Rodentia_A	ANCESTRAL SPECIES	3	ENSGT00940000158512	ENSGT00940000162439	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000015077	ENSGT00940000157588	ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #28	ENSGT00940000163327 #29	ENSGT00940000157944 #31	ENSGT00940000162101	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00390000013127.b	ENSGT00940000156643	ENSGT00950000182906.a.a.a
Sciuridae	ANCESTRAL SPECIES	25	ENSGT00940000158512	ENSGT00940000157820.a.b	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000015077	ENSGT00940000157588	ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #28	ENSGT00940000163327 #29	ENSGT00940000157944 #31	ENSGT00940000162101	ENSGT00390000002762.a.b	ENSGT00390000010052.a	ENSGT00940000156701	ENSGT00390000013127.b	ENSGT00940000156643	ENSGT00950000182906.a.a.a	ENSGT00390000009298
Marmotini	ANCESTRAL SPECIES	114												ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000165902 #27	ENSGT00940000161644 #28	ENSGT00940000163327 #29	ENSGT00940000157944 #31	ENSGT00940000162101
Marmotini_b	ANCESTRAL SPECIES	221												ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000165902 #27	ENSGT00940000161644 #28	ENSGT00940000163327 #29	ENSGT00940000157944 #31	ENSGT00940000162101
Arctic ground squirrel	MODERN SPECIES	747															ENSUPAG00010000991 #21	EPN2 (ENSUPAG00010000938) #22	B9D1 (ENSUPAG00010000923) #23	MAPK7 (ENSUPAG00010000890) #24	MFAP4 (ENSUPAG00010000871) #25	RNF112 (ENSUPAG00010000784) #26	ENSUPAG00010000778 #27	SLC47A1 (ENSUPAG00010000737) #28	ENSUPAG00010000699 #29	ENSUPAG00010000691 #30	ALDH3A2 (ENSUPAG00010000645) #31
Squirrel	MODERN SPECIES	480												PRPSAP2 (ENSSTOG00000001228)	FAM83G (ENSSTOG00000012760)	SLC5A10 (ENSSTOG00000012751)	ENSSTOG00000028177	EPN2 (ENSSTOG00000022297) #22	B9D1 (ENSSTOG00000016538) #23	MAPK7 (ENSSTOG00000000446) #24	MFAP4 (ENSSTOG00000020719) #25	RNF112 (ENSSTOG00000000444) #26	SLC47A1 (ENSSTOG00000007878) #28	ENSSTOG00000024201	ENSSTOG00000023501 #29	ALDH3A2 (ENSSTOG00000007914) #31	ALDH3A1 (ENSSTOG00000008487)
Alpin marmot	MODERN SPECIES	87	SREBF1 (ENSMMMG00000008419)	PEMT (ENSMMMG00000008383)	RASD1 (ENSMMMG00000008374)	MED9 (ENSMMMG00000008364)	NT5M (ENSMMMG00000008354)	COPS3 (ENSMMMG00000008339)	FLCN (ENSMMMG00000008317)	PLD6 (ENSMMMG00000008310)	MPRIP (ENSMMMG00000008185)	TNFRSF13B (ENSMMMG00000008173)	USP22 (ENSMMMG00000007836)	PRPSAP2 (ENSMMMG00000007787)	FAM83G (ENSMMMG00000007777)	SLC5A10 (ENSMMMG00000007755)	ENSMMMG00000007739	EPN2 (ENSMMMG00000007698) #22	B9D1 (ENSMMMG00000007673) #23	MAPK7 (ENSMMMG00000007658) #24	MFAP4 (ENSMMMG00000007614) #25	RNF112 (ENSMMMG00000007536) #26	ENSMMMG00000007527 #27	SLC47A1 (ENSMMMG00000007509) #28	ENSMMMG00000007481 #29	ALDH3A2 (ENSMMMG00000007436) #31	ALDH3A1 (ENSMMMG00000007417)
Eurasian red squirrel	MODERN SPECIES	12	TTC19 (ENSSVLG00005010380)	ZSWIM7 (ENSSVLG00005010348)	ADORA2B (ENSSVLG00005010320)	ENSSVLG00005010304	SPECC1 (ENSSVLG00005010005)	AKAP10 (ENSSVLG00005009887)	ULK2 (ENSSVLG00005009815)	ENSSVLG00005009797	ENSSVLG00005009785	ENSSVLG00005009763	ENSSVLG00005009732	PRPSAP2 (ENSSVLG00005009590)	FAM83G (ENSSVLG00005009541)	SLC5A10 (ENSSVLG00005009284)	ENSSVLG00005009171	EPN2 (ENSSVLG00005009007) #22	B9D1 (ENSSVLG00005008930) #23	MAPK7 (ENSSVLG00005008858) #24	MFAP4 (ENSSVLG00005008828) #25	RNF112 (ENSSVLG00005008752) #26	SLC47A1 (ENSSVLG00005008457) #28	ENSSVLG00005008364 #29	ALDH3A2 (ENSSVLG00005008316) #31	ALDH3A1 (ENSSVLG00005008137)	ENSSVLG00005008064	SHMT1 (ENSSVLG00005007993)	SMCR8 (ENSSVLG00005007971)	TOP3A (ENSSVLG00005007946)	MIEF2 (ENSSVLG00005007902)	FLII (ENSSVLG00005007540)	LLGL1 (ENSSVLG00005007447)
Hystricomorpha	ANCESTRAL SPECIES	3	ENSGT00940000158512	ENSGT00940000163680.x	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000015077	ENSGT00940000157588	ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #28	ENSGT00940000163327 #29	ENSGT00940000157944 #31	ENSGT00940000162101
Hystricomorpha_a	ANCESTRAL SPECIES		ENSGT00940000158512	ENSGT00940000162439	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000015077	ENSGT00940000157588	ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #28	ENSGT00940000163327 #29	ENSGT00940000157944 #31	ENSGT00940000162101
Hystricomorpha_b	ANCESTRAL SPECIES	22	ENSGT00940000161370	ENSGT00940000158512	ENSGT00390000003183	ENSGT00390000018434	ENSGT00940000155093.b	ENSGT00390000009194	ENSGT00390000017523	ENSGT01030000234555.a.a.a.c.a	ENSGT00940000153592.B.a	ENSGT00390000015077	ENSGT00940000157588	ENSGT00950000182803.A.a.a	ENSGT00940000157932	ENSGT00940000159416	ENSGT00940000156254	ENSGT00940000157239 #22	ENSGT00940000160079 #23	ENSGT00860000135721	ENSGT00940000160215 #24	ENSGT00940000154615 #25	ENSGT00940000160153 #26	ENSGT00940000161644 #28	ENSGT00940000163327 #29	ENSGT00940000157944 #31	ENSGT00940000162101
Long-tailed chinchilla	MODERN SPECIES	174	ZNF287 (ENSCLAG00000007484)	LRRC75A (ENSCLAG00000010115)	ENSCLAG00000009258	PIGL (ENSCLAG00000008117)	NCOR1 (ENSCLAG00000017349)	TTC19 (ENSCLAG00000006736)	ZSWIM7 (ENSCLAG00000006174)	ADORA2B (ENSCLAG00000006111)	SPECC1 (ENSCLAG00000013165)	AKAP10 (ENSCLAG00000009378)	ULK2 (ENSCLAG00000008483)	PRPSAP2 (ENSCLAG00000008926)	FAM83G (ENSCLAG00000008530)	SLC5A10 (ENSCLAG00000011277)	ENSCLAG00000010753	EPN2 (ENSCLAG00000007382) #22	B9D1 (ENSCLAG00000013112) #23	MAPK7 (ENSCLAG00000011109) #24	MFAP4 (ENSCLAG00000009440) #25	RNF112 (ENSCLAG00000008759) #26	SLC47A1 (ENSCLAG00000010505) #28	ENSCLAG00000012276	ENSCLAG00000007388 #29	ALDH3A2 (ENSCLAG00000013890) #31	ALDH3A1 (ENSCLAG00000013640)
Degu	MODERN SPECIES	381											ENSODEG00000000337	FAM83G (ENSODEG00000000249)	SLC5A10 (ENSODEG00000000154)	ENSODEG00000001194	ENSODEG00000018664	EPN2 (ENSODEG00000000790) #22	ENSODEG00000000687 #23	ENSODEG00000018601	MAPK7 (ENSODEG00000000439) #24	MFAP4 (ENSODEG00000000409) #25	ENSODEG00000018628	RNF112 (ENSODEG00000000180) #26	ENSODEG00000018676	SLC47A1 (ENSODEG00000001124) #28	ENSODEG00000001050	ENSODEG00000000983 #29	ALDH3A2 (ENSODEG00000000770) #31	ALDH3A1 (ENSODEG00000000680)
Guinea pig	MODERN SPECIES	71											ENSCPOG00000031268	PRPSAP2 (ENSCPOG00000010989)	SLC5A10 (ENSCPOG00000011115)	FAM83G (ENSCPOG00000023284)	ENSCPOG00000031331	EPN2 (ENSCPOG00000004842) #22	B9D1 (ENSCPOG00000000603) #23	MAPK7 (ENSCPOG00000027276) #24	MFAP4 (ENSCPOG00000026738) #25	RNF112 (ENSCPOG00000013927) #26	SLC47A1 (ENSCPOG00000011224) #28	ENSCPOG00000039527 #29	ALDH3A2 (ENSCPOG00000013785) #31	ALDH3A1 (ENSCPOG00000015670)	ENSCPOG00000023227	ABCA6 (ENSCPOG00000036808)	ABCA9 (ENSCPOG00000011990)	FAM20A (ENSCPOG00000010447)	PRKAR1A (ENSCPOG00000004159)	WIPI1 (ENSCPOG00000014341)	ARSG (ENSCPOG00000014338)
Naked mole-rat female	MODERN SPECIES	12	MRPS23 (ENSHGLG00000012208)	ENSHGLG00000044611	ENSHGLG00000042495	ENSHGLG00000039867	ENSHGLG00000042780	ENSHGLG00000003819	TMEM11 (ENSHGLG00000005715)	NATD1 (ENSHGLG00000007125)	MAP2K3 (ENSHGLG00000040410)	ENSHGLG00000033829	ENSHGLG00000003535	ENSHGLG00000004321	FAM83G (ENSHGLG00000007826)	ENSHGLG00000038108	ENSHGLG00000003298	EPN2 (ENSHGLG00000032563) #22	B9D1 (ENSHGLG00000041884) #23	MAPK7 (ENSHGLG00000013226) #24	MFAP4 (ENSHGLG00000018435) #25	RNF112 (ENSHGLG00000014434) #26	SLC47A1 (ENSHGLG00000008765) #28	ENSHGLG00000011530 #29	ENSHGLG00000039140	ALDH3A2 (ENSHGLG00000004669) #31	ENSHGLG00000005779	ENSHGLG00000021085	ENSHGLG00000047955	ENSHGLG00000015738	ENSHGLG00000015142	ENSHGLG00000044793	ENSHGLG00000011782