Euarchontoglires_A ANCESTRAL SPECIES 2 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000185720 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000163266 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 Glires ANCESTRAL SPECIES 2 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000185720 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Rodentia ANCESTRAL SPECIES 2 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000185720 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Rodentia_A ANCESTRAL SPECIES 5 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000185720 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Hystricomorpha ANCESTRAL SPECIES 60 ENSGT00940000154826 #8 ENSGT00390000011821.b #9 ENSGT00950000182836.b.b.b.a #10 ENSGT00390000003873 #11 ENSGT00550000074981 #12 ENSGT00390000003706.a.a #13 ENSGT00940000161590 ENSGT00940000162228 #14 ENSGT00940000161104 #15 ENSGT00940000159292 #16 ENSGT00390000018807 #17 ENSGT00940000156404 #18 ENSGT00940000154360.A.b #19 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.n.b #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Hystricomorpha_a ANCESTRAL SPECIES 37 ENSGT00940000154826 #8 ENSGT00390000011821.b #9 ENSGT00950000182836.b.b.b.a #10 ENSGT00390000003873 #11 ENSGT00550000074981 #12 ENSGT00390000003706.a.a #13 ENSGT00940000161590 ENSGT00940000162228 #14 ENSGT00940000161104 #15 ENSGT00940000159292 #16 ENSGT00390000018807 #17 ENSGT00940000156404 #18 ENSGT00940000154360.A.b #19 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.n.b #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Guinea pig MODERN SPECIES 90 PDXK (ENSCPOG00000039719) #7 CSTB (ENSCPOG00000031855) #8 RRP1 (ENSCPOG00000038986) #9 AGPAT3 (ENSCPOG00000032718) #10 TRAPPC10 (ENSCPOG00000011117) #11 PWP2 (ENSCPOG00000023616) #12 GATD3 (ENSCPOG00000011419) #13 DNMT3L (ENSCPOG00000004070) #14 AIRE (ENSCPOG00000019868) #15 PFKL (ENSCPOG00000019438) #16 CFAP410 (ENSCPOG00000009611) #17 TRPM2 (ENSCPOG00000023512) #18 LRRC3 (ENSCPOG00000030436) #19 PCP4 (ENSCPOG00000039173) #20 DSCAM (ENSCPOG00000005367) #21 BACE2 (ENSCPOG00000007403) #22 ENSCPOG00000025373 #23 ENSCPOG00000013108 #24 ENSCPOG00000021489 #25 ENSCPOG00000007052 #26 RIPK4 (ENSCPOG00000022900) #27 PRDM15 (ENSCPOG00000023446) #28 C2CD2 (ENSCPOG00000002808) #29 ZBTB21 (ENSCPOG00000019792) #30 UMODL1 (ENSCPOG00000023566) #31 ABCG1 (ENSCPOG00000015194) #32 ENSCPOG00000006226 #33 TFF2 (ENSCPOG00000012065) #34 TMPRSS3 (ENSCPOG00000012057) #35 UBASH3A (ENSCPOG00000013429) #36 RSPH1 (ENSCPOG00000002266) #37 Hystricomorpha_b ANCESTRAL SPECIES 34 ENSGT00940000154826 #8 ENSGT00390000011821.b #9 ENSGT00950000182836.b.b.b.a #10 ENSGT00390000003873 #11 ENSGT00550000074981 #12 ENSGT00390000003706.a.a #13 ENSGT00940000161590 ENSGT00940000162228 #14 ENSGT00940000161104 #15 ENSGT00940000159292 #16 ENSGT00390000018807 #17 ENSGT00940000156404 #18 ENSGT00940000154360.A.b #19 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.n.b #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Long-tailed chinchilla MODERN SPECIES 114 PDE9A (ENSCLAG00000005531) SLC37A1 (ENSCLAG00000006046) RSPH1 (ENSCLAG00000005001) #37 UBASH3A (ENSCLAG00000005633) #36 TMPRSS3 (ENSCLAG00000006858) #35 TFF2 (ENSCLAG00000014359) #34 TFF3 (ENSCLAG00000013670) #33 ABCG1 (ENSCLAG00000013116) #32 UMODL1 (ENSCLAG00000009892) #31 ZBTB21 (ENSCLAG00000006530) #30 C2CD2 (ENSCLAG00000007896) #29 PRDM15 (ENSCLAG00000005430) #28 RIPK4 (ENSCLAG00000007447) #27 PCP4 (ENSCLAG00000012532) #20 DSCAM (ENSCLAG00000016317) #21 BACE2 (ENSCLAG00000006208) #22 ENSCLAG00000006920 #23 FAM3B (ENSCLAG00000005832) #24 TMPRSS2 (ENSCLAG00000006480) #26 LRRC3 (ENSCLAG00000006488) #19 TRPM2 (ENSCLAG00000007001) #18 CFAP410 (ENSCLAG00000005977) #17 PFKL (ENSCLAG00000006907) #16 AIRE (ENSCLAG00000004699) #15 DNMT3L (ENSCLAG00000008128) #14 ICOSLG (ENSCLAG00000004572) GATD3 (ENSCLAG00000006863) #13 PWP2 (ENSCLAG00000009503) #12 TRAPPC10 (ENSCLAG00000004935) #11 AGPAT3 (ENSCLAG00000005641) #10 RRP1 (ENSCLAG00000011639) #9 Degu MODERN SPECIES 86 PTTG1IP (ENSODEG00000013537) ENSODEG00000013838 ENSODEG00000014012 ENSODEG00000013439 TSPEAR (ENSODEG00000013818) PDXK (ENSODEG00000013386) #7 AGPAT3 (ENSODEG00000012787) #10 ENSODEG00000013648 #11 PWP2 (ENSODEG00000013073) #12 ENSODEG00000013954 #13 PFKL (ENSODEG00000014418) #16 CFAP410 (ENSODEG00000012840) #17 TRPM2 (ENSODEG00000013043) #18 LRRC3 (ENSODEG00000020091) #19 DSCAM (ENSODEG00000012858) #21 BACE2 (ENSODEG00000013570) #22 ENSODEG00000014232 #24 ENSODEG00000013917 #23 TMPRSS2 (ENSODEG00000013358) #26 RIPK4 (ENSODEG00000013779) #27 PRDM15 (ENSODEG00000013112) #28 C2CD2 (ENSODEG00000014616) #29 ZBTB21 (ENSODEG00000014325) #30 UMODL1 (ENSODEG00000012627) #31 ABCG1 (ENSODEG00000012323) #32 TFF3 (ENSODEG00000013636) #33 TFF2 (ENSODEG00000012650) #34 ENSODEG00000014901 TMPRSS3 (ENSODEG00000013031) #35 UBASH3A (ENSODEG00000013424) #36 RSPH1 (ENSODEG00000012910) #37 Naked mole-rat female MODERN SPECIES 11 RRP1 (ENSHGLG00000050109) #9 AGPAT3 (ENSHGLG00000048529) #10 TRAPPC10 (ENSHGLG00000013176) #11 PWP2 (ENSHGLG00000017401) #12 ENSHGLG00000018104 #13 ENSHGLG00000013877 ENSHGLG00000009448 #14 AIRE (ENSHGLG00000016716) #15 PFKL (ENSHGLG00000017234) #16 ENSHGLG00000016027 #17 TRPM2 (ENSHGLG00000018785) #18 ENSHGLG00000042683 #19 PCP4 (ENSHGLG00000043480) #20 ENSHGLG00000005193 #21 ENSHGLG00000008616 ENSHGLG00000006993 #22 ENSHGLG00000041834 #23 ENSHGLG00000005110 #24 ENSHGLG00000017431 #23 ENSHGLG00000018181 #26 RIPK4 (ENSHGLG00000011078) #27 PRDM15 (ENSHGLG00000016972) #28 C2CD2 (ENSHGLG00000016958) #29 ZBTB21 (ENSHGLG00000017068) #30 ENSHGLG00000015409 #31 ENSHGLG00000009228 ENSHGLG00000035485 #32 ENSHGLG00000040957 #32 TFF3 (ENSHGLG00000007574) #33 TFF2 (ENSHGLG00000006500) #34 ENSHGLG00000050421 Sciuridae ANCESTRAL SPECIES 12 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000185720 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Marmotini ANCESTRAL SPECIES 13 ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000185720 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00950000182901.a.a.a.b.b ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00960000188749 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 ENSGT00940000159245 Marmotini_b ANCESTRAL SPECIES 30 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00950000182901.a.a.a.b.b ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686 #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00960000188749 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 ENSGT00940000159245 Arctic ground squirrel MODERN SPECIES 212 KCNJ6 (ENSUPAG00010020183) KCNJ15 (ENSUPAG00010020189) ERG (ENSUPAG00010020197) ETS2 (ENSUPAG00010020230) BRWD1 (ENSUPAG00010020246) ENSUPAG00010020321 ENSUPAG00010020326 ENSUPAG00010020344 LCA5L (ENSUPAG00010020362) SH3BGR (ENSUPAG00010020382) ENSUPAG00010020395 B3GALT5 (ENSUPAG00010020398) ENSUPAG00010020403 PCP4 (ENSUPAG00010020435) #20 DSCAM (ENSUPAG00010020438) #21 BACE2 (ENSUPAG00010020456) #22 Squirrel MODERN SPECIES 100 ENSSTOG00000020762 DYRK1A (ENSSTOG00000016151) KCNJ6 (ENSSTOG00000016154) KCNJ15 (ENSSTOG00000000052) ERG (ENSSTOG00000025814) ETS2 (ENSSTOG00000024655) PSMG1 (ENSSTOG00000007084) BRWD1 (ENSSTOG00000027149) HMGN1 (ENSSTOG00000030815) GET1 (ENSSTOG00000012736) SH3BGR (ENSSTOG00000020100) B3GALT5 (ENSSTOG00000012749) ENSSTOG00000002986 PCP4 (ENSSTOG00000033674) #20 DSCAM (ENSSTOG00000004849) #21 BACE2 (ENSSTOG00000011669) #22 MX1 (ENSSTOG00000012846) #23 FAM3B (ENSSTOG00000006382) #24 TMPRSS2 (ENSSTOG00000012868) #26 RIPK4 (ENSSTOG00000020499) #27 PRDM15 (ENSSTOG00000000262) #28 C2CD2 (ENSSTOG00000015690) #29 ZBTB21 (ENSSTOG00000010003) #30 UMODL1 (ENSSTOG00000027158) #31 ABCG1 (ENSSTOG00000027580) #32 TFF3 (ENSSTOG00000000593) #33 TMPRSS3 (ENSSTOG00000024702) #35 ENSSTOG00000000600 #36 RSPH1 (ENSSTOG00000002331) #37 SLC37A1 (ENSSTOG00000025445) PDE9A (ENSSTOG00000001452) Alpin marmot MODERN SPECIES 4 KCNJ15 (ENSMMMG00000003594) ERG (ENSMMMG00000003632) ETS2 (ENSMMMG00000004068) PSMG1 (ENSMMMG00000004106) ENSMMMG00000004110 BRWD1 (ENSMMMG00000004116) HMGN1 (ENSMMMG00000004197) GET1 (ENSMMMG00000004202) LCA5L (ENSMMMG00000004259) SH3BGR (ENSMMMG00000004305) ENSMMMG00000004462 B3GALT5 (ENSMMMG00000004484) ENSMMMG00000004498 PCP4 (ENSMMMG00000004533) #20 DSCAM (ENSMMMG00000004573) #21 BACE2 (ENSMMMG00000004641) #22 FAM3B (ENSMMMG00000004645) #24 MX1 (ENSMMMG00000004765) #23 TMPRSS2 (ENSMMMG00000010132) #26 RIPK4 (ENSMMMG00000010156) #27 PRDM15 (ENSMMMG00000010191) #28 C2CD2 (ENSMMMG00000010233) #29 ENSMMMG00000010266 #30 UMODL1 (ENSMMMG00000010282) #31 ABCG1 (ENSMMMG00000010456) #32 TFF3 (ENSMMMG00000010483) #33 ENSMMMG00000010491 ENSMMMG00000010506 TMPRSS3 (ENSMMMG00000010515) #35 UBASH3A (ENSMMMG00000010550) #36 RSPH1 (ENSMMMG00000010607) #37 Eurasian red squirrel MODERN SPECIES 1 KCNJ6 (ENSSVLG00005019383) KCNJ15 (ENSSVLG00005019329) ERG (ENSSVLG00005018996) ETS2 (ENSSVLG00005018858) PSMG1 (ENSSVLG00005018720) ENSSVLG00005018680 ENSSVLG00005018655 ENSSVLG00005018529 GET1 (ENSSVLG00005018408) LCA5L (ENSSVLG00005018302) SH3BGR (ENSSVLG00005018209) B3GALT5 (ENSSVLG00005018186) ENSSVLG00005018094 PCP4 (ENSSVLG00005018045) #20 DSCAM (ENSSVLG00005017352) #21 BACE2 (ENSSVLG00005017213) #22 ENSSVLG00005016342 #23 FAM3B (ENSSVLG00005016099) #24 ENSSVLG00005015978 #23 TMPRSS2 (ENSSVLG00005015845) #26 RIPK4 (ENSSVLG00005015741) #27 PRDM15 (ENSSVLG00005015213) #28 C2CD2 (ENSSVLG00005015130) #29 ZBTB21 (ENSSVLG00005015081) #30 UMODL1 (ENSSVLG00005014644) #31 ABCG1 (ENSSVLG00005014331) #32 ENSSVLG00005014286 #33 ENSSVLG00005014242 #33 TFF2 (ENSSVLG00005014174) #34 ENSSVLG00005014123 TMPRSS3 (ENSSVLG00005013778) #35 Rodentia_B ANCESTRAL SPECIES 2 ENSGT00940000157408 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Myomorpha ANCESTRAL SPECIES 14 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686 #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Muroidea ANCESTRAL SPECIES 11 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686 #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000159975 #31 ENSGT00940000160131 #32 ENSGT00940000162416 #33 ENSGT00940000161334 #34 ENSGT00940000162623 ENSGT00940000158589 #35 ENSGT00940000160841 #36 ENSGT00940000157240 #37 Muroidea_A ANCESTRAL SPECIES 17 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Cricetidae ANCESTRAL SPECIES 16 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Cricetinae ANCESTRAL SPECIES 10 ENSGT00940000157408 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 ENSGT00940000153805.q.b.a.a.a.a.a.a.a.a.c.a.a Chinese hamster chok1gshd MODERN SPECIES 382 Kcnj6 (ENSCGRG00001008563) Kcnj15 (ENSCGRG00001014785) Erg (ENSCGRG00001005751) Ets2 (ENSCGRG00001019241) Psmg1 (ENSCGRG00001023463) Brwd1 (ENSCGRG00001019901) Hmgn1 (ENSCGRG00001006425) ENSCGRG00001015026 ENSCGRG00001008454 Lca5l (ENSCGRG00001001508) ENSCGRG00001018634 B3galt5 (ENSCGRG00001003465) Igsf5 (ENSCGRG00001017358) ENSCGRG00001011223 #20 Dscam (ENSCGRG00001020907) #21 Bace2 (ENSCGRG00001006826) #22 Mx1 (ENSCGRG00001009938) #23 Fam3b (ENSCGRG00001021679) #24 Mx2 (ENSCGRG00001004304) #23 Tmprss2 (ENSCGRG00001008718) #26 ENSCGRG00001011892 Ripk4 (ENSCGRG00001021625) #27 Prdm15 (ENSCGRG00001012883) #28 C2cd2 (ENSCGRG00001018582) #29 Zbtb21 (ENSCGRG00001012061) #30 ENSCGRG00001016488 Golden Hamster MODERN SPECIES 659 Dyrk1a (ENSMAUG00000018415) Kcnj6 (ENSMAUG00000011546) Kcnj15 (ENSMAUG00000009656) Erg (ENSMAUG00000012151) Ets2 (ENSMAUG00000012072) Psmg1 (ENSMAUG00000014265) ENSMAUG00000004019 ENSMAUG00000005957 Hmgn1 (ENSMAUG00000009433) ENSMAUG00000008620 Lca5l (ENSMAUG00000001467) ENSMAUG00000001722 Igsf5 (ENSMAUG00000018757) ENSMAUG00000001783 #20 Dscam (ENSMAUG00000002565) #21 Bace2 (ENSMAUG00000018970) #22 Mx1 (ENSMAUG00000000088) #23 Fam3b (ENSMAUG00000018355) #24 Mx2 (ENSMAUG00000016913) #23 Tmprss2 (ENSMAUG00000018948) #26 Ripk4 (ENSMAUG00000017222) #27 Prdm15 (ENSMAUG00000013730) #28 C2cd2 (ENSMAUG00000013544) #29 ENSMAUG00000011188 #30 ENSMAUG00000014891 ENSMAUG00000014178 ENSMAUG00000013074 ENSMAUG00000011099 Cricetidae_B ANCESTRAL SPECIES 13 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Prairie vole MODERN SPECIES 155 Igsf5 (ENSMOCG00000013940) Itgb2l (ENSMOCG00000000046) ENSMOCG00000016357 #20 Dscam (ENSMOCG00000000769) #21 Bace2 (ENSMOCG00000018255) #22 Mx1 (ENSMOCG00000015113) #23 Fam3b (ENSMOCG00000001358) #24 Mx2 (ENSMOCG00000015763) #23 Tmprss2 (ENSMOCG00000009120) #26 Ripk4 (ENSMOCG00000004535) #27 Prdm15 (ENSMOCG00000019515) #28 C2cd2 (ENSMOCG00000007215) #29 ENSMOCG00000000330 #30 Northern American deer mouse MODERN SPECIES 3 Kcnj15 (ENSPEMG00000001507) Erg (ENSPEMG00000008582) Ets2 (ENSPEMG00000012273) ENSPEMG00000031015 Psmg1 (ENSPEMG00000010416) Brwd1 (ENSPEMG00000014898) ENSPEMG00000020156 ENSPEMG00000027492 Lca5l (ENSPEMG00000020214) ENSPEMG00000003252 B3galt5 (ENSPEMG00000006922) Igsf5 (ENSPEMG00000007617) Itgb2l (ENSPEMG00000009654) ENSPEMG00000029164 #20 Dscam (ENSPEMG00000013979) #21 Bace2 (ENSPEMG00000015582) #22 ENSPEMG00000015989 #23 Fam3b (ENSPEMG00000017357) #24 ENSPEMG00000014739 #23 ENSPEMG00000027181 #23 ENSPEMG00000024660 #23 ENSPEMG00000027256 #23 Tmprss2 (ENSPEMG00000007177) #26 Ripk4 (ENSPEMG00000016616) #27 Prdm15 (ENSPEMG00000011962) #28 C2cd2 (ENSPEMG00000014730) #29 Zbtb21 (ENSPEMG00000025526) #30 ENSPEMG00000030407 Morc3 (ENSPEMG00000011221) Dop1b (ENSPEMG00000007073) Cbr3 (ENSPEMG00000018622) Murinae ANCESTRAL SPECIES 13 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Mus ANCESTRAL SPECIES 13 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Mus_A ANCESTRAL SPECIES 18 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A.u.b ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Mus_B ANCESTRAL SPECIES 18 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A.u.a ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Mouse MODERN SPECIES 7 Kcnj15 (ENSMUSG00000062609) Erg (ENSMUSG00000040732) Ets2 (ENSMUSG00000022895) Psmg1 (ENSMUSG00000022913) Brwd1 (ENSMUSG00000022914) Hmgn1 (ENSMUSG00000040681) Get1 (ENSMUSG00000023147) Lca5l (ENSMUSG00000045275) Sh3bgr (ENSMUSG00000040666) B3galt5 (ENSMUSG00000074892) Igsf5 (ENSMUSG00000000159) Gm49948 (ENSMUSG00000117081) Itgb2l (ENSMUSG00000000157) Pcp4 (ENSMUSG00000090223) Dscam (ENSMUSG00000050272) #21 Bace2 (ENSMUSG00000040605) #22 Mx1 (ENSMUSG00000000386) #23 Fam3b (ENSMUSG00000022938) #24 Mx2 (ENSMUSG00000023341) #23 Tmprss2 (ENSMUSG00000000385) #26 Ripk4 (ENSMUSG00000005251) #27 Prdm15 (ENSMUSG00000014039) #28 C2cd2 (ENSMUSG00000045975) #29 Zbtb21 (ENSMUSG00000046962) #30 B230307C23Rik (ENSMUSG00000080717) A630089N07Rik (ENSMUSG00000116673) Mus_C ANCESTRAL SPECIES 12 ENSGT01080000257365.b.a.b.a.a ENSGT00990000203615.b.a.a.a.b ENSGT00940000160662 ENSGT00940000160202 ENSGT00500000044950 ENSGT00950000183107.a.b.a ENSGT00950000182802.A.u.a ENSGT00390000008610.a.b.a.a.b ENSGT00560000077266.b ENSGT00940000159847 ENSGT00940000160964 ENSGT00940000163238 ENSGT01090000259987.a.a.a.d ENSGT00530000064267 #20 ENSGT00940000154678.a.a #21 ENSGT00940000159548 #22 ENSGT00940000155686.j #23 ENSGT00950000183004.a.b.a.b #24 ENSGT00940000155686.i #23 ENSGT00940000155207.a.b #26 ENSGT00940000159908 #27 ENSGT00940000157890 #28 ENSGT00530000063764.a #29 ENSGT00940000161028 #30 Steppe mouse MODERN SPECIES 2600 Bace2 (ENSMSIG00000020064) #22 ENSMSIG00000020084 #23 Fam3b (ENSMSIG00000020247) #24 ENSMSIG00000020383 #23 ENSMSIG00000020427 #26 Ripk4 (ENSMSIG00000020456) #27 Prdm15 (ENSMSIG00000020473) #28 ENSMSIG00000020580 #30 ENSMSIG00000020680 spretus MODERN SPECIES 7 Dyrk1a (MGP_SPRETEiJ_G0021898) Kcnj6 (MGP_SPRETEiJ_G0021899) Kcnj15 (MGP_SPRETEiJ_G0021900) Erg (MGP_SPRETEiJ_G0021901) Ets2 (MGP_SPRETEiJ_G0021902) Psmg1 (MGP_SPRETEiJ_G0021903) Hmgn1 (MGP_SPRETEiJ_G0021905) MGP_SPRETEiJ_G0021906 Lca5l (MGP_SPRETEiJ_G0021907) MGP_SPRETEiJ_G0021908 B3galt5 (MGP_SPRETEiJ_G0021909) Igsf5 (MGP_SPRETEiJ_G0021910) Itgb2l (MGP_SPRETEiJ_G0021911) MGP_SPRETEiJ_G0021912 #20 Dscam (MGP_SPRETEiJ_G0021913) #21 Bace2 (MGP_SPRETEiJ_G0021914) #22 MGP_SPRETEiJ_G0021915 #23 Fam3b (MGP_SPRETEiJ_G0021916) #24 Tmprss2 (MGP_SPRETEiJ_G0021917) #26 Ripk4 (MGP_SPRETEiJ_G0021918) #27 Prdm15 (MGP_SPRETEiJ_G0021919) #28 C2cd2 (MGP_SPRETEiJ_G0021920) #29 Zbtb21 (MGP_SPRETEiJ_G0021921) #30 Ryukyu mouse MODERN SPECIES 7 Kcnj6 (MGP_CAROLIEiJ_G0020993) Kcnj15 (MGP_CAROLIEiJ_G0020994) Erg (MGP_CAROLIEiJ_G0020995) Ets2 (MGP_CAROLIEiJ_G0020996) Psmg1 (MGP_CAROLIEiJ_G0020997) Brwd1 (MGP_CAROLIEiJ_G0020998) MGP_CAROLIEiJ_G0020999 MGP_CAROLIEiJ_G0021000 Lca5l (MGP_CAROLIEiJ_G0021001) MGP_CAROLIEiJ_G0021002 B3galt5 (MGP_CAROLIEiJ_G0021003) Igsf5 (MGP_CAROLIEiJ_G0021004) Itgb2l (MGP_CAROLIEiJ_G0021005) MGP_CAROLIEiJ_G0021006 #20 Dscam (MGP_CAROLIEiJ_G0021007) #21 Bace2 (MGP_CAROLIEiJ_G0021008) #22 MGP_CAROLIEiJ_G0021009 #23 Fam3b (MGP_CAROLIEiJ_G0021010) #24 MGP_CAROLIEiJ_G0008949 #23 Ripk4 (MGP_CAROLIEiJ_G0021011) #27 Prdm15 (MGP_CAROLIEiJ_G0021012) #28 C2cd2 (MGP_CAROLIEiJ_G0021013) #29 Zbtb21 (MGP_CAROLIEiJ_G0021014) #30 Shrew mouse MODERN SPECIES 3 Kcnj6 (MGP_PahariEiJ_G0016698) Kcnj15 (MGP_PahariEiJ_G0016699) Erg (MGP_PahariEiJ_G0016700) Ets2 (MGP_PahariEiJ_G0016701) Psmg1 (MGP_PahariEiJ_G0016702) MGP_PahariEiJ_G0016703 MGP_PahariEiJ_G0016704 MGP_PahariEiJ_G0016705 Lca5l (MGP_PahariEiJ_G0016706) MGP_PahariEiJ_G0016707 B3galt5 (MGP_PahariEiJ_G0016708) Igsf5 (MGP_PahariEiJ_G0016709) Itgb2l (MGP_PahariEiJ_G0016710) MGP_PahariEiJ_G0016711 #20 Dscam (MGP_PahariEiJ_G0016712) #21 Bace2 (MGP_PahariEiJ_G0016713) #22 MGP_PahariEiJ_G0016714 #23 Fam3b (MGP_PahariEiJ_G0016715) #24 MGP_PahariEiJ_G0008412 #23 Tmprss2 (MGP_PahariEiJ_G0016716) #26 Ripk4 (MGP_PahariEiJ_G0016717) #27 Prdm15 (MGP_PahariEiJ_G0016718) #28 C2cd2 (MGP_PahariEiJ_G0016719) #29 Zbtb21 (MGP_PahariEiJ_G0016720) #30 Rat MODERN SPECIES 2 Kcnj15 (ENSRNOG00000062944) Erg (ENSRNOG00000001652) Ets2 (ENSRNOG00000001647) Psmg1 (ENSRNOG00000001643) Brwd1 (ENSRNOG00000001632) ENSRNOG00000067977 Hmgn1 (ENSRNOG00000048226) Get1 (ENSRNOG00000001629) Lca5l (ENSRNOG00000028248) Sh3bgr (ENSRNOG00000028238) B3galt5 (ENSRNOG00000030983) Igsf5 (ENSRNOG00000028216) ENSRNOG00000063024 Pcp4 (ENSRNOG00000001628) #20 Dscam (ENSRNOG00000027992) #21 Bace2 (ENSRNOG00000001953) #22 Mx1 (ENSRNOG00000001959) #23 Fam3b (ENSRNOG00000001962) #24 Mx2 (ENSRNOG00000001963) #23 Tmprss2 (ENSRNOG00000001976) #26 Ripk4 (ENSRNOG00000001618) #27 Prdm15 (ENSRNOG00000001620) #28 C2cd2 (ENSRNOG00000001621) #29 Zbtb21 (ENSRNOG00000001623) #30 Nsun3 (ENSRNOG00000070121) RGD1565472 (ENSRNOG00000046991) Epha6 (ENSRNOG00000029184) Arl6 (ENSRNOG00000001689) Crybg3 (ENSRNOG00000045728) Riox2 (ENSRNOG00000001680) Gabrr3 (ENSRNOG00000001679) Upper Galilee mountains blind mole rat MODERN SPECIES 1566 Bace2 (ENSNGAG00000020019) #22 ENSNGAG00000017263 #23 Lesser Egyptian jerboa MODERN SPECIES 54 Dyrk1a (ENSJJAG00000022874) Kcnj6 (ENSJJAG00000010439) Kcnj15 (ENSJJAG00000016880) Erg (ENSJJAG00000024273) Ets2 (ENSJJAG00000000366) Psmg1 (ENSJJAG00000000631) ENSJJAG00000014608 ENSJJAG00000010871 ENSJJAG00000013400 ENSJJAG00000014499 Lca5l (ENSJJAG00000017192) ENSJJAG00000018659 Igsf5 (ENSJJAG00000000540) ENSJJAG00000013366 #20 Dscam (ENSJJAG00000010430) #21 Bace2 (ENSJJAG00000006557) #22 ENSJJAG00000012773 ENSJJAG00000023642 #24 ENSJJAG00000023808 #23 Tmprss2 (ENSJJAG00000021090) #26 Ripk4 (ENSJJAG00000023752) #27 Prdm15 (ENSJJAG00000016457) #28 C2cd2 (ENSJJAG00000016581) #29 Zbtb21 (ENSJJAG00000002063) #30 Umodl1 (ENSJJAG00000012073) #31 Abcg1 (ENSJJAG00000011288) #32 Tff3 (ENSJJAG00000014849) #33 Tff2 (ENSJJAG00000022987) #34 Tff1 (ENSJJAG00000020776) Tmprss3 (ENSJJAG00000017683) #35 Ubash3a (ENSJJAG00000018947) #36 Kangaroo rat MODERN SPECIES 422 Ets2 (ENSDORG00000006046) Psmg1 (ENSDORG00000024369) ENSDORG00000028290 ENSDORG00000023919 Hmgn1 (ENSDORG00000024516) ENSDORG00000023446 Lca5l (ENSDORG00000016061) ENSDORG00000010100 B3galt5 (ENSDORG00000027270) Igsf5 (ENSDORG00000005042) ENSDORG00000007355 ENSDORG00000025922 #20 Dscam (ENSDORG00000002348) #21 ENSDORG00000030205 Bace2 (ENSDORG00000010948) #22 ENSDORG00000027605 #23 Fam3b (ENSDORG00000011095) #24 ENSDORG00000003337 #23 Tmprss2 (ENSDORG00000003340) #26 Ripk4 (ENSDORG00000008414) #27 Prdm15 (ENSDORG00000009748) #28 C2cd2 (ENSDORG00000000978) #29 ENSDORG00000028102 Zbtb21 (ENSDORG00000000981) #30 Umodl1 (ENSDORG00000001772) #31 Abcg1 (ENSDORG00000025745) #32 Tff3 (ENSDORG00000029966) #33 Tff2 (ENSDORG00000003845) #34 Tff1 (ENSDORG00000009227) Tmprss3 (ENSDORG00000009229) #35 Lagomorpha ANCESTRAL SPECIES ENSGT00940000159548 #22 Pika MODERN SPECIES 2483 ENSOPRG00000008817 #22 Rabbit MODERN SPECIES 565 BACE2 (ENSOCUG00000028198) #22 Tree shrew MODERN SPECIES 4475 ENSTBEG00000005129 BACE2 (ENSTBEG00000006372) #22 ENSTBEG00000006984 #24