Rodentia_A	ANCESTRAL SPECIES	9	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00920000150764.a	ENSGT00940000163372	ENSGT00940000160311	ENSGT00940000163063	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a ##24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191 #29	ENSGT00390000015252 #32	ENSGT01050000244848.B.a.b #35	ENSGT00940000155085.b	ENSGT00940000155242	ENSGT00940000163331	ENSGT00940000159429	ENSGT00940000154442.sc.b	ENSGT00940000160693	ENSGT01030000234513.B.a
Hystricomorpha	ANCESTRAL SPECIES	11	ENSGT00390000012030.b.a #8	ENSGT00940000155902	ENSGT00940000160087	ENSGT00940000163182	ENSGT00390000016333	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00390000003601.a	ENSGT00940000160311	ENSGT00940000163063	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.b.a.a #24	ENSGT00390000005569.x.a.b.a ##24	ENSGT00940000156837.`b #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191 #29	ENSGT01050000244848.B.a.b #35	ENSGT00940000155085.b	ENSGT00940000155242	ENSGT00940000163331	ENSGT00940000159429	ENSGT00940000154442.sc.b	ENSGT00940000160693	ENSGT01030000234513.B.a
Naked mole-rat female	MODERN SPECIES	31	ENSHGLG00000032788 #7	ENSHGLG00000002294 #8	ENSHGLG00000002255 #9	ATP7A (ENSHGLG00000001804) #10	ENSHGLG00000033714 #11	ENSHGLG00000002230 #12	ENSHGLG00000039396 #13	PGK1 (ENSHGLG00000033746) #14	ENSHGLG00000037603 #15	ENSHGLG00000005962 #16	ENSHGLG00000045054 #17	CYSLTR1 (ENSHGLG00000036741) #18	ENSHGLG00000018958 #19	ENSHGLG00000009342 #20	ENSHGLG00000045192 #21	HDAC8 (ENSHGLG00000015554) #22	CITED1 (ENSHGLG00000013001) #23	ENSHGLG00000009172 #24	ERCC6L (ENSHGLG00000016594) #25	PIN4 (ENSHGLG00000043461) #26	ENSHGLG00000033358 #27	NHSL2 (ENSHGLG00000004791) #28	RTL5 (ENSHGLG00000043760) #29	ENSHGLG00000047657 #30	ENSHGLG00000050364 #31	ENSHGLG00000037492 #32	ENSHGLG00000006799 #33	ENSHGLG00000034062 #34	ENSHGLG00000008499 #35	ENSHGLG00000050614 #36	ENSHGLG00000042327 #37
Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00390000012178.g.a.a ##9	ENSGT00390000012030.b.a #8	ENSGT00940000155902	ENSGT00940000160087	ENSGT00940000163182	ENSGT00390000016333	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00390000003601.a	ENSGT00940000160311	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00990000205127	ENSGT00390000005569.x.a.b.a ##24	ENSGT00940000156837.`b #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191 #29	ENSGT01050000244848.B.a.b #35	ENSGT00940000155085.b	ENSGT00940000155242	ENSGT00940000159429	ENSGT00940000154442.sc.b	ENSGT00940000160693	ENSGT01030000234513.B.a	ENSGT00940000159580	ENSGT00440000037505.b
Hystricomorpha_b	ANCESTRAL SPECIES	74															ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00990000205127	ENSGT00390000005569.x.a.b.a ##24	ENSGT00940000156837.`b #25	ENSGT00510000047029 #26	ENSGT00940000163191 #29	ENSGT00950000182963.b.b #28	ENSGT01050000244848.B.a.b #35	ENSGT00940000155085.b	ENSGT00940000155242	ENSGT00940000159429	ENSGT00940000154442.sc.b	ENSGT00940000160693	ENSGT01030000234513.B.a	ENSGT00940000159580	ENSGT00440000037505.b
Long-tailed chinchilla	MODERN SPECIES	182															PHKA1 (ENSCLAG00000013584) #20	HDAC8 (ENSCLAG00000015755) #22	ENSCLAG00000015363	ENSCLAG00000015266 ##24	ENSCLAG00000015218 #25	PIN4 (ENSCLAG00000014880) #26	RTL5 (ENSCLAG00000014510) #29	NHSL2 (ENSCLAG00000011242) #28	CXCR3 (ENSCLAG00000010111) #35	ENSCLAG00000009475	OGT (ENSCLAG00000006474)	ENSCLAG00000004940	ITGB1BP2 (ENSCLAG00000003431)	NONO (ENSCLAG00000003642)	ZMYM3 (ENSCLAG00000003585)	GJB1 (ENSCLAG00000004895)	NLGN3 (ENSCLAG00000006482)
Degu	MODERN SPECIES	321														PHKA1 (ENSODEG00000002058) #20	ENSODEG00000002103	HDAC8 (ENSODEG00000002146) #22	ENSODEG00000002191	ENSODEG00000002215	ENSODEG00000002252	RPS4X (ENSODEG00000002268) ##24	ERCC6L (ENSODEG00000002328) #25	ENSODEG00000002336 #26	NHSL2 (ENSODEG00000002360) #28	RTL5 (ENSODEG00000002380) #29	CXCR3 (ENSODEG00000002401) #35	OGT (ENSODEG00000002656)	ENSODEG00000002771	ITGB1BP2 (ENSODEG00000002957)	ENSODEG00000002994	ENSODEG00000018894	ZMYM3 (ENSODEG00000003059)
Guinea pig	MODERN SPECIES	26	ENSCPOG00000036844 ##9	MAGT1 (ENSCPOG00000027554) #8	ATRX (ENSCPOG00000007873)	FGF16 (ENSCPOG00000007870)	MAGEE1 (ENSCPOG00000039465)	PBDC1 (ENSCPOG00000006794)	ZDHHC15 (ENSCPOG00000006742)	UPRT (ENSCPOG00000035232)	ABCB7 (ENSCPOG00000010708)	NEXMIF (ENSCPOG00000014831)	RLIM (ENSCPOG00000031438)	SLC16A2 (ENSCPOG00000000465)	CHIC1 (ENSCPOG00000035632)	ENSCPOG00000009525	PHKA1 (ENSCPOG00000005675) #20	HDAC8 (ENSCPOG00000005671) #22	ENSCPOG00000003816	ENSCPOG00000006337 ##24	ERCC6L (ENSCPOG00000011407) #25	PIN4 (ENSCPOG00000031758) #26	NHSL2 (ENSCPOG00000005172) #28	RTL5 (ENSCPOG00000021990) #29	CXCR3 (ENSCPOG00000008446) #35	OGT (ENSCPOG00000014682)	ENSCPOG00000035003	ENSCPOG00000039595	ITGB1BP2 (ENSCPOG00000038156)	ENSCPOG00000010263	ZMYM3 (ENSCPOG00000010256)	NLGN3 (ENSCPOG00000006193)	MED12 (ENSCPOG00000000903)
Sciuridae	ANCESTRAL SPECIES	35	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00920000150764.a	ENSGT00940000163372	ENSGT00940000160311	ENSGT00940000163063	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a ##24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191 #29	ENSGT00390000015252.b #32	ENSGT00390000015252.a.a #32	ENSGT01050000244848.B.a.b #35	ENSGT00940000155085.b	ENSGT00940000155242	ENSGT00940000163331	ENSGT00940000159429	ENSGT00940000154442.sc.b	ENSGT00940000160693
Marmotini	ANCESTRAL SPECIES	66														ENSGT00940000163063	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a ##24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191 #29	ENSGT00390000015252.a.b #32	ENSGT00390000015252.a.a #32	ENSGT01050000244848.B.a.b #35	ENSGT00940000155085.b	ENSGT00390000018613.b.t.a	ENSGT00950000183030.m.a.a.b.b.a.b.b.a.a.a	ENSGT00940000155242	ENSGT00940000163331	ENSGT00940000159429
Marmotini_b	ANCESTRAL SPECIES	251														ENSGT00940000163063	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a ##24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191 #29
Squirrel	MODERN SPECIES	362														ENSSTOG00000020182	PHKA1 (ENSSTOG00000008458) #20	HDAC8 (ENSSTOG00000008440) #22	CITED1 (ENSSTOG00000008435) #23	ENSSTOG00000028692 ##24	ENSSTOG00000025956	DGAT2L6 (ENSSTOG00000024800)	AWAT1 (ENSSTOG00000011451)	P2RY4 (ENSSTOG00000015697)	Arr3 (ENSSTOG00000011462)	PDZD11 (ENSSTOG00000027107)	KIF4A (ENSSTOG00000009604)	GDPD2 (ENSSTOG00000004472)	DLG3 (ENSSTOG00000009640)	TEX11 (ENSSTOG00000009656)	SLC7A3 (ENSSTOG00000014255)	SNX12 (ENSSTOG00000028586)	FOXO4 (ENSSTOG00000014587)
Arctic ground squirrel	MODERN SPECIES	605														ENSUPAG00010015251	PHKA1 (ENSUPAG00010015278) #20	HDAC8 (ENSUPAG00010016655) #22	CITED1 (ENSUPAG00010016670) #23	ENSUPAG00010016687 ##24	ERCC6L (ENSUPAG00010016692) #25	PIN4 (ENSUPAG00010016701) #26	NHSL2 (ENSUPAG00010016706) #28	RTL5 (ENSUPAG00010016731) #29
Alpin marmot	MODERN SPECIES	74													ENSMMMG00000021453	ENSMMMG00000021472	PHKA1 (ENSMMMG00000021479) #20	HDAC8 (ENSMMMG00000021613) #22	CITED1 (ENSMMMG00000021638) #23	ENSMMMG00000021648 ##24	ERCC6L (ENSMMMG00000021653) #25	PIN4 (ENSMMMG00000021657) #26	NHSL2 (ENSMMMG00000021658) #28	RTL5 (ENSMMMG00000021665) #29	ENSMMMG00000021670 #32	ENSMMMG00000021674 #32	ENSMMMG00000021680 #32	CXCR3 (ENSMMMG00000021685) #35	ENSMMMG00000021687	ENSMMMG00000021699	ENSMMMG00000021704	ENSMMMG00000021716	ENSMMMG00000021790
Eurasian red squirrel	MODERN SPECIES	156	ABCB7 (ENSSVLG00005014285)	NEXMIF (ENSSVLG00005015017)	RLIM (ENSSVLG00005015096)	SLC16A2 (ENSSVLG00005015129)	ZCCHC13 (ENSSVLG00005015163)	ENSSVLG00005015182	CDX4 (ENSSVLG00005015316)	NAP1L2 (ENSSVLG00005015352)	ENSSVLG00005015384	ENSSVLG00005015416	ENSSVLG00005015435	ENSSVLG00005015457	ENSSVLG00005015556	ENSSVLG00005015655	PHKA1 (ENSSVLG00005015757) #20	HDAC8 (ENSSVLG00005016008) #22	CITED1 (ENSSVLG00005016381) #23	ENSSVLG00005016444 ##24	PIN4 (ENSSVLG00005016533) #26	ERCC6L (ENSSVLG00005016734) #25	NHSL2 (ENSSVLG00005016754) #28	RTL5 (ENSSVLG00005016947) #29	ENSSVLG00005016970 #32	ENSSVLG00005017206 #32	ENSSVLG00005017271 #32	ENSSVLG00005017338 #32	ENSSVLG00005017662 #32	ENSSVLG00005017896 #32	SERP1 (ENSSVLG00005017996)	ENSSVLG00005018019 #32	CXCR3 (ENSSVLG00005018095) #35