Euarchontoglires ANCESTRAL SPECIES 11 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 Primates ANCESTRAL SPECIES 19 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 Haplorrhini ANCESTRAL SPECIES 18 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 ENSGT01030000234513.B.a Simiiformes ANCESTRAL SPECIES 9 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00940000165171 #17 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g #29 ENSGT00390000015252.h #30 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 Catarrhini ANCESTRAL SPECIES 12 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00940000165171 #17 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 ENSGT00940000154606.`c.b #37 Hominoidea ANCESTRAL SPECIES 16 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00940000165171 #17 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.g.b #29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 Hominidae ANCESTRAL SPECIES 8 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00940000165171 #17 ENSGT00410000029400.a #18 ENSGT00410000029400.b #19 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.g.b #29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 Homo/Pan/Gorilla group ANCESTRAL SPECIES 9 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00390000011698.c.a.c.a.j.a.b #12 ENSGT00940000163063 #16 ENSGT00940000165171 #17 ENSGT00410000029400.a #18 ENSGT00410000029400.b #19 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.g.b #29 ENSGT00390000015252.h.a #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 Gorilla MODERN SPECIES 523 ENSGGOG00000043038 #7 ENSGGOG00000006280 #8 CHIC1 (ENSGGOG00000010930) #9 ENSGGOG00000037536 #10 CDX4 (ENSGGOG00000005465) #11 ENSGGOG00000041141 #12 NAP1L2 (ENSGGOG00000026343) #13 ENSGGOG00000043933 #14 ENSGGOG00000038606 #15 ENSGGOG00000013219 #16 ENSGGOG00000026191 #17 ENSGGOG00000001463 #18 ENSGGOG00000039205 #19 ENSGGOG00000024429 #20 PHKA1 (ENSGGOG00000006781) #21 HDAC8 (ENSGGOG00000011587) #22 CITED1 (ENSGGOG00000000290) #23 ENSGGOG00000023079 #24 ERCC6L (ENSGGOG00000022367) #25 PIN4 (ENSGGOG00000016008) #26 RTL5 (ENSGGOG00000037617) #27 NHSL2 (ENSGGOG00000012481) #28 ENSGGOG00000039791 #29 ENSGGOG00000026973 #30 ENSGGOG00000039521 #31 CXCR3 (ENSGGOG00000014881) #32 ENSGGOG00000014876 #33 OGT (ENSGGOG00000014867) #34 ENSGGOG00000036906 #35 ENSGGOG00000039493 #36 ENSGGOG00000039675 #37 Homo/Pan group ANCESTRAL SPECIES 9 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00390000011698.c.a.c.a.j.a.b #12 ENSGT00940000165171.a #17 ENSGT00940000165171.b #17 ENSGT00410000029400.a #18 ENSGT00410000029400.b #19 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h.a #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 ENSGT00940000154606.`c.b #37 Pan ANCESTRAL SPECIES 6 ENSGT00940000156154.b ENSGT00940000158214 ENSGT00940000155268.f.b.a.a.a ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00910000146883.A ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00390000011698.c.a.c.a.j.a.b #12 ENSGT00940000160311 #14 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.h.a #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 ENSGT00940000154606.`c.b #37 ENSGT00940000155242.m Bonobo MODERN SPECIES 369 UPRT (ENSPPAG00000035587) ABCB7 (ENSPPAG00000031273) NEXMIF (ENSPPAG00000015470) RLIM (ENSPPAG00000027958) SLC16A2 (ENSPPAG00000038613) ENSPPAG00000030864 ENSPPAG00000029442 ENSPPAG00000009768 CHIC1 (ENSPPAG00000038543) #9 ENSPPAG00000038434 #10 CDX4 (ENSPPAG00000036922) #11 ENSPPAG00000035410 #12 ENSPPAG00000012920 #14 ENSPPAG00000042207 #20 PHKA1 (ENSPPAG00000042021) #21 HDAC8 (ENSPPAG00000023056) #22 CITED1 (ENSPPAG00000037425) #23 ENSPPAG00000039737 #24 ERCC6L (ENSPPAG00000031861) #25 PIN4 (ENSPPAG00000035593) ##26 ENSPPAG00000026409 #27 NHSL2 (ENSPPAG00000037776) #28 ENSPPAG00000030502 #30 ENSPPAG00000029254 #31 CXCR3 (ENSPPAG00000042300) #32 ENSPPAG00000041492 #33 OGT (ENSPPAG00000030832) #34 ENSPPAG00000027775 #35 ENSPPAG00000017119 #36 ENSPPAG00000039421 #37 TAF1 (ENSPPAG00000009193) Chimpanzee MODERN SPECIES 972 RLIM (ENSPTRG00000022037) SLC16A2 (ENSPTRG00000022036) ENSPTRG00000052595 ENSPTRG00000047834 ENSPTRG00000049646 #7 ENSPTRG00000049815 CHIC1 (ENSPTRG00000028250) #9 ENSPTRG00000051207 #10 CDX4 (ENSPTRG00000022032) #11 ENSPTRG00000043791 #12 ENSPTRG00000028252 #14 ENSPTRG00000050068 #18 ENSPTRG00000048543 #19 ENSPTRG00000045935 #20 PHKA1 (ENSPTRG00000022029) #21 HDAC8 (ENSPTRG00000051531) #22 CITED1 (ENSPTRG00000022026) #23 RPS4X (ENSPTRG00000022025) #24 ERCC6L (ENSPTRG00000022023) #25 PIN4 (ENSPTRG00000049495) ##26 RTL5 (ENSPTRG00000039375) #27 NHSL2 (ENSPTRG00000028255) #28 ENSPTRG00000050221 ##29 ENSPTRG00000044432 ##29 ENSPTRG00000046702 #30 ENSPTRG00000047794 #31 CXCR3 (ENSPTRG00000022018) #32 GCNA (ENSPTRG00000022017) #33 OGT (ENSPTRG00000049301) #34 ENSPTRG00000045772 #35 ENSPTRG00000044195 #36 Human MODERN SPECIES 1827 RLIM (ENSG00000131263) SLC16A2 (ENSG00000147100) ZCCHC13 (ENSG00000187969) CHIC1 (ENSG00000204116) #9 CDX4 (ENSG00000131264) #11 NAP1L2 (ENSG00000186462) #13 PABPC1L2A (ENSG00000186288) #14 PABPC1L2B (ENSG00000184388) #14 FAM236A (ENSG00000275520) #19 FAM236C (ENSG00000283594) #18 DMRTC1 (ENSG00000269502) #17 FAM236D (ENSG00000225396) #18 FAM236B (ENSG00000268994) #19 DMRTC1B (ENSG00000184911) #17 PHKA1 (ENSG00000067177) #21 HDAC8 (ENSG00000147099) #22 ENSG00000285547 CITED1 (ENSG00000125931) #23 RPS4X (ENSG00000198034) ##24 ERCC6L (ENSG00000186871) #25 PIN4 (ENSG00000102309) ##26 RTL5 (ENSG00000242732) #27 NHSL2 (ENSG00000204131) #28 CXorf49B (ENSG00000215113) ##29 CXorf49 (ENSG00000215115) ##29 ENSG00000283599 #30 CXCR3 (ENSG00000186810) #32 GCNA (ENSG00000147174) #33 OGT (ENSG00000147162) #34 TAF1 (ENSG00000147133) ITGB1BP2 (ENSG00000147166) Orangutan MODERN SPECIES 242 ABCB7 (ENSPPYG00000020483) NEXMIF (ENSPPYG00000020482) RLIM (ENSPPYG00000020481) SLC16A2 (ENSPPYG00000020479) ENSPPYG00000040239 ZCCHC13 (ENSPPYG00000020478) ENSPPYG00000020475 CHIC1 (ENSPPYG00000020473) #9 CDX4 (ENSPPYG00000020472) #11 NAP1L2 (ENSPPYG00000020470) #13 ENSPPYG00000020468 #14 ENSPPYG00000030199 #19 ENSPPYG00000020466 #18 ENSPPYG00000030578 #19 PHKA1 (ENSPPYG00000020465) #21 HDAC8 (ENSPPYG00000020464) #22 CITED1 (ENSPPYG00000032934) #23 RPS4X (ENSPPYG00000020462) ##24 ERCC6L (ENSPPYG00000020461) #25 PIN4 (ENSPPYG00000020460) ##26 RTL5 (ENSPPYG00000041447) #27 NHSL2 (ENSPPYG00000020459) #28 ENSPPYG00000035100 ##29 ENSPPYG00000035498 #30 ENSPPYG00000020909 #31 CXCR3 (ENSPPYG00000020458) #32 GCNA (ENSPPYG00000020457) #33 OGT (ENSPPYG00000020456) #34 TAF1 (ENSPPYG00000020453) ITGB1BP2 (ENSPPYG00000020452) NONO (ENSPPYG00000020451) Gibbon MODERN SPECIES 449 ABCB7 (ENSNLEG00000001065) NEXMIF (ENSNLEG00000001059) RLIM (ENSNLEG00000001050) ENSNLEG00000001044 ENSNLEG00000030978 #7 CHIC1 (ENSNLEG00000033690) #9 ENSNLEG00000034883 #10 CDX4 (ENSNLEG00000001025) #11 NAP1L2 (ENSNLEG00000019044) #13 ENSNLEG00000018128 #14 ENSNLEG00000029617 #16 ENSNLEG00000034046 #18 ENSNLEG00000029049 #18 ENSNLEG00000018125 PHKA1 (ENSNLEG00000018124) #21 HDAC8 (ENSNLEG00000018123) #22 CITED1 (ENSNLEG00000018122) #23 ENSNLEG00000018121 #24 ERCC6L (ENSNLEG00000036284) #25 PIN4 (ENSNLEG00000036320) ##26 ENSNLEG00000018852 RTL5 (ENSNLEG00000018851) #27 NHSL2 (ENSNLEG00000018118) #28 ENSNLEG00000001121 ##29 ENSNLEG00000029115 #30 CXCR3 (ENSNLEG00000001116) #32 ENSNLEG00000036058 OGT (ENSNLEG00000001038) #34 ENSNLEG00000032518 #36 ENSNLEG00000030598 #37 TAF1 (ENSNLEG00000000934) Cercopithecidae ANCESTRAL SPECIES 19 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000008296.b.a.a.h ##8 ENSGT00910000146883.A ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400.e #18 ENSGT00940000165171 #17 ENSGT00410000029400.f #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00390000006051.a.b.a.a.j.b.a ENSGT00510000047029.z.e.e.b.b #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 Cercopithecinae ANCESTRAL SPECIES 13 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00530000063666.a.m.a.a.b ENSGT00390000008296.b.a.a.h ##8 ENSGT00910000146883.A ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400.e #18 ENSGT00410000029400.f #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00390000006051.a.b.a.a.j.b.a ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 Vervet Monkey MODERN SPECIES 203 ZDHHC15 (ENSCSAG00000010880) UPRT (ENSCSAG00000010895) ABCB7 (ENSCSAG00000010981) NEXMIF (ENSCSAG00000011002) RLIM (ENSCSAG00000011014) SLC16A2 (ENSCSAG00000011031) ZCCHC13 (ENSCSAG00000000095) ENSCSAG00000000097 ENSCSAG00000011040 CHIC1 (ENSCSAG00000011042) #9 CDX4 (ENSCSAG00000011047) #11 NAP1L2 (ENSCSAG00000000099) #13 ENSCSAG00000000102 #14 ENSCSAG00000011069 #16 PHKA1 (ENSCSAG00000011091) #21 HDAC8 (ENSCSAG00000011100) #22 CITED1 (ENSCSAG00000011106) #23 ENSCSAG00000011155 ##24 ERCC6L (ENSCSAG00000011173) #25 NHSL2 (ENSCSAG00000011202) #28 RTL5 (ENSCSAG00000000104) #27 ENSCSAG00000011207 ##29 ENSCSAG00000011211 #31 CXCR3 (ENSCSAG00000011214) #32 OGT (ENSCSAG00000011228) #34 ENSCSAG00000011236 TAF1 (ENSCSAG00000011320) ITGB1BP2 (ENSCSAG00000011356) ENSCSAG00000011364 ENSCSAG00000011368 ZMYM3 (ENSCSAG00000011407) Cercopithecinae_a ANCESTRAL SPECIES 11 ENSGT00940000156281.i ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00390000008296.b.a.a.h ##8 ENSGT00910000146883.A ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000165171 #17 ENSGT00410000029400.f #18 ENSGT00550000074828.a.g.b.l ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00390000006051.a.b.a.a.j.b.a ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 Macaca ANCESTRAL SPECIES 13 ENSGT00940000158214 ENSGT00940000155266.lb ENSGT01020000230412.D ENSGT00940000156281.i ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000165171 #17 ENSGT00410000029400.f #18 ENSGT00550000074828.a.g.b.l ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 Pig-tailed macaque MODERN SPECIES 337 ENSMNEG00000037004 #16 ENSMNEG00000029054 #18 ENSMNEG00000004008 ENSMNEG00000036085 #20 PHKA1 (ENSMNEG00000038795) #21 HDAC8 (ENSMNEG00000033648) #22 CITED1 (ENSMNEG00000032803) #23 ENSMNEG00000012820 ##24 ERCC6L (ENSMNEG00000030867) #25 ENSMNEG00000033596 #26 RTL5 (ENSMNEG00000037520) #27 NHSL2 (ENSMNEG00000040254) #28 Macaca_a ANCESTRAL SPECIES 11 ENSGT00940000163487 ENSGT00940000154465.C.p ENSGT00940000158214 ENSGT00940000155266.lb ENSGT01020000230412.D ENSGT00940000156281.i ENSGT00940000159746 ENSGT00940000155753.g ENSGT00940000159450 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00550000074828.a.g.b.l ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00910000147593 #36 ENSGT00940000154606.`c.b #37 ENSGT00940000155242.m Rhesus MODERN SPECIES 327 ENSMMUG00000010418 ZCCHC13 (ENSMMUG00000053524) ENSMMUG00000064792 ENSMMUG00000063858 ENSMMUG00000051178 CHIC1 (ENSMMUG00000023236) #9 CDX4 (ENSMMUG00000013449) #11 NAP1L2 (ENSMMUG00000004793) #13 ENSMMUG00000009740 #14 ENSMMUG00000039929 #14 ENSMMUG00000053182 #18 ENSMMUG00000059926 #18 ENSMMUG00000057710 #17 ENSMMUG00000055457 PHKA1 (ENSMMUG00000007593) #21 CITED1 (ENSMMUG00000003296) #22 RPS4X (ENSMMUG00000003295) #24 ERCC6L (ENSMMUG00000012957) #25 PIN4 (ENSMMUG00000055786) #26 RTL5 (ENSMMUG00000059483) #27 NHSL2 (ENSMMUG00000021924) #28 ENSMMUG00000014885 #30 ENSMMUG00000017783 #31 CXCR3 (ENSMMUG00000032424) #32 GCNA (ENSMMUG00000011469) #33 OGT (ENSMMUG00000015238) #34 ENSMMUG00000056450 #35 ENSMMUG00000048382 #37 TAF1 (ENSMMUG00000005663) ENSMMUG00000054587 ITGB1BP2 (ENSMMUG00000020479) Crab-eating macaque MODERN SPECIES 175 CHIC1 (ENSMFAG00000011399) #9 ENSMFAG00000044694 ENSMFAG00000057332 ENSMFAG00000057045 CDX4 (ENSMFAG00000053268) #11 NAP1L2 (ENSMFAG00000003271) #13 ENSMFAG00000062023 #14 ENSMFAG00000062898 #14 ENSMFAG00000054792 #18 ENSMFAG00000048150 ENSMFAG00000034324 #18 ENSMFAG00000051621 #18 ENSMFAG00000039331 #16 ENSMFAG00000007994 PHKA1 (ENSMFAG00000038543) #21 HDAC8 (ENSMFAG00000003160) #22 ENSMFAG00000038135 ##24 ERCC6L (ENSMFAG00000045509) #25 PIN4 (ENSMFAG00000043832) #26 NHSL2 (ENSMFAG00000033144) #28 ENSMFAG00000031405 ##29 ENSMFAG00000000394 #30 ENSMFAG00000044396 #31 CXCR3 (ENSMFAG00000031295) #32 GCNA (ENSMFAG00000046224) #33 OGT (ENSMFAG00000001803) #34 ENSMFAG00000036860 #35 ENSMFAG00000054759 #36 ENSMFAG00000031355 #37 ENSMFAG00000060403 ENSMFAG00000047652 Cercopithecinae_b ANCESTRAL SPECIES 46 ENSGT00390000008296.b.a.a.h ##8 ENSGT00910000146883.A ENSGT00390000003601.a #9 ENSGT00940000154744.m.a #10 ENSGT00940000162554 #11 ENSGT00940000160311 #14 ENSGT00410000029400.f #18 ENSGT00940000163063 #16 ENSGT00410000029400.e #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00390000006051.a.b.a.a.j.b.a ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.g.a.a ##29 ENSGT00390000015252.h #30 ENSGT00390000015252.g.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b #34 ENSGT00950000183584 #35 ENSGT00940000154606.`c.b #37 Olive baboon MODERN SPECIES 792 ENSPANG00000030463 ABCB7 (ENSPANG00000026346) UPRT (ENSPANG00000017665) ENSPANG00000001066 ZDHHC15 (ENSPANG00000019929) ENSPANG00000038963 MAGEE2 (ENSPANG00000005315) ENSPANG00000013474 ENSPANG00000041868 CDX4 (ENSPANG00000044820) #11 ENSPANG00000011549 #14 ENSPANG00000035979 #18 ENSPANG00000048671 #18 ENSPANG00000046739 #16 PHKA1 (ENSPANG00000014929) #21 HDAC8 (ENSPANG00000006122) #22 ENSPANG00000038920 #24 ENSPANG00000043866 FGF16 (ENSPANG00000002965) ATRX (ENSPANG00000024984) MAGT1 (ENSPANG00000012904) ENSPANG00000008508 ATP7A (ENSPANG00000019286) ENSPANG00000011695 TAF9B (ENSPANG00000006121) ENSPANG00000051297 ENSPANG00000041600 ENSPANG00000038489 LPAR4 (ENSPANG00000014311) P2RY10 (ENSPANG00000010847) ENSPANG00000043750 Cercopithecinae_d ANCESTRAL SPECIES 207 ENSGT00940000163063 #16 ENSGT00410000029400.f #18 ENSGT00410000029400.e #18 ENSGT00940000160311 #14 ENSGT00550000074828.a.g.b.l ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00390000006051.a.b.a.a.j.b.a ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 Sooty mangabey MODERN SPECIES 412 ENSCATG00000043214 PHKA1 (ENSCATG00000033409) #21 HDAC8 (ENSCATG00000031035) #22 CITED1 (ENSCATG00000036514) #23 ENSCATG00000029683 #24 ENSCATG00000032170 ERCC6L (ENSCATG00000038031) #25 NHSL2 (ENSCATG00000029367) #28 RTL5 (ENSCATG00000043303) #27 Drill MODERN SPECIES 1261 GOLIM4 (ENSMLEG00000032160) ENSMLEG00000034698 ENSMLEG00000034654 ENSMLEG00000034097 ENSMLEG00000022728 WDR49 (ENSMLEG00000033324) SERPINI2 (ENSMLEG00000029650) ZBBX (ENSMLEG00000012570) ENSMLEG00000030656 #18 ENSMLEG00000027299 ENSMLEG00000030049 #20 PHKA1 (ENSMLEG00000035533) #21 HDAC8 (ENSMLEG00000031268) #22 Rhinopithecus DUPLICATION Rhinopithecus ANCESTRAL SPECIES 486 ENSGT00940000157843.g #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00940000156837 #25 ENSGT00510000047029.z.e.e.a #26 ENSGT00390000006051.a.b.a.a.j.b.a ENSGT00510000047029.z.e.e.b.b #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 Golden snub-nosed monkey MODERN SPECIES 1818 HDAC8 (ENSRROG00000045442) #22 CITED1 (ENSRROG00000023044) #23 ENSRROG00000037958 #24 ERCC6L (ENSRROG00000042561) #25 ENSRROG00000017904 #26 RTL5 (ENSRROG00000003440) #27 NHSL2 (ENSRROG00000017791) #28 Rhinopithecus DUPLICATION Rhinopithecus ANCESTRAL SPECIES 694 ENSGT00940000165171 #17 ENSGT00410000029400.f #18 ENSGT00410000029400.e #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843.h.a #22 Golden snub-nosed monkey MODERN SPECIES 966 ENSRROG00000030432 #22 Black snub-nosed monkey MODERN SPECIES 274 ENSRBIG00000031391 #21 ENSRBIG00000033697 #22 Rhinopithecus ANCESTRAL SPECIES ENSGT00940000157843.h.b #22 Black snub-nosed monkey MODERN SPECIES 1503 ENSRBIG00000037379 #22 Platyrrhini ANCESTRAL SPECIES 33 ENSGT00940000163182 ENSGT00390000016333 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000165171 #17 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 ENSGT00390000015252.h #30 ENSGT00390000015252.g #29 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 ENSGT01030000234513.B.a Cebidae ANCESTRAL SPECIES 18 ENSGT00940000160087 ENSGT00940000163182 ENSGT00390000016333.s.a ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000165171 #17 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 ENSGT00390000015252.h #30 ENSGT00390000015252.g #29 ENSGT01050000244848.B.a.b #32 ENSGT00440000040163 #33 ENSGT00940000155085.b.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 Cebidae_a ANCESTRAL SPECIES 143 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z.d.a ##26 ENSGT00950000182963.b.b #28 Bolivian squirrel monkey MODERN SPECIES 255 PHKA1 (ENSSBOG00000025021) #21 HDAC8 (ENSSBOG00000025932) #22 ENSSBOG00000004798 CITED1 (ENSSBOG00000016010) #23 ENSSBOG00000024943 #24 PIN4 (ENSSBOG00000026467) ##26 ERCC6L (ENSSBOG00000029416) #25 NHSL2 (ENSSBOG00000024555) #28 ENSSBOG00000028108 ENSSBOG00000029281 ENSSBOG00000030907 #30 Capuchin MODERN SPECIES 644 HDAC8 (ENSCCAG00000026098) #22 CITED1 (ENSCCAG00000035860) #23 RPS4X (ENSCCAG00000026154) ##24 ERCC6L (ENSCCAG00000023790) #25 ENSCCAG00000018203 ##26 NHSL2 (ENSCCAG00000029553) #28 Marmoset MODERN SPECIES 78 ENSCJAG00000067434 ENSCJAG00000044335 CHIC1 (ENSCJAG00000016436) #9 CDX4 (ENSCJAG00000011367) #11 ENSCJAG00000070896 ENSCJAG00000073630 ENSCJAG00000071801 #14 ENSCJAG00000084463 #14 ENSCJAG00000074437 ENSCJAG00000081881 #18 ENSCJAG00000073913 #17 ENSCJAG00000069950 #18 ENSCJAG00000079778 #18 ENSCJAG00000000229 #16 PHKA1 (ENSCJAG00000004244) #21 HDAC8 (ENSCJAG00000004217) #22 ENSCJAG00000081431 ENSCJAG00000058709 CITED1 (ENSCJAG00000004200) #23 RPS4X (ENSCJAG00000004192) ##24 ERCC6L (ENSCJAG00000022332) #25 ENSCJAG00000074350 ENSCJAG00000004992 ##26 RTL5 (ENSCJAG00000064303) #27 NHSL2 (ENSCJAG00000005012) #28 ENSCJAG00000084928 ENSCJAG00000086496 #30 ENSCJAG00000032034 #30 ENSCJAG00000032793 #29 CXCR3 (ENSCJAG00000006395) #32 ENSCJAG00000031514 Mas night monkey MODERN SPECIES 1018 ENSANAG00000024569 #18 ENSANAG00000032031 #18 PHKA1 (ENSANAG00000023223) #21 ENSANAG00000024193 HDAC8 (ENSANAG00000030857) #22 CITED1 (ENSANAG00000022811) #23 ENSANAG00000026660 ##24 PIN4 (ENSANAG00000030057) ##26 ERCC6L (ENSANAG00000022378) #25 NHSL2 (ENSANAG00000027692) #28 CXCR3 (ENSANAG00000029785) #32 ENSANAG00000003202 #33 Tarsier MODERN SPECIES 6703 ENSTSYG00000037163 HDAC8 (ENSTSYG00000009589) #22 CITED1 (ENSTSYG00000002080) #23 RPS4X (ENSTSYG00000003137) #24 ERCC6L (ENSTSYG00000013701) #25 ENSTSYG00000035103 ##26 Strepsirrhini ANCESTRAL SPECIES 37 ENSGT00940000163182 ENSGT00390000016333 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311.g.b #14 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 ENSGT01030000234513.B.a Lemuriformes ANCESTRAL SPECIES 49 ENSGT00940000163182 ENSGT00390000016333 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311.g.b #14 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029.z #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 Mouse lemur MODERN SPECIES 169 UPRT (ENSMICG00000001079) ENSMICG00000014514 NEXMIF (ENSMICG00000028218) RLIM (ENSMICG00000017508) SLC16A2 (ENSMICG00000043965) CHIC1 (ENSMICG00000026372) #9 ENSMICG00000032913 CDX4 (ENSMICG00000011271) #11 ENSMICG00000047642 #14 ENSMICG00000042715 #16 ENSMICG00000043211 #18 ENSMICG00000047883 #18 PHKA1 (ENSMICG00000007902) #21 ENSMICG00000031459 ENSMICG00000028991 HDAC8 (ENSMICG00000007893) #22 CITED1 (ENSMICG00000016613) #23 ENSMICG00000016606 #24 ERCC6L (ENSMICG00000035415) #25 ENSMICG00000001640 #26 NHSL2 (ENSMICG00000008280) #28 ENSMICG00000038295 CXCR3 (ENSMICG00000038479) #32 OGT (ENSMICG00000003078) #34 ENSMICG00000017461 ENSMICG00000042674 ITGB1BP2 (ENSMICG00000000235) NONO (ENSMICG00000000232) ZMYM3 (ENSMICG00000014095) GJB1 (ENSMICG00000014093) NLGN3 (ENSMICG00000014073) Lemuriformes_a ANCESTRAL SPECIES 95 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442 ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 ENSGT00440000037505.b Greater bamboo lemur MODERN SPECIES 961 PHKA1 (ENSPSMG00000001521) #21 HDAC8 (ENSPSMG00000002315) #22 ENSPSMG00000002985 ENSPSMG00000002988 Coquerels sifaka MODERN SPECIES 56 PHKA1 (ENSPCOG00000019881) #21 HDAC8 (ENSPCOG00000008094) #22 CITED1 (ENSPCOG00000013588) #23 RPS4X (ENSPCOG00000027468) ##24 ERCC6L (ENSPCOG00000024286) #25 NHSL2 (ENSPCOG00000021201) #28 CXCR3 (ENSPCOG00000022834) #32 OGT (ENSPCOG00000017367) #34 ENSPCOG00000007901 ENSPCOG00000024110 ITGB1BP2 (ENSPCOG00000020946) NONO (ENSPCOG00000008197) ZMYM3 (ENSPCOG00000022189) GJB1 (ENSPCOG00000009326) NLGN3 (ENSPCOG00000015168) MED12 (ENSPCOG00000023218) IL2RG (ENSPCOG00000022304) Bushbaby MODERN SPECIES 410 PHKA1 (ENSOGAG00000016652) #21 ENSOGAG00000030470 HDAC8 (ENSOGAG00000011814) #22 CITED1 (ENSOGAG00000011810) #23 ENSOGAG00000011808 #24 Euarchontoglires_A ANCESTRAL SPECIES 11 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400 #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442.sc ENSGT00940000160693 ENSGT01030000234513.B.a Glires ANCESTRAL SPECIES 10 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00920000150764.a ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400 #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Rodentia ANCESTRAL SPECIES 10 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00920000150764.a ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400 #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Rodentia_B ANCESTRAL SPECIES 16 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400 #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 Myomorpha ANCESTRAL SPECIES 6 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400 #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 Muroidea ANCESTRAL SPECIES 50 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00410000029400 #18 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000156489.m ENSGT00900000143537 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00940000168699 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #29 ENSGT00390000015252.c.a.b #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000156489.m ENSGT00900000143537 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00940000168699 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.c.a.a #29 ENSGT00390000015252.c.a.b #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000156489.m ENSGT00940000168699 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 ENSGT00440000037505.b Golden Hamster MODERN SPECIES 727 Dmrtc1b (ENSMAUG00000010338) #16 ENSMAUG00000008738 #21 Hdac8 (ENSMAUG00000006310) #22 Cited1 (ENSMAUG00000020556) #23 Rps4x (ENSMAUG00000013223) #24 Pin4 (ENSMAUG00000015251) #26 Rtl5 (ENSMAUG00000009321) #27 Nhsl2 (ENSMAUG00000013469) #28 ENSMAUG00000007111 Cxcr3 (ENSMAUG00000006658) #32 ENSMAUG00000015275 #34 ENSMAUG00000010446 #34 Taf1 (ENSMAUG00000018664) Itgb1bp2 (ENSMAUG00000007311) Nono (ENSMAUG00000016243) Zmym3 (ENSMAUG00000015148) Gjb1 (ENSMAUG00000011973) Nlgn3 (ENSMAUG00000004367) Chinese hamster chok1gshd MODERN SPECIES 16 Zcchc13 (ENSCGRG00001009786) ENSCGRG00001004584 Tsx (ENSCGRG00001005790) Chic1 (ENSCGRG00001011931) #9 ENSCGRG00001012274 Cdx4 (ENSCGRG00001020397) #11 ENSCGRG00001012385 ENSCGRG00001007129 ENSCGRG00001015812 Eif2s3y (ENSCGRG00001016219) Nap1l2 (ENSCGRG00001003632) #13 ENSCGRG00001023387 #14 Dmrtc1a (ENSCGRG00001018624) ENSCGRG00001024855 Phka1 (ENSCGRG00001020129) #21 Hdac8 (ENSCGRG00001022455) #22 Cited1 (ENSCGRG00001022122) #23 Rps4x (ENSCGRG00001018159) ##24 Ercc6l (ENSCGRG00001016668) #25 Pin4 (ENSCGRG00001023057) #26 Nhsl2 (ENSCGRG00001018292) #28 Rtl5 (ENSCGRG00001010452) #27 ENSCGRG00001012656 Cxcr3 (ENSCGRG00001013701) #32 ENSCGRG00001014167 Ogt (ENSCGRG00001011594) #34 8030474K03Rik (ENSCGRG00001022034) #29 Gm4779 (ENSCGRG00001010077) #29 Cricetidae_B ANCESTRAL SPECIES 54 ENSGT00940000156489.m ENSGT00900000143537 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00940000168699 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.c.a.a #29 ENSGT00390000015252.c.a.b #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Prairie vole MODERN SPECIES 360 ENSMOCG00000007642 Atp11c (ENSMOCG00000002605) ENSMOCG00000012975 Gm7073 (ENSMOCG00000018667) Sox3 (ENSMOCG00000009062) ENSMOCG00000013955 Ldoc1 (ENSMOCG00000008324) ENSMOCG00000006967 Magec2 (ENSMOCG00000016294) ENSMOCG00000017215 Slitrk4 (ENSMOCG00000008180) ENSMOCG00000014952 Ctag2 (ENSMOCG00000017014) ENSMOCG00000015005 Phka1 (ENSMOCG00000013482) #21 Hdac8 (ENSMOCG00000019902) #22 Cited1 (ENSMOCG00000013938) #23 ENSMOCG00000014451 #24 Ercc6l (ENSMOCG00000021344) #25 ENSMOCG00000000929 #26 Nhsl2 (ENSMOCG00000002880) #28 Rtl5 (ENSMOCG00000000142) #27 Cxcr3 (ENSMOCG00000007041) #32 Ogt (ENSMOCG00000013563) #34 Taf1 (ENSMOCG00000001297) Itgb1bp2 (ENSMOCG00000021266) ENSMOCG00000005532 Zmym3 (ENSMOCG00000007682) Gjb1 (ENSMOCG00000009230) Nlgn3 (ENSMOCG00000015847) Med12 (ENSMOCG00000013807) Northern American deer mouse MODERN SPECIES 475 Zcchc13 (ENSPEMG00000030313) ENSPEMG00000028568 Tsx (ENSPEMG00000008527) Chic1 (ENSPEMG00000030446) #9 Cdx4 (ENSPEMG00000022957) #11 ENSPEMG00000031031 ENSPEMG00000028389 ENSPEMG00000029441 #14 ENSPEMG00000026745 #14 Dmrtc1a (ENSPEMG00000009870) 1700031F05Rik (ENSPEMG00000019008) Dmrtc1b (ENSPEMG00000013412) #16 ENSPEMG00000016284 #18 ENSPEMG00000014842 Phka1 (ENSPEMG00000007806) #21 Hdac8 (ENSPEMG00000013611) #22 ENSPEMG00000029011 Cited1 (ENSPEMG00000004332) #23 ENSPEMG00000016482 #24 Ercc6l (ENSPEMG00000007920) #25 Pin4 (ENSPEMG00000009326) #26 Nhsl2 (ENSPEMG00000006950) #28 Rtl5 (ENSPEMG00000028195) #27 8030474K03Rik (ENSPEMG00000028164) #29 Gm4779 (ENSPEMG00000015753) #29 Cxcr3 (ENSPEMG00000018113) #32 Ogt (ENSPEMG00000012399) #34 Taf1 (ENSPEMG00000011524) ENSPEMG00000029064 Itgb1bp2 (ENSPEMG00000004183) Nono (ENSPEMG00000011150) Murinae ANCESTRAL SPECIES 14 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00520000059967 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00940000168699 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Mus ANCESTRAL SPECIES 9 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000156489.m ENSGT00520000059967 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00940000168699 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Mus_A ANCESTRAL SPECIES 15 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00900000143788 ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000156489.m ENSGT00520000059967 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00940000168699 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Mus_B ANCESTRAL SPECIES 14 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00900000143788 ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00940000156489.m ENSGT00520000059967 ENSGT00940000163063 #16 ENSGT00410000029400 #18 ENSGT00940000168699 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #29 ENSGT00390000015252.c.a.b #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 Mouse MODERN SPECIES 37 Gm26992 (ENSMUSG00000098078) Tsx (ENSMUSG00000031329) Chic1 (ENSMUSG00000031327) #9 Cdx4 (ENSMUSG00000031326) #11 Nap1l2 (ENSMUSG00000082229) #13 1700018G05Rik (ENSMUSG00000109745) 1700011M02Rik (ENSMUSG00000079476) #18 Dmrtc1a (ENSMUSG00000031323) 1700031F05Rik (ENSMUSG00000032894) Dmrtc1c2 (ENSMUSG00000067561) Dmrtc1c1 (ENSMUSG00000067562) Dmrtc1b (ENSMUSG00000073027) #16 Gm9112 (ENSMUSG00000079479) #18 Gm3880 (ENSMUSG00000081443) Phka1 (ENSMUSG00000034055) #21 Hdac8 (ENSMUSG00000067567) #22 Cited1 (ENSMUSG00000051159) #23 Rps4x (ENSMUSG00000031320) #24 Ercc6l (ENSMUSG00000051220) #25 Pin4 (ENSMUSG00000079480) #26 Rtl5 (ENSMUSG00000049191) #27 Nhsl2 (ENSMUSG00000079481) #28 Gm3858 (ENSMUSG00000118638) #29 8030474K03Rik (ENSMUSG00000046774) #29 Gm4779 (ENSMUSG00000045010) #29 Cxcr3 (ENSMUSG00000050232) #32 Ogt (ENSMUSG00000034160) #34 Taf1 (ENSMUSG00000031314) Itgb1bp2 (ENSMUSG00000031312) Nono (ENSMUSG00000031311) Zmym3 (ENSMUSG00000031310) Mus_C ANCESTRAL SPECIES 22 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00900000143788 ENSGT00520000061207 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00940000163372 #13 ENSGT00410000029400 #18 ENSGT00940000156489.m ENSGT00520000059967 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a spretus MODERN SPECIES 19 Abcb7 (MGP_SPRETEiJ_G0034479) Nexmif (MGP_SPRETEiJ_G0034478) Rlim (MGP_SPRETEiJ_G0034477) Slc16a2 (MGP_SPRETEiJ_G0034476) Zcchc13 (MGP_SPRETEiJ_G0034475) MGP_SPRETEiJ_G0034474 Tsx (MGP_SPRETEiJ_G0034473) Chic1 (MGP_SPRETEiJ_G0034472) #9 Cdx4 (MGP_SPRETEiJ_G0034471) #11 Nap1l2 (MGP_SPRETEiJ_G0034470) #13 MGP_SPRETEiJ_G0034469 #18 Dmrtc1a (MGP_SPRETEiJ_G0034468) MGP_SPRETEiJ_G0034467 MGP_SPRETEiJ_G0034466 Phka1 (MGP_SPRETEiJ_G0034465) #21 Hdac8 (MGP_SPRETEiJ_G0034464) #22 Cited1 (MGP_SPRETEiJ_G0034463) #23 MGP_SPRETEiJ_G0034462 ##24 Ercc6l (MGP_SPRETEiJ_G0034461) #25 Pin4 (MGP_SPRETEiJ_G0034460) #26 Rtl5 (MGP_SPRETEiJ_G0034459) #27 Nhsl2 (MGP_SPRETEiJ_G0034458) #28 8030474K03Rik (MGP_SPRETEiJ_G0034457) #29 Cxcr3 (MGP_SPRETEiJ_G0034456) #32 Ogt (MGP_SPRETEiJ_G0034455) #34 Taf1 (MGP_SPRETEiJ_G0034454) Itgb1bp2 (MGP_SPRETEiJ_G0034453) Zmym3 (MGP_SPRETEiJ_G0034451) Gjb1 (MGP_SPRETEiJ_G0034450) Nlgn3 (MGP_SPRETEiJ_G0034449) Med12 (MGP_SPRETEiJ_G0034448) Steppe mouse MODERN SPECIES 3385 ENSMSIG00000008475 #21 Hdac8 (ENSMSIG00000024883) #22 Ryukyu mouse MODERN SPECIES 19 Uprt (MGP_CAROLIEiJ_G0033316) Abcb7 (MGP_CAROLIEiJ_G0033315) Nexmif (MGP_CAROLIEiJ_G0033314) Slc16a2 (MGP_CAROLIEiJ_G0033312) Zcchc13 (MGP_CAROLIEiJ_G0033311) MGP_CAROLIEiJ_G0033310 Tsx (MGP_CAROLIEiJ_G0033309) Chic1 (MGP_CAROLIEiJ_G0033308) #9 Cdx4 (MGP_CAROLIEiJ_G0033307) #11 Nap1l2 (MGP_CAROLIEiJ_G0033306) #13 MGP_CAROLIEiJ_G0033305 #18 Dmrtc1a (MGP_CAROLIEiJ_G0033304) MGP_CAROLIEiJ_G0033303 MGP_CAROLIEiJ_G0033302 Phka1 (MGP_CAROLIEiJ_G0033301) #21 Hdac8 (MGP_CAROLIEiJ_G0033300) #22 Cited1 (MGP_CAROLIEiJ_G0033299) #23 Rps4x (MGP_CAROLIEiJ_G0033298) #24 Ercc6l (MGP_CAROLIEiJ_G0033297) #25 MGP_CAROLIEiJ_G0033296 #26 Rtl5 (MGP_CAROLIEiJ_G0033295) #27 Nhsl2 (MGP_CAROLIEiJ_G0033294) #28 MGP_CAROLIEiJ_G0033293 #29 Cxcr3 (MGP_CAROLIEiJ_G0033292) #32 Ogt (MGP_CAROLIEiJ_G0033291) #34 Taf1 (MGP_CAROLIEiJ_G0033290) Itgb1bp2 (MGP_CAROLIEiJ_G0033289) MGP_CAROLIEiJ_G0033288 Zmym3 (MGP_CAROLIEiJ_G0033287) Gjb1 (MGP_CAROLIEiJ_G0033286) Nlgn3 (MGP_CAROLIEiJ_G0033285) Shrew mouse MODERN SPECIES 23 Uprt (MGP_PahariEiJ_G0031853) Abcb7 (MGP_PahariEiJ_G0031852) Nexmif (MGP_PahariEiJ_G0031851) Rlim (MGP_PahariEiJ_G0031850) Slc16a2 (MGP_PahariEiJ_G0031849) Zcchc13 (MGP_PahariEiJ_G0031848) Tsx (MGP_PahariEiJ_G0031847) Chic1 (MGP_PahariEiJ_G0031846) #9 Cdx4 (MGP_PahariEiJ_G0031845) #11 Nap1l2 (MGP_PahariEiJ_G0031844) #13 Dmrtc1a (MGP_PahariEiJ_G0031843) MGP_PahariEiJ_G0031842 MGP_PahariEiJ_G0031841 MGP_PahariEiJ_G0031840 #16 Phka1 (MGP_PahariEiJ_G0031839) #21 Hdac8 (MGP_PahariEiJ_G0031838) #22 Cited1 (MGP_PahariEiJ_G0031837) #23 Rps4x (MGP_PahariEiJ_G0031836) #24 Ercc6l (MGP_PahariEiJ_G0031835) #25 Pin4 (MGP_PahariEiJ_G0031834) #26 Rtl5 (MGP_PahariEiJ_G0031833) #27 Nhsl2 (MGP_PahariEiJ_G0031832) #28 MGP_PahariEiJ_G0031831 #29 Cxcr3 (MGP_PahariEiJ_G0031830) #32 Ogt (MGP_PahariEiJ_G0031829) #34 MGP_PahariEiJ_G0031828 Itgb1bp2 (MGP_PahariEiJ_G0031827) Nono (MGP_PahariEiJ_G0031826) Zmym3 (MGP_PahariEiJ_G0031825) Gjb1 (MGP_PahariEiJ_G0031824) Nlgn3 (MGP_PahariEiJ_G0031823) Rat MODERN SPECIES 46 Cdx4 (ENSRNOG00000002974) #11 LOC100361671 (ENSRNOG00000003008) RGD1562521 (ENSRNOG00000003009) AABR07039336.2 (ENSRNOG00000003025) #13 AABR07039334.1 (ENSRNOG00000022267) #14 ENSRNOG00000064026 Fam236d (ENSRNOG00000069062) #18 Dmrtc1b (ENSRNOG00000022286) #16 Dmrtc1c1 (ENSRNOG00000068646) LOC120099304 (ENSRNOG00000069736) ENSRNOG00000068588 ENSRNOG00000065493 AABR07039229.2 (ENSRNOG00000048295) LOC679960 (ENSRNOG00000003062) Phka1 (ENSRNOG00000003063) #21 Hdac8 (ENSRNOG00000003122) #22 Cited1 (ENSRNOG00000003189) #23 Rps4x (ENSRNOG00000003201) ##24 Ercc6l (ENSRNOG00000003208) #25 Pin4 (ENSRNOG00000050051) #26 Rtl5 (ENSRNOG00000045779) #27 Nhsl2 (ENSRNOG00000037951) #28 LOC102555994 (ENSRNOG00000060462) #29 Cxhxorf49 (ENSRNOG00000025211) #29 LOC102553785 (ENSRNOG00000025200) #29 Cxcr3 (ENSRNOG00000003305) #32 LOC102548506 (ENSRNOG00000066689) Ogt (ENSRNOG00000003359) #34 Taf1 (ENSRNOG00000002565) Itgb1bp2 (ENSRNOG00000003596) Nono (ENSRNOG00000003689) Upper Galilee mountains blind mole rat MODERN SPECIES 1742 Dmrtc1b (ENSNGAG00000017712) #16 Phka1 (ENSNGAG00000018710) #21 Hdac8 (ENSNGAG00000000558) #22 Cited1 (ENSNGAG00000010654) #23 Rps4x (ENSNGAG00000011593) #24 Ercc6l (ENSNGAG00000021063) #25 ENSNGAG00000000797 #26 Nhsl2 (ENSNGAG00000006702) #28 Rtl5 (ENSNGAG00000014752) #27 Cxcr3 (ENSNGAG00000012996) #32 Ogt (ENSNGAG00000017957) #34 ENSNGAG00000013716 Taf1 (ENSNGAG00000019411) Itgb1bp2 (ENSNGAG00000011479) Nono (ENSNGAG00000010857) Zmym3 (ENSNGAG00000016287) Gjb1 (ENSNGAG00000008737) Nlgn3 (ENSNGAG00000011722) Lesser Egyptian jerboa DUPLICATION Lesser Egyptian jerboa MODERN SPECIES 80 ENSJJAG00000013578 Chic1 (ENSJJAG00000022346) #9 ENSJJAG00000015455 #11 ENSJJAG00000007003 Nap1l2 (ENSJJAG00000005294) #13 ENSJJAG00000009723 ENSJJAG00000007037 #14 ENSJJAG00000017642 ENSJJAG00000020172 #16 Phka1 (ENSJJAG00000016074) #21 ENSJJAG00000013599 #22 Cited1 (ENSJJAG00000021265) #23 Rps4x (ENSJJAG00000018258) #24 Ercc6l (ENSJJAG00000022875) #25 Pin4 (ENSJJAG00000022110) #26 ENSJJAG00000023103 #11 ENSJJAG00000008830 Cxcr3 (ENSJJAG00000024149) #32 ENSJJAG00000020751 ENSJJAG00000013564 #34 ENSJJAG00000016438 #34 Taf1 (ENSJJAG00000016231) Itgb1bp2 (ENSJJAG00000022114) ENSJJAG00000017151 Zmym3 (ENSJJAG00000017423) Gjb1 (ENSJJAG00000015275) Lesser Egyptian jerboa MODERN SPECIES 71 Zfhx3 (ENSJJAG00000004370) ENSJJAG00000016503 Pmfbp1 (ENSJJAG00000021758) Dhx38 (ENSJJAG00000015149) Txnl4b (ENSJJAG00000014020) Hp (ENSJJAG00000000389) Dhodh (ENSJJAG00000004380) Pkd1l3 (ENSJJAG00000019074) Ist1 (ENSJJAG00000009199) Zfp821 (ENSJJAG00000017771) ENSJJAG00000004633 ENSJJAG00000006838 Ap1g1 (ENSJJAG00000022831) Phlpp2 (ENSJJAG00000018183) Marveld3 (ENSJJAG00000015672) ENSJJAG00000016248 #22 Tat (ENSJJAG00000015605) Chst4 (ENSJJAG00000016154) Zfp612 (ENSJJAG00000014956) Tle7 (ENSJJAG00000020440) Calb2 (ENSJJAG00000019534) ENSJJAG00000013980 ENSJJAG00000010966 Hydin (ENSJJAG00000024000) ENSJJAG00000018488 Vac14 (ENSJJAG00000000270) Mtss2 (ENSJJAG00000015697) Il34 (ENSJJAG00000013016) Sf3b3 (ENSJJAG00000003948) Cog4 (ENSJJAG00000013653) Fcsk (ENSJJAG00000022615) Kangaroo rat MODERN SPECIES 545 ENSDORG00000014278 Phka1 (ENSDORG00000013605) #21 Hdac8 (ENSDORG00000013603) #22 ENSDORG00000028620 Cited1 (ENSDORG00000025773) #23 Rps4x (ENSDORG00000008571) #24 Ercc6l (ENSDORG00000007865) #25 ENSDORG00000024313 #26 Nhsl2 (ENSDORG00000013046) #28 Rtl5 (ENSDORG00000024359) #27 Rodentia_A ANCESTRAL SPECIES 9 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00920000150764.a ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252 #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Sciuridae ANCESTRAL SPECIES 35 ENSGT00940000163487 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00920000150764.a ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.b #29 ENSGT00390000015252.a.a #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 Marmotini ANCESTRAL SPECIES 66 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.a.b #29 ENSGT00390000015252.a.a #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00390000018613.b.t.a ENSGT00950000183030.m.a.a.b.b.a.b.b.a.a.a ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 Marmotini_b ANCESTRAL SPECIES 251 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 Squirrel MODERN SPECIES 362 ENSSTOG00000020182 PHKA1 (ENSSTOG00000008458) #21 HDAC8 (ENSSTOG00000008440) #22 CITED1 (ENSSTOG00000008435) #23 ENSSTOG00000028692 ##24 ENSSTOG00000025956 DGAT2L6 (ENSSTOG00000024800) AWAT1 (ENSSTOG00000011451) P2RY4 (ENSSTOG00000015697) Arr3 (ENSSTOG00000011462) PDZD11 (ENSSTOG00000027107) KIF4A (ENSSTOG00000009604) GDPD2 (ENSSTOG00000004472) DLG3 (ENSSTOG00000009640) TEX11 (ENSSTOG00000009656) SLC7A3 (ENSSTOG00000014255) SNX12 (ENSSTOG00000028586) FOXO4 (ENSSTOG00000014587) Arctic ground squirrel MODERN SPECIES 605 ENSUPAG00010015251 #16 PHKA1 (ENSUPAG00010015278) #21 HDAC8 (ENSUPAG00010016655) #22 CITED1 (ENSUPAG00010016670) #23 ENSUPAG00010016687 #24 ERCC6L (ENSUPAG00010016692) #25 PIN4 (ENSUPAG00010016701) #26 NHSL2 (ENSUPAG00010016706) #28 RTL5 (ENSUPAG00010016731) #27 Alpin marmot MODERN SPECIES 74 ENSMMMG00000021453 #16 ENSMMMG00000021472 PHKA1 (ENSMMMG00000021479) #21 HDAC8 (ENSMMMG00000021613) #22 CITED1 (ENSMMMG00000021638) #23 ENSMMMG00000021648 #24 ERCC6L (ENSMMMG00000021653) #25 PIN4 (ENSMMMG00000021657) #26 NHSL2 (ENSMMMG00000021658) #28 RTL5 (ENSMMMG00000021665) #27 ENSMMMG00000021670 #29 ENSMMMG00000021674 #29 ENSMMMG00000021680 #29 CXCR3 (ENSMMMG00000021685) #32 ENSMMMG00000021687 #34 ENSMMMG00000021699 ENSMMMG00000021704 ENSMMMG00000021716 ENSMMMG00000021790 Eurasian red squirrel MODERN SPECIES 156 ABCB7 (ENSSVLG00005014285) NEXMIF (ENSSVLG00005015017) RLIM (ENSSVLG00005015096) SLC16A2 (ENSSVLG00005015129) ZCCHC13 (ENSSVLG00005015163) ENSSVLG00005015182 #9 CDX4 (ENSSVLG00005015316) #11 NAP1L2 (ENSSVLG00005015352) #13 ENSSVLG00005015384 #13 ENSSVLG00005015416 #14 ENSSVLG00005015435 #14 ENSSVLG00005015457 #17 ENSSVLG00005015556 #18 ENSSVLG00005015655 #18 PHKA1 (ENSSVLG00005015757) #21 HDAC8 (ENSSVLG00005016008) #22 CITED1 (ENSSVLG00005016381) #23 ENSSVLG00005016444 #24 PIN4 (ENSSVLG00005016533) #26 ERCC6L (ENSSVLG00005016734) #25 NHSL2 (ENSSVLG00005016754) #28 RTL5 (ENSSVLG00005016947) #27 ENSSVLG00005016970 #29 ENSSVLG00005017206 #29 ENSSVLG00005017271 #29 ENSSVLG00005017338 #29 ENSSVLG00005017662 #29 ENSSVLG00005017896 #29 SERP1 (ENSSVLG00005017996) ENSSVLG00005018019 #29 CXCR3 (ENSSVLG00005018095) #32 Hystricomorpha ANCESTRAL SPECIES 11 ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00940000163182 ENSGT00390000016333 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00390000003601.a #9 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.a.a ##24 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837.`b #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a Hystricomorpha_a ANCESTRAL SPECIES 51 ENSGT00390000012178.g.a.a ENSGT00390000012030.b.a ENSGT00940000155902 ENSGT00940000160087 ENSGT00940000163182 ENSGT00390000016333 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00390000003601.a #9 ENSGT00940000160311 #14 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00990000205127 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837.`b #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 ENSGT00440000037505.b Hystricomorpha_b ANCESTRAL SPECIES 74 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00990000205127 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837.`b #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000159429 ENSGT00940000154442.sc.b ENSGT00940000160693 ENSGT01030000234513.B.a ENSGT00940000159580 ENSGT00440000037505.b Long-tailed chinchilla MODERN SPECIES 182 PHKA1 (ENSCLAG00000013584) #21 HDAC8 (ENSCLAG00000015755) #22 ENSCLAG00000015363 ENSCLAG00000015266 #24 ENSCLAG00000015218 #25 PIN4 (ENSCLAG00000014880) #26 RTL5 (ENSCLAG00000014510) #27 NHSL2 (ENSCLAG00000011242) #28 CXCR3 (ENSCLAG00000010111) #32 ENSCLAG00000009475 OGT (ENSCLAG00000006474) #34 ENSCLAG00000004940 ITGB1BP2 (ENSCLAG00000003431) NONO (ENSCLAG00000003642) ZMYM3 (ENSCLAG00000003585) GJB1 (ENSCLAG00000004895) NLGN3 (ENSCLAG00000006482) Degu MODERN SPECIES 321 PHKA1 (ENSODEG00000002058) #21 ENSODEG00000002103 HDAC8 (ENSODEG00000002146) #22 ENSODEG00000002191 ENSODEG00000002215 ENSODEG00000002252 RPS4X (ENSODEG00000002268) ##24 ERCC6L (ENSODEG00000002328) #25 ENSODEG00000002336 #26 NHSL2 (ENSODEG00000002360) #28 RTL5 (ENSODEG00000002380) #27 CXCR3 (ENSODEG00000002401) #32 OGT (ENSODEG00000002656) #34 ENSODEG00000002771 ITGB1BP2 (ENSODEG00000002957) ENSODEG00000002994 ENSODEG00000018894 ZMYM3 (ENSODEG00000003059) Guinea pig MODERN SPECIES 26 ENSCPOG00000036844 MAGT1 (ENSCPOG00000027554) ATRX (ENSCPOG00000007873) FGF16 (ENSCPOG00000007870) MAGEE1 (ENSCPOG00000039465) PBDC1 (ENSCPOG00000006794) ZDHHC15 (ENSCPOG00000006742) UPRT (ENSCPOG00000035232) ABCB7 (ENSCPOG00000010708) NEXMIF (ENSCPOG00000014831) RLIM (ENSCPOG00000031438) SLC16A2 (ENSCPOG00000000465) CHIC1 (ENSCPOG00000035632) #9 ENSCPOG00000009525 #14 PHKA1 (ENSCPOG00000005675) #21 HDAC8 (ENSCPOG00000005671) #22 ENSCPOG00000003816 ENSCPOG00000006337 #24 ERCC6L (ENSCPOG00000011407) #25 PIN4 (ENSCPOG00000031758) #26 NHSL2 (ENSCPOG00000005172) #28 RTL5 (ENSCPOG00000021990) #27 CXCR3 (ENSCPOG00000008446) #32 OGT (ENSCPOG00000014682) #34 ENSCPOG00000035003 ENSCPOG00000039595 ITGB1BP2 (ENSCPOG00000038156) ENSCPOG00000010263 ZMYM3 (ENSCPOG00000010256) NLGN3 (ENSCPOG00000006193) MED12 (ENSCPOG00000000903) Naked mole-rat female MODERN SPECIES 31 ENSHGLG00000032788 ENSHGLG00000002294 ENSHGLG00000002255 ATP7A (ENSHGLG00000001804) ENSHGLG00000033714 ENSHGLG00000002230 ENSHGLG00000039396 PGK1 (ENSHGLG00000033746) ENSHGLG00000037603 ENSHGLG00000005962 ENSHGLG00000045054 CYSLTR1 (ENSHGLG00000036741) ENSHGLG00000018958 ENSHGLG00000009342 #21 ENSHGLG00000045192 HDAC8 (ENSHGLG00000015554) #22 CITED1 (ENSHGLG00000013001) #23 ENSHGLG00000009172 ##24 ERCC6L (ENSHGLG00000016594) #25 PIN4 (ENSHGLG00000043461) #26 ENSHGLG00000033358 NHSL2 (ENSHGLG00000004791) #28 RTL5 (ENSHGLG00000043760) #27 ENSHGLG00000047657 ENSHGLG00000050364 ENSHGLG00000037492 #29 ENSHGLG00000006799 ENSHGLG00000034062 ENSHGLG00000008499 #32 ENSHGLG00000050614 ENSHGLG00000042327 Lagomorpha ANCESTRAL SPECIES 40 ENSGT00390000003601.a #9 ENSGT00940000162554 #11 ENSGT00920000150764.a ENSGT00940000163372 #13 ENSGT00940000160311 #14 ENSGT00940000163063 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.e.a #29 ENSGT00390000015252.f #29 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #34 ENSGT00940000155242 ENSGT00940000163331 ENSGT00940000159429 ENSGT00940000154442.sc.a.b ENSGT00940000160693 Pika MODERN SPECIES 2015 HDAC8 (ENSOPRG00000002816) #22 Rabbit MODERN SPECIES 1401 ENSOCUG00000029369 FAM199X (ENSOCUG00000014228) SLC25A53 (ENSOCUG00000003541) ENSOCUG00000014764 ENSOCUG00000021083 ENSOCUG00000024276 CHIC1 (ENSOCUG00000009801) #9 CDX4 (ENSOCUG00000013356) #11 ENSOCUG00000027857 NAP1L2 (ENSOCUG00000007414) #13 ENSOCUG00000002565 #14 ENSOCUG00000025806 #16 ENSOCUG00000029608 #16 ENSOCUG00000024072 #16 PHKA1 (ENSOCUG00000024271) #21 HDAC8 (ENSOCUG00000013317) #22 ENSOCUG00000013315 #23 ENSOCUG00000015749 ##24 ERCC6L (ENSOCUG00000008724) #25 PIN4 (ENSOCUG00000008715) #26 RTL5 (ENSOCUG00000008707) #27 NHSL2 (ENSOCUG00000014345) #28 ENSOCUG00000022701 #29 ENSOCUG00000021556 #29 ENSOCUG00000029373 #29 ENSOCUG00000029215 #29 ENSOCUG00000036122 #29 ENSOCUG00000003502 ENSOCUG00000028210 #29 ENSOCUG00000030259 #29 CXCR3 (ENSOCUG00000015578) #32 Tree shrew MODERN SPECIES 5123 PHKA1 (ENSTBEG00000015214) #21 HDAC8 (ENSTBEG00000014893) #22