	ENSPEMG00000031074	Armcx5 (ENSPEMG00000009750)	ENSPEMG00000029192	ENSPEMG00000013496	Gprasp2 (ENSPEMG00000001857)	Bhlhb9 (ENSPEMG00000015611)	ENSPEMG00000025703	ENSPEMG00000025810	Pwwp3b (ENSPEMG00000031298)	Fam199x (ENSPEMG00000022328)	ENSPEMG00000022336 #22	ENSPEMG00000030442	Tex13a (ENSPEMG00000009571)	ENSPEMG00000031375	ENSPEMG00000008826	Il1rapl2 (ENSPEMG00000002784)	ENSPEMG00000009338	Serpina7 (ENSPEMG00000016392)	ENSPEMG00000028394	ENSPEMG00000026482	ENSPEMG00000026764	Agtr2 (ENSPEMG00000003517)	Slc6a14 (ENSPEMG00000022771)	ENSPEMG00000028133	ENSPEMG00000027715	ENSPEMG00000025640
Lagomorpha	ANCESTRAL SPECIES																	ENSGT00940000155392 #22
Rabbit	DUPLICATION
Rabbit	MODERN SPECIES		ENSOCUG00000038405	CWF19L2 (ENSOCUG00000025398)	ELMOD1 (ENSOCUG00000011869)	ENSOCUG00000011876	SLC35F2 (ENSOCUG00000011878)	RAB39A (ENSOCUG00000021112)	CUL5 (ENSOCUG00000010907)	ACAT1 (ENSOCUG00000002882)	ATM (ENSOCUG00000014663)	C11orf65 (ENSOCUG00000000044)	ENSOCUG00000035350	POGLUT3 (ENSOCUG00000014539)	EXPH5 (ENSOCUG00000016757)	DDX10 (ENSOCUG00000003843)	C11orf87 (ENSOCUG00000001196)	ENSOCUG00000006972 #22	ZC3H12C (ENSOCUG00000005283)	RDX (ENSOCUG00000014267)	ENSOCUG00000032740	ENSOCUG00000017826	ENSOCUG00000031937	ARHGAP20 (ENSOCUG00000013948)	ENSOCUG00000030051	ENSOCUG00000039274	ENSOCUG00000017811	ENSOCUG00000029694	POU2AF2 (ENSOCUG00000009285)	POU2AF3 (ENSOCUG00000022422)	POU2AF1 (ENSOCUG00000012566)	ENSOCUG00000027498	HOATZ (ENSOCUG00000012891)
Rabbit	MODERN SPECIES	18	PRKRA (ENSOCUG00000005489) #11	PJVK (ENSOCUG00000005493) #12	FKBP7 (ENSOCUG00000024679) #13	PLEKHA3 (ENSOCUG00000005495) #14	ENSOCUG00000016777	ENSOCUG00000033996	ENSOCUG00000035152 #16	ENSOCUG00000024537 #17	ENSOCUG00000021281	CCDC141 (ENSOCUG00000016954) #18	SESTD1 (ENSOCUG00000017837) #19	ZNF385B (ENSOCUG00000004877) #20	ENSOCUG00000032017	CWC22 (ENSOCUG00000002363) #21	ENSOCUG00000023586	ENSOCUG00000029359 #22	ENSOCUG00000033581	ITGA4 (ENSOCUG00000003008) #24	ENSOCUG00000021258	ENSOCUG00000031175	CERKL (ENSOCUG00000003021) #25	ENSOCUG00000012914	ENSOCUG00000007548 #26	ITPRID2 (ENSOCUG00000010134) #27	PPP1R1C (ENSOCUG00000010147) #28	PDE1A (ENSOCUG00000016522) #30	DNAJC10 (ENSOCUG00000029255) #31	FRZB (ENSOCUG00000010371) #32	ENSOCUG00000030787	NCKAP1 (ENSOCUG00000013133) #33	DUSP19 (ENSOCUG00000013156) #34
Primates	ANCESTRAL SPECIES	13	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Strepsirrhini	ANCESTRAL SPECIES	10	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.B	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Bushbaby	MODERN SPECIES	163	ENSOGAG00000013191	ENSOGAG00000026648 #7	RBM45 (ENSOGAG00000015195) #8	OSBPL6 (ENSOGAG00000013765) #10	PRKRA (ENSOGAG00000013971) #11	PJVK (ENSOGAG00000033780) #12	FKBP7 (ENSOGAG00000002721) #13	PLEKHA3 (ENSOGAG00000002724) #14	ENSOGAG00000029563 ##17	ENSOGAG00000025603	CCDC141 (ENSOGAG00000003186) #18	SESTD1 (ENSOGAG00000011106) #19	ZNF385B (ENSOGAG00000008520) #20	CWC22 (ENSOGAG00000015287) #21	ENSOGAG00000029031	UBE2E3 (ENSOGAG00000014956) #22	ITGA4 (ENSOGAG00000016121) #24	CERKL (ENSOGAG00000016136) #25	NEUROD1 (ENSOGAG00000025613) #26	ITPRID2 (ENSOGAG00000016144) #27	PPP1R1C (ENSOGAG00000012382) #28	PDE1A (ENSOGAG00000012388) #30	ENSOGAG00000024215	DNAJC10 (ENSOGAG00000006969) #31	FRZB (ENSOGAG00000028815) #32	NCKAP1 (ENSOGAG00000013902) #33	DUSP19 (ENSOGAG00000011915) #34	NUP35 (ENSOGAG00000011920) #35	ZNF804A (ENSOGAG00000006031) #37	FSIP2 (ENSOGAG00000028853)	ENSOGAG00000033143
Lemuriformes	ANCESTRAL SPECIES	5	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.B	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Mouse lemur	DUPLICATION
Mouse lemur	MODERN SPECIES	169	ELF4 (ENSMICG00000007427)	BCORL1 (ENSMICG00000015994)	ENSMICG00000005161	ENSMICG00000032019	ZDHHC9 (ENSMICG00000015847)	SASH3 (ENSMICG00000026483)	XPNPEP2 (ENSMICG00000015814)	ENSMICG00000036721	APLN (ENSMICG00000043883)	OCRL (ENSMICG00000015790)	SMARCA1 (ENSMICG00000015768)	ENSMICG00000027085	ENSMICG00000037227	ENSMICG00000026701	ENSMICG00000042684	ENSMICG00000011704 #22	PRR32 (ENSMICG00000000543)	DCAF12L2 (ENSMICG00000004409)	ENSMICG00000042966	ENSMICG00000044524	TENM1 (ENSMICG00000007903)	SH2D1A (ENSMICG00000043770)	ENSMICG00000037954	ENSMICG00000048037	THOC2 (ENSMICG00000011840)	GRIA3 (ENSMICG00000013350)	ENSMICG00000035616	ARSH (ENSMICG00000009734)	ENSMICG00000005658	ENSMICG00000045459	GYG2 (ENSMICG00000015522)
Mouse lemur	MODERN SPECIES	30	PDE11A (ENSMICG00000003770)	ENSMICG00000047030 #7	RBM45 (ENSMICG00000003787) #8	OSBPL6 (ENSMICG00000003793) #10	PRKRA (ENSMICG00000009883) #11	PJVK (ENSMICG00000028765) #12	FKBP7 (ENSMICG00000044765) #13	ENSMICG00000009898 #14	ENSMICG00000031280	ENSMICG00000043822 #16	ENSMICG00000030550	CCDC141 (ENSMICG00000010122) #18	SESTD1 (ENSMICG00000016724) #19	ZNF385B (ENSMICG00000016924) #20	CWC22 (ENSMICG00000016919) #21	UBE2E3 (ENSMICG00000001647) #22	ITGA4 (ENSMICG00000012605) #24	CERKL (ENSMICG00000012638) #25	NEUROD1 (ENSMICG00000042141) #26	ITPRID2 (ENSMICG00000012667) #27	PPP1R1C (ENSMICG00000034129) #28	PDE1A (ENSMICG00000001911) #30	ENSMICG00000038154	ENSMICG00000006441 #31	FRZB (ENSMICG00000046694) #32	NCKAP1 (ENSMICG00000000966) #33	DUSP19 (ENSMICG00000006787) #34	NUP35 (ENSMICG00000006790) #35	ZNF804A (ENSMICG00000031657) #37	FSIP2 (ENSMICG00000045896)	ZC3H15 (ENSMICG00000014245)
Lemuriformes_a	ANCESTRAL SPECIES	223																ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37
Coquerels sifaka	MODERN SPECIES	492	CDC40 (ENSPCOG00000015486)	METTL24 (ENSPCOG00000020108)	DDO (ENSPCOG00000003716)	SLC22A16 (ENSPCOG00000015137)	CDK19 (ENSPCOG00000027559)	AMD1 (ENSPCOG00000025049)	OSER1 (ENSPCOG00000017403)	JPH2 (ENSPCOG00000023713)	TOX2 (ENSPCOG00000023718)	GTSF1L (ENSPCOG00000013630)	MYBL2 (ENSPCOG00000028607)	ENSPCOG00000017065	SGK2 (ENSPCOG00000021916)	L3MBTL1 (ENSPCOG00000027177)	SRSF6 (ENSPCOG00000026364)	UBE2E3 (ENSPCOG00000022519) #22	ITGA4 (ENSPCOG00000005136) #24	CERKL (ENSPCOG00000019287) #25	NEUROD1 (ENSPCOG00000013346) #26	ITPRID2 (ENSPCOG00000019219) #27	PPP1R1C (ENSPCOG00000027920) #28	PDE1A (ENSPCOG00000005906) #30	DNAJC10 (ENSPCOG00000016951) #31	ENSPCOG00000000368	FRZB (ENSPCOG00000015628) #32	NCKAP1 (ENSPCOG00000006055) #33	DUSP19 (ENSPCOG00000008687) #34	NUP35 (ENSPCOG00000024097) #35
Greater bamboo lemur	MODERN SPECIES	278																UBE2E3 (ENSPSMG00000010252) #22	ITGA4 (ENSPSMG00000010331) #24	CERKL (ENSPSMG00000010500) #25	ITPRID2 (ENSPSMG00000010754) #27	PPP1R1C (ENSPSMG00000010823) #28	ENSPSMG00000010828	PDE1A (ENSPSMG00000011014) #30	DNAJC10 (ENSPSMG00000011222) #31	FRZB (ENSPSMG00000011269) #32	NCKAP1 (ENSPSMG00000011475) #33	DUSP19 (ENSPSMG00000011663) #34	NUP35 (ENSPSMG00000011698) #35	ZNF804A (ENSPSMG00000011733) #37	LIN28A (ENSPSMG00000011746)	ZNF683 (ENSPSMG00000011756)	CRYBG2 (ENSPSMG00000011776)
Haplorrhini	ANCESTRAL SPECIES	10	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Simiiformes	ANCESTRAL SPECIES	15	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.L	ENSGT01100000263523.F	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Platyrrhini	ANCESTRAL SPECIES	9	ENSGT00390000010116.lb	ENSGT00390000010116.mb	ENSGT00940000162151	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00390000003152.j.ub.a	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000009405.b.b	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Mas night monkey	MODERN SPECIES	1331				ENSANAG00000033840	PRKRA (ENSANAG00000019410) #11	PJVK (ENSANAG00000005847) #12	FKBP7 (ENSANAG00000022671) #13	PLEKHA3 (ENSANAG00000033781) #14	ENSANAG00000021811 #16	TTN (ENSANAG00000027205)	CCDC141 (ENSANAG00000029671) #18	SESTD1 (ENSANAG00000025160) #19	ZNF385B (ENSANAG00000024683) #20	CWC22 (ENSANAG00000028324) #21	ENSANAG00000026602	UBE2E3 (ENSANAG00000033245) #22	ITGA4 (ENSANAG00000023637) #24	ENSANAG00000031121 #25
Cebidae	ANCESTRAL SPECIES	11	ENSGT00390000010116.lb	ENSGT00390000010116.mb	ENSGT00940000162151	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148.s #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00390000003152.j.ub.a	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000009405.b.b	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Marmoset	DUPLICATION
Marmoset	MODERN SPECIES	43																ENSCJAG00000011559 #22	ENSCJAG00000082975	ENSCJAG00000071242
Marmoset	MODERN SPECIES	18	ENSCJAG00000021516 #8	ENSCJAG00000072241	ENSCJAG00000047313 #21	ENSCJAG00000084427	ZNF385B (ENSCJAG00000021534) #20	SESTD1 (ENSCJAG00000021532) #19	CCDC141 (ENSCJAG00000032110) #18	ENSCJAG00000021525 #16	PLEKHA3 (ENSCJAG00000045213) #14	FKBP7 (ENSCJAG00000021523) #13	PJVK (ENSCJAG00000021522) #12	PRKRA (ENSCJAG00000021521) #11	OSBPL6 (ENSCJAG00000021518) #10	ENSCJAG00000085664 #8	ENSCJAG00000077946	ENSCJAG00000071216 #22	ENSCJAG00000077566	ENSCJAG00000084346	ITGA4 (ENSCJAG00000011542) #24	CERKL (ENSCJAG00000042373) #25	NEUROD1 (ENSCJAG00000011529) #26	ITPRID2 (ENSCJAG00000011452) #27	PPP1R1C (ENSCJAG00000056492) #28	PDE1A (ENSCJAG00000011397) #30	DNAJC10 (ENSCJAG00000011295) #31	FRZB (ENSCJAG00000046070) #32	ENSCJAG00000068753	NCKAP1 (ENSCJAG00000011170) #33	DUSP19 (ENSCJAG00000011160) #34	NUP35 (ENSCJAG00000011104) #35	ENSCJAG00000086708
Cebidae_a	ANCESTRAL SPECIES	27	ENSGT00390000010116.lb	ENSGT00390000010116.mb	ENSGT00940000162151	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148.s #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00390000003152.j.ub.a	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37
Bolivian squirrel monkey	MODERN SPECIES	46	ENSSBOG00000018055	PDE11A (ENSSBOG00000026746)	RBM45 (ENSSBOG00000005469) #8	OSBPL6 (ENSSBOG00000020436) #10	ENSSBOG00000035006	PRKRA (ENSSBOG00000012105) #11	PJVK (ENSSBOG00000022982) #12	FKBP7 (ENSSBOG00000029794) #13	PLEKHA3 (ENSSBOG00000030061) #14	ENSSBOG00000032089 #16	TTN (ENSSBOG00000021641)	CCDC141 (ENSSBOG00000020873) #18	SESTD1 (ENSSBOG00000028940) #19	ZNF385B (ENSSBOG00000033350) #20	CWC22 (ENSSBOG00000021683) #21	UBE2E3 (ENSSBOG00000032070) #22	ENSSBOG00000019739	ITGA4 (ENSSBOG00000000272) #24	CERKL (ENSSBOG00000021307) #25	NEUROD1 (ENSSBOG00000015587) #26	ITPRID2 (ENSSBOG00000013272) #27	PPP1R1C (ENSSBOG00000032708) #28	ENSSBOG00000030558	PDE1A (ENSSBOG00000034194) #30	ENSSBOG00000035539	DNAJC10 (ENSSBOG00000020962) #31	FRZB (ENSSBOG00000023256) #32	NCKAP1 (ENSSBOG00000031170) #33	DUSP19 (ENSSBOG00000029076) #34	NUP35 (ENSSBOG00000018676) #35	ENSSBOG00000026419
Capuchin	DUPLICATION
Capuchin	DUPLICATION
Capuchin	MODERN SPECIES	946															CYP4F2 (ENSCCAG00000023225)	ENSCCAG00000028126 #22
Capuchin	MODERN SPECIES	469				CD163 (ENSCCAG00000037775)	ENSCCAG00000036422	ENSCCAG00000026419	ENSCCAG00000027282	ENSCCAG00000020433	ENSCCAG00000029802	APOBEC1 (ENSCCAG00000022258)	GDF3 (ENSCCAG00000024344)	ENSCCAG00000035290	NANOGNB (ENSCCAG00000032425)	ENSCCAG00000027004	ENSCCAG00000019466	ENSCCAG00000037121 #22	FOXJ2 (ENSCCAG00000006397)	NECAP1 (ENSCCAG00000015830)	ENSCCAG00000015141	CLEC4A (ENSCCAG00000033083)	ENSCCAG00000006775	ENSCCAG00000021038	CLEC6A (ENSCCAG00000029120)	CLEC4D (ENSCCAG00000030690)	CLEC4E (ENSCCAG00000033330)	AICDA (ENSCCAG00000030398)	MFAP5 (ENSCCAG00000028419)	RIMKLB (ENSCCAG00000020509)	A2ML1 (ENSCCAG00000014289)	PHC1 (ENSCCAG00000033492)	ENSCCAG00000031956
Capuchin	MODERN SPECIES	78	ENSCCAG00000002151	ENSCCAG00000011267	PDE11A (ENSCCAG00000023473)	RBM45 (ENSCCAG00000022783) #8	OSBPL6 (ENSCCAG00000034516) #10	PRKRA (ENSCCAG00000024400) #11	PJVK (ENSCCAG00000036547) #12	FKBP7 (ENSCCAG00000023204) #13	PLEKHA3 (ENSCCAG00000021212) #14	TTN (ENSCCAG00000034292)	ENSCCAG00000031194 #16	CCDC141 (ENSCCAG00000022986) #18	SESTD1 (ENSCCAG00000035636) #19	ZNF385B (ENSCCAG00000036046) #20	CWC22 (ENSCCAG00000021239) #21	UBE2E3 (ENSCCAG00000031594) #22	ITGA4 (ENSCCAG00000033915) #24	CERKL (ENSCCAG00000020579) #25	NEUROD1 (ENSCCAG00000019900) #26	ENSCCAG00000012509	ITPRID2 (ENSCCAG00000036830) #27	PPP1R1C (ENSCCAG00000030400) #28	PDE1A (ENSCCAG00000022865) #30	ENSCCAG00000019862	DNAJC10 (ENSCCAG00000034247) #31	FRZB (ENSCCAG00000003500) #32	NCKAP1 (ENSCCAG00000033402) #33	DUSP19 (ENSCCAG00000037099) #34	NUP35 (ENSCCAG00000025009) #35
Catarrhini	ANCESTRAL SPECIES	16	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.L	ENSGT01100000263523.F	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Cercopithecidae	ANCESTRAL SPECIES	13	ENSGT00390000010116.kb	ENSGT00940000162151	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000153295.a.n	ENSGT00390000007542	ENSGT00940000160909 #37
Cercopithecinae	ANCESTRAL SPECIES	11	ENSGT00390000010116.kb	ENSGT00940000162151	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000153295.a.n	ENSGT00390000007542	ENSGT00940000160909 #37
Vervet Monkey	MODERN SPECIES	1	NFE2L2 (ENSCSAG00000014353)	AGPS (ENSCSAG00000014345)	TTC30A (ENSCSAG00000018651)	PDE11A (ENSCSAG00000014313)	ENSCSAG00000014240	RBM45 (ENSCSAG00000014231) #8	OSBPL6 (ENSCSAG00000014221) #10	PJVK (ENSCSAG00000014212) #12	FKBP7 (ENSCSAG00000014194) #13	PLEKHA3 (ENSCSAG00000014182) #14	TTN (ENSCSAG00000013817)	CCDC141 (ENSCSAG00000012957) #18	SESTD1 (ENSCSAG00000012944) #19	ZNF385B (ENSCSAG00000012932) #20	CWC22 (ENSCSAG00000012925) #21	UBE2E3 (ENSCSAG00000012910) #22	ITGA4 (ENSCSAG00000012902) #24	CERKL (ENSCSAG00000012861) #25	NEUROD1 (ENSCSAG00000018652) #26	ITPRID2 (ENSCSAG00000012799) #27	PPP1R1C (ENSCSAG00000012786) #28	PDE1A (ENSCSAG00000012759) #30	DNAJC10 (ENSCSAG00000012686) #31	ENSCSAG00000012675	FRZB (ENSCSAG00000012659) #32	NCKAP1 (ENSCSAG00000012646) #33	DUSP19 (ENSCSAG00000012629) #34	NUP35 (ENSCSAG00000012620) #35	ENSCSAG00000018653	ZNF804A (ENSCSAG00000012608) #37	FSIP2 (ENSCSAG00000012586)
Cercopithecinae_a	ANCESTRAL SPECIES	16	ENSGT00390000010116.kb	ENSGT00940000162151	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000153295.a.n	ENSGT00390000007542	ENSGT00940000160909 #37
Macaca	ANCESTRAL SPECIES	15	ENSGT00390000010116.jb	ENSGT00390000010116.kb	ENSGT00940000162151	ENSGT00940000168702	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000153295.a.n	ENSGT00940000159940.a.a	ENSGT00910000146981
Pig-tailed macaque	DUPLICATION
Pig-tailed macaque	MODERN SPECIES	248	ZNF534 (ENSMNEG00000044177)	ENSMNEG00000027858	ENSMNEG00000023583	ZNF808 (ENSMNEG00000043562)	ENSMNEG00000035379	ENSMNEG00000028454	ZNF28 (ENSMNEG00000042815)	ZNF468 (ENSMNEG00000041194)	ENSMNEG00000045369	ZNF888 (ENSMNEG00000037271)	ZNF816 (ENSMNEG00000030249)	ENSMNEG00000030248	ENSMNEG00000031312	ZNF320 (ENSMNEG00000039739)	ENSMNEG00000040503	ENSMNEG00000037266 #22	ENSMNEG00000028956	ENSMNEG00000039708	ZNF160 (ENSMNEG00000044441)	ZNF415 (ENSMNEG00000032629)	ZNF347 (ENSMNEG00000037350)	ZNF665 (ENSMNEG00000011318)	ZNF677 (ENSMNEG00000042310)	ENSMNEG00000045225	ENSMNEG00000043419	ENSMNEG00000028876	ZNF331 (ENSMNEG00000039489)	DPRX (ENSMNEG00000032869)	NLRP12 (ENSMNEG00000035386)	MYADM (ENSMNEG00000009444)	PRKCG (ENSMNEG00000037765)
Pig-tailed macaque	MODERN SPECIES	284								ENSMNEG00000031047 #16	ENSMNEG00000044827	CCDC141 (ENSMNEG00000003233) #18	SESTD1 (ENSMNEG00000032068) #19	ENSMNEG00000038524	ZNF385B (ENSMNEG00000033615) #20	CWC22 (ENSMNEG00000034567) #21	ENSMNEG00000006189	UBE2E3 (ENSMNEG00000029976) #22	ITGA4 (ENSMNEG00000043695) #24	CERKL (ENSMNEG00000038385) #25	ENSMNEG00000026442	NEUROD1 (ENSMNEG00000002716) #26	ENSMNEG00000040335	ITPRID2 (ENSMNEG00000044199) #27	PPP1R1C (ENSMNEG00000028750) #28	PDE1A (ENSMNEG00000038768) #30	ENSMNEG00000037724	DNAJC10 (ENSMNEG00000042985) #31	FRZB (ENSMNEG00000036082) #32	NCKAP1 (ENSMNEG00000029747) #33	ENSMNEG00000006953	DUSP19 (ENSMNEG00000031692) #34	NUP35 (ENSMNEG00000029014) #35
Pig-tailed macaque	MODERN SPECIES	558	ENSMNEG00000035315	OGFRL1 (ENSMNEG00000029789)	B3GAT2 (ENSMNEG00000045320)	SMAP1 (ENSMNEG00000033567)	SDHAF4 (ENSMNEG00000030604)	FAM135A (ENSMNEG00000034243)	COL9A1 (ENSMNEG00000030689)	COL19A1 (ENSMNEG00000043640)	LMBRD1 (ENSMNEG00000044526)	ADGRB3 (ENSMNEG00000033979)	ENSMNEG00000015246	ENSMNEG00000006166	EYS (ENSMNEG00000030719)	PHF3 (ENSMNEG00000039213)	PTP4A1 (ENSMNEG00000031726)	ENSMNEG00000030116 #22	LGSN (ENSMNEG00000041750)	ENSMNEG00000028616	KHDRBS2 (ENSMNEG00000042875)	ENSMNEG00000029524	ENSMNEG00000010691	ENSMNEG00000043835	ENSMNEG00000035173	RAB23 (ENSMNEG00000037012)	BAG2 (ENSMNEG00000035373)	ZNF451 (ENSMNEG00000015677)	KIAA1586 (ENSMNEG00000041346)	BEND6 (ENSMNEG00000033409)	ENSMNEG00000039464	ENSMNEG00000043240	DST (ENSMNEG00000044582)
Macaca_a	ANCESTRAL SPECIES	17	ENSGT00390000010116.jb	ENSGT00390000010116.kb	ENSGT00940000162151	ENSGT00940000168702	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT01100000263543.a.g.b.a.b.a.b.a	ENSGT00910000146981	ENSGT01090000262932	ENSGT00940000160909 #37
Rhesus	MODERN SPECIES	3	TTC30A (ENSMMUG00000041827)	PDE11A (ENSMMUG00000002011)	RBM45 (ENSMMUG00000002013) #8	OSBPL6 (ENSMMUG00000002183) #10	PRKRA (ENSMMUG00000002185) #11	PJVK (ENSMMUG00000054264) #12	FKBP7 (ENSMMUG00000002187) #13	PLEKHA3 (ENSMMUG00000002189) #14	TTN (ENSMMUG00000009038)	ENSMMUG00000019689 #18	SESTD1 (ENSMMUG00000019690) #19	ZNF385B (ENSMMUG00000003855) #20	ENSMMUG00000060170	ENSMMUG00000049746	CWC22 (ENSMMUG00000020642) #21	UBE2E3 (ENSMMUG00000008069) #22	ITGA4 (ENSMMUG00000000300) #24	CERKL (ENSMMUG00000015344) #25	NEUROD1 (ENSMMUG00000008296) #26	ITPRID2 (ENSMMUG00000014277) #27	PPP1R1C (ENSMMUG00000049511) #28	PDE1A (ENSMMUG00000001163) #30	ENSMMUG00000051994	DNAJC10 (ENSMMUG00000014394) #31	FRZB (ENSMMUG00000014396) #32	NCKAP1 (ENSMMUG00000014397) #33	DUSP19 (ENSMMUG00000047996) #34	NUP35 (ENSMMUG00000004140) #35	ENSMMUG00000052339	ENSMMUG00000061491	ZNF804A (ENSMMUG00000012423) #37
Crab-eating macaque	MODERN SPECIES	3	TTC30A (ENSMFAG00000053112)	PDE11A (ENSMFAG00000042268)	ENSMFAG00000034055	RBM45 (ENSMFAG00000042524) #8	ENSMFAG00000060300	OSBPL6 (ENSMFAG00000003510) #10	PRKRA (ENSMFAG00000040213) #11	PJVK (ENSMFAG00000001249) #12	FKBP7 (ENSMFAG00000034329) #13	PLEKHA3 (ENSMFAG00000031192) #14	ENSMFAG00000063214	CCDC141 (ENSMFAG00000000963) #18	SESTD1 (ENSMFAG00000013388) #19	ZNF385B (ENSMFAG00000043013) #20	CWC22 (ENSMFAG00000000590) #21	UBE2E3 (ENSMFAG00000042067) #22	ITGA4 (ENSMFAG00000038317) #24	CERKL (ENSMFAG00000031604) #25	NEUROD1 (ENSMFAG00000034877) #26	ITPRID2 (ENSMFAG00000035906) #27	PPP1R1C (ENSMFAG00000037755) #28	PDE1A (ENSMFAG00000034433) #30	DNAJC10 (ENSMFAG00000033148) #31	ENSMFAG00000061887	FRZB (ENSMFAG00000035606) #32	NCKAP1 (ENSMFAG00000001975) #33	DUSP19 (ENSMFAG00000034205) #34	NUP35 (ENSMFAG00000000834) #35	ENSMFAG00000065427	ENSMFAG00000063860	ZNF804A (ENSMFAG00000042172) #37
Cercopithecinae_b	ANCESTRAL SPECIES	10	ENSGT00390000010116.kb	ENSGT00940000162151	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000153295.a.n	ENSGT00390000007542	ENSGT00940000160909 #37
Olive baboon	MODERN SPECIES	1	TTC30A (ENSPANG00000041839)	PDE11A (ENSPANG00000025222)	ENSPANG00000029672	RBM45 (ENSPANG00000016088) #8	ENSPANG00000046096	OSBPL6 (ENSPANG00000016378) #10	PRKRA (ENSPANG00000001046) #11	PJVK (ENSPANG00000014211) #12	FKBP7 (ENSPANG00000019540) #13	PLEKHA3 (ENSPANG00000013332) #14	TTN (ENSPANG00000022292)	CCDC141 (ENSPANG00000006772) #18	SESTD1 (ENSPANG00000020529) #19	ZNF385B (ENSPANG00000004252) #20	CWC22 (ENSPANG00000018976) #21	UBE2E3 (ENSPANG00000006052) #22	ITGA4 (ENSPANG00000007919) #24	CERKL (ENSPANG00000004250) #25	NEUROD1 (ENSPANG00000007303) #26	ENSPANG00000010159	ITPRID2 (ENSPANG00000018187) #27	PPP1R1C (ENSPANG00000026406) #28	PDE1A (ENSPANG00000011992) #30	ENSPANG00000009747	ENSPANG00000049718	DNAJC10 (ENSPANG00000012554) #31	FRZB (ENSPANG00000050327) #32	NCKAP1 (ENSPANG00000003739) #33	DUSP19 (ENSPANG00000000355) #34	NUP35 (ENSPANG00000013686) #35	ENSPANG00000043715
Cercopithecinae_d	ANCESTRAL SPECIES		ENSGT00390000010116.kb	ENSGT00940000162151	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000153295.a.n	ENSGT00390000007542	ENSGT00940000160909 #37
Drill	DUPLICATION
Drill	MODERN SPECIES	107										ENSMLEG00000036760	ENSMLEG00000038583	ZNF28 (ENSMLEG00000041213)	ZNF468 (ENSMLEG00000033227)	ZNF320 (ENSMLEG00000011375)	ZNF816 (ENSMLEG00000036926)	ENSMLEG00000039752 #22	ENSMLEG00000038242	ZNF160 (ENSMLEG00000040642)	ZNF415 (ENSMLEG00000041995)	ZNF347 (ENSMLEG00000000049)	ZNF665 (ENSMLEG00000034539)	ZNF677 (ENSMLEG00000041413)	ZNF845 (ENSMLEG00000044333)	ENSMLEG00000038728	ENSMLEG00000044093	ZNF765 (ENSMLEG00000029793)	ENSMLEG00000035663	ENSMLEG00000035014	ENSMLEG00000040211	ZNF813 (ENSMLEG00000030750)	ZNF331 (ENSMLEG00000039708)
Drill	MODERN SPECIES	1489													ENSMLEG00000031207	ZNF385B (ENSMLEG00000034603) #20	CWC22 (ENSMLEG00000042344) #21	UBE2E3 (ENSMLEG00000030695) #22
Sooty mangabey	DUPLICATION
Sooty mangabey	MODERN SPECIES	228	ZNF880 (ENSCATG00000025519)	ENSCATG00000035728	ZNF534 (ENSCATG00000040910)	ZNF808 (ENSCATG00000036940)	ZNF701 (ENSCATG00000036391)	ENSCATG00000042143	ENSCATG00000038142	ZNF611 (ENSCATG00000036192)	ZNF28 (ENSCATG00000035314)	ZNF468 (ENSCATG00000041129)	ZNF320 (ENSCATG00000042172)	ZNF888 (ENSCATG00000042797)	ZNF816 (ENSCATG00000043791)	ENSCATG00000041731	ENSCATG00000011552	ENSCATG00000037519 #22	ENSCATG00000038020	ENSCATG00000019907	ZNF160 (ENSCATG00000037429)	ZNF415 (ENSCATG00000031013)	ZNF347 (ENSCATG00000017011)	ZNF665 (ENSCATG00000030213)	ZNF845 (ENSCATG00000032570)	ZNF677 (ENSCATG00000014694)	ENSCATG00000018509	ENSCATG00000039003	ENSCATG00000044235	ENSCATG00000036054
Sooty mangabey	MODERN SPECIES	570	PDE11A (ENSCATG00000042325)	ENSCATG00000008317	ENSCATG00000039319 #7	RBM45 (ENSCATG00000041082) #8	OSBPL6 (ENSCATG00000040355) #10	PRKRA (ENSCATG00000032736) #11	PJVK (ENSCATG00000035539) #12	FKBP7 (ENSCATG00000037065) #13	PLEKHA3 (ENSCATG00000038850) #14	TTN (ENSCATG00000041967)	CCDC141 (ENSCATG00000030397) #18	SESTD1 (ENSCATG00000024404) #19	ENSCATG00000029006	ZNF385B (ENSCATG00000024097) #20	CWC22 (ENSCATG00000035788) #21	UBE2E3 (ENSCATG00000042765) #22	ITGA4 (ENSCATG00000029659) #24	CERKL (ENSCATG00000030184) #25	NEUROD1 (ENSCATG00000002204) #26	ENSCATG00000032752	ITPRID2 (ENSCATG00000042037) #27	PPP1R1C (ENSCATG00000032898) #28	PDE1A (ENSCATG00000035876) #30	ENSCATG00000039903	DNAJC10 (ENSCATG00000029936) #31	FRZB (ENSCATG00000033981) #32	NCKAP1 (ENSCATG00000021627) #33	ENSCATG00000031243	DUSP19 (ENSCATG00000034242) #34	NUP35 (ENSCATG00000033109) #35	ENSCATG00000032907
Sooty mangabey	MODERN SPECIES	97												ENSCATG00000036409	ENSCATG00000036363	PHF3 (ENSCATG00000040194)	PTP4A1 (ENSCATG00000033428)	ENSCATG00000014578 #22	LGSN (ENSCATG00000000185)	ENSCATG00000024397	KHDRBS2 (ENSCATG00000042976)	FKBP1C (ENSCATG00000041274)	ENSCATG00000042307	ENSCATG00000036482	ENSCATG00000034019	RAB23 (ENSCATG00000027876)	BAG2 (ENSCATG00000043003)	ZNF451 (ENSCATG00000038473)	KIAA1586 (ENSCATG00000035835)	BEND6 (ENSCATG00000036894)	ENSCATG00000036494	DST (ENSCATG00000032609)	COL21A1 (ENSCATG00000034013)
Rhinopithecus	ANCESTRAL SPECIES	782														ENSGT00940000155080	ENSGT00940000154406.b.h	ENSGT00940000155392 #22	ENSGT00390000013639
Black snub-nosed monkey	MODERN SPECIES	747											MTRR (ENSRBIG00000034325)	FASTKD3 (ENSRBIG00000038391)	CFAP90 (ENSRBIG00000035722)	ADCY2 (ENSRBIG00000036082)	TENT4A (ENSRBIG00000027491)	UBE2E3 (ENSRBIG00000010045) #22
Golden snub-nosed monkey	DUPLICATION
Golden snub-nosed monkey	MODERN SPECIES	1411																UBE2E3 (ENSRROG00000039735) #22	ITGA4 (ENSRROG00000014136) #24	CERKL (ENSRROG00000029796) #25	NEUROD1 (ENSRROG00000009134) #26	ITPRID2 (ENSRROG00000038077) #27	PPP1R1C (ENSRROG00000044834) #28	PDE1A (ENSRROG00000034879) #30
Golden snub-nosed monkey	MODERN SPECIES	1143														PHF3 (ENSRROG00000032884)	PTP4A1 (ENSRROG00000040157)	ENSRROG00000039797 #22	LGSN (ENSRROG00000043841)
Hominoidea	ANCESTRAL SPECIES	15	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.F	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000008766.d	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00910000148307	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b.a	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Gibbon	MODERN SPECIES	14	RBM45 (ENSNLEG00000006080) #8	OSBPL6 (ENSNLEG00000006086) #10	ENSNLEG00000006120 #11	PJVK (ENSNLEG00000006144) #12	FKBP7 (ENSNLEG00000006149) #13	PLEKHA3 (ENSNLEG00000006150) #14	ENSNLEG00000034742	ENSNLEG00000032978 #16	ENSNLEG00000006175	ENSNLEG00000006205 #18	SESTD1 (ENSNLEG00000006220) #19	ENSNLEG00000032947	ZNF385B (ENSNLEG00000006238) #20	CWC22 (ENSNLEG00000006248) #21	ENSNLEG00000018748	UBE2E3 (ENSNLEG00000006290) #22	ITGA4 (ENSNLEG00000006295) #24	CERKL (ENSNLEG00000006310) #25	NEUROD1 (ENSNLEG00000033713) #26	ITPRID2 (ENSNLEG00000006323) #27	PPP1R1C (ENSNLEG00000032277) #28	PDE1A (ENSNLEG00000006357) #30	ENSNLEG00000032805	DNAJC10 (ENSNLEG00000006363) #31	FRZB (ENSNLEG00000006370) #32	NCKAP1 (ENSNLEG00000006378) #33	ENSNLEG00000006419	DUSP19 (ENSNLEG00000035662) #34	NUP35 (ENSNLEG00000035026) #35	ENSNLEG00000027494	ZNF804A (ENSNLEG00000006437) #37
Hominidae	ANCESTRAL SPECIES	17	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000008766.d	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b.a	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Orangutan	DUPLICATION
Orangutan	MODERN SPECIES	15	AGPS (ENSPPYG00000012969)	TTC30B (ENSPPYG00000034101)	TTC30A (ENSPPYG00000038583)	PDE11A (ENSPPYG00000012972)	RBM45 (ENSPPYG00000012974) #8	OSBPL6 (ENSPPYG00000012975) #10	ENSPPYG00000012976 #11	PJVK (ENSPPYG00000012977) #12	FKBP7 (ENSPPYG00000012978) #13	PLEKHA3 (ENSPPYG00000012979) #14	TTN (ENSPPYG00000012980)	CCDC141 (ENSPPYG00000012981) #18	SESTD1 (ENSPPYG00000012982) #19	ZNF385B (ENSPPYG00000012984) #20	CWC22 (ENSPPYG00000012986) #21	ENSPPYG00000012987 #22	ITGA4 (ENSPPYG00000012988) #24	CERKL (ENSPPYG00000012990) #25	ENSPPYG00000032736	ITPRID2 (ENSPPYG00000012991) #27	PPP1R1C (ENSPPYG00000037215) #28	PDE1A (ENSPPYG00000012993) #30	DNAJC10 (ENSPPYG00000012994) #31	FRZB (ENSPPYG00000012995) #32	NCKAP1 (ENSPPYG00000012996) #33	DUSP19 (ENSPPYG00000032241) #34	NUP35 (ENSPPYG00000012998) #35	ENSPPYG00000037472	ZNF804A (ENSPPYG00000013000) #37	ENSPPYG00000012999	ENSPPYG00000039774
Orangutan	MODERN SPECIES	242	MSL3 (ENSPPYG00000020123)	FRMPD4 (ENSPPYG00000020124)	PRPS2 (ENSPPYG00000020125)	TLR7 (ENSPPYG00000035228)	TLR8 (ENSPPYG00000020126)	TMSB4X (ENSPPYG00000020127)	ENSPPYG00000020128	ATXN3L (ENSPPYG00000020129)	EGFL6 (ENSPPYG00000020130)	TCEANC (ENSPPYG00000020132)	RAB9A (ENSPPYG00000037977)	ENSPPYG00000035830	OFD1 (ENSPPYG00000020134)	GPM6B (ENSPPYG00000040776)	GEMIN8 (ENSPPYG00000020136)	ENSPPYG00000040686 #22	GLRA2 (ENSPPYG00000020137)	ENSPPYG00000018154	ENSPPYG00000020138	MOSPD2 (ENSPPYG00000020139)	ASB9 (ENSPPYG00000020140)	ASB11 (ENSPPYG00000020141)	PIGA (ENSPPYG00000020142)	VEGFD (ENSPPYG00000020143)	PIR (ENSPPYG00000020144)	BMX (ENSPPYG00000020145)	ACE2 (ENSPPYG00000020146)	CLTRN (ENSPPYG00000020147)	ENSPPYG00000031174	CA5B (ENSPPYG00000020149)	ZRSR2 (ENSPPYG00000020150)
Homo/Pan/Gorilla group	ANCESTRAL SPECIES	14	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000008766.d	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000153339.a.a.b.b.b.a	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f
Gorilla	MODERN SPECIES	15	ENSGGOG00000040822	ENSGGOG00000040977 #7	RBM45 (ENSGGOG00000013981) #8	OSBPL6 (ENSGGOG00000008266) #10	PRKRA (ENSGGOG00000005754) #11	PJVK (ENSGGOG00000011071) #12	FKBP7 (ENSGGOG00000034906) #13	PLEKHA3 (ENSGGOG00000012980) #14	TTN (ENSGGOG00000007919)	ENSGGOG00000014468 #18	SESTD1 (ENSGGOG00000000846) #19	ZNF385B (ENSGGOG00000008716) #20	CWC22 (ENSGGOG00000012484) #21	ENSGGOG00000028547	ENSGGOG00000040929	UBE2E3 (ENSGGOG00000037471) #22	ITGA4 (ENSGGOG00000025254) #24	CERKL (ENSGGOG00000003773) #25	NEUROD1 (ENSGGOG00000027940) #26	ITPRID2 (ENSGGOG00000002179) #27	PPP1R1C (ENSGGOG00000025936) #28	PDE1A (ENSGGOG00000009366) #30	DNAJC10 (ENSGGOG00000012233) #31	FRZB (ENSGGOG00000005758) #32	NCKAP1 (ENSGGOG00000004501) #33	ENSGGOG00000024442	DUSP19 (ENSGGOG00000038351) #34	NUP35 (ENSGGOG00000009919) #35	ENSGGOG00000023305	ENSGGOG00000024061	ENSGGOG00000041007
Homo/Pan group	ANCESTRAL SPECIES	13	ENSGT00390000010991.f.b	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000008766.d	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Pan	ANCESTRAL SPECIES	12	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618.o.b #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00390000008766.d	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00950000182841.b.a.a.b.a.a.b.b.a.b.d.b.a.a.a	ENSGT00390000005534.b.b.c.b.a.a.b.a.b	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00390000016470.c.d	ENSGT00910000146981	ENSGT00390000007542	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a
Bonobo	MODERN SPECIES	15	RBM45 (ENSPPAG00000026278) #8	OSBPL6 (ENSPPAG00000025663) #10	PRKRA (ENSPPAG00000043306) #11	PJVK (ENSPPAG00000037654) #12	FKBP7 (ENSPPAG00000043985) #13	PLEKHA3 (ENSPPAG00000036608) #14	ENSPPAG00000034897	ENSPPAG00000037260 #16	ENSPPAG00000026551 #18	SESTD1 (ENSPPAG00000037546) #19	ENSPPAG00000034038	ZNF385B (ENSPPAG00000035510) #20	CWC22 (ENSPPAG00000027833) #21	ENSPPAG00000032120	ENSPPAG00000029324	UBE2E3 (ENSPPAG00000028940) #22	ITGA4 (ENSPPAG00000036435) #24	ENSPPAG00000040188 #25	ENSPPAG00000036141	ITPRID2 (ENSPPAG00000028437) #27	PPP1R1C (ENSPPAG00000043723) #28	PDE1A (ENSPPAG00000036247) #30	DNAJC10 (ENSPPAG00000040507) #31	FRZB (ENSPPAG00000031754) #32	NCKAP1 (ENSPPAG00000042498) #33	ENSPPAG00000042706	DUSP19 (ENSPPAG00000029833) #34	NUP35 (ENSPPAG00000036316) #35	ENSPPAG00000012576	ENSPPAG00000034166	ENSPPAG00000018454
Chimpanzee	MODERN SPECIES	15	ENSPTRG00000051577 #7	RBM45 (ENSPTRG00000012686) #8	OSBPL6 (ENSPTRG00000012687) #10	PRKRA (ENSPTRG00000012688) #11	PJVK (ENSPTRG00000029126) #12	FKBP7 (ENSPTRG00000012689) #13	PLEKHA3 (ENSPTRG00000012690) #14	TTN (ENSPTRG00000012691)	CCDC141 (ENSPTRG00000012693) #18	SESTD1 (ENSPTRG00000012695) #19	ENSPTRG00000047055	ZNF385B (ENSPTRG00000012696) #20	CWC22 (ENSPTRG00000012698) #21	ENSPTRG00000030979	ENSPTRG00000043792	UBE2E3 (ENSPTRG00000051132) #22	ITGA4 (ENSPTRG00000012700) #24	CERKL (ENSPTRG00000012701) #25	ENSPTRG00000046836	ITPRID2 (ENSPTRG00000012703) #27	PPP1R1C (ENSPTRG00000012705) #28	PDE1A (ENSPTRG00000012706) #30	DNAJC10 (ENSPTRG00000012707) #31	FRZB (ENSPTRG00000012708) #32	NCKAP1 (ENSPTRG00000012709) #33	DUSP19 (ENSPTRG00000052061) #34	NUP35 (ENSPTRG00000012711) #35	ENSPTRG00000049314	ENSPTRG00000043003	ENSPTRG00000045793	ZNF804A (ENSPTRG00000012712) #37
Human	MODERN SPECIES	11	AGPS (ENSG00000018510)	TTC30B (ENSG00000196659)	TTC30A (ENSG00000197557)	PDE11A (ENSG00000128655)	RBM45 (ENSG00000155636) #8	OSBPL6 (ENSG00000079156) #10	PRKRA (ENSG00000180228) #11	PJVK (ENSG00000204311) #12	FKBP7 (ENSG00000079150) #13	PLEKHA3 (ENSG00000116095) #14	TTN (ENSG00000155657)	CCDC141 (ENSG00000163492) #18	SESTD1 (ENSG00000187231) #19	ZNF385B (ENSG00000144331) #20	CWC22 (ENSG00000163510) #21	UBE2E3 (ENSG00000170035) #22	ITGA4 (ENSG00000115232) #24	CERKL (ENSG00000188452) #25	NEUROD1 (ENSG00000162992) #26	ITPRID2 (ENSG00000138434) #27	PPP1R1C (ENSG00000150722) #28	PDE1A (ENSG00000115252) #30	DNAJC10 (ENSG00000077232) #31	FRZB (ENSG00000162998) #32	NCKAP1 (ENSG00000061676) #33	DUSP19 (ENSG00000162999) #34	NUP35 (ENSG00000163002) #35	ZNF804A (ENSG00000170396) #37	FSIP2 (ENSG00000188738)	ZC3H15 (ENSG00000065548)	ITGAV (ENSG00000138448)
Tarsier	DUPLICATION
Tarsier	MODERN SPECIES	6269															ADGRL4 (ENSTSYG00000008437)	ENSTSYG00000030363 #22
Tarsier	MODERN SPECIES	7266																ENSTSYG00000035670 #22
Tarsier	MODERN SPECIES	6082											N4BP1 (ENSTSYG00000025531)	SIAH1 (ENSTSYG00000028257)	LONP2 (ENSTSYG00000001400)	ABCC11 (ENSTSYG00000001398)	ABCC12 (ENSTSYG00000001389)	ENSTSYG00000027992 #22
Tarsier	MODERN SPECIES	4178															ENSTSYG00000026635 #21	UBE2E3 (ENSTSYG00000002281) #22
Atlantogenata	ANCESTRAL SPECIES	9	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00390000005421	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Afrotheria	ANCESTRAL SPECIES	1	ENSGT00390000010116	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Afrotheria_a	ANCESTRAL SPECIES	1	ENSGT00390000010116.p	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00680000100018.a.a.a	ENSGT00390000015818.f	ENSGT00940000158361
Hyrax	MODERN SPECIES	5346																UBE2E3 (ENSPCAG00000005915) #22
Elephant	MODERN SPECIES	301	PDE11A (ENSLAFG00000005234)	ENSLAFG00000027524 #7	RBM45 (ENSLAFG00000007464) #8	OSBPL6 (ENSLAFG00000011141) #10	PRKRA (ENSLAFG00000026940) #11	PJVK (ENSLAFG00000016082) #12	FKBP7 (ENSLAFG00000016244) #13	PLEKHA3 (ENSLAFG00000006385) #14	ENSLAFG00000016250 ##17	ENSLAFG00000030749	ENSLAFG00000016368 #18	SESTD1 (ENSLAFG00000010863) #19	ENSLAFG00000029425	ZNF385B (ENSLAFG00000016135) #20	CWC22 (ENSLAFG00000014802) #21	UBE2E3 (ENSLAFG00000007452) #22	ITGA4 (ENSLAFG00000000610) #24	ENSLAFG00000027079	CERKL (ENSLAFG00000031356) #25	NEUROD1 (ENSLAFG00000000612) #26	SUMO4 (ENSLAFG00000029061)	ITPRID2 (ENSLAFG00000006221) #27	PPP1R1C (ENSLAFG00000006229) #28	PDE1A (ENSLAFG00000013038) #30	DNAJC10 (ENSLAFG00000007093) #31	FRZB (ENSLAFG00000030213) #32	NCKAP1 (ENSLAFG00000005981) #33	DUSP19 (ENSLAFG00000008594) #34	NUP35 (ENSLAFG00000008155) #35	ENSLAFG00000027122	ZNF804A (ENSLAFG00000006588) #37
Xenarthra	ANCESTRAL SPECIES																	ENSGT00940000155392 #22
Sloth	MODERN SPECIES	5800																UBE2E3 (ENSCHOG00000007325) #22
Armadillo	MODERN SPECIES	3580	RBM45 (ENSDNOG00000001973) #8	OSBPL6 (ENSDNOG00000016352) #10	PRKRA (ENSDNOG00000019701) #11	PJVK (ENSDNOG00000019700) #12	FKBP7 (ENSDNOG00000035521) #13	PLEKHA3 (ENSDNOG00000002717) #14	ENSDNOG00000031177 #16	ENSDNOG00000048097	CCDC141 (ENSDNOG00000031268) #18	SESTD1 (ENSDNOG00000014724) #19	ENSDNOG00000019250 #20	ENSDNOG00000037949	ENSDNOG00000003020 #21	ENSDNOG00000038848	ENSDNOG00000037893	UBE2E3 (ENSDNOG00000031663) #22	ENSDNOG00000038751	ITGA4 (ENSDNOG00000019241) #24	CERKL (ENSDNOG00000010687) #25	NEUROD1 (ENSDNOG00000012297) #26	ITPRID2 (ENSDNOG00000003139) #27	ENSDNOG00000049117 #28	ENSDNOG00000032574	PDE1A (ENSDNOG00000014285) #30	DNAJC10 (ENSDNOG00000013020) #31	FRZB (ENSDNOG00000035728) #32	NCKAP1 (ENSDNOG00000011695) #33	DUSP19 (ENSDNOG00000000396) #34
Marsupialia	ANCESTRAL SPECIES	5	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.b #21	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B.a.a #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000005569.w.b.a	ENSGT00390000015818	ENSGT00940000158361
Opossum	DUPLICATION
Opossum	MODERN SPECIES	3	OSBPL6 (ENSMODG00000009796) #10	PRKRA (ENSMODG00000009823) #11	PJVK (ENSMODG00000009854) #12	FKBP7 (ENSMODG00000009862) #13	PLEKHA3 (ENSMODG00000009871) #14	ENSMODG00000039210 #15	ENSMODG00000047084 ##17	ENSMODG00000042738 ##17	ENSMODG00000045021	CCDC141 (ENSMODG00000010153) #18	SESTD1 (ENSMODG00000010177) #19	ZNF385B (ENSMODG00000010201) #20	ENSMODG00000050455 ##20	ENSMODG00000010233 #21	ENSMODG00000049378	UBE2E3 (ENSMODG00000010301) #22	ITGA4 (ENSMODG00000010369) #24	CERKL (ENSMODG00000010384) #25	NEUROD1 (ENSMODG00000010392) #26	ITPRID2 (ENSMODG00000010421) #27	ENSMODG00000010425 #28	ENSMODG00000042197	ENSMODG00000010443 #30	ENSMODG00000010451	ENSMODG00000024713	ENSMODG00000039428	DNAJC10 (ENSMODG00000010507) #31	FRZB (ENSMODG00000010519) #32	NCKAP1 (ENSMODG00000010556) #33	DUSP19 (ENSMODG00000042542) #34	NUP35 (ENSMODG00000010578) #35
Opossum	MODERN SPECIES	5	GLIS2 (ENSMODG00000016375)	VASN (ENSMODG00000016371)	CORO7 (ENSMODG00000016364)	DNAJA3 (ENSMODG00000016357)	NMRAL1 (ENSMODG00000016355)	NDUFAB1 (ENSMODG00000016352)	TNRC6A (ENSMODG00000016348)	ENSMODG00000016318	CACNG3 (ENSMODG00000016315)	ENSMODG00000041902	PRKCB (ENSMODG00000016311)	ENSMODG00000028910	AQP8 (ENSMODG00000016305)	LCMT1 (ENSMODG00000016303)	ARHGAP17 (ENSMODG00000016300)	ENSMODG00000016293 #22	SLC5A11 (ENSMODG00000016289)	GRID2IP (ENSMODG00000016282)	ZDHHC4 (ENSMODG00000038460)	INTS15 (ENSMODG00000016277)	ENSMODG00000039075	ENSMODG00000029028	SLC44A1 (ENSMODG00000016274)	ABCA1 (ENSMODG00000016266)	ENSMODG00000016257	ENSMODG00000016256	ENSMODG00000024609	ENSMODG00000040094	ENSMODG00000038722	ENSMODG00000016254	ENSMODG00000044653
Marsupialia_b	ANCESTRAL SPECIES	3	ENSGT00940000162151	ENSGT00940000157883.a.b.e.a #7	ENSGT00680000100059 #8	ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B.b #21	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B.a.a #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00920000149145.x	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000005569.w.b.a	ENSGT00390000015818
Tasmanian devil	MODERN SPECIES	2	RBM45 (ENSSHAG00000005667) #8	OSBPL6 (ENSSHAG00000007874) #10	PRKRA (ENSSHAG00000028806) #11	PJVK (ENSSHAG00000010083) #12	FKBP7 (ENSSHAG00000010178) #13	PLEKHA3 (ENSSHAG00000010292) #14	ENSSHAG00000026623 #16	ENSSHAG00000021730 ##17	ENSSHAG00000023191 ##17	ENSSHAG00000011991 ##17	CCDC141 (ENSSHAG00000012666) #18	SESTD1 (ENSSHAG00000013771) #19	ZNF385B (ENSSHAG00000015010) #20	ENSSHAG00000016053 #20	CWC22 (ENSSHAG00000016596) #21	UBE2E3 (ENSSHAG00000026116) #22	ITGA4 (ENSSHAG00000014028) #24	CERKL (ENSSHAG00000014484) #25	NEUROD1 (ENSSHAG00000027544) #26	ITPRID2 (ENSSHAG00000016063) #27	ENSSHAG00000024868	ENSSHAG00000001468 #30	DNAJC10 (ENSSHAG00000004345) #31	FRZB (ENSSHAG00000006582) #32	DUSP19 (ENSSHAG00000029936) #34	NCKAP1 (ENSSHAG00000007873) #33	ENSSHAG00000020746 #35	ENSSHAG00000031065	ENSSHAG00000030079	ENSSHAG00000028139	ENSSHAG00000021533
Diprotodontia	ANCESTRAL SPECIES	11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.b.a ##17	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B.a.a #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00920000149145.x	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000005569.w.b.a	ENSGT00390000015818
Wallaby	MODERN SPECIES	7852																ENSMEUG00000010201 #22
Diprotodontia_a	ANCESTRAL SPECIES	9	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850.fb #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.b.a ##17	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B.a.a #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00920000149145.x	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000005569.w.b.a	ENSGT00390000015818
koala	MODERN SPECIES	114															ENSPCIG00000009903 #21	UBE2E3 (ENSPCIG00000011165) #22	ITGA4 (ENSPCIG00000000473) #24	CERKL (ENSPCIG00000000576) #25	NEUROD1 (ENSPCIG00000014845) #26	ITPRID2 (ENSPCIG00000014835) #27	PPP1R1C (ENSPCIG00000014830) #28	ENSPCIG00000014824	PDE1A (ENSPCIG00000014791) #30	DNAJC10 (ENSPCIG00000023771) #31	FRZB (ENSPCIG00000012990) #32	NCKAP1 (ENSPCIG00000019118) #33	DUSP19 (ENSPCIG00000015497) #34	NUP35 (ENSPCIG00000015482) #35	ENSPCIG00000008133	PCDH20 (ENSPCIG00000011484)	ENSPCIG00000011482
Common wonbat	MODERN SPECIES	1018	OSBPL6 (ENSVURG00010018808) #10	PRKRA (ENSVURG00010018771) #11	PJVK (ENSVURG00010018750) #12	FKBP7 (ENSVURG00010018739) #13	ENSVURG00010018731 #15	ENSVURG00010018717 ##17	ENSVURG00010018707 #16	ENSVURG00010018702 ##17	ENSVURG00010018699	ENSVURG00010018694	CCDC141 (ENSVURG00010018675) #18	SESTD1 (ENSVURG00010018662) #19	ZNF385B (ENSVURG00010018627) #20	ENSVURG00010018614 ##20	ENSVURG00010018397 #21	UBE2E3 (ENSVURG00010018376) #22	ITGA4 (ENSVURG00010018355) #24	CERKL (ENSVURG00010018329) #25	ITPRID2 (ENSVURG00010018289) #27	PPP1R1C (ENSVURG00010018283) #28	ENSVURG00010018272	PDE1A (ENSVURG00010018247) #30	DNAJC10 (ENSVURG00010018215) #31	FRZB (ENSVURG00010018207) #32	NCKAP1 (ENSVURG00010018153) #33	ENSVURG00010018137	DUSP19 (ENSVURG00010018130) #34	NUP35 (ENSVURG00010018122) #35	ENSVURG00010018108	ZNF804A (ENSVURG00010018094) #37	ENSVURG00010018084
Platypus	MODERN SPECIES	20	PDE11A (ENSOANG00000008626)	OSBPL6 (ENSOANG00000008628) #10	PRKRA (ENSOANG00000008630) #11	PJVK (ENSOANG00000008632) #12	FKBP7 (ENSOANG00000044696) #13	PLEKHA3 (ENSOANG00000008635) #14	ENSOANG00000045033 #16	ENSOANG00000045923 ##17	ENSOANG00000043772 ##17	ENSOANG00000008636 #17	ENSOANG00000045935	CCDC141 (ENSOANG00000008645) #18	SESTD1 (ENSOANG00000008646) #19	ZNF385B (ENSOANG00000008647) #20	CWC22 (ENSOANG00000008649) #21	UBE2E3 (ENSOANG00000042940) #22	ITGA4 (ENSOANG00000003633) #24	CERKL (ENSOANG00000003632) #25	NEUROD1 (ENSOANG00000040350) #26	ITPRID2 (ENSOANG00000003629) #27	PPP1R1C (ENSOANG00000003628) #28	PDE1A (ENSOANG00000003627) #30	DNAJC10 (ENSOANG00000003626) #31	ENSOANG00000045636	NCKAP1 (ENSOANG00000003624) #33	DUSP19 (ENSOANG00000014252) #34	ENSOANG00000039450	POLR1B (ENSOANG00000003621)	TFPI (ENSOANG00000047983)	ENSOANG00000003149	ITGAV (ENSOANG00000015741)
Sauria	ANCESTRAL SPECIES	32														ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Archelosauria	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT00940000177836	ENSGT00940000169215	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00940000169289	ENSGT00940000164697.a	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Cryptodira	ANCESTRAL SPECIES	5	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT00940000177542	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Chinese turtle	MODERN SPECIES	978																UBE2E3 (ENSPSIG00000002104) #22	ENSPSIG00000000991	ENSPSIG00000002106	ITGA4 (ENSPSIG00000002107) #24	CERKL (ENSPSIG00000002109) #25	NEUROD1 (ENSPSIG00000001006) #26	ITPRID2 (ENSPSIG00000002117) #27	PPP1R1C (ENSPSIG00000002118) #28	ENSPSIG00000001021	PDE1A (ENSPSIG00000002119) #30	DNAJC10 (ENSPSIG00000002121) #31	FRZB (ENSPSIG00000002127) #32	NCKAP1 (ENSPSIG00000002128) #33	DUSP19 (ENSPSIG00000002144) #34	NUP35 (ENSPSIG00000002146) #35	ENSPSIG00000001035
Testudinoidea	ANCESTRAL SPECIES	11	ENSGT01100000263532.A.a.a.a.b.c.a.b #16	ENSGT01100000263532.A.a.a.a.b.c.b.d ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT00940000177542	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Emydidae	ANCESTRAL SPECIES	4	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.J	ENSGT01100000263523.G.a.b.b	ENSGT01100000263523.G.a.a	ENSGT01100000263532.A.a.a.a.b.c.b.d ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT00940000169215	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Three-toed box turtle	MODERN SPECIES	25	ENSTMTG00000017496 ##17	ENSTMTG00000017593	ENSTMTG00000017718	ENSTMTG00000017734	ENSTMTG00000017765 ##17	ENSTMTG00000017794 ##17	ENSTMTG00000017805	ENSTMTG00000017823 #17	ENSTMTG00000017841 ##17	ENSTMTG00000017851	CCDC141 (ENSTMTG00000017876) #18	SESTD1 (ENSTMTG00000017903) #19	ENSTMTG00000017940 #20	ENSTMTG00000017952 ##20	CWC22 (ENSTMTG00000017989) #21	UBE2E3 (ENSTMTG00000018280) #22	ITGA4 (ENSTMTG00000018348) #24	CERKL (ENSTMTG00000019208) #25	NEUROD1 (ENSTMTG00000019552) #26	ITPRID2 (ENSTMTG00000019559) #27	PDE1A (ENSTMTG00000019591) #30	DNAJC10 (ENSTMTG00000019601) #31	FRZB (ENSTMTG00000019648) #32	NCKAP1 (ENSTMTG00000019670) #33	DUSP19 (ENSTMTG00000019708) #34	NUP35 (ENSTMTG00000019724) #35	ZNF804A (ENSTMTG00000019736) #37	ENSTMTG00000003545	ZC3H15 (ENSTMTG00000003559)	ITGAV (ENSTMTG00000003571)	FAM171B (ENSTMTG00000003610)
painted turtle	MODERN SPECIES	2363	ENSCPBG00000002402 ##17	ENSCPBG00000002331 ##17	ENSCPBG00000002302 #16	ENSCPBG00000002274 #16	ENSCPBG00000002238 ##17	ENSCPBG00000002192 ##17	ENSCPBG00000002177 ##17	ENSCPBG00000002167	ENSCPBG00000002120 #15	ENSCPBG00000002077	ENSCPBG00000001928	SESTD1 (ENSCPBG00000001861) #19	ZNF385B (ENSCPBG00000001823) #20	ENSCPBG00000001791	CWC22 (ENSCPBG00000001765) #21	UBE2E3 (ENSCPBG00000001727) #22	ITGA4 (ENSCPBG00000001693) #24	CERKL (ENSCPBG00000001652) #25	NEUROD1 (ENSCPBG00000001635) #26	ITPRID2 (ENSCPBG00000001615) #27	PPP1R1C (ENSCPBG00000001601) #28	PDE1A (ENSCPBG00000001524) #30	DNAJC10 (ENSCPBG00000001445) #31	FRZB (ENSCPBG00000001411) #32	NCKAP1 (ENSCPBG00000001346) #33	DUSP19 (ENSCPBG00000001319) #34	NUP35 (ENSCPBG00000001303) #35	ZNF804A (ENSCPBG00000001284) #37	ZC3H15 (ENSCPBG00000001108)
Testudinidae	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.a.a #16	ENSGT01100000263532.A.a.a.a.b.c.b.c.b ##17	ENSGT01100000263532.A.a.a.a.b.c.a.b #16	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.A.a.a.a.b.c.b.d ##17	ENSGT01040000241217	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT00940000177542	ENSGT01100000263532.B #17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Abingdon island giant tortoise	MODERN SPECIES	978	ENSCABG00000013166 #16	ENSCABG00000013161 ##17	ENSCABG00000013157 ##17	ENSCABG00000013151 ##17	ENSCABG00000013146 #17	ENSCABG00000013142 #17	ENSCABG00000013141	ENSCABG00000013139 #17	ENSCABG00000013136	CCDC141 (ENSCABG00000013130) #18	ENSCABG00000013127	ENSCABG00000013126 #19	ENSCABG00000013123 #19	ZNF385B (ENSCABG00000013121) #20	CWC22 (ENSCABG00000012917) #21	UBE2E3 (ENSCABG00000012893) #22	ITGA4 (ENSCABG00000012705) #24	ENSCABG00000012680 #25	ENSCABG00000012668 #25	NEUROD1 (ENSCABG00000012662) #26	ITPRID2 (ENSCABG00000012564) #27	PPP1R1C (ENSCABG00000012562) #28	PDE1A (ENSCABG00000012558) #30	DNAJC10 (ENSCABG00000012550) #31	ENSCABG00000012549	FRZB (ENSCABG00000012545) #32	NCKAP1 (ENSCABG00000010037) #33	DUSP19 (ENSCABG00000009975) #34	NUP35 (ENSCABG00000009967) #35
Goode s thornscrub tortoise	MODERN SPECIES	2	ENSGEVG00005018729 #16	ENSGEVG00005018686 ##17	ENSGEVG00005018664	ENSGEVG00005018628 ##17	ENSGEVG00005018601 ##17	ENSGEVG00005018576	ENSGEVG00005018556 ##17	ENSGEVG00005018533	ENSGEVG00005018481 #17	ENSGEVG00005018444	CCDC141 (ENSGEVG00005018389) #18	ENSGEVG00005018329 #19	ENSGEVG00005018300 #19	ZNF385B (ENSGEVG00005018266) #20	CWC22 (ENSGEVG00005018222) #21	UBE2E3 (ENSGEVG00005018193) #22	ITGA4 (ENSGEVG00005017865) #24	ENSGEVG00005017710 #25	ENSGEVG00005017619 #25	NEUROD1 (ENSGEVG00005017594) #26	ITPRID2 (ENSGEVG00005017562) #27	PPP1R1C (ENSGEVG00005017538) #28	PDE1A (ENSGEVG00005017469) #30	DNAJC10 (ENSGEVG00005017402) #31	FRZB (ENSGEVG00005017291) #32	NCKAP1 (ENSGEVG00005017205) #33	DUSP19 (ENSGEVG00005017177) #34	NUP35 (ENSGEVG00005017158) #35	ZNF804A (ENSGEVG00005017126) #37	ZC3H15 (ENSGEVG00005017092)	ITGAV (ENSGEVG00005017026)
Archosauria	ANCESTRAL SPECIES	6	ENSGT01100000263523.D	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT00940000177836	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00940000169289	ENSGT00940000164697.a	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Australian saltwater crocodile	MODERN SPECIES	66	ENSCPRG00005013581	ENSCPRG00005013578 ##17	ENSCPRG00005013575 ##17	ENSCPRG00005013574	ENSCPRG00005013567 ##17	ENSCPRG00005013563 ##17	ENSCPRG00005013560	ENSCPRG00005013558	ENSCPRG00005013556 #17	ENSCPRG00005013551	CCDC141 (ENSCPRG00005013539) #18	ENSCPRG00005013534	SESTD1 (ENSCPRG00005013514) #19	ZNF385B (ENSCPRG00005013503) #20	CWC22 (ENSCPRG00005013489) #21	UBE2E3 (ENSCPRG00005013483) #22	ENSCPRG00005013479	ITGA4 (ENSCPRG00005013472) #24	ENSCPRG00005013463 #25	ENSCPRG00005013458 #25	NEUROD1 (ENSCPRG00005013456) #26	ITPRID2 (ENSCPRG00005013443) #27	PPP1R1C (ENSCPRG00005013438) #28	PDE1A (ENSCPRG00005013426) #30	DNAJC10 (ENSCPRG00005013416) #31	FRZB (ENSCPRG00005013413) #32	NCKAP1 (ENSCPRG00005012620) #33	DUSP19 (ENSCPRG00005012407) #34	NUP35 (ENSCPRG00005012397) #35	ZNF804A (ENSCPRG00005012383) #37	ZC3H15 (ENSCPRG00005012336)
Aves	ANCESTRAL SPECIES	8	ENSGT01100000263523.J	ENSGT01100000263523.H	ENSGT01100000263523.D	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT00940000177836	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
African ostrich	MODERN SPECIES	659	ENSSCUG00000010733	ENSSCUG00000010740	ENSSCUG00000010759 ##17	ENSSCUG00000010761 #16	ENSSCUG00000010765 ##17	ENSSCUG00000010767 ##17	ENSSCUG00000010769	ENSSCUG00000010773	ENSSCUG00000010775	ENSSCUG00000010779 #17	ENSSCUG00000010781	CCDC141 (ENSSCUG00000010787) #18	SESTD1 (ENSSCUG00000010790) #19	ZNF385B (ENSSCUG00000010798) #20	CWC22 (ENSSCUG00000010807) #21	UBE2E3 (ENSSCUG00000010813) #22	ITGA4 (ENSSCUG00000010817) #24	CERKL (ENSSCUG00000010820) #25	ENSSCUG00000010822 #26	ITPRID2 (ENSSCUG00000010830) #27	PPP1R1C (ENSSCUG00000010843) #28	PDE1A (ENSSCUG00000010845) #30	DNAJC10 (ENSSCUG00000010848) #31	FRZB (ENSSCUG00000010852) #32	NCKAP1 (ENSSCUG00000010855) #33	DUSP19 (ENSSCUG00000010859) #34	NUP35 (ENSSCUG00000010861) #35
Neognathae	ANCESTRAL SPECIES	6	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263523.D	ENSGT00940000177836	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619
Neognathae_b	ANCESTRAL SPECIES	7	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT01100000263532.A.a.b ##17	ENSGT01030000239236	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000157578.p #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939
Neognathae_c	ANCESTRAL SPECIES	9	ENSGT01100000263523.E	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.I.a.b	ENSGT01100000263523.G.a.b.b	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01030000239236	ENSGT01100000263532.B #17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000157578.p #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619
Golden eagle	MODERN SPECIES	22	ENSACCG00020003357	ENSACCG00020003292	ENSACCG00020003250 #16	ENSACCG00020003230 ##17	ENSACCG00020003208 ##17	ENSACCG00020003186 ##17	ENSACCG00020003180	ENSACCG00020003156 ##17	ENSACCG00020003130 ##17	ENSACCG00020003116 #17	ENSACCG00020003103	ENSACCG00020003079 #18	SESTD1 (ENSACCG00020003049) #19	ZNF385B (ENSACCG00020003027) #20	CWC22 (ENSACCG00020002902) #21	UBE2E3 (ENSACCG00020002761) #22	ENSACCG00020002749 #24	ENSACCG00020002721 #24	ENSACCG00020002697 #25	ENSACCG00020002671 #25	NEUROD1 (ENSACCG00020002645) #26	ITPRID2 (ENSACCG00020002630) #27	PDE1A (ENSACCG00020002575) #30	DNAJC10 (ENSACCG00020002475) #31	PIKFYVE (ENSACCG00020002433)	IDH1 (ENSACCG00020002412)	ENSACCG00020002399	ENSACCG00020002387	ENSACCG00020002374	ENSACCG00020002359	NBEAL1 (ENSACCG00020001867)
Kakapo	MODERN SPECIES	22	ENSSHBG00005000787	ENSSHBG00005000771	ENSSHBG00005000750 #15	ENSSHBG00005000726 ##17	ENSSHBG00005009083 ##17	ENSSHBG00005009073 ##17	ENSSHBG00005009064 ##17	ENSSHBG00005009035 ##17	ENSSHBG00005008964	ENSSHBG00005008955 #17	ENSSHBG00005008948	CCDC141 (ENSSHBG00005008931) #18	SESTD1 (ENSSHBG00005008892) #19	ZNF385B (ENSSHBG00005008869) #20	CWC22 (ENSSHBG00005008856) #21	UBE2E3 (ENSSHBG00005008848) #22	ENSSHBG00005008841 #24	ENSSHBG00005008833 #24	ENSSHBG00005008821 #25	ENSSHBG00005008817 #25	ENSSHBG00005008779 #25	NEUROD1 (ENSSHBG00005008762) #26	ITPRID2 (ENSSHBG00005007068) #27	PPP1R1C (ENSSHBG00005006867) #28	PDE1A (ENSSHBG00005005190) #30	ENSSHBG00005005130 #31	ENSSHBG00005005122 #31	ENSSHBG00005005117	IDH1 (ENSSHBG00005005110)	ENSSHBG00005005104	C2orf80 (ENSSHBG00005005096)
Passeriformes	ANCESTRAL SPECIES	6	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263523.E	ENSGT01100000263523.D	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01030000239236	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000157578.p #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939
Great tit	MODERN SPECIES	27	ENSPMJG00000018398	ENSPMJG00000018397	ENSPMJG00000018396	ENSPMJG00000018390 #16	ENSPMJG00000018387 ##17	ENSPMJG00000018386 ##17	ENSPMJG00000018385 ##17	ENSPMJG00000018384	ENSPMJG00000018382 ##17	ENSPMJG00000018381 #17	ENSPMJG00000018380	CCDC141 (ENSPMJG00000018376) #18	SESTD1 (ENSPMJG00000018374) #19	ZNF385B (ENSPMJG00000018370) #20	CWC22 (ENSPMJG00000018367) #21	UBE2E3 (ENSPMJG00000018364) #22	ITGA4 (ENSPMJG00000018362) #24	ENSPMJG00000018360 #25	ENSPMJG00000018358 #25	ENSPMJG00000018357 #25	NEUROD1 (ENSPMJG00000018356) #26	ITPRID2 (ENSPMJG00000018354) #27	PPP1R1C (ENSPMJG00000018351) #28	PDE1A (ENSPMJG00000018348) #30	DNAJC10 (ENSPMJG00000018346) #31	PIKFYVE (ENSPMJG00000018335)	IDH1 (ENSPMJG00000018333)	ENSPMJG00000018332	NBEAL1 (ENSPMJG00000018330)	ENSPMJG00000018329	CYP20A1 (ENSPMJG00000018328)
Passeriformes_d	ANCESTRAL SPECIES	8	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263523.D.a	ENSGT01030000239236	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089
Flycatcher	MODERN SPECIES	26	ENSFALG00000023965 ##17	ENSFALG00000027359 ##17	ENSFALG00000028151 ##17	ENSFALG00000027794	ENSFALG00000028880	ENSFALG00000025407	ENSFALG00000027203 ##17	ENSFALG00000024824	ENSFALG00000027966 #17	ENSFALG00000025573 ##17	ENSFALG00000023910	CCDC141 (ENSFALG00000003477) #18	SESTD1 (ENSFALG00000003480) #19	ZNF385B (ENSFALG00000003483) #20	CWC22 (ENSFALG00000003495) #21	UBE2E3 (ENSFALG00000003520) #22	ITGA4 (ENSFALG00000003536) #24	ENSFALG00000024444 #25	ENSFALG00000023961	ENSFALG00000003556 #25	NEUROD1 (ENSFALG00000015273) #26	ITPRID2 (ENSFALG00000003571) #27	PPP1R1C (ENSFALG00000028115) #28	PDE1A (ENSFALG00000003586) #30	ENSFALG00000003612	ENSFALG00000027401 #31	ENSFALG00000003616 #31	ENSFALG00000003629	ENSFALG00000003640	ENSFALG00000023124	ENSFALG00000023047
Passeriformes_g	ANCESTRAL SPECIES	9	ENSGT01100000263523.G.a.b.b	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089
Medium ground finch	MODERN SPECIES	1	ENSGFOG00000007233	ENSGFOG00000002584	ENSGFOG00000002594	ENSGFOG00000002606 ##17	ENSGFOG00000002620 ##17	ENSGFOG00000002650 ##17	ENSGFOG00000002696 ##17	ENSGFOG00000002728	ENSGFOG00000002766	ENSGFOG00000002781 #17	CCDC141 (ENSGFOG00000002806) #18	SESTD1 (ENSGFOG00000002928) #19	ENSGFOG00000002977	ZNF385B (ENSGFOG00000002990) #20	CWC22 (ENSGFOG00000003009) #21	UBE2E3 (ENSGFOG00000003037) #22	ITGA4 (ENSGFOG00000003107) #24	ENSGFOG00000004303 #25	NEUROD1 (ENSGFOG00000004323) #26	ITPRID2 (ENSGFOG00000004331) #27	PPP1R1C (ENSGFOG00000004599) #28	PDE1A (ENSGFOG00000004634) #30	DNAJC10 (ENSGFOG00000004722) #31	PIKFYVE (ENSGFOG00000004768)	IDH1 (ENSGFOG00000004936)	ENSGFOG00000004948	NBEAL1 (ENSGFOG00000005037)	ENSGFOG00000006136	CYP20A1 (ENSGFOG00000006144)	ABI2 (ENSGFOG00000006158)	RAPH1 (ENSGFOG00000006191)
Passeroidea	ANCESTRAL SPECIES	8	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.J	ENSGT01100000263523.G.a.b.b	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00940000177631	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041.n	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089
Zebra finch	MODERN SPECIES	29	ENSTGUG00000022753	ENSTGUG00000020806	ENSTGUG00000022812	ENSTGUG00000026972 ##17	ENSTGUG00000026482 #16	ENSTGUG00000018783 ##17	ENSTGUG00000019122 ##17	ENSTGUG00000023414	ENSTGUG00000024372 ##17	ENSTGUG00000022502 #17	ENSTGUG00000023081	CCDC141 (ENSTGUG00000009285) #18	SESTD1 (ENSTGUG00000009296) #19	ZNF385B (ENSTGUG00000009316) #20	CWC22 (ENSTGUG00000009340) #21	UBE2E3 (ENSTGUG00000023515) #22	ITGA4 (ENSTGUG00000009384) #24	CERKL (ENSTGUG00000009459) #25	NEUROD1 (ENSTGUG00000018920) #26	ITPRID2 (ENSTGUG00000009469) #27	PPP1R1C (ENSTGUG00000025209) #28	PDE1A (ENSTGUG00000009501) #30	DNAJC10 (ENSTGUG00000009565) #31	PIKFYVE (ENSTGUG00000009607)	ENSTGUG00000028065	IDH1 (ENSTGUG00000023800)	ENSTGUG00000018851	NBEAL1 (ENSTGUG00000029141)	ENSTGUG00000025723	CYP20A1 (ENSTGUG00000009709)	ABI2 (ENSTGUG00000009728)
Common canary	MODERN SPECIES	8	ENSSCAG00000000211	ENSSCAG00000000240 ##17	ENSSCAG00000000249 #16	ENSSCAG00000000272 ##17	ENSSCAG00000000282 ##17	ENSSCAG00000000292 ##17	ENSSCAG00000000317 ##17	ENSSCAG00000000338 #17	ENSSCAG00000000355 ##17	ENSSCAG00000000369	ENSSCAG00000000382 #18	SESTD1 (ENSSCAG00000000419) #19	ENSSCAG00000000430 #20	ENSSCAG00000000441 ##20	CWC22 (ENSSCAG00000000535) #21	UBE2E3 (ENSSCAG00000000814) #22	ITGA4 (ENSSCAG00000000942) #24	ENSSCAG00000001329 #25	ENSSCAG00000001339 #25	NEUROD1 (ENSSCAG00000001352) #26	ITPRID2 (ENSSCAG00000001386) #27	PPP1R1C (ENSSCAG00000001436) #28	PDE1A (ENSSCAG00000001471) #30	DNAJC10 (ENSSCAG00000001534) #31	PIKFYVE (ENSSCAG00000001572)	IDH1 (ENSSCAG00000001636)	ENSSCAG00000001645	NBEAL1 (ENSSCAG00000001665)	ENSSCAG00000001706	CYP20A1 (ENSSCAG00000001710)	ABI2 (ENSSCAG00000001723)
Galloanserae	ANCESTRAL SPECIES	7	ENSGT01100000263523.I.b	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT00940000171516	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT00940000177836	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939
Anatidae	ANCESTRAL SPECIES	10	ENSGT01100000263523.E.q	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.J	ENSGT01100000263523.G.a.b.b	ENSGT01100000263523.I.b	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00390000004840	ENSGT00940000163494.a.b.g.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939
Pink-footed goose	MODERN SPECIES	20	PLEKHA3 (ENSABRG00000003409) #14	ENSABRG00000003426	ENSABRG00000003603	ENSABRG00000004053 ##17	ENSABRG00000004141 #16	ENSABRG00000004180 ##17	ENSABRG00000004203	ENSABRG00000004301 ##17	ENSABRG00000004339 #17	ENSABRG00000004343 ##17	ENSABRG00000004369	CCDC141 (ENSABRG00000004385) #18	SESTD1 (ENSABRG00000004572) #19	ZNF385B (ENSABRG00000004629) #20	CWC22 (ENSABRG00000004650) #21	UBE2E3 (ENSABRG00000004707) #22	ITGA4 (ENSABRG00000004733) #24	CERKL (ENSABRG00000004753) #25	NEUROD1 (ENSABRG00000004771) #26	ITPRID2 (ENSABRG00000004783) #27	ENSABRG00000004846	PDE1A (ENSABRG00000004850) #30	DNAJC10 (ENSABRG00000004922) #31	PIKFYVE (ENSABRG00000005739)	IDH1 (ENSABRG00000006852)	ENSABRG00000006873	C2orf80 (ENSABRG00000006880)	ENSABRG00000006883	NBEAL1 (ENSABRG00000007015)	ENSABRG00000008369	ENSABRG00000008403
Duck	MODERN SPECIES	25	TFCP2L1 (ENSAPLG00000015648)	ENSAPLG00000015141	INHBB (ENSAPLG00000016916)	RALB (ENSAPLG00000017843)	ENSAPLG00000017402	EPB41L5 (ENSAPLG00000014391)	PTPN4 (ENSAPLG00000013704)	TMEM177 (ENSAPLG00000001672)	MRAS (ENSAPLG00000013435)	CNTNAP5 (ENSAPLG00000013229)	GYPC (ENSAPLG00000013213)	BIN1 (ENSAPLG00000012452)	CYP27C1 (ENSAPLG00000012186)	ERCC3 (ENSAPLG00000012068)	THSD7B (ENSAPLG00000002773)	UBE2E3 (ENSAPLG00000011305) #22	ITGA4 (ENSAPLG00000011547) #24	ENSAPLG00000026156 #25	ENSAPLG00000012428 #25	NEUROD1 (ENSAPLG00000020272) #26	ITPRID2 (ENSAPLG00000012488) #27	PPP1R1C (ENSAPLG00000028661) #28	PDE1A (ENSAPLG00000012827) #30	ENSAPLG00000013405 #31	ENSAPLG00000028706 #31	PIKFYVE (ENSAPLG00000014164)	IDH1 (ENSAPLG00000014810)	ENSAPLG00000015011	ENSAPLG00000018471	ENSAPLG00000024504	ENSAPLG00000017302
Phasianidae	ANCESTRAL SPECIES	8	ENSGT01100000263523.H	ENSGT01100000263523.I.a.b	ENSGT01100000263523.G.a.b.b	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT00940000177836	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552
Japanese quail	MODERN SPECIES	25	ENSCJPG00005017340	ENSCJPG00005017339	ENSCJPG00005017338 ##17	ENSCJPG00005017337 ##17	ENSCJPG00005017336 ##17	ENSCJPG00005017335	ENSCJPG00005017334	ENSCJPG00005017333 ##17	ENSCJPG00005017332	ENSCJPG00005017331 #17	ENSCJPG00005017330	CCDC141 (ENSCJPG00005017329) #18	SESTD1 (ENSCJPG00005017328) #19	ZNF385B (ENSCJPG00005017319) #20	CWC22 (ENSCJPG00005017318) #21	UBE2E3 (ENSCJPG00005017308) #22	ITGA4 (ENSCJPG00005016736) #24	CERKL (ENSCJPG00005016733) #25	NEUROD1 (ENSCJPG00005016724) #26	ITPRID2 (ENSCJPG00005016723) #27	PPP1R1C (ENSCJPG00005016722) #28	PDE1A (ENSCJPG00005016432) #30	DNAJC10 (ENSCJPG00005016431) #31	PIKFYVE (ENSCJPG00005016284)	IDH1 (ENSCJPG00005016283)	ENSCJPG00005016282	NBEAL1 (ENSCJPG00005015909)	ENSCJPG00005015898	CYP20A1 (ENSCJPG00005015897)	ABI2 (ENSCJPG00005015864)	EEF1B2 (ENSCJPG00005015859)
Phasianidae_b	ANCESTRAL SPECIES	8	ENSGT00940000155850 #14	ENSGT01100000263523.C.a.b	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.I.a.b	ENSGT01100000263523.G.a.b.b	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.s #20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.o #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043 #30	ENSGT00940000155558 #31	ENSGT00940000156307.b	ENSGT00390000012547.b	ENSGT00940000154107.b.j.b	ENSGT00940000155041	ENSGT00390000017619	ENSGT00500000044939	ENSGT00940000156089	ENSGT00940000156552
Chicken	MODERN SPECIES	36	NFE2L2 (ENSGALG00010024107)	AGPS (ENSGALG00010024011)	TTC30B (ENSGALG00010026261)	ENSGALG00010023920	ENSGALG00010023848 #7	RBM45 (ENSGALG00010023793) #8	OSBPL6 (ENSGALG00010023623) #10	PJVK (ENSGALG00010023559) #12	FKBP7 (ENSGALG00010023533) #13	PLEKHA3 (ENSGALG00010023496) #14	TTN (ENSGALG00010022969)	CCDC141 (ENSGALG00010026242) #18	SESTD1 (ENSGALG00010026183) #19	ZNF385B (ENSGALG00010026154) #20	CWC22 (ENSGALG00010026114) #21	UBE2E3 (ENSGALG00010026078) #22	ITGA4 (ENSGALG00010026062) #24	CERKL (ENSGALG00010026044) #25	NEUROD1 (ENSGALG00010026026) #26	ITPRID2 (ENSGALG00010022406) #27	PPP1R1C (ENSGALG00010022396) #28	PDE1A (ENSGALG00010022334) #30	DNAJC10 (ENSGALG00010022293) #31	PIKFYVE (ENSGALG00010022245)	IDH1 (ENSGALG00010022213)	ENSGALG00010022181	NBEAL1 (ENSGALG00010022149)	ENSGALG00010022124	CYP20A1 (ENSGALG00010022116)	ABI2 (ENSGALG00010022079)	RAPH1 (ENSGALG00010022033)
Turkey	MODERN SPECIES	27	ENSMGAG00000021104	ENSMGAG00000021039	ENSMGAG00000020675	ENSMGAG00000022630	ENSMGAG00000021022 ##17	ENSMGAG00000020990 ##17	ENSMGAG00000018806 ##17	ENSMGAG00000022099 ##17	ENSMGAG00000019104 #17	ENSMGAG00000019342 ##17	ENSMGAG00000016742	CCDC141 (ENSMGAG00000009304) #18	SESTD1 (ENSMGAG00000009282) #19	ZNF385B (ENSMGAG00000009267) #20	CWC22 (ENSMGAG00000009220) #21	UBE2E3 (ENSMGAG00000009214) #22	ENSMGAG00000009146 #24	CERKL (ENSMGAG00000009130) #25	ITPRID2 (ENSMGAG00000009083) #27	PPP1R1C (ENSMGAG00000009069) #28	PDE1A (ENSMGAG00000009032) #30	ENSMGAG00000008939	ENSMGAG00000008920	ENSMGAG00000008985 #31	ENSMGAG00000019768	NBEAL1 (ENSMGAG00000008870)	ENSMGAG00000019797	CYP20A1 (ENSMGAG00000008831)	ABI2 (ENSMGAG00000008821)	RAPH1 (ENSMGAG00000008794)	CD28 (ENSMGAG00000008783)
Lepidosauria	ANCESTRAL SPECIES	7	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263532.B #17	ENSGT01100000263523.A	ENSGT00940000164697.a	ENSGT00440000038972 #18	ENSGT00940000169289	ENSGT00730000111148 #19	ENSGT00940000155611.r.a ##20	ENSGT00940000155611.s #20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043.m #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
tuatara	MODERN SPECIES	930																UBE2E3 (ENSSPUG00000006625) #22
Episquamata	ANCESTRAL SPECIES		ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.F	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263523.A	ENSGT00940000164697.a	ENSGT00440000038972 #18	ENSGT00940000169289	ENSGT00730000111148 #19	ENSGT00940000155611.r.a ##20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043.m #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Laterata	ANCESTRAL SPECIES	30	ENSGT01100000263523.G.a.b.b	ENSGT01100000263532.C.c.a ##17	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b.b ##17	ENSGT01100000263532.A.a.a.b.b.a.a ##17	ENSGT01100000263532.A.a.a.a.a.a ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00940000169289	ENSGT00940000164697.a	ENSGT00730000111148 #19	ENSGT00940000155611.r.a ##20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532.b #27	ENSGT00940000158532.a #27	ENSGT00940000160192 #28	ENSGT00940000157043.m #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361
Argentine black and white tegu	MODERN SPECIES	18	ENSSMRG00000018243	ENSSMRG00000018247 ##17	ENSSMRG00000018248 #16	ENSSMRG00000018249 ##17	ENSSMRG00000018250 ##17	ENSSMRG00000018251 ##17	ENSSMRG00000018252 ##17	ENSSMRG00000018253 ##17	ENSSMRG00000018254 #17	ENSSMRG00000018255	ENSSMRG00000018256	SESTD1 (ENSSMRG00000018257) #19	ZNF385B (ENSSMRG00000018260) ##20	CWC22 (ENSSMRG00000018262) #21	ENSSMRG00000018591	UBE2E3 (ENSSMRG00000018592) #22	ITGA4 (ENSSMRG00000018596) #24	CERKL (ENSSMRG00000018614) #25	NEUROD1 (ENSSMRG00000018615) #26	ENSSMRG00000018616	ITPRID2 (ENSSMRG00000018617) #27	ENSSMRG00000018618	PDE1A (ENSSMRG00000018619) #30	ENSSMRG00000018621	DNAJC10 (ENSSMRG00000018622) #31	FRZB (ENSSMRG00000018623) #32	NCKAP1 (ENSSMRG00000018624) #33	DUSP19 (ENSSMRG00000018625) #34	NUP35 (ENSSMRG00000018626) #35	ENSSMRG00000018627	DUSP14 (ENSSMRG00000018628)
Common wall lizard	MODERN SPECIES		ENSPMRG00000003242 ##17	ENSPMRG00000003232 ##17	ENSPMRG00000003226 ##17	ENSPMRG00000003218	ENSPMRG00000003213	ENSPMRG00000003208	ENSPMRG00000003199 ##17	ENSPMRG00000003193	CCDC141 (ENSPMRG00000003187) #18	ENSPMRG00000003178	SESTD1 (ENSPMRG00000003163) #19	ENSPMRG00000003151 ##20	ENSPMRG00000003144 ##20	CWC22 (ENSPMRG00000003124) #21	ENSPMRG00000003111	UBE2E3 (ENSPMRG00000003099) #22	ITGA4 (ENSPMRG00000003077) #24	CERKL (ENSPMRG00000003043) #25	NEUROD1 (ENSPMRG00000003030) #26	ENSPMRG00000003022 #27	ENSPMRG00000003012 #27	PPP1R1C (ENSPMRG00000003001) #28	PDE1A (ENSPMRG00000002946) #30	DNAJC10 (ENSPMRG00000002833) #31	FRZB (ENSPMRG00000002787) #32	NCKAP1 (ENSPMRG00000002254) #33	DUSP19 (ENSPMRG00000002183) #34	NUP35 (ENSPMRG00000002172) #35	ZNF804A (ENSPMRG00000002167) #37	ZC3H15 (ENSPMRG00000002164)	ITGAV (ENSPMRG00000000852)
Toxicofera	ANCESTRAL SPECIES	10	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.A.a.a.a.b.c.b ##17	ENSGT01100000263532.A.a.a.b.b.a.b.b ##17	ENSGT01100000263532.A.a.b ##17	ENSGT01100000263532.A.b ##17	ENSGT00940000169215	ENSGT01100000263532.A.a.a.a.b.c.a #16	ENSGT01100000263532.A.a.a.b.b.b ##17	ENSGT01100000263523.A	ENSGT00940000164697.a	ENSGT00440000038972 #18	ENSGT00730000111148 #19	ENSGT00940000155611.r.a ##20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578 #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043.m #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Lizard	MODERN SPECIES	1067																UBE2E3 (ENSACAG00000011267) #22	ENSACAG00000044402	ITGA4 (ENSACAG00000008954) #24	ENSACAG00000026349 #25
Elapidae	ANCESTRAL SPECIES		ENSGT00940000156791 #10	ENSGT00940000157618 #11	ENSGT00950000183140.a.b #12	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00940000164697.a	ENSGT00730000111148.h #19	ENSGT00940000155611.r.a ##20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.y #25	ENSGT00940000160478 #26	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043.m #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Elapidae_a	ANCESTRAL SPECIES	5	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.I.a.b.a	ENSGT01100000263532.B #17	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148.h #19	ENSGT00940000169289	ENSGT00730000111148.g #19	ENSGT00940000155611.r.a ##20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.y #25	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043.m #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a	ENSGT00390000006826
Acanthophiinae	ANCESTRAL SPECIES	7	ENSGT00940000159964 #13	ENSGT00940000155850 #14	ENSGT01100000263532.C.c.b #15	ENSGT01100000263523.I.a.a.b	ENSGT01100000263523.I.a.b.a	ENSGT01100000263532.A.a.a.a.b.d ##17	ENSGT01100000263532.B #17	ENSGT01100000263523.A	ENSGT00440000038972 #18	ENSGT00730000111148.h #19	ENSGT00940000169289	ENSGT00730000111148.g #19	ENSGT00940000155611.r.a ##20	ENSGT00940000155611.r.b ##20	ENSGT00940000153458.B #21	ENSGT00940000155392 #22	ENSGT00940000158443 #24	ENSGT00940000157578.y #25	ENSGT00940000158532 #27	ENSGT00940000160192 #28	ENSGT00940000157043.m #30	ENSGT00940000155558 #31	ENSGT00940000160494 #32	ENSGT00390000016619.a #33	ENSGT00940000156472 #34	ENSGT00390000005923 #35	ENSGT00940000160909 #37	ENSGT00610000086153.ic.b	ENSGT00390000015818	ENSGT00940000158361	ENSGT00950000183184.a.a
Eastern brown snake	MODERN SPECIES	7	ENSPTXG00000003569 ##17	ENSPTXG00000003567 #16	ENSPTXG00000003565 ##17	ENSPTXG00000003560 ##17	ENSPTXG00000003559	ENSPTXG00000003557 ##17	ENSPTXG00000003556 ##17	ENSPTXG00000003554 ##17	ENSPTXG00000003553 #17	ENSPTXG00000003551	ENSPTXG00000003548	SESTD1 (ENSPTXG00000003547) #19	ZNF385B (ENSPTXG00000003535) ##20	CWC22 (ENSPTXG00000003531) #21	ENSPTXG00000003529	UBE2E3 (ENSPTXG00000003527) #22	ITGA4 (ENSPTXG00000002926) #24	CERKL (ENSPTXG00000001423) #25	ITPRID2 (ENSPTXG00000001379) #27	PPP1R1C (ENSPTXG00000001374) #28	PDE1A (ENSPTXG00000001283) #30	DNAJC10 (ENSPTXG00000001248) #31	FRZB (ENSPTXG00000001240) #32	NCKAP1 (ENSPTXG00000001229) #33	DUSP19 (ENSPTXG00000001224) #34	NUP35 (ENSPTXG00000001221) #35	ZNF804A (ENSPTXG00000001217) #37	ENSPTXG00000001214	ZC3H15 (ENSPTXG00000001209)	ITGAV (ENSPTXG00000001189)	FAM171B (ENSPTXG00000001154)
Mainland tiger snake	MODERN SPECIES	21	ENSNSUG00000015614	ENSNSUG00000015613 ##17	ENSNSUG00000015612 ##17	ENSNSUG00000015611	ENSNSUG00000015610	ENSNSUG00000015609 #15	ENSNSUG00000015608 #17	ENSNSUG00000015607 ##17	ENSNSUG00000015606 #17	ENSNSUG00000015605	ENSNSUG00000015604 #18	SESTD1 (ENSNSUG00000015439) #19	ENSNSUG00000015437 ##20	ENSNSUG00000015436 ##20	CWC22 (ENSNSUG00000015265) #21	UBE2E3 (ENSNSUG00000015264) #22	ITGA4 (ENSNSUG00000015263) #24	ENSNSUG00000015262 #25	ENSNSUG00000015261 #25	ENSNSUG00000015260	ITPRID2 (ENSNSUG00000015258) #27	PPP1R1C (ENSNSUG00000015257) #28	PDE1A (ENSNSUG00000015256) #30	DNAJC10 (ENSNSUG00000015254) #31	ENSNSUG00000015253	ENSNSUG00000015252	FRZB (ENSNSUG00000015250) #32	NCKAP1 (ENSNSUG00000014293) #33	DUSP19 (ENSNSUG00000014291) #34	NUP35 (ENSNSUG00000014290) #35	ZNF804A (ENSNSUG00000014289) #37
Indian cobra	DUPLICATION
Indian cobra	MODERN SPECIES		ENSNNAG00000000027	ENSNNAG00000000016	ENSNNAG00000000007 #15	ENSNNAG00000013672 ##17	ENSNNAG00000013663 #16	ENSNNAG00000013623 ##17	ENSNNAG00000013606 ##17	ENSNNAG00000013569	ENSNNAG00000013550 #16	ENSNNAG00000013531 ##17	ENSNNAG00000013517	ENSNNAG00000013430	SESTD1 (ENSNNAG00000012555) #19	ZNF385B (ENSNNAG00000012458) ##20	CWC22 (ENSNNAG00000011837) #21	ENSNNAG00000011732 #22	ITGA4 (ENSNNAG00000011667) #24	CERKL (ENSNNAG00000011612) #25	NEUROD1 (ENSNNAG00000011596) #26	ITPRID2 (ENSNNAG00000011531) #27	PPP1R1C (ENSNNAG00000011507) #28	PDE1A (ENSNNAG00000011410) #30	DNAJC10 (ENSNNAG00000011336) #31	FRZB (ENSNNAG00000011317) #32	NCKAP1 (ENSNNAG00000011137) #33	DUSP19 (ENSNNAG00000011109) #34	NUP35 (ENSNNAG00000011052) #35	ZNF804A (ENSNNAG00000011014) #37	ZC3H15 (ENSNNAG00000010966)	ITGAV (ENSNNAG00000010863)	FAM171B (ENSNNAG00000010828)
Indian cobra	MODERN SPECIES	3	ENSNNAG00000007631	ENSNNAG00000007595	KCNMB2 (ENSNNAG00000016680)	TBL1XR1 (ENSNNAG00000016658)	NAALADL2 (ENSNNAG00000016653)	NLGN1 (ENSNNAG00000016645)	SPATA16 (ENSNNAG00000016632)	ECT2 (ENSNNAG00000016490)	NCEH1 (ENSNNAG00000016440)	TNFSF10 (ENSNNAG00000016427)	GHSR (ENSNNAG00000016421)	FNDC3B (ENSNNAG00000016356)	TMEM212 (ENSNNAG00000016341)	ENSNNAG00000016338	PLD1 (ENSNNAG00000016268)	ENSNNAG00000016239 #22	TNIK (ENSNNAG00000012451)	SLC2A2 (ENSNNAG00000011868)	EIF5A2 (ENSNNAG00000011836)	RPL22L1 (ENSNNAG00000011816)	SLC7A14 (ENSNNAG00000011697)	CLDN11 (ENSNNAG00000011665)	SKIL (ENSNNAG00000011649)	PRKCI (ENSNNAG00000011515)	ENSNNAG00000011488	ENSNNAG00000011458	PHC3 (ENSNNAG00000011208)	GPR160 (ENSNNAG00000011176)	ENSNNAG00000011166	ENSNNAG00000011143	SAMD7 (ENSNNAG00000011108)