Hystricomorpha_a	ANCESTRAL SPECIES	51	ENSGT00390000012178.g.a.a	ENSGT00390000012030.b.a	ENSGT00940000155902	ENSGT00940000160087	ENSGT00940000163182	ENSGT00390000016333	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00390000003601.a	ENSGT00940000160311	ENSGT00950000183118.A.c.b #21	ENSGT00940000157843 #22	ENSGT00990000205127 #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837.`b #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191 #27	ENSGT01050000244848.B.a.b #29	ENSGT00940000155085.b #31	ENSGT00940000155242 #32	ENSGT00940000159429 #33	ENSGT00940000154442.sc.b #34	ENSGT00940000160693 #35	ENSGT01030000234513.B.a #36	ENSGT00940000159580 #37	ENSGT00440000037505.b
Hystricomorpha_b	ANCESTRAL SPECIES	74															ENSGT00950000183118.A.c.b #21	ENSGT00940000157843 #22	ENSGT00990000205127 #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837.`b #25	ENSGT00510000047029 #26	ENSGT00940000163191 #27	ENSGT00950000182963.b.b #28	ENSGT01050000244848.B.a.b #29	ENSGT00940000155085.b #31	ENSGT00940000155242 #32	ENSGT00940000159429 #33	ENSGT00940000154442.sc.b #34	ENSGT00940000160693 #35	ENSGT01030000234513.B.a #36	ENSGT00940000159580 #37	ENSGT00440000037505.b
Long-tailed chinchilla	MODERN SPECIES	182															PHKA1 (ENSCLAG00000013584) #21	HDAC8 (ENSCLAG00000015755) #22	ENSCLAG00000015363 #23	ENSCLAG00000015266 #24	ENSCLAG00000015218 #25	PIN4 (ENSCLAG00000014880) #26	RTL5 (ENSCLAG00000014510) #27	NHSL2 (ENSCLAG00000011242) #28	CXCR3 (ENSCLAG00000010111) #29	ENSCLAG00000009475 #30	OGT (ENSCLAG00000006474) #31	ENSCLAG00000004940 #32	ITGB1BP2 (ENSCLAG00000003431) #33	NONO (ENSCLAG00000003642) #34	ZMYM3 (ENSCLAG00000003585) #35	GJB1 (ENSCLAG00000004895) #36	NLGN3 (ENSCLAG00000006482) #37
Degu	MODERN SPECIES	321														PHKA1 (ENSODEG00000002058) #21	ENSODEG00000002103	HDAC8 (ENSODEG00000002146) #22	ENSODEG00000002191	ENSODEG00000002215	ENSODEG00000002252 #23	RPS4X (ENSODEG00000002268) ##24	ERCC6L (ENSODEG00000002328) #25	ENSODEG00000002336 #26	NHSL2 (ENSODEG00000002360) #28	RTL5 (ENSODEG00000002380) #27	CXCR3 (ENSODEG00000002401) #29	OGT (ENSODEG00000002656) #31	ENSODEG00000002771 #32	ITGB1BP2 (ENSODEG00000002957) #33	ENSODEG00000002994 ##34	ENSODEG00000018894	ZMYM3 (ENSODEG00000003059) #35
Guinea pig	MODERN SPECIES	26	ENSCPOG00000036844	MAGT1 (ENSCPOG00000027554)	ATRX (ENSCPOG00000007873)	FGF16 (ENSCPOG00000007870)	MAGEE1 (ENSCPOG00000039465)	PBDC1 (ENSCPOG00000006794)	ZDHHC15 (ENSCPOG00000006742)	UPRT (ENSCPOG00000035232)	ABCB7 (ENSCPOG00000010708)	NEXMIF (ENSCPOG00000014831)	RLIM (ENSCPOG00000031438)	SLC16A2 (ENSCPOG00000000465)	CHIC1 (ENSCPOG00000035632)	ENSCPOG00000009525	PHKA1 (ENSCPOG00000005675) #21	HDAC8 (ENSCPOG00000005671) #22	ENSCPOG00000003816 #23	ENSCPOG00000006337 #24	ERCC6L (ENSCPOG00000011407) #25	PIN4 (ENSCPOG00000031758) #26	NHSL2 (ENSCPOG00000005172) #28	RTL5 (ENSCPOG00000021990) #27	CXCR3 (ENSCPOG00000008446) #29	OGT (ENSCPOG00000014682) #31	ENSCPOG00000035003 #32	ENSCPOG00000039595	ITGB1BP2 (ENSCPOG00000038156) #33	ENSCPOG00000010263 #34	ZMYM3 (ENSCPOG00000010256) #35	NLGN3 (ENSCPOG00000006193) #37	MED12 (ENSCPOG00000000903)