Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000158512	ENSGT00940000162439	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194 #7	ENSGT00390000017523 #8	ENSGT01030000234555.a.a.a.c.a #9	ENSGT00940000153592.B.a #11	ENSGT00390000015077 #12	ENSGT00940000157588 #13	ENSGT00950000182803.A.a.a #18	ENSGT00940000157932 #19	ENSGT00940000159416 #20	ENSGT00940000156254 #21	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #27	ENSGT00940000163327 #28	ENSGT00940000157944 #29	ENSGT00940000162101 #30	ENSGT00390000002762.a.b #32	ENSGT00390000010052.a #33	ENSGT00940000156701 #34	ENSGT00390000013127.b #35	ENSGT00940000156643 #36	ENSGT00950000182906.a.a.a #37
Sciuridae	ANCESTRAL SPECIES	25	ENSGT00940000158512	ENSGT00940000157820.a.b	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194 #7	ENSGT00390000017523 #8	ENSGT01030000234555.a.a.a.c.a #9	ENSGT00940000153592.B.a #11	ENSGT00390000015077 #12	ENSGT00940000157588 #13	ENSGT00950000182803.A.a.a #18	ENSGT00940000157932 #19	ENSGT00940000159416 #20	ENSGT00940000156254 #21	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #27	ENSGT00940000163327 #28	ENSGT00940000157944 #29	ENSGT00940000162101 #30	ENSGT00390000002762.a.b #32	ENSGT00390000010052.a #33	ENSGT00940000156701 #34	ENSGT00390000013127.b #35	ENSGT00940000156643 #36	ENSGT00950000182906.a.a.a #37	ENSGT00390000009298
Eurasian red squirrel	MODERN SPECIES	12	TTC19 (ENSSVLG00005010380) #7	ZSWIM7 (ENSSVLG00005010348) #8	ADORA2B (ENSSVLG00005010320) #9	ENSSVLG00005010304 #10	SPECC1 (ENSSVLG00005010005) #11	AKAP10 (ENSSVLG00005009887) #12	ULK2 (ENSSVLG00005009815) #13	ENSSVLG00005009797 #14	ENSSVLG00005009785 #15	ENSSVLG00005009763 #16	ENSSVLG00005009732 #17	PRPSAP2 (ENSSVLG00005009590) #18	FAM83G (ENSSVLG00005009541) #19	SLC5A10 (ENSSVLG00005009284) #20	ENSSVLG00005009171 #21	EPN2 (ENSSVLG00005009007) #22	B9D1 (ENSSVLG00005008930) #23	MAPK7 (ENSSVLG00005008858) #24	MFAP4 (ENSSVLG00005008828) #25	RNF112 (ENSSVLG00005008752) #26	SLC47A1 (ENSSVLG00005008457) #27	ENSSVLG00005008364 #28	ALDH3A2 (ENSSVLG00005008316) #29	ALDH3A1 (ENSSVLG00005008137) #30	ENSSVLG00005008064 #31	SHMT1 (ENSSVLG00005007993) #32	SMCR8 (ENSSVLG00005007971) #33	TOP3A (ENSSVLG00005007946) #34	MIEF2 (ENSSVLG00005007902) #35	FLII (ENSSVLG00005007540) #36	LLGL1 (ENSSVLG00005007447) #37
Marmotini	ANCESTRAL SPECIES	114												ENSGT00950000182803.A.a.a #18	ENSGT00940000157932 #19	ENSGT00940000159416 #20	ENSGT00940000156254 #21	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000165902	ENSGT00940000161644 #27	ENSGT00940000163327 #28	ENSGT00940000157944 #29	ENSGT00940000162101 #30
Marmotini_b	ANCESTRAL SPECIES	221												ENSGT00950000182803.A.a.a #18	ENSGT00940000157932 #19	ENSGT00940000159416 #20	ENSGT00940000156254 #21	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000165902	ENSGT00940000161644 #27	ENSGT00940000163327 #28	ENSGT00940000157944 #29	ENSGT00940000162101 #30
Arctic ground squirrel	MODERN SPECIES	747															ENSUPAG00010000991	EPN2 (ENSUPAG00010000938) #22	B9D1 (ENSUPAG00010000923) #23	MAPK7 (ENSUPAG00010000890) #24	MFAP4 (ENSUPAG00010000871) #25	RNF112 (ENSUPAG00010000784) #26	ENSUPAG00010000778	SLC47A1 (ENSUPAG00010000737) #27	ENSUPAG00010000699 #28	ENSUPAG00010000691	ALDH3A2 (ENSUPAG00010000645) #29
Squirrel	MODERN SPECIES	480												PRPSAP2 (ENSSTOG00000001228) #18	FAM83G (ENSSTOG00000012760) #19	SLC5A10 (ENSSTOG00000012751) #20	ENSSTOG00000028177 #21	EPN2 (ENSSTOG00000022297) #22	B9D1 (ENSSTOG00000016538) #23	MAPK7 (ENSSTOG00000000446) #24	MFAP4 (ENSSTOG00000020719) #25	RNF112 (ENSSTOG00000000444) #26	SLC47A1 (ENSSTOG00000007878) #27	ENSSTOG00000024201	ENSSTOG00000023501 #28	ALDH3A2 (ENSSTOG00000007914) #29	ALDH3A1 (ENSSTOG00000008487) #30
Alpin marmot	MODERN SPECIES	87	SREBF1 (ENSMMMG00000008419)	PEMT (ENSMMMG00000008383)	RASD1 (ENSMMMG00000008374)	MED9 (ENSMMMG00000008364)	NT5M (ENSMMMG00000008354)	COPS3 (ENSMMMG00000008339)	FLCN (ENSMMMG00000008317)	PLD6 (ENSMMMG00000008310)	MPRIP (ENSMMMG00000008185)	TNFRSF13B (ENSMMMG00000008173)	USP22 (ENSMMMG00000007836)	PRPSAP2 (ENSMMMG00000007787) #18	FAM83G (ENSMMMG00000007777) #19	SLC5A10 (ENSMMMG00000007755) #20	ENSMMMG00000007739 #21	EPN2 (ENSMMMG00000007698) #22	B9D1 (ENSMMMG00000007673) #23	MAPK7 (ENSMMMG00000007658) #24	MFAP4 (ENSMMMG00000007614) #25	RNF112 (ENSMMMG00000007536) #26	ENSMMMG00000007527	SLC47A1 (ENSMMMG00000007509) #27	ENSMMMG00000007481 #28	ALDH3A2 (ENSMMMG00000007436) #29	ALDH3A1 (ENSMMMG00000007417) #30
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000158512	ENSGT00940000163680.x	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194 #7	ENSGT00390000017523 #8	ENSGT01030000234555.a.a.a.c.a #9	ENSGT00940000153592.B.a #11	ENSGT00390000015077 #12	ENSGT00940000157588 #13	ENSGT00950000182803.A.a.a #18	ENSGT00940000157932 #19	ENSGT00940000159416 #20	ENSGT00940000156254 #21	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #27	ENSGT00940000163327 #28	ENSGT00940000157944 #29	ENSGT00940000162101 #30
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000158512	ENSGT00940000162439	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194 #7	ENSGT00390000017523 #8	ENSGT01030000234555.a.a.a.c.a #9	ENSGT00940000153592.B.a #11	ENSGT00390000015077 #12	ENSGT00940000157588 #13	ENSGT00950000182803.A.a.a #18	ENSGT00940000157932 #19	ENSGT00940000159416 #20	ENSGT00940000156254 #21	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #27	ENSGT00940000163327 #28	ENSGT00940000157944 #29	ENSGT00940000162101 #30
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00940000161370	ENSGT00940000158512	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194 #7	ENSGT00390000017523 #8	ENSGT01030000234555.a.a.a.c.a #9	ENSGT00940000153592.B.a #11	ENSGT00390000015077 #12	ENSGT00940000157588 #13	ENSGT00950000182803.A.a.a #18	ENSGT00940000157932 #19	ENSGT00940000159416 #20	ENSGT00940000156254 #21	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #27	ENSGT00940000163327 #28	ENSGT00940000157944 #29	ENSGT00940000162101 #30
Long-tailed chinchilla	MODERN SPECIES	174	ZNF287 (ENSCLAG00000007484)	LRRC75A (ENSCLAG00000010115)	ENSCLAG00000009258	PIGL (ENSCLAG00000008117)	NCOR1 (ENSCLAG00000017349)	TTC19 (ENSCLAG00000006736) #7	ZSWIM7 (ENSCLAG00000006174) #8	ADORA2B (ENSCLAG00000006111) #9	SPECC1 (ENSCLAG00000013165) #11	AKAP10 (ENSCLAG00000009378) #12	ULK2 (ENSCLAG00000008483) #13	PRPSAP2 (ENSCLAG00000008926) #18	FAM83G (ENSCLAG00000008530) #19	SLC5A10 (ENSCLAG00000011277) #20	ENSCLAG00000010753 #21	EPN2 (ENSCLAG00000007382) #22	B9D1 (ENSCLAG00000013112) #23	MAPK7 (ENSCLAG00000011109) #24	MFAP4 (ENSCLAG00000009440) #25	RNF112 (ENSCLAG00000008759) #26	SLC47A1 (ENSCLAG00000010505) #27	ENSCLAG00000012276	ENSCLAG00000007388 #28	ALDH3A2 (ENSCLAG00000013890) #29	ALDH3A1 (ENSCLAG00000013640) #30
Degu	MODERN SPECIES	381											ENSODEG00000000337 #18	FAM83G (ENSODEG00000000249) #19	SLC5A10 (ENSODEG00000000154) #20	ENSODEG00000001194 #21	ENSODEG00000018664	EPN2 (ENSODEG00000000790) #22	ENSODEG00000000687 #23	ENSODEG00000018601	MAPK7 (ENSODEG00000000439) #24	MFAP4 (ENSODEG00000000409) #25	ENSODEG00000018628	RNF112 (ENSODEG00000000180) #26	ENSODEG00000018676	SLC47A1 (ENSODEG00000001124) #27	ENSODEG00000001050	ENSODEG00000000983 #28	ALDH3A2 (ENSODEG00000000770) #29	ALDH3A1 (ENSODEG00000000680) #30
Guinea pig	MODERN SPECIES	71											ENSCPOG00000031268	PRPSAP2 (ENSCPOG00000010989) #18	SLC5A10 (ENSCPOG00000011115) #20	FAM83G (ENSCPOG00000023284) #19	ENSCPOG00000031331 #21	EPN2 (ENSCPOG00000004842) #22	B9D1 (ENSCPOG00000000603) #23	MAPK7 (ENSCPOG00000027276) #24	MFAP4 (ENSCPOG00000026738) #25	RNF112 (ENSCPOG00000013927) #26	SLC47A1 (ENSCPOG00000011224) #27	ENSCPOG00000039527 #28	ALDH3A2 (ENSCPOG00000013785) #29	ALDH3A1 (ENSCPOG00000015670) #30	ENSCPOG00000023227	ABCA6 (ENSCPOG00000036808)	ABCA9 (ENSCPOG00000011990)	FAM20A (ENSCPOG00000010447)	PRKAR1A (ENSCPOG00000004159)	WIPI1 (ENSCPOG00000014341)	ARSG (ENSCPOG00000014338)
Naked mole-rat female	MODERN SPECIES	12	MRPS23 (ENSHGLG00000012208)	ENSHGLG00000044611	ENSHGLG00000042495	ENSHGLG00000039867	ENSHGLG00000042780	ENSHGLG00000003819	TMEM11 (ENSHGLG00000005715)	NATD1 (ENSHGLG00000007125)	MAP2K3 (ENSHGLG00000040410)	ENSHGLG00000033829	ENSHGLG00000003535 #18	ENSHGLG00000004321 #20	FAM83G (ENSHGLG00000007826) #19	ENSHGLG00000038108 #20	ENSHGLG00000003298 #21	EPN2 (ENSHGLG00000032563) #22	B9D1 (ENSHGLG00000041884) #23	MAPK7 (ENSHGLG00000013226) #24	MFAP4 (ENSHGLG00000018435) #25	RNF112 (ENSHGLG00000014434) #26	SLC47A1 (ENSHGLG00000008765) #27	ENSHGLG00000011530 #28	ENSHGLG00000039140	ALDH3A2 (ENSHGLG00000004669) #29	ENSHGLG00000005779 #30	ENSHGLG00000021085	ENSHGLG00000047955	ENSHGLG00000015738 #12	ENSHGLG00000015142 #13	ENSHGLG00000044793	ENSHGLG00000011782