Pecora	ANCESTRAL SPECIES	27	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000163372	ENSGT00940000163063	ENSGT00410000029400	ENSGT00940000160311 #19	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00940000163191.a #27	ENSGT00950000182963.b.b #28	ENSGT00940000163191.b.a ##27	ENSGT00390000015252	ENSGT01050000244848.B.a.b #29	ENSGT00440000040163	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35
Percora_a	ANCESTRAL SPECIES	22	ENSGT00390000016333	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00410000029400	ENSGT00940000163063	ENSGT00940000160311 #19	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00940000163191.a #27	ENSGT00950000182963.b.b #28	ENSGT00940000163191.b.a ##27	ENSGT00390000015252	ENSGT01050000244848.B.a.b #29	ENSGT00440000040163	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35
Bovidae	ANCESTRAL SPECIES	23	ENSGT00390000016333	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000163063	ENSGT00940000160311 #19	ENSGT00950000183118.A.c.b #20	ENSGT00960000190675 #21	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00940000163191.a #27	ENSGT00950000182963.b.b #28	ENSGT00940000163191.b.a ##27	ENSGT00390000015252	ENSGT01050000244848.B.a.b #29	ENSGT00440000040163	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35
Caprinae	ANCESTRAL SPECIES	50											ENSGT00940000163372	ENSGT00940000163063	ENSGT00940000160311 #19	ENSGT00950000183118.A.c.b #20	ENSGT00960000190675 #21	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191.a #27	ENSGT00390000015252	ENSGT01050000244848.B.a.b #29	ENSGT00440000040163	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35	ENSGT00940000160693 #36
Rambouillet Sheep	MODERN SPECIES	205	ENSOARG00020016579 #7	ENSOARG00020016548 #8	GPR174 (ENSOARG00020016533) #9	ITM2A (ENSOARG00020016499) #10	TBX22 (ENSOARG00020016413) #11	TENT5D (ENSOARG00020016386) #12	BRWD3 (ENSOARG00020015617) #13	HMGN5 (ENSOARG00020015488) #14	ENSOARG00020025731 #15	GLS (ENSOARG00020025702) #16	STAT1 (ENSOARG00020025634) #17	STAT4 (ENSOARG00020025579) #18	ENSOARG00020025556 #19	PHKA1 (ENSOARG00020025431) #20	ENSOARG00020025389 #21	HDAC8 (ENSOARG00020025320) #22	CITED1 (ENSOARG00020025298) #23	ENSOARG00020025291 #24	ERCC6L (ENSOARG00020025281) #25	PIN4 (ENSOARG00020025228) #26	RTL5 (ENSOARG00020025206) #27	NHSL2 (ENSOARG00020025157) #28	CXCR3 (ENSOARG00020025135) #29	OGT (ENSOARG00020025079) #30	ENSOARG00020024804 #31	ENSOARG00020024762 #32	ENSOARG00020024748 #33	ITGB1BP2 (ENSOARG00020024686) #34	NONO (ENSOARG00020024655) #35	ZMYM3 (ENSOARG00020024506) #36	GJB1 (ENSOARG00020024479) #37
Goat	DUPLICATION
Goat	MODERN SPECIES	29	ENSCHIG00000007957 #32	ENSCHIG00000020141 #31	OGT (ENSCHIG00000001994) #30	ENSCHIG00000003495	CXCR3 (ENSCHIG00000014964) #29	ENSCHIG00000020497	ENSCHIG00000015330	FGF16 (ENSCHIG00000011577)	RTL5 (ENSCHIG00000009403) #27	NHSL2 (ENSCHIG00000018552) #28	PIN4 (ENSCHIG00000014397) #26	ERCC6L (ENSCHIG00000009967) #25	ENSCHIG00000023292 ##24	CITED1 (ENSCHIG00000019258) #23	PHKA1 (ENSCHIG00000021783) #20	ENSCHIG00000019337 #22	NAP1L2 (ENSCHIG00000016151)	ENSCHIG00000020667	ENSCHIG00000006283 #19	CHIC1 (ENSCHIG00000016513)	ENSCHIG00000001275	ENSCHIG00000021839	ZCCHC13 (ENSCHIG00000019132)	SLC16A2 (ENSCHIG00000015992)	RLIM (ENSCHIG00000019610)	NEXMIF (ENSCHIG00000014641)	ABCB7 (ENSCHIG00000005807)	ZDHHC15 (ENSCHIG00000012700)	MAGEE2 (ENSCHIG00000007901)	HDX (ENSCHIG00000008366)	ENSCHIG00000012493
Goat	MODERN SPECIES	113																ENSCHIG00000000457 #22
Bovinae	ANCESTRAL SPECIES	38	ENSGT00940000160087	ENSGT00390000016333	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000160311.`c #19	ENSGT00950000183118.A.c.b #20	ENSGT00960000190675 #21	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00940000163191.a #27	ENSGT00950000182963.b.b #28	ENSGT00940000163191.b.a ##27	ENSGT00390000015252	ENSGT01050000244848.B.a.b #29	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35	ENSGT00940000160693 #36
Bos	ANCESTRAL SPECIES	30	ENSGT00940000160087	ENSGT00390000016333	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000160311.`c #19	ENSGT00950000183118.A.c.b #20	ENSGT00960000190675 #21	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00940000163191.a #27	ENSGT00950000182963.b.b #28	ENSGT00940000163191.b.b ##27	ENSGT01050000244848.B.a.b #29	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35	ENSGT00940000160693 #36	ENSGT01030000234513.B.a #37
Bos_a	ANCESTRAL SPECIES	19	ENSGT00940000160087	ENSGT00390000016333	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000163063	ENSGT00950000183118.A.c.b #20	ENSGT00960000190675 #21	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00950000182963.b.b #28	ENSGT00940000163191.a #27	ENSGT00940000163191.b.a ##27	ENSGT00390000015252.s.a.a	ENSGT01050000244848.B.a.b #29	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35	ENSGT00940000160693 #36	ENSGT01030000234513.B.a #37
Domestic yak	MODERN SPECIES	69	ZDHHC15 (ENSBGRG00000023027)	ENSBGRG00000023226	UPRT (ENSBGRG00000023239)	ABCB7 (ENSBGRG00000023373)	ENSBGRG00000023925	NEXMIF (ENSBGRG00000023961)	RLIM (ENSBGRG00000023991)	SLC16A2 (ENSBGRG00000024018)	ZCCHC13 (ENSBGRG00000024056)	ENSBGRG00000024150	ENSBGRG00000024158	CHIC1 (ENSBGRG00000024180)	CDX4 (ENSBGRG00000024264)	ENSBGRG00000024296	PHKA1 (ENSBGRG00000024454) #20	HDAC8 (ENSBGRG00000025035) #22	CITED1 (ENSBGRG00000025098) #23	ENSBGRG00000025116 ##24	PIN4 (ENSBGRG00000025136) #26	ERCC6L (ENSBGRG00000025193) #25	NHSL2 (ENSBGRG00000025208) #28	ENSBGRG00000025269 ##27	ENSBGRG00000025287 ##27	ENSBGRG00000025302	ENSBGRG00000025312	CXCR3 (ENSBGRG00000025320) #29	OGT (ENSBGRG00000025338) #30	ENSBGRG00000025461 #31	ENSBGRG00000025796 #32	ITGB1BP2 (ENSBGRG00000025809) #34	NONO (ENSBGRG00000025854) #35
Wild yak	MODERN SPECIES	1111														PHKA1 (ENSBMUG00000007877) #20	ENSBMUG00000007798 #21	HDAC8 (ENSBMUG00000007782) #22	SEMA3D (ENSBMUG00000007745)	SEMA3A (ENSBMUG00000007717)
Bos_b	ANCESTRAL SPECIES	12	ENSGT00940000160087	ENSGT00940000163243	ENSGT00390000016333	ENSGT00940000163487	ENSGT00940000158214	ENSGT01020000230412.D	ENSGT00940000156281	ENSGT00940000159746	ENSGT00940000155753	ENSGT00940000159450	ENSGT00950000183041.A.f	ENSGT00390000003601.a	ENSGT00940000162554	ENSGT00940000160311.`c #19	ENSGT00950000183118.A.c.b #20	ENSGT00940000157843 #22	ENSGT00530000063624.B #23	ENSGT00390000005569.x.a.b.a #24	ENSGT00940000156837 #25	ENSGT00510000047029 #26	ENSGT00940000163191.a #27	ENSGT00950000182963.b.b #28	ENSGT00940000163191.b.a ##27	ENSGT01050000244848.B.a.b #29	ENSGT00940000155085.b #30	ENSGT00940000155242 #31	ENSGT00940000163331 #32	ENSGT00940000159429 #34	ENSGT00940000154442 #35	ENSGT00940000160693 #36	ENSGT01030000234513.B.a #37
Cow	MODERN SPECIES	177	ABCB7 (ENSBTAG00000011028)	NEXMIF (ENSBTAG00000000300)	RLIM (ENSBTAG00000015630)	ENSBTAG00000051929	SLC16A2 (ENSBTAG00000002585)	ZCCHC13 (ENSBTAG00000032003)	CHIC1 (ENSBTAG00000020826)	CDX4 (ENSBTAG00000001726)	MGC140080 (ENSBTAG00000050059)	ENSBTAG00000053104	ENSBTAG00000052491 #19	ENSBTAG00000051474	ENSBTAG00000050902 #19	ENSBTAG00000051767 #20	PHKA1 (ENSBTAG00000015848) #20	HDAC8 (ENSBTAG00000046092) #22	ENSBTAG00000052692 #21	CITED1 (ENSBTAG00000045925) #23	RPS4X (ENSBTAG00000018800) #24	ERCC6L (ENSBTAG00000005607) #25	PIN4 (ENSBTAG00000047376) #26	NHSL2 (ENSBTAG00000045565) #28	RTL5 (ENSBTAG00000047545) ##27	ENSBTAG00000049525	CXCR3 (ENSBTAG00000014798) #29	OGT (ENSBTAG00000000902) #30	ENSBTAG00000006878 #31	ITGB1BP2 (ENSBTAG00000012163) #34	NONO (ENSBTAG00000012152) #35	ZMYM3 (ENSBTAG00000008492) #36	GJB1 (ENSBTAG00000020512) #37
Hybrid Bos Indicus	MODERN SPECIES	315	ENSBIXG00005025206	ABCB7 (ENSBIXG00005004343)	NEXMIF (ENSBIXG00005025570)	RLIM (ENSBIXG00005025624)	SLC16A2 (ENSBIXG00005025654)	ENSBIXG00005004383	ENSBIXG00005025707	ENSBIXG00005025786	ENSBIXG00005025818	CHIC1 (ENSBIXG00005025937)	CDX4 (ENSBIXG00005025966)	ENSBIXG00005025997	ENSBIXG00005004436 #19	ENSBIXG00005026017 #19	PHKA1 (ENSBIXG00005006185) #20	HDAC8 (ENSBIXG00005026224) #22	CITED1 (ENSBIXG00005026354) #23	ENSBIXG00005026386 #24	ERCC6L (ENSBIXG00005026427) #25	PIN4 (ENSBIXG00005026438) #26	RTL5 (ENSBIXG00005026448) #27	NHSL2 (ENSBIXG00005007203) #28	ENSBIXG00005026633	ENSBIXG00005026656	ENSBIXG00005026670	ENSBIXG00005004560	ENSBIXG00005026702	ENSBIXG00005004565 ##24	CXCR3 (ENSBIXG00005026720) #29	OGT (ENSBIXG00005026815) #30	ENSBIXG00005027194 #31
Siberian musk deer	MODERN SPECIES	9	UPRT (ENSMMSG00000000982)	ABCB7 (ENSMMSG00000001025)	ENSMMSG00000001187	NEXMIF (ENSMMSG00000001198)	RLIM (ENSMMSG00000001223)	SLC16A2 (ENSMMSG00000001236)	ZCCHC13 (ENSMMSG00000001254)	ENSMMSG00000001290	CHIC1 (ENSMMSG00000001301)	CDX4 (ENSMMSG00000001319)	ENSMMSG00000001340	ENSMMSG00000001364	ENSMMSG00000001383	ENSMMSG00000001396 #19	PHKA1 (ENSMMSG00000001414) #20	HDAC8 (ENSMMSG00000001581) #22	CITED1 (ENSMMSG00000001777) #23	ENSMMSG00000001800 #24	ENSMMSG00000001833 #26	ERCC6L (ENSMMSG00000001868) #25	NHSL2 (ENSMMSG00000001888) #28	RTL5 (ENSMMSG00000001915) #27
Yarkand deer	MODERN SPECIES	1323	ZDHHC15 (ENSCHYG00000011470)	UPRT (ENSCHYG00000011786)	ABCB7 (ENSCHYG00000012079)	ENSCHYG00000013033	NEXMIF (ENSCHYG00000013048)	RLIM (ENSCHYG00000013107)	SLC16A2 (ENSCHYG00000013135)	ENSCHYG00000013216	ENSCHYG00000013357	CHIC1 (ENSCHYG00000013382)	CDX4 (ENSCHYG00000013503)	NAP1L2 (ENSCHYG00000013551)	ENSCHYG00000013611 #19	PHKA1 (ENSCHYG00000014051) #20	ENSCHYG00000021251	HDAC8 (ENSCHYG00000021302) #22	CITED1 (ENSCHYG00000021899) #23	ENSCHYG00000022005 #24	ENSCHYG00000022048 #26	ERCC6L (ENSCHYG00000022233) #25	NHSL2 (ENSCHYG00000022300) #28	RTL5 (ENSCHYG00000022577) ##27	ENSCHYG00000022594	CXCR3 (ENSCHYG00000022631) #29	ENSCHYG00000022668	OGT (ENSCHYG00000022764) #30	ENSCHYG00000022934 #31	ENSCHYG00000023878 #32	ITGB1BP2 (ENSCHYG00000023933) #34	ENSCHYG00000024097	NONO (ENSCHYG00000024105) #35