Muroidea_A ANCESTRAL SPECIES 7 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00940000156489.m #14 ENSGT00900000143537 #15 ENSGT00940000163063 #18 ENSGT00410000029400 #13 ENSGT00940000168699 #12 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #30 ENSGT00390000015252.c.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 Murinae ANCESTRAL SPECIES 14 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00940000160311 ENSGT00520000059967 #16 ENSGT00940000163063 #18 ENSGT00410000029400 #13 ENSGT00940000168699 #12 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #30 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 ENSGT01030000234513.B.a Mus ANCESTRAL SPECIES 9 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00940000156489.m #14 ENSGT00520000059967 #16 ENSGT00940000163063 #18 ENSGT00410000029400 #13 ENSGT00940000168699 #12 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #30 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 ENSGT01030000234513.B.a Mus_A ANCESTRAL SPECIES 15 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00900000143788 ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00940000156489.m #14 ENSGT00520000059967 #16 ENSGT00940000163063 #18 ENSGT00410000029400 #13 ENSGT00940000168699 #12 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #30 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 ENSGT01030000234513.B.a Mus_B ANCESTRAL SPECIES 14 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00900000143788 ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00940000156489.m #14 ENSGT00520000059967 #16 ENSGT00940000163063 #18 ENSGT00410000029400 #13 ENSGT00940000168699 #12 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #30 ENSGT00390000015252.c.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 Mouse MODERN SPECIES 37 Gm26992 (ENSMUSG00000098078) #7 Tsx (ENSMUSG00000031329) #8 Chic1 (ENSMUSG00000031327) #9 Cdx4 (ENSMUSG00000031326) #10 Nap1l2 (ENSMUSG00000082229) #11 1700018G05Rik (ENSMUSG00000109745) #12 1700011M02Rik (ENSMUSG00000079476) #13 Dmrtc1a (ENSMUSG00000031323) #14 1700031F05Rik (ENSMUSG00000032894) #15 Dmrtc1c2 (ENSMUSG00000067561) #16 Dmrtc1c1 (ENSMUSG00000067562) #17 Dmrtc1b (ENSMUSG00000073027) #18 Gm9112 (ENSMUSG00000079479) #19 Gm3880 (ENSMUSG00000081443) #20 Phka1 (ENSMUSG00000034055) #21 Hdac8 (ENSMUSG00000067567) #22 Cited1 (ENSMUSG00000051159) #23 Rps4x (ENSMUSG00000031320) #24 Ercc6l (ENSMUSG00000051220) #25 Pin4 (ENSMUSG00000079480) #26 Rtl5 (ENSMUSG00000049191) #27 Nhsl2 (ENSMUSG00000079481) #28 Gm3858 (ENSMUSG00000118638) #29 8030474K03Rik (ENSMUSG00000046774) #30 Gm4779 (ENSMUSG00000045010) #31 Cxcr3 (ENSMUSG00000050232) #32 Ogt (ENSMUSG00000034160) #33 Taf1 (ENSMUSG00000031314) #34 Itgb1bp2 (ENSMUSG00000031312) #35 Nono (ENSMUSG00000031311) #36 Zmym3 (ENSMUSG00000031310) #37 Mus_C ANCESTRAL SPECIES 22 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00900000143788 ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00410000029400 #13 ENSGT00940000156489.m #14 ENSGT00520000059967 #16 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00940000163191 #27 ENSGT00950000182963.b.b #28 ENSGT00390000015252.d #29 ENSGT00390000015252.c.a.a #30 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 ENSGT01030000234513.B.a spretus MODERN SPECIES 19 Abcb7 (MGP_SPRETEiJ_G0034479) Nexmif (MGP_SPRETEiJ_G0034478) Rlim (MGP_SPRETEiJ_G0034477) Slc16a2 (MGP_SPRETEiJ_G0034476) Zcchc13 (MGP_SPRETEiJ_G0034475) MGP_SPRETEiJ_G0034474 Tsx (MGP_SPRETEiJ_G0034473) #8 Chic1 (MGP_SPRETEiJ_G0034472) #9 Cdx4 (MGP_SPRETEiJ_G0034471) #10 Nap1l2 (MGP_SPRETEiJ_G0034470) #11 MGP_SPRETEiJ_G0034469 #13 Dmrtc1a (MGP_SPRETEiJ_G0034468) #14 MGP_SPRETEiJ_G0034467 #16 MGP_SPRETEiJ_G0034466 #16 Phka1 (MGP_SPRETEiJ_G0034465) #21 Hdac8 (MGP_SPRETEiJ_G0034464) #22 Cited1 (MGP_SPRETEiJ_G0034463) #23 MGP_SPRETEiJ_G0034462 ##24 Ercc6l (MGP_SPRETEiJ_G0034461) #25 Pin4 (MGP_SPRETEiJ_G0034460) #26 Rtl5 (MGP_SPRETEiJ_G0034459) #27 Nhsl2 (MGP_SPRETEiJ_G0034458) #28 8030474K03Rik (MGP_SPRETEiJ_G0034457) #30 Cxcr3 (MGP_SPRETEiJ_G0034456) #32 Ogt (MGP_SPRETEiJ_G0034455) #33 Taf1 (MGP_SPRETEiJ_G0034454) #34 Itgb1bp2 (MGP_SPRETEiJ_G0034453) #35 Zmym3 (MGP_SPRETEiJ_G0034451) #37 Gjb1 (MGP_SPRETEiJ_G0034450) Nlgn3 (MGP_SPRETEiJ_G0034449) Med12 (MGP_SPRETEiJ_G0034448) Steppe mouse MODERN SPECIES 3385 ENSMSIG00000008475 #21 Hdac8 (ENSMSIG00000024883) #22 Ryukyu mouse MODERN SPECIES 19 Uprt (MGP_CAROLIEiJ_G0033316) Abcb7 (MGP_CAROLIEiJ_G0033315) Nexmif (MGP_CAROLIEiJ_G0033314) Slc16a2 (MGP_CAROLIEiJ_G0033312) Zcchc13 (MGP_CAROLIEiJ_G0033311) MGP_CAROLIEiJ_G0033310 Tsx (MGP_CAROLIEiJ_G0033309) #8 Chic1 (MGP_CAROLIEiJ_G0033308) #9 Cdx4 (MGP_CAROLIEiJ_G0033307) #10 Nap1l2 (MGP_CAROLIEiJ_G0033306) #11 MGP_CAROLIEiJ_G0033305 #13 Dmrtc1a (MGP_CAROLIEiJ_G0033304) #14 MGP_CAROLIEiJ_G0033303 #16 MGP_CAROLIEiJ_G0033302 Phka1 (MGP_CAROLIEiJ_G0033301) #21 Hdac8 (MGP_CAROLIEiJ_G0033300) #22 Cited1 (MGP_CAROLIEiJ_G0033299) #23 Rps4x (MGP_CAROLIEiJ_G0033298) #24 Ercc6l (MGP_CAROLIEiJ_G0033297) #25 MGP_CAROLIEiJ_G0033296 #26 Rtl5 (MGP_CAROLIEiJ_G0033295) #27 Nhsl2 (MGP_CAROLIEiJ_G0033294) #28 MGP_CAROLIEiJ_G0033293 #30 Cxcr3 (MGP_CAROLIEiJ_G0033292) #32 Ogt (MGP_CAROLIEiJ_G0033291) #33 Taf1 (MGP_CAROLIEiJ_G0033290) #34 Itgb1bp2 (MGP_CAROLIEiJ_G0033289) #35 MGP_CAROLIEiJ_G0033288 #36 Zmym3 (MGP_CAROLIEiJ_G0033287) #37 Gjb1 (MGP_CAROLIEiJ_G0033286) Nlgn3 (MGP_CAROLIEiJ_G0033285) Shrew mouse MODERN SPECIES 23 Uprt (MGP_PahariEiJ_G0031853) Abcb7 (MGP_PahariEiJ_G0031852) Nexmif (MGP_PahariEiJ_G0031851) Rlim (MGP_PahariEiJ_G0031850) Slc16a2 (MGP_PahariEiJ_G0031849) Zcchc13 (MGP_PahariEiJ_G0031848) Tsx (MGP_PahariEiJ_G0031847) #8 Chic1 (MGP_PahariEiJ_G0031846) #9 Cdx4 (MGP_PahariEiJ_G0031845) #10 Nap1l2 (MGP_PahariEiJ_G0031844) #11 Dmrtc1a (MGP_PahariEiJ_G0031843) #14 MGP_PahariEiJ_G0031842 #16 MGP_PahariEiJ_G0031841 #16 MGP_PahariEiJ_G0031840 #18 Phka1 (MGP_PahariEiJ_G0031839) #21 Hdac8 (MGP_PahariEiJ_G0031838) #22 Cited1 (MGP_PahariEiJ_G0031837) #23 Rps4x (MGP_PahariEiJ_G0031836) #24 Ercc6l (MGP_PahariEiJ_G0031835) #25 Pin4 (MGP_PahariEiJ_G0031834) #26 Rtl5 (MGP_PahariEiJ_G0031833) #27 Nhsl2 (MGP_PahariEiJ_G0031832) #28 MGP_PahariEiJ_G0031831 #30 Cxcr3 (MGP_PahariEiJ_G0031830) #32 Ogt (MGP_PahariEiJ_G0031829) #33 MGP_PahariEiJ_G0031828 #34 Itgb1bp2 (MGP_PahariEiJ_G0031827) #35 Nono (MGP_PahariEiJ_G0031826) #36 Zmym3 (MGP_PahariEiJ_G0031825) #37 Gjb1 (MGP_PahariEiJ_G0031824) Nlgn3 (MGP_PahariEiJ_G0031823) Rat MODERN SPECIES 46 Cdx4 (ENSRNOG00000002974) #10 LOC100361671 (ENSRNOG00000003008) RGD1562521 (ENSRNOG00000003009) AABR07039336.2 (ENSRNOG00000003025) #11 AABR07039334.1 (ENSRNOG00000022267) ENSRNOG00000064026 #12 Fam236d (ENSRNOG00000069062) #13 Dmrtc1b (ENSRNOG00000022286) #18 Dmrtc1c1 (ENSRNOG00000068646) #16 LOC120099304 (ENSRNOG00000069736) #16 ENSRNOG00000068588 #15 ENSRNOG00000065493 #12 AABR07039229.2 (ENSRNOG00000048295) #14 LOC679960 (ENSRNOG00000003062) Phka1 (ENSRNOG00000003063) #21 Hdac8 (ENSRNOG00000003122) #22 Cited1 (ENSRNOG00000003189) #23 Rps4x (ENSRNOG00000003201) ##24 Ercc6l (ENSRNOG00000003208) #25 Pin4 (ENSRNOG00000050051) #26 Rtl5 (ENSRNOG00000045779) #27 Nhsl2 (ENSRNOG00000037951) #28 LOC102555994 (ENSRNOG00000060462) #29 Cxhxorf49 (ENSRNOG00000025211) #31 LOC102553785 (ENSRNOG00000025200) #30 Cxcr3 (ENSRNOG00000003305) #32 LOC102548506 (ENSRNOG00000066689) Ogt (ENSRNOG00000003359) #33 Taf1 (ENSRNOG00000002565) #34 Itgb1bp2 (ENSRNOG00000003596) #35 Nono (ENSRNOG00000003689) #36 Cricetidae ANCESTRAL SPECIES 8 ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00950000183041.A.f ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00940000156489.m #14 ENSGT00900000143537 #15 ENSGT00940000163063 #18 ENSGT00410000029400 #13 ENSGT00940000168699 #12 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.c.a.a #30 ENSGT00390000015252.c.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 ENSGT01030000234513.B.a Cricetinae ANCESTRAL SPECIES 17 ENSGT00940000158214 ENSGT01020000230412.D ENSGT00940000156281 ENSGT00940000159746 ENSGT00940000155753 ENSGT00940000159450 ENSGT00520000061207 #8 ENSGT00390000003601.a #9 ENSGT00940000162554 #10 ENSGT00940000163372 #11 ENSGT00940000160311 ENSGT00940000156489.m #14 ENSGT00940000168699 #12 ENSGT00940000163063 #18 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.b.b ##24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 ENSGT01030000234513.B.a ENSGT00940000159580 ENSGT00440000037505.b Golden Hamster MODERN SPECIES 727 Dmrtc1b (ENSMAUG00000010338) #18 ENSMAUG00000008738 #21 Hdac8 (ENSMAUG00000006310) #22 Cited1 (ENSMAUG00000020556) #23 Rps4x (ENSMAUG00000013223) #24 Pin4 (ENSMAUG00000015251) #26 Rtl5 (ENSMAUG00000009321) #27 Nhsl2 (ENSMAUG00000013469) #28 ENSMAUG00000007111 Cxcr3 (ENSMAUG00000006658) #32 ENSMAUG00000015275 #33 ENSMAUG00000010446 #33 Taf1 (ENSMAUG00000018664) #34 Itgb1bp2 (ENSMAUG00000007311) #35 Nono (ENSMAUG00000016243) #36 Zmym3 (ENSMAUG00000015148) #37 Gjb1 (ENSMAUG00000011973) Nlgn3 (ENSMAUG00000004367) Chinese hamster chok1gshd MODERN SPECIES 16 Zcchc13 (ENSCGRG00001009786) ENSCGRG00001004584 Tsx (ENSCGRG00001005790) #8 Chic1 (ENSCGRG00001011931) #9 ENSCGRG00001012274 Cdx4 (ENSCGRG00001020397) #10 ENSCGRG00001012385 ENSCGRG00001007129 ENSCGRG00001015812 Eif2s3y (ENSCGRG00001016219) Nap1l2 (ENSCGRG00001003632) #11 ENSCGRG00001023387 Dmrtc1a (ENSCGRG00001018624) #14 ENSCGRG00001024855 #12 Phka1 (ENSCGRG00001020129) #21 Hdac8 (ENSCGRG00001022455) #22 Cited1 (ENSCGRG00001022122) #23 Rps4x (ENSCGRG00001018159) ##24 Ercc6l (ENSCGRG00001016668) #25 Pin4 (ENSCGRG00001023057) #26 Nhsl2 (ENSCGRG00001018292) #28 Rtl5 (ENSCGRG00001010452) #27 ENSCGRG00001012656 Cxcr3 (ENSCGRG00001013701) #32 ENSCGRG00001014167 Ogt (ENSCGRG00001011594) #33 8030474K03Rik (ENSCGRG00001022034) #30 Gm4779 (ENSCGRG00001010077) #31 Cricetidae_B ANCESTRAL SPECIES 54 ENSGT00940000156489.m #14 ENSGT00900000143537 #15 ENSGT00940000163063 #18 ENSGT00410000029400 #13 ENSGT00940000168699 #12 ENSGT00950000183118.A.c.b #21 ENSGT00940000157843 #22 ENSGT00530000063624.B #23 ENSGT00390000005569.x.a.b.a #24 ENSGT00940000156837 #25 ENSGT00510000047029 #26 ENSGT00950000182963.b.b #28 ENSGT00940000163191 #27 ENSGT00390000015252.c.a.a #30 ENSGT00390000015252.c.a.b #31 ENSGT01050000244848.B.a.b #32 ENSGT00940000155085.b #33 ENSGT00940000155242 #34 ENSGT00940000159429 #35 ENSGT00940000154442.sc.b #36 ENSGT00940000160693 #37 ENSGT01030000234513.B.a Prairie vole MODERN SPECIES 360 ENSMOCG00000007642 Atp11c (ENSMOCG00000002605) ENSMOCG00000012975 Gm7073 (ENSMOCG00000018667) Sox3 (ENSMOCG00000009062) ENSMOCG00000013955 Ldoc1 (ENSMOCG00000008324) ENSMOCG00000006967 Magec2 (ENSMOCG00000016294) ENSMOCG00000017215 Slitrk4 (ENSMOCG00000008180) ENSMOCG00000014952 Ctag2 (ENSMOCG00000017014) ENSMOCG00000015005 Phka1 (ENSMOCG00000013482) #21 Hdac8 (ENSMOCG00000019902) #22 Cited1 (ENSMOCG00000013938) #23 ENSMOCG00000014451 #24 Ercc6l (ENSMOCG00000021344) #25 ENSMOCG00000000929 #26 Nhsl2 (ENSMOCG00000002880) #28 Rtl5 (ENSMOCG00000000142) #27 Cxcr3 (ENSMOCG00000007041) #32 Ogt (ENSMOCG00000013563) #33 Taf1 (ENSMOCG00000001297) #34 Itgb1bp2 (ENSMOCG00000021266) #35 ENSMOCG00000005532 ##36 Zmym3 (ENSMOCG00000007682) #37 Gjb1 (ENSMOCG00000009230) Nlgn3 (ENSMOCG00000015847) Med12 (ENSMOCG00000013807) Northern American deer mouse MODERN SPECIES 475 Zcchc13 (ENSPEMG00000030313) ENSPEMG00000028568 Tsx (ENSPEMG00000008527) #8 Chic1 (ENSPEMG00000030446) #9 Cdx4 (ENSPEMG00000022957) #10 ENSPEMG00000031031 ENSPEMG00000028389 ENSPEMG00000029441 ENSPEMG00000026745 Dmrtc1a (ENSPEMG00000009870) #14 1700031F05Rik (ENSPEMG00000019008) #15 Dmrtc1b (ENSPEMG00000013412) #18 ENSPEMG00000016284 #13 ENSPEMG00000014842 #12 Phka1 (ENSPEMG00000007806) #21 Hdac8 (ENSPEMG00000013611) #22 ENSPEMG00000029011 Cited1 (ENSPEMG00000004332) #23 ENSPEMG00000016482 #24 Ercc6l (ENSPEMG00000007920) #25 Pin4 (ENSPEMG00000009326) #26 Nhsl2 (ENSPEMG00000006950) #28 Rtl5 (ENSPEMG00000028195) #27 8030474K03Rik (ENSPEMG00000028164) #30 Gm4779 (ENSPEMG00000015753) #31 Cxcr3 (ENSPEMG00000018113) #32 Ogt (ENSPEMG00000012399) #33 Taf1 (ENSPEMG00000011524) #34 ENSPEMG00000029064 Itgb1bp2 (ENSPEMG00000004183) #35 Nono (ENSPEMG00000011150) #36