Hystricomorpha_a	ANCESTRAL SPECIES	67	ENSGT00940000159743 #7	ENSGT00940000159232.h.b #8	ENSGT00940000156190.g #9	ENSGT00940000156190.h #10	ENSGT00390000004840 #11	ENSGT00390000012547.b.d #12	ENSGT00940000156307.b #13	ENSGT00940000159094 #14	ENSGT00940000156597.b #15	ENSGT00640000091496 #16	ENSGT00390000001447 #17	ENSGT00530000063688.a #18	ENSGT00940000157652 #19	ENSGT01030000234570.d.a #20	ENSGT00530000063186.b.b #21	ENSGT00940000157192 #22	ENSGT00940000154695 #24	ENSGT00940000157137 #25	ENSGT00940000155053	ENSGT00720000108792.B #26	ENSGT00940000156532 #27	ENSGT00940000157295 #28	ENSGT00390000004553 #29	ENSGT00940000155126 #30	ENSGT00390000008926 #31
Guinea pig	MODERN SPECIES	13	PLEKHM3 (ENSCPOG00000004119) #7	CRYGC (ENSCPOG00000000186) #8	ENSCPOG00000022025 #9	CRYGA (ENSCPOG00000015047) #10	C2orf80 (ENSCPOG00000015050) #11	IDH1 (ENSCPOG00000013587) #12	PIKFYVE (ENSCPOG00000003863) #13	PTH2R (ENSCPOG00000027198) #14	ENSCPOG00000040677 #15	UNC80 (ENSCPOG00000008641) #16	ENSCPOG00000001502 #17	KANSL1L (ENSCPOG00000001503) #18	ACADL (ENSCPOG00000009871) #19	MYL1 (ENSCPOG00000009446) #20	LANCL1 (ENSCPOG00000009439) #21	CPS1 (ENSCPOG00000004146) #22	ENSCPOG00000035740 #23	ERBB4 (ENSCPOG00000011232) #24	IKZF2 (ENSCPOG00000013506) #25	VWC2L (ENSCPOG00000013515) #26	BARD1 (ENSCPOG00000011499) #27	ABCA12 (ENSCPOG00000005978) #28	ATIC (ENSCPOG00000012802) #29	FN1 (ENSCPOG00000012808) #30	MREG (ENSCPOG00000038481) #31
Hystricomorpha_b	ANCESTRAL SPECIES	52	ENSGT00940000159743 #7	ENSGT00940000159232.h.b #8	ENSGT00940000156190.g #9	ENSGT00940000156190.h #10	ENSGT00390000004840 #11	ENSGT00390000012547.b.d #12	ENSGT00940000156307.b #13	ENSGT00940000159094 #14	ENSGT00940000156597.b #15	ENSGT00640000091496 #16	ENSGT00390000001447 #17	ENSGT00530000063688.a #18	ENSGT00940000157652 #19	ENSGT01030000234570.d.a #20	ENSGT00530000063186.b.b #21	ENSGT00940000157192 #22	ENSGT00940000154695 #24	ENSGT00940000157137 #25	ENSGT00940000155053	ENSGT00720000108792.B #26	ENSGT00940000156532 #27	ENSGT00940000157295 #28	ENSGT00390000004553 #29	ENSGT00940000155126 #30	ENSGT00390000008926 #31
Degu	MODERN SPECIES	57	CRYGA (ENSODEG00000009878) #10	C2orf80 (ENSODEG00000009684) #11	ENSODEG00000009512 ##12	PIKFYVE (ENSODEG00000008877) #13	PTH2R (ENSODEG00000010800) #14	ENSODEG00000019756	ENSODEG00000019840	MAP2 (ENSODEG00000009342) #15	UNC80 (ENSODEG00000009853) #16	ENSODEG00000008423 #17	KANSL1L (ENSODEG00000008832) #18	ACADL (ENSODEG00000008088) #19	MYL1 (ENSODEG00000007814) #20	LANCL1 (ENSODEG00000013138) #21	ENSODEG00000008576	CPS1 (ENSODEG00000007917) #22	ENSODEG00000008980	ENSODEG00000013776	ERBB4 (ENSODEG00000009033) #24	IKZF2 (ENSODEG00000008010) #25	ENSODEG00000008509	ENSODEG00000008353	ENSODEG00000007901	VWC2L (ENSODEG00000008549) #26	ENSODEG00000009279	ENSODEG00000008221 #27	ABCA12 (ENSODEG00000012235) #28	ENSODEG00000008301 #29	FN1 (ENSODEG00000008281) #30	ENSODEG00000007722	ENSODEG00000007771
Long-tailed chinchilla	MODERN SPECIES	164	CRYGC (ENSCLAG00000010342) #8	ENSCLAG00000010298 #9	CRYGA (ENSCLAG00000013039) #10	C2orf80 (ENSCLAG00000012137) #11	IDH1 (ENSCLAG00000013186) #12	PIKFYVE (ENSCLAG00000005225) #13	PTH2R (ENSCLAG00000003358) #14	ENSCLAG00000003083	MAP2 (ENSCLAG00000003473) #15	UNC80 (ENSCLAG00000004587) #16	ENSCLAG00000003444 #17	KANSL1L (ENSCLAG00000005749) #18	ACADL (ENSCLAG00000004230) #19	MYL1 (ENSCLAG00000004096) #20	LANCL1 (ENSCLAG00000005272) #21	CPS1 (ENSCLAG00000003104) #22	ERBB4 (ENSCLAG00000006948) #24	IKZF2 (ENSCLAG00000003632) #25	ENSCLAG00000004744	VWC2L (ENSCLAG00000004321) #26	BARD1 (ENSCLAG00000007649) #27	ABCA12 (ENSCLAG00000006672) #28	ATIC (ENSCLAG00000008276) #29	FN1 (ENSCLAG00000004804) #30	MREG (ENSCLAG00000005783) #31