Murinae	ANCESTRAL SPECIES	1	ENSGT00510000049503 #8	ENSGT00530000063113.B #9	ENSGT00940000160586 #10	ENSGT00940000161566 #11	ENSGT00940000162210 #12	ENSGT00940000160611.i #13	ENSGT00940000160611.j #14	ENSGT00940000155740 #15	ENSGT00390000005315 #16	ENSGT01100000263775	ENSGT00940000154468 #17	ENSGT00940000156477 #18	ENSGT00940000163024 #19	ENSGT00390000003964.b #20	ENSGT00940000158442 #21	ENSGT00390000007796 #22	ENSGT00940000155308 #23	ENSGT00940000155458 #24	ENSGT00940000159849 #25	ENSGT00390000004786 #27	ENSGT00940000160331 #28	ENSGT00950000182872.f.a.a.b.x.a #29	ENSGT00390000011347 #30	ENSGT00950000182982.B #31	ENSGT00940000161648 #32	ENSGT00390000013867 #33	ENSGT00950000183202.a.a #34	ENSGT00940000160596 #35	ENSGT00390000002635 #36	ENSGT00950000183154.b.b #37	ENSGT00390000003422
Mus	ANCESTRAL SPECIES	1	ENSGT00940000161056 #7	ENSGT00510000049503 #8	ENSGT00530000063113.B #9	ENSGT00940000160586 #10	ENSGT00940000161566 #11	ENSGT00940000162210 #12	ENSGT00940000160611.i #13	ENSGT00940000160611.j #14	ENSGT00940000155740 #15	ENSGT00390000005315 #16	ENSGT00940000154468 #17	ENSGT00940000156477 #18	ENSGT00940000163024 #19	ENSGT00390000003964.b #20	ENSGT00940000158442 #21	ENSGT00390000007796 #22	ENSGT00940000155308 #23	ENSGT00940000155458 #24	ENSGT00940000159849 #25	ENSGT00390000004786 #27	ENSGT00940000160331 #28	ENSGT00950000182872.f.a.a.b.x.a #29	ENSGT00390000011347 #30	ENSGT00950000182982.B #31	ENSGT00940000161648 #32	ENSGT00390000013867 #33	ENSGT00950000183202.a.a #34	ENSGT00940000160596 #35	ENSGT00390000002635 #36	ENSGT00950000183154.b.b #37	ENSGT00390000003422
Mus_A	ANCESTRAL SPECIES		ENSGT00940000161056 #7	ENSGT00510000049503 #8	ENSGT00530000063113.B #9	ENSGT00940000160586 #10	ENSGT00940000161566 #11	ENSGT00940000162210 #12	ENSGT00940000160611.i #13	ENSGT00940000160611.j #14	ENSGT00940000155740 #15	ENSGT00390000005315 #16	ENSGT00940000154468.u #17	ENSGT00940000156477 #18	ENSGT00940000163024 #19	ENSGT00390000003964.b #20	ENSGT00940000158442 #21	ENSGT00390000007796 #22	ENSGT00940000155308 #23	ENSGT00940000155458 #24	ENSGT00940000159849 #25	ENSGT00390000004786 #27	ENSGT00940000160331 #28	ENSGT00950000182872.f.a.a.b.x.a #29	ENSGT00390000011347 #30	ENSGT00950000182982.B #31	ENSGT00940000161648 #32	ENSGT00390000013867 #33	ENSGT00950000183202.a.a #34	ENSGT00940000160596 #35	ENSGT00390000002635 #36	ENSGT00950000183154.b.b #37	ENSGT00390000003422
Mus_B	ANCESTRAL SPECIES	1	ENSGT00940000161056 #7	ENSGT00510000049503 #8	ENSGT00530000063113.B #9	ENSGT00940000160586 #10	ENSGT00940000161566 #11	ENSGT00940000162210 #12	ENSGT00940000160611.i #13	ENSGT00940000160611.j #14	ENSGT00940000155740 #15	ENSGT00390000005315 #16	ENSGT00940000154468.u #17	ENSGT00940000156477 #18	ENSGT00940000163024 #19	ENSGT00390000003964.b #20	ENSGT00940000158442 #21	ENSGT00390000007796 #22	ENSGT00940000155308 #23	ENSGT00940000155458 #24	ENSGT00940000159849 #25	ENSGT00390000004786 #27	ENSGT00940000160331 #28	ENSGT00950000182872.f.a.a.b.x.a #29	ENSGT00390000011347 #30	ENSGT00950000182982.B #31	ENSGT00940000161648 #32	ENSGT00390000013867 #33	ENSGT00950000183202.a.a #34	ENSGT00940000160596 #35	ENSGT00390000002635 #36	ENSGT00950000183154.b.b #37	ENSGT00390000003422
Mus_C	ANCESTRAL SPECIES		ENSGT00940000161056 #7	ENSGT00510000049503 #8	ENSGT00530000063113.B #9	ENSGT00940000160586 #10	ENSGT00940000161566 #11	ENSGT00940000162210 #12	ENSGT00940000160611.i #13	ENSGT00940000160611.j #14	ENSGT00940000155740 #15	ENSGT00390000005315 #16	ENSGT00940000154468.u #17	ENSGT00940000156477 #18	ENSGT00940000163024 #19	ENSGT00390000003964.b #20	ENSGT00940000158442 #21	ENSGT00390000007796 #22	ENSGT00940000155308 #23	ENSGT00940000155458 #24	ENSGT00940000159849 #25	ENSGT00390000004786 #27	ENSGT00940000160331 #28	ENSGT00950000182872.f.a.a.b.x.a #29	ENSGT00390000011347 #30	ENSGT00950000182982.B #31	ENSGT00940000161648 #32	ENSGT00390000013867 #33	ENSGT00950000183202.a.a #34	ENSGT00940000160596 #35	ENSGT00390000002635 #36	ENSGT00950000183154.b.b #37	ENSGT00390000003422
spretus	MODERN SPECIES	11	Cep250 (MGP_SPRETEiJ_G0025466) #7	6430550D23Rik (MGP_SPRETEiJ_G0025467) #8	Ergic3 (MGP_SPRETEiJ_G0025468) #9	MGP_SPRETEiJ_G0025469 #10	Spag4 (MGP_SPRETEiJ_G0025470) #11	MGP_SPRETEiJ_G0025471 #12	MGP_SPRETEiJ_G0025472 #13	MGP_SPRETEiJ_G0025473 #14	Nfs1 (MGP_SPRETEiJ_G0025474) #15	Romo1 (MGP_SPRETEiJ_G0025475) #16	Rbm39 (MGP_SPRETEiJ_G0025476) #17	Phf20 (MGP_SPRETEiJ_G0025477) #18	Scand1 (MGP_SPRETEiJ_G0025478) #19	Cnbd2 (MGP_SPRETEiJ_G0025479) #20	MGP_SPRETEiJ_G0025480 #21	Aar2 (MGP_SPRETEiJ_G0025481) #22	Dlgap4 (MGP_SPRETEiJ_G0025482) #23	Myl9 (MGP_SPRETEiJ_G0025483) #24	Tgif2 (MGP_SPRETEiJ_G0025484) #25	MGP_SPRETEiJ_G0025485 #26	Rab5if (MGP_SPRETEiJ_G0025486) #27	Sla2 (MGP_SPRETEiJ_G0025487) #28	Ndrg3 (MGP_SPRETEiJ_G0025488) #29	Dsn1 (MGP_SPRETEiJ_G0025489) #30	Soga1 (MGP_SPRETEiJ_G0025490) #31	Tldc2 (MGP_SPRETEiJ_G0025491) #32	Samhd1 (MGP_SPRETEiJ_G0025492) #33	Rbl1 (MGP_SPRETEiJ_G0025493) #34	Mroh8 (MGP_SPRETEiJ_G0025494) #35	Rpn2 (MGP_SPRETEiJ_G0025495) #36	Ghrh (MGP_SPRETEiJ_G0025496) #37
Steppe mouse	MODERN SPECIES	27	Cep250 (ENSMSIG00000003824) #7	6430550D23Rik (ENSMSIG00000004051) #8	Ergic3 (ENSMSIG00000004089) #9	Spag4 (ENSMSIG00000004457) #11	ENSMSIG00000004488 #12	Nfs1 (ENSMSIG00000004570) #15	Romo1 (ENSMSIG00000004626) #16	Rbm39 (ENSMSIG00000004662) #17	Phf20 (ENSMSIG00000004775) #18	Scand1 (ENSMSIG00000004809) #19	Cnbd2 (ENSMSIG00000004822) #20	ENSMSIG00000004935	Epb41l1 (ENSMSIG00000004982) #21	ENSMSIG00000005381	ENSMSIG00000005397	Aar2 (ENSMSIG00000005403) #22	Dlgap4 (ENSMSIG00000005429) #23	Myl9 (ENSMSIG00000005842) #24	ENSMSIG00000005860	Tgif2 (ENSMSIG00000005866) #25	Rab5if (ENSMSIG00000005901) #27	Sla2 (ENSMSIG00000005922) #28	ENSMSIG00000005964 ##29
Mouse	MODERN SPECIES	11	Cep250 (ENSMUSG00000038241) #7	6430550D23Rik (ENSMUSG00000074646) #8	Ergic3 (ENSMUSG00000005881) #9	Fer1l4 (ENSMUSG00000013338) #10	Spag4 (ENSMUSG00000038180) #11	Cpne1 (ENSMUSG00000074643)	Gm28036 (ENSMUSG00000098950)	Rbm12 (ENSMUSG00000089824)	Nfs1 (ENSMUSG00000027618) #15	Romo1 (ENSMUSG00000067847) #16	Rbm39 (ENSMUSG00000027620) #17	Phf20 (ENSMUSG00000038116) #18	Scand1 (ENSMUSG00000046229) #19	Cnbd2 (ENSMUSG00000038085) #20	Epb41l1 (ENSMUSG00000027624) #21	Aar2 (ENSMUSG00000027628) #22	Dlgap4 (ENSMUSG00000061689) #23	Myl9 (ENSMUSG00000067818) #24	Tgif2 (ENSMUSG00000062175) #25	Rab5if (ENSMUSG00000027637) #27	Sla2 (ENSMUSG00000027636) #28	Ndrg3 (ENSMUSG00000027634) #29	Dsn1 (ENSMUSG00000027635) #30	Soga1 (ENSMUSG00000055485) #31	Tldc2 (ENSMUSG00000074628) #32	Samhd1 (ENSMUSG00000027639) #33	Rbl1 (ENSMUSG00000027641) #34	Mroh8 (ENSMUSG00000074627) #35	Rpn2 (ENSMUSG00000027642) #36	Ghrh (ENSMUSG00000027643) #37	Manbal (ENSMUSG00000063019)
Ryukyu mouse	MODERN SPECIES	11	Cep250 (MGP_CAROLIEiJ_G0024544) #7	6430550D23Rik (MGP_CAROLIEiJ_G0024545) #8	Ergic3 (MGP_CAROLIEiJ_G0024546) #9	MGP_CAROLIEiJ_G0024547 #10	Spag4 (MGP_CAROLIEiJ_G0024548) #11	MGP_CAROLIEiJ_G0024549 #12	MGP_CAROLIEiJ_G0024550 #13	MGP_CAROLIEiJ_G0024551 #14	Nfs1 (MGP_CAROLIEiJ_G0024552) #15	Romo1 (MGP_CAROLIEiJ_G0024553) #16	Rbm39 (MGP_CAROLIEiJ_G0024554) #17	Phf20 (MGP_CAROLIEiJ_G0024555) #18	Scand1 (MGP_CAROLIEiJ_G0024556) #19	Cnbd2 (MGP_CAROLIEiJ_G0024557) #20	Epb41l1 (MGP_CAROLIEiJ_G0024558) #21	Aar2 (MGP_CAROLIEiJ_G0024559) #22	Dlgap4 (MGP_CAROLIEiJ_G0024560) #23	Myl9 (MGP_CAROLIEiJ_G0024561) #24	Tgif2 (MGP_CAROLIEiJ_G0024562) #25	MGP_CAROLIEiJ_G0024563	Rab5if (MGP_CAROLIEiJ_G0024564) #27	Sla2 (MGP_CAROLIEiJ_G0024565) #28	Ndrg3 (MGP_CAROLIEiJ_G0024566) #29	Dsn1 (MGP_CAROLIEiJ_G0024567) #30	Soga1 (MGP_CAROLIEiJ_G0024568) #31	Tldc2 (MGP_CAROLIEiJ_G0024569) #32	Samhd1 (MGP_CAROLIEiJ_G0024570) #33	Rbl1 (MGP_CAROLIEiJ_G0024571) #34	Mroh8 (MGP_CAROLIEiJ_G0024572) #35	Rpn2 (MGP_CAROLIEiJ_G0024573) #36	Ghrh (MGP_CAROLIEiJ_G0024574) #37
Shrew mouse	MODERN SPECIES	16	Cep250 (MGP_PahariEiJ_G0025989) #7	6430550D23Rik (MGP_PahariEiJ_G0025990) #8	Ergic3 (MGP_PahariEiJ_G0025991) #9	MGP_PahariEiJ_G0025992 #10	Spag4 (MGP_PahariEiJ_G0025993) #11	MGP_PahariEiJ_G0025994 #12	MGP_PahariEiJ_G0025995 #13	MGP_PahariEiJ_G0025996 #14	Nfs1 (MGP_PahariEiJ_G0025997) #15	Romo1 (MGP_PahariEiJ_G0025998) #16	Rbm39 (MGP_PahariEiJ_G0025999) #17	Phf20 (MGP_PahariEiJ_G0026000) #18	Scand1 (MGP_PahariEiJ_G0026001) #19	Cnbd2 (MGP_PahariEiJ_G0026002) #20	MGP_PahariEiJ_G0026003 #21	Aar2 (MGP_PahariEiJ_G0026004) #22	Dlgap4 (MGP_PahariEiJ_G0026005) #23	Myl9 (MGP_PahariEiJ_G0026006) #24	Tgif2 (MGP_PahariEiJ_G0026007) #25	Rab5if (MGP_PahariEiJ_G0026008) #27	Sla2 (MGP_PahariEiJ_G0026009) #28	Ndrg3 (MGP_PahariEiJ_G0026010) #29	Dsn1 (MGP_PahariEiJ_G0026011) #30	Soga1 (MGP_PahariEiJ_G0026012) #31	Tldc2 (MGP_PahariEiJ_G0026013) #32	Samhd1 (MGP_PahariEiJ_G0026014) #33	Rbl1 (MGP_PahariEiJ_G0026015) #34	Mroh8 (MGP_PahariEiJ_G0026016) #35	MGP_PahariEiJ_G0026017 #36	Ghrh (MGP_PahariEiJ_G0026018) #37	Manbal (MGP_PahariEiJ_G0026019)
Rat	MODERN SPECIES	13	Cep250 (ENSRNOG00000019340) #7	LOC102550306 (ENSRNOG00000047596) #8	Ergic3 (ENSRNOG00000031085) #9	Fer1l4 (ENSRNOG00000019467) #10	Spag4 (ENSRNOG00000048056) #11	Rbm12 (ENSRNOG00000069087) #12	Cpne1 (ENSRNOG00000019723) #14	Nfs1 (ENSRNOG00000045686) #15	Romo1 (ENSRNOG00000045555) #16	ENSRNOG00000068949	Rbm39 (ENSRNOG00000019848) #17	Phf20 (ENSRNOG00000019948) #18	Scand1 (ENSRNOG00000019987) #19	Cnbd2 (ENSRNOG00000019992) #20	Epb41l1 (ENSRNOG00000057817) #21	Aar2 (ENSRNOG00000020086) #22	Dlgap4 (ENSRNOG00000020225) #23	Myl9 (ENSRNOG00000020246) #24	Tgif2 (ENSRNOG00000042374) #25	Rab5if (ENSRNOG00000020317) #27	Sla2 (ENSRNOG00000020337) #28	LOC120101769 (ENSRNOG00000067832) #29	LOC102554288 (ENSRNOG00000064950) #29	LOC679863 (ENSRNOG00000036813) #29	Dsn1 (ENSRNOG00000006236) #30	ENSRNOG00000063901	Soga1 (ENSRNOG00000053240) #31	Tldc2 (ENSRNOG00000006395) #32	Samhd1 (ENSRNOG00000006418) #33	Rbl1 (ENSRNOG00000006921) #34	Mroh8 (ENSRNOG00000007341) #35