Laurasiatheria	ANCESTRAL SPECIES	9	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b #32	ENSGT01050000244868.a.a.a.a.b ##30	ENSGT00390000017382	ENSGT00940000154745.a
Laurasiatheria_a	ANCESTRAL SPECIES	11	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT01050000244868.a.a.a.a.a.a ##30
Artiodactyla	ANCESTRAL SPECIES	7	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00940000173695	ENSGT00390000017382	ENSGT00940000154745.a	ENSGT00390000014118	ENSGT00940000156959.B	ENSGT00940000157531	ENSGT00940000164320	ENSGT00940000159211.C	ENSGT00940000159789
Artiodactyla_a	ANCESTRAL SPECIES	6	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00390000006980 #8	ENSGT00390000004339.f #7
Artiodactyla_b	ANCESTRAL SPECIES	7	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.a.a #9	ENSGT00390000006980 #8
Pecora	ANCESTRAL SPECIES	5	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36
Percora_a	ANCESTRAL SPECIES	27	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36
Bovidae	ANCESTRAL SPECIES	5	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36
Caprinae	ANCESTRAL SPECIES	27	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36
Goat	MODERN SPECIES	2	MED22 (ENSCHIG00000025808) #7	SURF6 (ENSCHIG00000025220) #8	ENSCHIG00000016256 #9	DIPK1B (ENSCHIG00000014246) #10	AGPAT2 (ENSCHIG00000014858) #11	EGFL7 (ENSCHIG00000023457) #12	NOTCH1 (ENSCHIG00000021033) #13	SEC16A (ENSCHIG00000020286) #14	INPP5E (ENSCHIG00000004726) #15	PMPCA (ENSCHIG00000013065) #16	ENTR1 (ENSCHIG00000018825) #17	SNAPC4 (ENSCHIG00000013796) #18	CARD9 (ENSCHIG00000013779) #19	DNLZ (ENSCHIG00000019744) #20	ENSCHIG00000017713 #21	QSOX2 (ENSCHIG00000014232) #22	LHX3 (ENSCHIG00000024793) #23	TMEM250 (ENSCHIG00000010273) #24	NACC2 (ENSCHIG00000007966) #25	UBAC1 (ENSCHIG00000018504) #26	CAMSAP1 (ENSCHIG00000016116) #27	KCNT1 (ENSCHIG00000007884) #28	ENSCHIG00000018572 #29	ENSCHIG00000025929 #30	GLT6D1 (ENSCHIG00000019179) #31	PAEP (ENSCHIG00000014239) #32	ENSCHIG00000023482 #33	GBGT1 (ENSCHIG00000011247) #34	RALGDS (ENSCHIG00000015793) #35	CEL (ENSCHIG00000025027) #36	GTF3C5 (ENSCHIG00000024162) #37
Rambouillet Sheep	MODERN SPECIES	19	ENSOARG00020002455 #9	DIPK1B (ENSOARG00020002483) #10	ENSOARG00020002513 #11	EGFL7 (ENSOARG00020002558) #12	ENSOARG00020002591	ENSOARG00020002602	NOTCH1 (ENSOARG00020002622) #13	INPP5E (ENSOARG00020002704) #15	PMPCA (ENSOARG00020002792) #16	ENTR1 (ENSOARG00020002831) #17	SNAPC4 (ENSOARG00020003067) #18	CARD9 (ENSOARG00020004236) #19	ENSOARG00020004267	GPSM1 (ENSOARG00020004303) #21	ENSOARG00020004433	QSOX2 (ENSOARG00020004598) #22	LHX3 (ENSOARG00020004662) #23	TMEM250 (ENSOARG00020004761) #24	NACC2 (ENSOARG00020004779) #25	UBAC1 (ENSOARG00020004817) #26	PAEP (ENSOARG00020004839) #32	CAMSAP1 (ENSOARG00020004888) #27	KCNT1 (ENSOARG00020005353) #28	ENSOARG00020013271 #30	GLT6D1 (ENSOARG00020013449) #31	ENSOARG00020013569 ##30	ENSOARG00020014156 #33	GBGT1 (ENSOARG00020014323) #34	RALGDS (ENSOARG00020014951) #35	CEL (ENSOARG00020016231) #36	GTF3C5 (ENSOARG00020016366) #37
Bovinae	ANCESTRAL SPECIES	4	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36
Bos	ANCESTRAL SPECIES	5	ENSGT00950000182858.A.a.a #9	ENSGT00390000015224.c.a.a.b.e.a.a	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36
Bos_b	ANCESTRAL SPECIES	16	ENSGT00950000182858.A.a.a #9	ENSGT00390000015224.c.a.a.b.e.a.a	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36
Hybrid Bos Indicus	MODERN SPECIES	2	ENSBIXG00005029668 #9	ENSBIXG00005029644	DIPK1B (ENSBIXG00005029611) #10	ENSBIXG00005029589 #11	ENSBIXG00005029555 #12	NOTCH1 (ENSBIXG00005029490) #13	SEC16A (ENSBIXG00005007954) #14	INPP5E (ENSBIXG00005000112) #15	PMPCA (ENSBIXG00005008108) #16	ENTR1 (ENSBIXG00005008201) #17	SNAPC4 (ENSBIXG00005008329) #18	CARD9 (ENSBIXG00005008353) #19	DNLZ (ENSBIXG00005008367) #20	GPSM1 (ENSBIXG00005008412) #21	ENSBIXG00005008484	QSOX2 (ENSBIXG00005008520) #22	LHX3 (ENSBIXG00005008551) #23	TMEM250 (ENSBIXG00005008570) #24	NACC2 (ENSBIXG00005008585) #25	UBAC1 (ENSBIXG00005008614) #26	CAMSAP1 (ENSBIXG00005008646) #27	KCNT1 (ENSBIXG00005010453) #28	ENSBIXG00005010677 #29	ENSBIXG00005000638 #30	GLT6D1 (ENSBIXG00005010707) #31	ENSBIXG00005010722 #32	ENSBIXG00005010741 ##30	ENSBIXG00005010799 #33	ENSBIXG00005010804	GBGT1 (ENSBIXG00005010899) #34	RALGDS (ENSBIXG00005011070) #35
Cow	MODERN SPECIES	2	ENSBTAG00000030281	DIPK1B (ENSBTAG00000021928) #10	AGPAT2 (ENSBTAG00000025161) #11	EGFL7 (ENSBTAG00000030278) #12	ENSBTAG00000049379	NOTCH1 (ENSBTAG00000022799) #13	SEC16A (ENSBTAG00000023933) #14	INPP5E (ENSBTAG00000001354) #15	PMPCA (ENSBTAG00000001353) #16	ENTR1 (ENSBTAG00000001352) #17	SNAPC4 (ENSBTAG00000000054) #18	CARD9 (ENSBTAG00000006572) #19	DNLZ (ENSBTAG00000012880) #20	GPSM1 (ENSBTAG00000018799) #21	ENSBTAG00000023064	QSOX2 (ENSBTAG00000011129) #22	LHX3 (ENSBTAG00000011124) #23	TMEM250 (ENSBTAG00000046939)	NACC2 (ENSBTAG00000020490) #25	UBAC1 (ENSBTAG00000039851) #26	CAMSAP1 (ENSBTAG00000006008) #27	KCNT1 (ENSBTAG00000018975) #28	LCN9 (ENSBTAG00000038972) #30	GLT6D1 (ENSBTAG00000020249) #31	PAEP (ENSBTAG00000014678) #32	ENSBTAG00000048091 ##30	ENSBTAG00000000893 #33	GBGT1 (ENSBTAG00000030319) #34	RALGDS (ENSBTAG00000004194) #35	CEL (ENSBTAG00000007486) #36	GTF3C5 (ENSBTAG00000021373) #37
Bos_a	ANCESTRAL SPECIES	23	ENSGT00950000182858.A.a.a #9	ENSGT00390000015224.c.a.a.b.e.a.a	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.a.a.b #33	ENSGT00950000182858.A.b.b #34	ENSGT00940000153181.z #35	ENSGT00940000156231 #36	ENSGT00390000004458 #37
Domestic yak	MODERN SPECIES	28	ENSBGRG00000025928	DIPK1B (ENSBGRG00000025911) #10	AGPAT2 (ENSBGRG00000025897) #11	ENSBGRG00000025875 #12	NOTCH1 (ENSBGRG00000025848) #13	SEC16A (ENSBGRG00000025640) #14	INPP5E (ENSBGRG00000025512) #15	PMPCA (ENSBGRG00000025447) #16	ENTR1 (ENSBGRG00000025355) #17	ENSBGRG00000025344	SNAPC4 (ENSBGRG00000025195) #18	CARD9 (ENSBGRG00000025118) #19	DNLZ (ENSBGRG00000025104) #20	GPSM1 (ENSBGRG00000024972) #21	ENSBGRG00000024934	QSOX2 (ENSBGRG00000024893) #22	LHX3 (ENSBGRG00000024850) #23	ENSBGRG00000024840	NACC2 (ENSBGRG00000024826) #25	UBAC1 (ENSBGRG00000024753) #26	CAMSAP1 (ENSBGRG00000024559) #27	KCNT1 (ENSBGRG00000019473) #28	ENSBGRG00000019236 #29	ENSBGRG00000019170 #30	GLT6D1 (ENSBGRG00000019100) #31	ENSBGRG00000018918 #32	ENSBGRG00000018826 #33	GBGT1 (ENSBGRG00000018685) #34	RALGDS (ENSBGRG00000016946) #35	CEL (ENSBGRG00000016811) #36	GTF3C5 (ENSBGRG00000016199) #37
Wild yak	MODERN SPECIES	161		ENSBMUG00000001057	DIPK1B (ENSBMUG00000001082) #10	AGPAT2 (ENSBMUG00000001095) #11	EGFL7 (ENSBMUG00000001124) #12	NOTCH1 (ENSBMUG00000002343) #13	SEC16A (ENSBMUG00000003595) #14	INPP5E (ENSBMUG00000004106) #15	PMPCA (ENSBMUG00000004156) #16	ENTR1 (ENSBMUG00000004170) #17	SNAPC4 (ENSBMUG00000004338) #18	CARD9 (ENSBMUG00000004473) #19	DNLZ (ENSBMUG00000004493) #20	GPSM1 (ENSBMUG00000004502) #21	ENSBMUG00000004556	QSOX2 (ENSBMUG00000004633) #22	LHX3 (ENSBMUG00000004664) #23	ENSBMUG00000004673 #24	NACC2 (ENSBMUG00000004700) #25	UBAC1 (ENSBMUG00000004715) #26	CAMSAP1 (ENSBMUG00000004848) #27	KCNT1 (ENSBMUG00000005258) #28	ENSBMUG00000005389 #30	GLT6D1 (ENSBMUG00000005396) #31	ENSBMUG00000005471 #32	ENSBMUG00000005526 #33
American bison	MODERN SPECIES	2421																QSOX2 (ENSBBBG00000021303) #22	ENSBBBG00000021307 #23
Siberian musk deer	MODERN SPECIES	1178	MED22 (ENSMMSG00000019115) #7	SURF6 (ENSMMSG00000019063) #8	DIPK1B (ENSMMSG00000018999) #10	AGPAT2 (ENSMMSG00000018937) #11	EGFL7 (ENSMMSG00000018878) #12	NOTCH1 (ENSMMSG00000018769) #13	SEC16A (ENSMMSG00000018596) #14	INPP5E (ENSMMSG00000018533) #15	PMPCA (ENSMMSG00000018461) #16	ENTR1 (ENSMMSG00000018277) #17	SNAPC4 (ENSMMSG00000018179) #18	CARD9 (ENSMMSG00000018040) #19	DNLZ (ENSMMSG00000018005) #20	GPSM1 (ENSMMSG00000017853) #21	ENSMMSG00000017799	QSOX2 (ENSMMSG00000017697) #22	LHX3 (ENSMMSG00000017607) #23	NACC2 (ENSMMSG00000017566) #25	UBAC1 (ENSMMSG00000017512) #26	CAMSAP1 (ENSMMSG00000017438) #27	KCNT1 (ENSMMSG00000011544) #28	ENSMMSG00000011276 #30	GLT6D1 (ENSMMSG00000011226) #31	ENSMMSG00000011134 #32	ENSMMSG00000011095 ##30	ENSMMSG00000011070 #33	GBGT1 (ENSMMSG00000010991) #34	RALGDS (ENSMMSG00000010851) #35	CEL (ENSMMSG00000010762) #36	GTF3C5 (ENSMMSG00000010368) #37	GFI1B (ENSMMSG00000010068)
Yarkand deer	MODERN SPECIES	2	MED22 (ENSCHYG00000009429) #7	SURF6 (ENSCHYG00000009401) #8	ENSCHYG00000009352 #9	DIPK1B (ENSCHYG00000009252) #10	AGPAT2 (ENSCHYG00000009123) #11	ENSCHYG00000008811 #12	NOTCH1 (ENSCHYG00000008626) #13	SEC16A (ENSCHYG00000007686) #14	INPP5E (ENSCHYG00000007535) #15	PMPCA (ENSCHYG00000007436) #16	ENTR1 (ENSCHYG00000007198) #17	SNAPC4 (ENSCHYG00000007022) #18	CARD9 (ENSCHYG00000006923) #19	GPSM1 (ENSCHYG00000006855) #21	ENSCHYG00000006716	QSOX2 (ENSCHYG00000006603) #22	LHX3 (ENSCHYG00000026603) #23	TMEM250 (ENSCHYG00000026594) #24	NACC2 (ENSCHYG00000026588) #25	UBAC1 (ENSCHYG00000026555) #26	CAMSAP1 (ENSCHYG00000026516) #27	KCNT1 (ENSCHYG00000025895) #28	SOHLH1 (ENSCHYG00000025814) #29	ENSCHYG00000025799 #30	GLT6D1 (ENSCHYG00000025780) #31	ENSCHYG00000025740 #32	ENSCHYG00000025684 ##30	ENSCHYG00000025640 #33	ENSCHYG00000025629	GBGT1 (ENSCHYG00000025531) #34	RALGDS (ENSCHYG00000025294) #35
Cetacea	ANCESTRAL SPECIES	9	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00950000182858.A.a.a #9	ENSGT00390000006980 #8	ENSGT00390000004339.f #7
Odontoceti	ANCESTRAL SPECIES	8	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00390000006980 #8	ENSGT00390000004339.f #7	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800
Odontoceti_a	ANCESTRAL SPECIES	19	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00390000006980 #8	ENSGT00390000004339.f #7	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800
Odontoceti_b	ANCESTRAL SPECIES	8	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00390000006980 #8	ENSGT00390000004339.f #7	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800
Monodontidae	ANCESTRAL SPECIES	5	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00390000006980 #8	ENSGT00390000004339.f #7	ENSGT00940000153294.m.b	ENSGT00530000064194	ENSGT00390000016800	ENSGT00530000064123
Narwhal	MODERN SPECIES	312	LCN6 (ENSMMNG00015018885) ##30	ENSMMNG00015018813 ##30	DIPK1B (ENSMMNG00015018734) #10	AGPAT2 (ENSMMNG00015018689) #11	EGFL7 (ENSMMNG00015018637) #12	NOTCH1 (ENSMMNG00015018566) #13	SEC16A (ENSMMNG00015018406) #14	INPP5E (ENSMMNG00015018352) #15	PMPCA (ENSMMNG00015018250) #16	ENTR1 (ENSMMNG00015018088) #17	SNAPC4 (ENSMMNG00015017988) #18	CARD9 (ENSMMNG00015017932) #19	DNLZ (ENSMMNG00015017904) #20	GPSM1 (ENSMMNG00015017768) #21	ENSMMNG00015017632	QSOX2 (ENSMMNG00015017566) #22	LHX3 (ENSMMNG00015017493) #23	TMEM250 (ENSMMNG00015017465) #24	NACC2 (ENSMMNG00015017441) #25	UBAC1 (ENSMMNG00015017402) #26	CAMSAP1 (ENSMMNG00015017305) #27	KCNT1 (ENSMMNG00015015607) #28	ENSMMNG00015015234 #29	ENSMMNG00015015219 ##30	ENSMMNG00015015203 ##30	SURF6 (ENSMMNG00015015192) #8	MED22 (ENSMMNG00015015176) #7	ENSMMNG00015015148	ENSMMNG00015015131	SURF1 (ENSMMNG00015015113)	SURF2 (ENSMMNG00015015101)
Beluga whale	MODERN SPECIES	19	LCN6 (ENSDLEG00000016024) ##30	ENSDLEG00000016061	FAM69B (ENSDLEG00000016090) #10	AGPAT2 (ENSDLEG00000016099) #11	EGFL7 (ENSDLEG00000016110) #12	NOTCH1 (ENSDLEG00000016186) #13	SEC16A (ENSDLEG00000016491) #14	INPP5E (ENSDLEG00000019359) #15	PMPCA (ENSDLEG00000019404) #16	SDCCAG3 (ENSDLEG00000019648) #17	SNAPC4 (ENSDLEG00000019669) #18	CARD9 (ENSDLEG00000019684) #19	DNLZ (ENSDLEG00000019697) #20	GPSM1 (ENSDLEG00000019707) #21	ENSDLEG00000000142	QSOX2 (ENSDLEG00000000181) #22	LHX3 (ENSDLEG00000000268) #23	TMEM250 (ENSDLEG00000000366) #24	NACC2 (ENSDLEG00000000381) #25	UBAC1 (ENSDLEG00000000420) #26	CAMSAP1 (ENSDLEG00000000466) #27	KCNT1 (ENSDLEG00000001178) #28	ENSDLEG00000003306 #29	PAEP (ENSDLEG00000003315) #32	ENSDLEG00000003325 ##30	SURF6 (ENSDLEG00000003331) #8	MED22 (ENSDLEG00000003336) ##7	RPL7A (ENSDLEG00000003348)	SURF1 (ENSDLEG00000003370)	ENSDLEG00000003378	SURF4 (ENSDLEG00000003390)
Vaquita	MODERN SPECIES	17	LCN6 (ENSPSNG00000002714) ##30	LCN10 (ENSPSNG00000002748) ##30	DIPK1B (ENSPSNG00000002782) #10	AGPAT2 (ENSPSNG00000002833) #11	EGFL7 (ENSPSNG00000002877) #12	NOTCH1 (ENSPSNG00000002953) #13	SEC16A (ENSPSNG00000003074) #14	INPP5E (ENSPSNG00000003142) #15	PMPCA (ENSPSNG00000003191) #16	ENTR1 (ENSPSNG00000003257) #17	SNAPC4 (ENSPSNG00000003425) #18	CARD9 (ENSPSNG00000003517) #19	DNLZ (ENSPSNG00000003537) #20	GPSM1 (ENSPSNG00000003585) #21	ENSPSNG00000003644	QSOX2 (ENSPSNG00000003669) #22	LHX3 (ENSPSNG00000003704) #23	TMEM250 (ENSPSNG00000003733) #24	NACC2 (ENSPSNG00000003746) #25	UBAC1 (ENSPSNG00000003773) #26	CAMSAP1 (ENSPSNG00000003852) #27	ENSPSNG00000003959	KCNT1 (ENSPSNG00000004784) #28	ENSPSNG00000006678 #29	ENSPSNG00000006708 #32	ENSPSNG00000006760 ##30	SURF6 (ENSPSNG00000006826) #8	MED22 (ENSPSNG00000006857) #7	ENSPSNG00000006905	SURF1 (ENSPSNG00000007027)	SURF2 (ENSPSNG00000007081)
Dolphin	MODERN SPECIES	3327		ENSTTRG00000007589	LCN6 (ENSTTRG00000007588) ##30	ENSTTRG00000007587	AGPAT2 (ENSTTRG00000007586) #11	EGFL7 (ENSTTRG00000007585) #12	NOTCH1 (ENSTTRG00000007583) #13	SEC16A (ENSTTRG00000007581) #14	INPP5E (ENSTTRG00000007580) #15	PMPCA (ENSTTRG00000007579) #16	ENTR1 (ENSTTRG00000007578) #17	ENSTTRG00000007574 #18	CARD9 (ENSTTRG00000007573) #19	ENSTTRG00000007572	GPSM1 (ENSTTRG00000007571) #21	QSOX2 (ENSTTRG00000007570) #22	LHX3 (ENSTTRG00000007569) #23
Sperm whale	MODERN SPECIES	4	LCN8 (ENSPCTG00005008995) ##30	ENSPCTG00005009085	DIPK1B (ENSPCTG00005009146) #10	AGPAT2 (ENSPCTG00005009252) #11	EGFL7 (ENSPCTG00005009325) #12	NOTCH1 (ENSPCTG00005009415) #13	SEC16A (ENSPCTG00005009503) #14	INPP5E (ENSPCTG00005009723) #15	PMPCA (ENSPCTG00005009778) #16	ENTR1 (ENSPCTG00005009894) #17	SNAPC4 (ENSPCTG00005010069) #18	CARD9 (ENSPCTG00005010146) #19	DNLZ (ENSPCTG00005010215) #20	GPSM1 (ENSPCTG00005010276) #21	ENSPCTG00005010541	QSOX2 (ENSPCTG00005010784) #22	LHX3 (ENSPCTG00005010847) #23	ENSPCTG00005010974	TMEM250 (ENSPCTG00005010996) #24	NACC2 (ENSPCTG00005011010) #25	UBAC1 (ENSPCTG00005011069) #26	CAMSAP1 (ENSPCTG00005011137) #27	KCNT1 (ENSPCTG00005011788) #28	SOHLH1 (ENSPCTG00005016868) #29	ENSPCTG00005016986 #32	ENSPCTG00005017121 #9	ENSPCTG00005017190	REXO4 (ENSPCTG00005017319)	MYMK (ENSPCTG00005017370)	ADAMTSL2 (ENSPCTG00005017407)	FAM163B (ENSPCTG00005017596)
Blue whale	MODERN SPECIES	17	LCN6 (ENSBMSG00010006505) ##30	LCN10 (ENSBMSG00010006474) ##30	DIPK1B (ENSBMSG00010006420) #10	AGPAT2 (ENSBMSG00010006383) #11	EGFL7 (ENSBMSG00010006311) #12	NOTCH1 (ENSBMSG00010006271) #13	SEC16A (ENSBMSG00010006223) #14	INPP5E (ENSBMSG00010006192) #15	PMPCA (ENSBMSG00010006169) #16	ENTR1 (ENSBMSG00010006084) #17	SNAPC4 (ENSBMSG00010005976) #18	CARD9 (ENSBMSG00010005914) #19	DNLZ (ENSBMSG00010005887) #20	GPSM1 (ENSBMSG00010005849) #21	ENSBMSG00010005810	QSOX2 (ENSBMSG00010005791) #22	LHX3 (ENSBMSG00010005757) #23	NACC2 (ENSBMSG00010005731) #25	UBAC1 (ENSBMSG00010005712) #26	CAMSAP1 (ENSBMSG00010005670) #27	KCNT1 (ENSBMSG00010005085) #28	ENSBMSG00010004933 #29	ENSBMSG00010004929 ##30	ENSBMSG00010004919 #30	GLT6D1 (ENSBMSG00010004903) #31	ENSBMSG00010004895 #32	ENSBMSG00010004853 ##30	ENSBMSG00010004815 #9	SURF6 (ENSBMSG00010004805) #8	MED22 (ENSBMSG00010004800) #7	RPL7A (ENSBMSG00010004777)
Camelidae	ANCESTRAL SPECIES	65	ENSGT00940000170286	ENSGT00950000182858.A.a.a #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220.c #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00940000170432	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00850000133605
Arabian camel	MODERN SPECIES	30	ENSCDRG00005000937	ENSCDRG00005000956 #9	DIPK1B (ENSCDRG00005001006) #10	AGPAT2 (ENSCDRG00005001034) #11	ENSCDRG00005001079 #12	NOTCH1 (ENSCDRG00005001130) #13	SEC16A (ENSCDRG00005001240) #14	INPP5E (ENSCDRG00005001361) #15	PMPCA (ENSCDRG00005001401) #16	ENTR1 (ENSCDRG00005001472) #17	SNAPC4 (ENSCDRG00005001573) #18	CARD9 (ENSCDRG00005001608) #19	ENSCDRG00005001626 #20	GPSM1 (ENSCDRG00005001642) #21	ENSCDRG00005001715	QSOX2 (ENSCDRG00005001830) #22	LHX3 (ENSCDRG00005001876) #23	TMEM250 (ENSCDRG00005001892) #24	NACC2 (ENSCDRG00005001900) #25	UBAC1 (ENSCDRG00005001921) #26	CAMSAP1 (ENSCDRG00005001959) #27	KCNT1 (ENSCDRG00005002073) #28	ENSCDRG00005002998	ENSCDRG00005003014 ##30	LCN9 (ENSCDRG00005003024) #30	ENSCDRG00005003034	GBGT1 (ENSCDRG00005003053) #34	RALGDS (ENSCDRG00005003140) #35	CEL (ENSCDRG00005003564) #36	GTF3C5 (ENSCDRG00005003789) #37	GFI1B (ENSCDRG00005003865)
Alpaca	MODERN SPECIES	1647																ENSVPAG00000009296 #22
Suina	ANCESTRAL SPECIES	47	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00390000017382	ENSGT00940000154745.a	ENSGT00390000014118
Chacoan peccary	MODERN SPECIES	132														ENSCWAG00000018727 #21	ENSCWAG00000018750	QSOX2 (ENSCWAG00000018846) #22	LHX3 (ENSCWAG00000018904) #23	TMEM250 (ENSCWAG00000018956) #24
Pig	MODERN SPECIES	286	LCN10 (ENSSSCG00000005836) ##30	DIPK1B (ENSSSCG00000005837) #10	ENSSSCG00000040845 #11	AGPAT2 (ENSSSCG00000053941) #11	EGFL7 (ENSSSCG00000005828) #12	NOTCH1 (ENSSSCG00000038509) #13	SEC16A (ENSSSCG00000034854) #14	INPP5E (ENSSSCG00000040869) #15	PMPCA (ENSSSCG00000031413) #16	ENTR1 (ENSSSCG00000035221) #17	SNAPC4 (ENSSSCG00000038262) #18	CARD9 (ENSSSCG00000031715) #19	DNLZ (ENSSSCG00000034732) #20	GPSM1 (ENSSSCG00000039487) #21	ENSSSCG00000034036	QSOX2 (ENSSSCG00000040163) #22	LHX3 (ENSSSCG00000034657) #23	TMEM250 (ENSSSCG00000054336) #24	NACC2 (ENSSSCG00000040967) #25	UBAC1 (ENSSSCG00000033162) #26	CAMSAP1 (ENSSSCG00000005753) #27	KCNT1 (ENSSSCG00000005762) #28	ENSSSCG00000005756	ENSSSCG00000039855 #30	GLT6D1 (ENSSSCG00000054117) #31	ENSSSCG00000044239	PAEP (ENSSSCG00000040042) ##30	MRPS2 (ENSSSCG00000005759)	PIERCE1 (ENSSSCG00000036914)	PPP1R26 (ENSSSCG00000005761)
Laurasiatheria_b	ANCESTRAL SPECIES	11	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.a.b ##30
Laurasiatheria_c	ANCESTRAL SPECIES	11	ENSGT00940000154745.a	ENSGT00390000017382	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00940000170466.b	ENSGT01050000244868.a.a.a.a.b ##30
Chiroptera	ANCESTRAL SPECIES	8	ENSGT00940000154745.a	ENSGT00390000017382	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.a.b ##30	ENSGT01050000244868.a.a.b.a.b ##30	ENSGT00940000153116.D
Microchiroptera	ANCESTRAL SPECIES	7	ENSGT00940000154745.a	ENSGT00390000017382	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.a.b ##30	ENSGT01050000244868.a.a.b.a.b ##30	ENSGT00940000153116.D
Microbat	MODERN SPECIES	2114															ENSMLUG00000029991	QSOX2 (ENSMLUG00000003020) #22
Greater horseshoe bat	MODERN SPECIES	3	ENSRFEG00010017815	MRPS2 (ENSRFEG00010017857)	DIPK1B (ENSRFEG00010017916) #10	AGPAT2 (ENSRFEG00010017940) #11	EGFL7 (ENSRFEG00010017996) #12	NOTCH1 (ENSRFEG00010018099) #13	SEC16A (ENSRFEG00010018245) #14	INPP5E (ENSRFEG00010019803) #15	PMPCA (ENSRFEG00010019835) #16	ENSRFEG00010019890 #17	SNAPC4 (ENSRFEG00010019951) #18	CARD9 (ENSRFEG00010020007) #19	DNLZ (ENSRFEG00010020087) #20	GPSM1 (ENSRFEG00010020133) #21	ENSRFEG00010020285	ENSRFEG00010020365 #22	LHX3 (ENSRFEG00010020399) #23	TMEM250 (ENSRFEG00010020471) #24	NACC2 (ENSRFEG00010020485) #25	UBAC1 (ENSRFEG00010020506) #26	CAMSAP1 (ENSRFEG00010020547) #27	KCNT1 (ENSRFEG00010020989) #28	SOHLH1 (ENSRFEG00010021751) #29	GLT6D1 (ENSRFEG00010021762) #31	ENSRFEG00010021768	ENSRFEG00010021776 #32	ENSRFEG00010021780 #32	LCN10 (ENSRFEG00010005147) ##30	LCN6 (ENSRFEG00010005174) ##30	LCN8 (ENSRFEG00010005184) ##30	LCN15 (ENSRFEG00010005197) ##30
Megabat	MODERN SPECIES	7163																QSOX2 (ENSPVAG00000002968) #22	LHX3 (ENSPVAG00000002969) #23
Equus	ANCESTRAL SPECIES	30	ENSGT00940000154745.a	ENSGT00390000017382	ENSGT01050000244868.a.a.b.b.b.a.c ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b.f.a #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00940000170466.b	ENSGT01050000244868.a.a.a.a.b ##30
Horse	MODERN SPECIES	17	MRPS2 (ENSECAG00000048606)	LCN1 (ENSECAG00000032975) ##30	ENSECAG00000029369 ##30	DIPK1B (ENSECAG00000005285) #10	AGPAT2 (ENSECAG00000010932) #11	EGFL7 (ENSECAG00000015593) #12	NOTCH1 (ENSECAG00000022405) #13	SEC16A (ENSECAG00000006377) #14	INPP5E (ENSECAG00000019901) #15	PMPCA (ENSECAG00000022206) #16	ENTR1 (ENSECAG00000010463) #17	SNAPC4 (ENSECAG00000015762) #18	CARD9 (ENSECAG00000019300) #19	GPSM1 (ENSECAG00000011306) #21	CCDC187 (ENSECAG00000019156)	QSOX2 (ENSECAG00000020761) #22	LHX3 (ENSECAG00000021983) #23	TMEM250 (ENSECAG00000032576) #24	NACC2 (ENSECAG00000006963) #25	UBAC1 (ENSECAG00000011717) #26	CAMSAP1 (ENSECAG00000017095) #27	KCNT1 (ENSECAG00000003311) #28	SOHLH1 (ENSECAG00000024372) #29	ENSECAG00000000866 ##30	LCN9 (ENSECAG00000005458) #30	GLT6D1 (ENSECAG00000008592) #31	ENSECAG00000041432	ENSECAG00000009820 #32	LGB2 (ENSECAG00000012852) ##30	ENSECAG00000013784 ##30	LCN6 (ENSECAG00000014991) ##30
Donkey	MODERN SPECIES	1	MRPS2 (ENSEASG00005010711)	ENSEASG00005027005 ##30	ENSEASG00005031389 ##30	DIPK1B (ENSEASG00005038302) #10	AGPAT2 (ENSEASG00005032738) #11	EGFL7 (ENSEASG00005018458) #12	NOTCH1 (ENSEASG00005018445) #13	SEC16A (ENSEASG00005018427) #14	INPP5E (ENSEASG00005018418) #15	PMPCA (ENSEASG00005018411) #16	ENTR1 (ENSEASG00005018403) #17	SNAPC4 (ENSEASG00005018397) #18	CARD9 (ENSEASG00005018392) #19	GPSM1 (ENSEASG00005018385) #21	CCDC187 (ENSEASG00005018375)	QSOX2 (ENSEASG00005018337) #22	LHX3 (ENSEASG00005018318) #23	TMEM250 (ENSEASG00005038060) #24	NACC2 (ENSEASG00005018311) #25	UBAC1 (ENSEASG00005018309) #26	CAMSAP1 (ENSEASG00005018242) #27	KCNT1 (ENSEASG00005017622) #28	ENSEASG00005033672 #29	ENSEASG00005017558 ##30	LCN9 (ENSEASG00005017557) #30	ENSEASG00005032882 #31	ENSEASG00005017554	ENSEASG00005033738 #32	ENSEASG00005027918	ENSEASG00005035684 ##30	ENSEASG00005017550 ##30
Carnivora	ANCESTRAL SPECIES	18	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.a.b ##30
Caniformia	ANCESTRAL SPECIES	16	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.a ##30
Caniformia_b	ANCESTRAL SPECIES	12	ENSGT00940000153116.C.a	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.a.b ##30
Ursidae	ANCESTRAL SPECIES	6	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT00950000182858.A.a.a.m #9
Ursus	ANCESTRAL SPECIES	118	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.a.a ##30	ENSGT01050000244868.a.a.a.a.b ##30
American black bear	MODERN SPECIES	2512										ENTR1 (ENSUAMG00000009482) #17	SNAPC4 (ENSUAMG00000009486) #18	CARD9 (ENSUAMG00000009610) #19	DNLZ (ENSUAMG00000009614) #20	GPSM1 (ENSUAMG00000009618) #21	ENSUAMG00000009621	QSOX2 (ENSUAMG00000009630) #22
Polar bear	MODERN SPECIES	258	ENSUMAG00000023190	ENSUMAG00000023184	LCN8 (ENSUMAG00000023179) ##30	ENSUMAG00000023176 ##30	ENSUMAG00000023175	AGPAT2 (ENSUMAG00000023162) #11	ENSUMAG00000023151 #12	SEC16A (ENSUMAG00000023084) #14	INPP5E (ENSUMAG00000023017) #15	PMPCA (ENSUMAG00000023003) #16	ENTR1 (ENSUMAG00000023001) #17	SNAPC4 (ENSUMAG00000022985) #18	CARD9 (ENSUMAG00000022975) #19	ENSUMAG00000022972 #20	ENSUMAG00000022966 #21	QSOX2 (ENSUMAG00000022932) #22	ENSUMAG00000022916 #23	UBAC1 (ENSUMAG00000022906) #26	CAMSAP1 (ENSUMAG00000022878) #27	ENSUMAG00000022856	LCN9 (ENSUMAG00000022854) #30	GLT6D1 (ENSUMAG00000022849) #31	ENSUMAG00000022845 ##30	ENSUMAG00000022842 ##30	ENSUMAG00000022837 ##30
Giant Panda	MODERN SPECIES	17	CCDC183 (ENSAMEG00000013189)	ENSAMEG00000027528	DIPK1B (ENSAMEG00000023983) #10	AGPAT2 (ENSAMEG00000003965) #11	EGFL7 (ENSAMEG00000003952) #12	NOTCH1 (ENSAMEG00000003827) #13	SEC16A (ENSAMEG00000003760) #14	INPP5E (ENSAMEG00000003733) #15	PMPCA (ENSAMEG00000003694) #16	ENTR1 (ENSAMEG00000003675) #17	SNAPC4 (ENSAMEG00000003669) #18	CARD9 (ENSAMEG00000003641) #19	DNLZ (ENSAMEG00000003639) #20	GPSM1 (ENSAMEG00000003593) #21	ENSAMEG00000029669	ENSAMEG00000003573 #22	LHX3 (ENSAMEG00000003556) #23	TMEM250 (ENSAMEG00000003554) #24	NACC2 (ENSAMEG00000003538) #25	ENSAMEG00000003506 #26	CAMSAP1 (ENSAMEG00000003475) #27	KCNT1 (ENSAMEG00000003376) #28	ENSAMEG00000023792 #29	ENSAMEG00000025121 ##30	ENSAMEG00000003353 #30	ENSAMEG00000028650	ENSAMEG00000003298 ##30	ENSAMEG00000011733 #8	MED22 (ENSAMEG00000011726) #7	ENSAMEG00000011708	ENSAMEG00000026560
Mustelinae	ANCESTRAL SPECIES	12	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.a.b ##30	ENSGT00390000017382	ENSGT00940000154745.a	ENSGT00390000014118	ENSGT00940000156959.B
American mink	MODERN SPECIES	395			DIPK1B (ENSNVIG00000010736) #10	AGPAT2 (ENSNVIG00000010745) #11	EGFL7 (ENSNVIG00000010752) #12	NOTCH1 (ENSNVIG00000010812) #13	SEC16A (ENSNVIG00000010899) #14	INPP5E (ENSNVIG00000012928) #15	PMPCA (ENSNVIG00000013020) #16	ENTR1 (ENSNVIG00000013185) #17	SNAPC4 (ENSNVIG00000013351) #18	CARD9 (ENSNVIG00000014001) #19	DNLZ (ENSNVIG00000014097) #20	GPSM1 (ENSNVIG00000014115) #21	ENSNVIG00000014282	QSOX2 (ENSNVIG00000014518) #22	LHX3 (ENSNVIG00000014671) #23	TMEM250 (ENSNVIG00000014917) #24	NACC2 (ENSNVIG00000014952) #25	UBAC1 (ENSNVIG00000015186) #26	CAMSAP1 (ENSNVIG00000015998) #27	KCNT1 (ENSNVIG00000016797) #28	ENSNVIG00000017342 #29	ENSNVIG00000017352	ENSNVIG00000017431 #32	LCN1 (ENSNVIG00000017458) ##30	MRPS2 (ENSNVIG00000017571)	PIERCE1 (ENSNVIG00000017623)	PPP1R26 (ENSNVIG00000017679)	OLFM1 (ENSNVIG00000017715)	FCN1 (ENSNVIG00000017802)
Ferret	MODERN SPECIES	218	EGFL7 (ENSMPUG00000011294) #12	ENSMPUG00000011321	NOTCH1 (ENSMPUG00000011325) #13	SEC16A (ENSMPUG00000011340) #14	INPP5E (ENSMPUG00000011487) #15	PMPCA (ENSMPUG00000011493) #16	ENTR1 (ENSMPUG00000011499) #17	SNAPC4 (ENSMPUG00000011503) #18	CARD9 (ENSMPUG00000011535) #19	ENSMPUG00000011563	ENSMPUG00000019205	GPSM1 (ENSMPUG00000011570) #21	ENSMPUG00000019209	ENSMPUG00000011579	ENSMPUG00000011582	QSOX2 (ENSMPUG00000011601) #22	LHX3 (ENSMPUG00000011666) #23	NACC2 (ENSMPUG00000011704) #25	UBAC1 (ENSMPUG00000011712) #26	CAMSAP1 (ENSMPUG00000011722) #27	KCNT1 (ENSMPUG00000011799) #28	ENSMPUG00000011974	ENSMPUG00000011979 #29	ENSMPUG00000011986	ENSMPUG00000011995	ENSMPUG00000012000	ENSMPUG00000012004	ENSMPUG00000012006	LCN1 (ENSMPUG00000012011) ##30	MRPS2 (ENSMPUG00000012038)	PIERCE1 (ENSMPUG00000012047)
Canidae	ANCESTRAL SPECIES	2	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.a.b ##30	ENSGT00950000182858.A.a.a.m #9
Canis_lupus	ANCESTRAL SPECIES	3	ENSGT01050000244868.a.a.b.b.b.b ##30	ENSGT01050000244868.a.a.b.b.b.a ##30	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570 #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.a ##30	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.a.b ##30	ENSGT00950000182858.A.a.a.m #9
Dingo	MODERN SPECIES	327	LCN6 (ENSCAFG00020002660) ##30	LCN10 (ENSCAFG00020002649) ##30	ENSCAFG00020002631 #10	AGPAT2 (ENSCAFG00020002617) #11	EGFL7 (ENSCAFG00020002575) #12	NOTCH1 (ENSCAFG00020002327) #13	SEC16A (ENSCAFG00020002294) #14	INPP5E (ENSCAFG00020002279) #15	PMPCA (ENSCAFG00020002265) #16	ENTR1 (ENSCAFG00020002262) #17	SNAPC4 (ENSCAFG00020002256) #18	CARD9 (ENSCAFG00020002246) #19	DNLZ (ENSCAFG00020002235) #20	GPSM1 (ENSCAFG00020002226) #21	ENSCAFG00020002190	QSOX2 (ENSCAFG00020002044) #22	LHX3 (ENSCAFG00020001973) #23	TMEM250 (ENSCAFG00020001965) #24	NACC2 (ENSCAFG00020001961) #25	UBAC1 (ENSCAFG00020001955) #26	CAMSAP1 (ENSCAFG00020001481) #27	ENSCAFG00020001347	ENSCAFG00020001334 ##30	ENSCAFG00020001311 #30	GLT6D1 (ENSCAFG00020001299) #31	ENSCAFG00020001275 #32	ENSCAFG00020001239 ##30	ENSCAFG00020001212 #32	LCN1 (ENSCAFG00020001200) ##30	ABO (ENSCAFG00020001189) #9	SURF6 (ENSCAFG00020001156) #8
Dog	MODERN SPECIES	37	LCN6 (ENSCAFG00845005355) ##30	ENSCAFG00845005360 ##30	DIPK1B (ENSCAFG00845005381) #10	AGPAT2 (ENSCAFG00845005389) #11	ENSCAFG00845005400 #12	NOTCH1 (ENSCAFG00845005453) #13	SEC16A (ENSCAFG00845005678) #14	INPP5E (ENSCAFG00845005885) #15	PMPCA (ENSCAFG00845005923) #16	ENTR1 (ENSCAFG00845005993) #17	SNAPC4 (ENSCAFG00845006095) #18	CARD9 (ENSCAFG00845006183) #19	DNLZ (ENSCAFG00845006222) #20	GPSM1 (ENSCAFG00845006295) #21	ENSCAFG00845006466	QSOX2 (ENSCAFG00845006815) #22	LHX3 (ENSCAFG00845007030) #23	TMEM250 (ENSCAFG00845007107) #24	NACC2 (ENSCAFG00845007192) #25	UBAC1 (ENSCAFG00845007292) #26	CAMSAP1 (ENSCAFG00845007447) #27	KCNT1 (ENSCAFG00845007891) #28	ENSCAFG00845008842 #29	ENSCAFG00845008904	CANF2 (ENSCAFG00845008996) ##30	ENSCAFG00845009057 #30	GLT6D1 (ENSCAFG00845009120) #31	ENSCAFG00845009255	ENSCAFG00845009349 #32	ENSCAFG00845009473	OBP2B (ENSCAFG00845009522) ##30
Red fox	MODERN SPECIES	166	LCN6 (ENSVVUG00000026069) ##30	LCN10 (ENSVVUG00000026072) ##30	FAM69B (ENSVVUG00000026085) #10	AGPAT2 (ENSVVUG00000026090) #11	EGFL7 (ENSVVUG00000026092) #12	NOTCH1 (ENSVVUG00000026126) #13	SEC16A (ENSVVUG00000026728) #14	INPP5E (ENSVVUG00000026975) #15	PMPCA (ENSVVUG00000027003) #16	ENTR1 (ENSVVUG00000027138) #17	SNAPC4 (ENSVVUG00000027148) #18	CARD9 (ENSVVUG00000027169) #19	DNLZ (ENSVVUG00000027171) #20	GPSM1 (ENSVVUG00000027177) #21	ENSVVUG00000027184	QSOX2 (ENSVVUG00000027191) #22	LHX3 (ENSVVUG00000027200) #23	TMEM250 (ENSVVUG00000027207) #24	NACC2 (ENSVVUG00000027208) #25	UBAC1 (ENSVVUG00000027213) #26	CAMSAP1 (ENSVVUG00000027215) #27	KCNT1 (ENSVVUG00000027220) #28	SOHLH1 (ENSVVUG00000027237) #29	ENSVVUG00000027244 ##30	ENSVVUG00000027250 #30	ENSVVUG00000027256 #31	ENSVVUG00000027261 #32	ENSVVUG00000027266 ##30	ENSVVUG00000027268	LCN1 (ENSVVUG00000027273) ##30	ABO (ENSVVUG00000027281) #9
Felidae	ANCESTRAL SPECIES	16	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a.m #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570.b #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00390000000656 #29	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.b ##30	ENSGT00940000166419
Panthera	ANCESTRAL SPECIES	11	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a.m #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570.b #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.a.b ##30	ENSGT00940000166419	ENSGT00950000183536
Tiger	MODERN SPECIES	505									AGPAT2 (ENSPTIG00000006753) #11	EGFL7 (ENSPTIG00000007480) #12	PMPCA (ENSPTIG00000012552) #16	ENTR1 (ENSPTIG00000013527) #17	ENSPTIG00000014707 #18	DNLZ (ENSPTIG00000015674) #20	ENSPTIG00000015997	ENSPTIG00000017703 #22	CAMSAP1 (ENSPTIG00000018549) #27
Panthera_a	ANCESTRAL SPECIES	10	ENSGT00390000006980 #8	ENSGT00950000182858.A.a.a.m #9	ENSGT00390000006452.b.a #10	ENSGT00390000008726.h.a #11	ENSGT00940000160015 #12	ENSGT00940000157157.b #13	ENSGT00940000159324 #14	ENSGT00940000158199 #15	ENSGT00940000156724 #16	ENSGT00390000000560 #17	ENSGT00940000160404 #18	ENSGT00940000160570.b #19	ENSGT00390000008220 #20	ENSGT00940000154667.a #21	ENSGT00530000065015	ENSGT00940000159734 #22	ENSGT00940000160316 #23	ENSGT00560000078707 #24	ENSGT00940000159244 #25	ENSGT00390000014658 #26	ENSGT00950000182975.a.a.b #27	ENSGT00940000156880 #28	ENSGT00940000173695	ENSGT01050000244868.a.a.a.b.a.a.b #30	ENSGT00950000182858.B.a.c #31	ENSGT00850000133605	ENSGT01050000244868.a.a.a.b.b.c.e #32	ENSGT01050000244868.a.a.a.b.b.d ##30	ENSGT01050000244868.a.a.a.b.b.c.f #32	ENSGT01050000244868.a.a.a.a.b ##30	ENSGT00940000166419
leopard	MODERN SPECIES	185					DIPK1B (ENSPPRG00000004451) #10	AGPAT2 (ENSPPRG00000004485) #11	EGFL7 (ENSPPRG00000004632) #12	INPP5E (ENSPPRG00000005437) #15	PMPCA (ENSPPRG00000005483) #16	ENTR1 (ENSPPRG00000005604) #17	ENSPPRG00000005645 #19	CARD9 (ENSPPRG00000005670) #19	DNLZ (ENSPPRG00000005697) #20	GPSM1 (ENSPPRG00000005713) #21	ENSPPRG00000005734	QSOX2 (ENSPPRG00000005746) #22	LHX3 (ENSPPRG00000005775) #23	TMEM250 (ENSPPRG00000012098) #24	NACC2 (ENSPPRG00000005784) #25	UBAC1 (ENSPPRG00000005794) #26	CAMSAP1 (ENSPPRG00000005813) #27	LCN9 (ENSPPRG00000006155) #30	GLT6D1 (ENSPPRG00000006167) #31	ENSPPRG00000006174 ##30	ENSPPRG00000006185 #32	ENSPPRG00000006259 ##30	ENSPPRG00000006273 #32	LCN1 (ENSPPRG00000006312) ##30	ENSPPRG00000006336	ENSPPRG00000006350	ENSPPRG00000006403
lion	MODERN SPECIES	13	SURF6 (ENSPLOG00000019851) #8	ABO (ENSPLOG00000019802) #9	DIPK1B (ENSPLOG00000019737) #10	AGPAT2 (ENSPLOG00000019691) #11	ENSPLOG00000019622 #12	NOTCH1 (ENSPLOG00000019561) #13	SEC16A (ENSPLOG00000019490) #14	INPP5E (ENSPLOG00000019443) #15	PMPCA (ENSPLOG00000019328) #16	ENTR1 (ENSPLOG00000019090) #17	SNAPC4 (ENSPLOG00000019034) #18	CARD9 (ENSPLOG00000018978) #19	DNLZ (ENSPLOG00000018907) #20	GPSM1 (ENSPLOG00000018756) #21	ENSPLOG00000018664	QSOX2 (ENSPLOG00000018555) #22	LHX3 (ENSPLOG00000018414) #23	TMEM250 (ENSPLOG00000018388) #24	NACC2 (ENSPLOG00000018337) #25	UBAC1 (ENSPLOG00000018294) #26	CAMSAP1 (ENSPLOG00000018226) #27	KCNT1 (ENSPLOG00000015220) #28	ENSPLOG00000014608	ENSPLOG00000014511 #30	GLT6D1 (ENSPLOG00000014436) #31	ENSPLOG00000014360	ENSPLOG00000014288 #32	ENSPLOG00000014227 ##30	LCN1 (ENSPLOG00000014172) ##30
Cat	MODERN SPECIES	244	SURF6 (ENSFCAG00000040914) #8	ENSFCAG00000025873 #9	ENSFCAG00000051617	DIPK1B (ENSFCAG00000046165) #10	AGPAT2 (ENSFCAG00000011607) #11	EGFL7 (ENSFCAG00000011605) #12	NOTCH1 (ENSFCAG00000023517) #13	SEC16A (ENSFCAG00000024359) #14	INPP5E (ENSFCAG00000007225) #15	PMPCA (ENSFCAG00000007223) #16	ENTR1 (ENSFCAG00000007222) #17	SNAPC4 (ENSFCAG00000028095) #18	CARD9 (ENSFCAG00000042261) #19	GPSM1 (ENSFCAG00000007220) #21	ENSFCAG00000045910	QSOX2 (ENSFCAG00000012324) #22	LHX3 (ENSFCAG00000042025) #23	TMEM250 (ENSFCAG00000029518) #24	NACC2 (ENSFCAG00000009352) #25	UBAC1 (ENSFCAG00000010881) #26	CAMSAP1 (ENSFCAG00000001822) #27	KCNT1 (ENSFCAG00000018193) #28	SOHLH1 (ENSFCAG00000043136) #29	ENSFCAG00000042288	LCN9 (ENSFCAG00000013484) #30	GLT6D1 (ENSFCAG00000038554) #31	ENSFCAG00000040527	ENSFCAG00000005742 #32	ENSFCAG00000023194 ##30	ENSFCAG00000005739 ##30	ENSFCAG00000035151
Eulipotyphla	ANCESTRAL SPECIES	1436																ENSGT00940000159734 #22	ENSGT00940000160316 #23
Hedgehog	MODERN SPECIES	1040																QSOX2 (ENSEEUG00000014655) #22	LHX3 (ENSEEUG00000014517) #23