Laurasiatheria	ANCESTRAL SPECIES	11	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000165250	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Laurasiatheria_a	ANCESTRAL SPECIES	8	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Laurasiatheria_b	ANCESTRAL SPECIES	8	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Laurasiatheria_c	ANCESTRAL SPECIES	8	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Equus	ANCESTRAL SPECIES	12	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581	ENSGT00830000128422
Donkey	MODERN SPECIES	22	TMEM175 (ENSEASG00005022646) #7	DGKQ (ENSEASG00005022651) #8	SLC26A1 (ENSEASG00005022673) #9	IDUA (ENSEASG00005022661) #10	FGFRL1 (ENSEASG00005022675) #11	RNF212 (ENSEASG00005036465) #12	ENSEASG00005022677 #13	SPON2 (ENSEASG00005022679) #14	CTBP1 (ENSEASG00005022682) #15	MAEA (ENSEASG00005022693) #16	UVSSA (ENSEASG00005022702) #17	ENSEASG00005031810 #18	SLBP (ENSEASG00005024705) #19	TMEM129 (ENSEASG00005022718) #20	TACC3 (ENSEASG00005022722) #21	FGFR3 (ENSEASG00005022725) #22	LETM1 (ENSEASG00005022727) #23	NSD2 (ENSEASG00005022729) #24	NELFA (ENSEASG00005022732) #25	C4orf48 (ENSEASG00005022733) #26	NAT8L (ENSEASG00005022734) #27	HAUS3 (ENSEASG00005022762) #28	POLN (ENSEASG00005022744) #29	MXD4 (ENSEASG00005034001) #30	ENSEASG00005028915 #31	ENSEASG00005022764 #32	CFAP99 (ENSEASG00005022766) #33	ENSEASG00005036723 #34	RNF4 (ENSEASG00005031929) #35	ENSEASG00005035809 #36	FAM193A (ENSEASG00005022783) #37
Horse	MODERN SPECIES	22	DGKQ (ENSECAG00000022309) #8	IDUA (ENSECAG00000019632) #10	SLC26A1 (ENSECAG00000022104) #9	FGFRL1 (ENSECAG00000018253) #11	ENSECAG00000052273	RNF212 (ENSECAG00000038589) #12	ENSECAG00000018022 #13	SPON2 (ENSECAG00000016940) #14	CTBP1 (ENSECAG00000015999) #15	MAEA (ENSECAG00000013742) #16	UVSSA (ENSECAG00000012127) #17	NKX1-1 (ENSECAG00000031807)	SLBP (ENSECAG00000011689) #19	TMEM129 (ENSECAG00000011634) #20	TACC3 (ENSECAG00000011380) #21	FGFR3 (ENSECAG00000019533) #22	LETM1 (ENSECAG00000018569) #23	NSD2 (ENSECAG00000011661) #24	NELFA (ENSECAG00000010240) #25	NAT8L (ENSECAG00000009867) #27	HAUS3 (ENSECAG00000004593) #28	POLN (ENSECAG00000007802) #29	MXD4 (ENSECAG00000029077) #30	ENSECAG00000058211 ##31	ZFYVE28 (ENSECAG00000024955) #31	CFAP99 (ENSECAG00000029686) #33	ENSECAG00000060379 #34	FAM193A (ENSECAG00000024501) #37	TNIP2 (ENSECAG00000024134)	SH3BP2 (ENSECAG00000021841)	ADD1 (ENSECAG00000013136)
Chiroptera	ANCESTRAL SPECIES	9	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.f #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Megabat	MODERN SPECIES	2087																FGFR3 (ENSPVAG00000007535) #22	LETM1 (ENSPVAG00000007537) #23
Microchiroptera	ANCESTRAL SPECIES	10	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.f #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217.ac #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Greater horseshoe bat	MODERN SPECIES	23	TMEM175 (ENSRFEG00010012470) #7	DGKQ (ENSRFEG00010012388) #8	SLC26A1 (ENSRFEG00010012284) #9	IDUA (ENSRFEG00010012246) #10	FGFRL1 (ENSRFEG00010012188) #11	ENSRFEG00010012091 #13	SPON2 (ENSRFEG00010012048) #14	CTBP1 (ENSRFEG00010011872) #15	MAEA (ENSRFEG00010011546) #16	UVSSA (ENSRFEG00010011482) #17	NKX1-1 (ENSRFEG00010011426)	FAM53A (ENSRFEG00010011394)	SLBP (ENSRFEG00010011166) #19	TMEM129 (ENSRFEG00010011065) #20	TACC3 (ENSRFEG00010010981) #21	FGFR3 (ENSRFEG00010010819) #22	LETM1 (ENSRFEG00010010660) #23	NSD2 (ENSRFEG00010010545) #24	NELFA (ENSRFEG00010010351) #25	C4orf48 (ENSRFEG00010010259) #26	NAT8L (ENSRFEG00010010189) #27	POLN (ENSRFEG00010009949) #29	HAUS3 (ENSRFEG00010009879) #28	MXD4 (ENSRFEG00010009834) #30	ZFYVE28 (ENSRFEG00010009726) #31	CFAP99 (ENSRFEG00010009563) #33	RNF4 (ENSRFEG00010009477) #35	FAM193A (ENSRFEG00010009206) #37	TNIP2 (ENSRFEG00010009107)	SH3BP2 (ENSRFEG00010008972)	ADD1 (ENSRFEG00010008824)
Carnivora	ANCESTRAL SPECIES	5	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Felidae	ANCESTRAL SPECIES	4	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Panthera	ANCESTRAL SPECIES	5	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429.x #24	ENSGT00940000157429.w.a #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b
Panthera_a	ANCESTRAL SPECIES	2	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429.x #24	ENSGT00940000157429.w.a #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
lion	MODERN SPECIES	4	GAK (ENSPLOG00000005676)	TMEM175 (ENSPLOG00000005620) #7	DGKQ (ENSPLOG00000005591) #8	SLC26A1 (ENSPLOG00000005194) #9	IDUA (ENSPLOG00000005177) #10	FGFRL1 (ENSPLOG00000005150) #11	ENSPLOG00000005044 #13	SPON2 (ENSPLOG00000005028) #14	CTBP1 (ENSPLOG00000004983) #15	MAEA (ENSPLOG00000004894) #16	UVSSA (ENSPLOG00000004830) #17	NKX1-1 (ENSPLOG00000004811)	SLBP (ENSPLOG00000004771) #19	TMEM129 (ENSPLOG00000004687) #20	TACC3 (ENSPLOG00000004666) #21	FGFR3 (ENSPLOG00000004622) #22	LETM1 (ENSPLOG00000004551) #23	NSD2 (ENSPLOG00000004484) #24	NELFA (ENSPLOG00000004443) #25	C4orf48 (ENSPLOG00000004418) #26	ENSPLOG00000004406 #27	HAUS3 (ENSPLOG00000004393) #28	ENSPLOG00000004384	MXD4 (ENSPLOG00000004376) #30	ENSPLOG00000004365 #31	ENSPLOG00000004349 #31	CFAP99 (ENSPLOG00000004314) #33	RNF4 (ENSPLOG00000004275) #35	ENSPLOG00000004250	FAM193A (ENSPLOG00000004221) #37	ENSPLOG00000004190
leopard	MODERN SPECIES	25																FGFR3 (ENSPPRG00000018012) #22	LETM1 (ENSPPRG00000019273) #23	ENSPPRG00000000058 #24	ENSPPRG00000002562 #24	NELFA (ENSPPRG00000003777) #25	C4orf48 (ENSPPRG00000004524) #26	ENSPPRG00000004633 #27	HAUS3 (ENSPPRG00000007568) #28	MXD4 (ENSPPRG00000009897) #30	ENSPPRG00000012352 #31	CFAP99 (ENSPPRG00000013633) #33	RNF4 (ENSPPRG00000020972) #35	ENSPPRG00000022001	FAM193A (ENSPPRG00000023349) #37	TNIP2 (ENSPPRG00000022784)	SH3BP2 (ENSPPRG00000000297)
Cat	MODERN SPECIES	235	TMEM175 (ENSFCAG00000012656) #7	DGKQ (ENSFCAG00000012659) #8	ENSFCAG00000026340 #9	IDUA (ENSFCAG00000004723) #10	FGFRL1 (ENSFCAG00000043643) #11	RNF212 (ENSFCAG00000046779) #12	ENSFCAG00000018929 #13	SPON2 (ENSFCAG00000036077) #14	CTBP1 (ENSFCAG00000002265) #15	MAEA (ENSFCAG00000002950) #16	UVSSA (ENSFCAG00000002951) #17	NKX1-1 (ENSFCAG00000043543)	SLBP (ENSFCAG00000000169) #19	TMEM129 (ENSFCAG00000025439) #20	TACC3 (ENSFCAG00000000171) #21	FGFR3 (ENSFCAG00000018385) #22	LETM1 (ENSFCAG00000010616) #23	NSD2 (ENSFCAG00000037938) #24	NELFA (ENSFCAG00000010623) #25	CB1H4orf48 (ENSFCAG00000033658) #26	NAT8L (ENSFCAG00000044588) #27	HAUS3 (ENSFCAG00000027704) #28	MXD4 (ENSFCAG00000042853) #30	ZFYVE28 (ENSFCAG00000052700) #31	CFAP99 (ENSFCAG00000037967) #33	RNF4 (ENSFCAG00000004051) #35	FAM193A (ENSFCAG00000004056) #37	TNIP2 (ENSFCAG00000004062)	ENSFCAG00000047433	SH3BP2 (ENSFCAG00000025020)	ENSFCAG00000028314
Caniformia	ANCESTRAL SPECIES	7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Canidae	ANCESTRAL SPECIES	21	ENSGT00390000010628	ENSGT00390000005639.a.a	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00530000063669.a	ENSGT00950000186028	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Red fox	MODERN SPECIES	1	PROM1 (ENSVVUG00000015384)	TAPT1 (ENSVVUG00000015407)	LDB2 (ENSVVUG00000015458)	QDPR (ENSVVUG00000015478)	CLRN2 (ENSVVUG00000015482)	LAP3 (ENSVVUG00000015485)	MED28 (ENSVVUG00000015489)	FAM184B (ENSVVUG00000015510)	ENSVVUG00000015521	MAEA (ENSVVUG00000015526) #16	UVSSA (ENSVVUG00000015547) #17	FAM53A (ENSVVUG00000015571)	SLBP (ENSVVUG00000015578) #19	TMEM129 (ENSVVUG00000015588) #20	TACC3 (ENSVVUG00000015594) #21	FGFR3 (ENSVVUG00000015935) #22	LETM1 (ENSVVUG00000023797) #23	NSD2 (ENSVVUG00000023814) #24	NELFA (ENSVVUG00000023825) #25	ENSVVUG00000023827 #26	NAT8L (ENSVVUG00000023829) #27	POLN (ENSVVUG00000023835) #29	HAUS3 (ENSVVUG00000023845) #28	MXD4 (ENSVVUG00000023848) #30	ZFYVE28 (ENSVVUG00000023859) #31	CFAP99 (ENSVVUG00000023861) #33	RNF4 (ENSVVUG00000023864) #35	ENSVVUG00000023867	FAM193A (ENSVVUG00000023873) #37	TNIP2 (ENSVVUG00000023886)	SH3BP2 (ENSVVUG00000023905)
Canis_lupus	ANCESTRAL SPECIES	23	ENSGT00390000005639.a.a	ENSGT00940000155341.h.n	ENSGT00390000000470	ENSGT00850000132319.a.a.b	ENSGT00530000063255.B	ENSGT00390000006192	ENSGT00530000063669.a	ENSGT00950000186028	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Dingo	MODERN SPECIES	138	ENSCAFG00020012229	ENSCAFG00020012245	QDPR (ENSCAFG00020012248)	CLRN2 (ENSCAFG00020012251)	LAP3 (ENSCAFG00020012262)	MED28 (ENSCAFG00020012266)	FAM184B (ENSCAFG00020012270)	ENSCAFG00020012281	MAEA (ENSCAFG00020012285) #16	UVSSA (ENSCAFG00020012302) #17	NKX1-1 (ENSCAFG00020012312)	FAM53A (ENSCAFG00020012319)	SLBP (ENSCAFG00020012334) #19	TMEM129 (ENSCAFG00020012337) #20	TACC3 (ENSCAFG00020012340) #21	FGFR3 (ENSCAFG00020012349) #22	LETM1 (ENSCAFG00020012352) #23	ENSCAFG00020012359	NSD2 (ENSCAFG00020012364) #24	NELFA (ENSCAFG00020012377) #25	C4orf48 (ENSCAFG00020012395) #26	NAT8L (ENSCAFG00020012398) #27	POLN (ENSCAFG00020012402) #29	HAUS3 (ENSCAFG00020012427) #28	MXD4 (ENSCAFG00020012430) #30	ZFYVE28 (ENSCAFG00020012447) #31	CFAP99 (ENSCAFG00020012449) #33	RNF4 (ENSCAFG00020012490) #35	FAM193A (ENSCAFG00020012546) #37	TNIP2 (ENSCAFG00020012703)	SH3BP2 (ENSCAFG00020012726)
Dog	MODERN SPECIES	22	ENSCAFG00845000676	ENSCAFG00845000652	QDPR (ENSCAFG00845000600)	CLRN2 (ENSCAFG00845000538)	LAP3 (ENSCAFG00845000510)	MED28 (ENSCAFG00845000492)	ENSCAFG00845000449	ENSCAFG00845000433	ENSCAFG00845000407 #16	UVSSA (ENSCAFG00845000348) #17	NKX1-1 (ENSCAFG00845000317)	FAM53A (ENSCAFG00845000302)	SLBP (ENSCAFG00845000261) #19	TMEM129 (ENSCAFG00845000213) #20	TACC3 (ENSCAFG00845013476) #21	FGFR3 (ENSCAFG00845013339) #22	LETM1 (ENSCAFG00845013211) #23	ENSCAFG00845013175	ENSCAFG00845013159	NSD2 (ENSCAFG00845013019) #24	NELFA (ENSCAFG00845012841) #25	C3H4orf48 (ENSCAFG00845012789) #26	NAT8L (ENSCAFG00845012758) #27	POLN (ENSCAFG00845012682) #29	MXD4 (ENSCAFG00845012610) #30	ZFYVE28 (ENSCAFG00845012527) #31	CFAP99 (ENSCAFG00845012463) #33	RNF4 (ENSCAFG00845012388) #35	FAM193A (ENSCAFG00845012303) #37	TNIP2 (ENSCAFG00845012210)	SH3BP2 (ENSCAFG00845012142)
Caniformia_b	ANCESTRAL SPECIES	5	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Mustelinae	ANCESTRAL SPECIES	69	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
American mink	DUPLICATION
American mink	MODERN SPECIES	139	SLC26A1 (ENSNVIG00000022268) #9	FGFRL1 (ENSNVIG00000022275) #11	RNF212 (ENSNVIG00000022299) #12	ENSNVIG00000022306 #13	SPON2 (ENSNVIG00000022329) #14	CTBP1 (ENSNVIG00000022335) #15	ENSNVIG00000022343	MAEA (ENSNVIG00000022353) #16	UVSSA (ENSNVIG00000022388) #17	NKX1-1 (ENSNVIG00000022402)	FAM53A (ENSNVIG00000022407)	SLBP (ENSNVIG00000022417) #19	TMEM129 (ENSNVIG00000000024) #20	ENSNVIG00000000076	ENSNVIG00000000109 #22	ENSNVIG00000000117 #22	LETM1 (ENSNVIG00000000166) #23	NSD2 (ENSNVIG00000000194) #24	NELFA (ENSNVIG00000000511) #25	C4orf48 (ENSNVIG00000000550) #26	NAT8L (ENSNVIG00000000559) #27	POLN (ENSNVIG00000000575) #29	HAUS3 (ENSNVIG00000000614) #28	MXD4 (ENSNVIG00000000639) #30	ENSNVIG00000000648 #31	ENSNVIG00000000660 #31	CFAP99 (ENSNVIG00000000667) #33	RNF4 (ENSNVIG00000000683) #35	FAM193A (ENSNVIG00000000739) #37	TNIP2 (ENSNVIG00000000789)	SH3BP2 (ENSNVIG00000000831)
American mink	MODERN SPECIES	139	IDUA (ENSNVIG00000022261) #10	SLC26A1 (ENSNVIG00000022268) #9	FGFRL1 (ENSNVIG00000022275) #11	RNF212 (ENSNVIG00000022299) #12	ENSNVIG00000022306 #13	SPON2 (ENSNVIG00000022329) #14	CTBP1 (ENSNVIG00000022335) #15	ENSNVIG00000022343	MAEA (ENSNVIG00000022353) #16	UVSSA (ENSNVIG00000022388) #17	NKX1-1 (ENSNVIG00000022402)	FAM53A (ENSNVIG00000022407)	SLBP (ENSNVIG00000022417) #19	TMEM129 (ENSNVIG00000000024) #20	ENSNVIG00000000076	ENSNVIG00000000109 #22	ENSNVIG00000000117 #22	LETM1 (ENSNVIG00000000166) #23	NSD2 (ENSNVIG00000000194) #24	NELFA (ENSNVIG00000000511) #25	C4orf48 (ENSNVIG00000000550) #26	NAT8L (ENSNVIG00000000559) #27	POLN (ENSNVIG00000000575) #29	HAUS3 (ENSNVIG00000000614) #28	MXD4 (ENSNVIG00000000639) #30	ENSNVIG00000000648 #31	ENSNVIG00000000660 #31	CFAP99 (ENSNVIG00000000667) #33	RNF4 (ENSNVIG00000000683) #35	FAM193A (ENSNVIG00000000739) #37	TNIP2 (ENSNVIG00000000789)
Ferret	MODERN SPECIES	334	DGKQ (ENSMPUG00000011237) #8	SLC26A1 (ENSMPUG00000011230) #9	IDUA (ENSMPUG00000011225) #10	FGFRL1 (ENSMPUG00000011220) #11	RNF212 (ENSMPUG00000011212) #12	ENSMPUG00000011191 #13	SPON2 (ENSMPUG00000011185) #14	CTBP1 (ENSMPUG00000011182) #15	MAEA (ENSMPUG00000011174) #16	UVSSA (ENSMPUG00000011171) #17	ENSMPUG00000011168	FAM53A (ENSMPUG00000011145)	SLBP (ENSMPUG00000011139) #19	TMEM129 (ENSMPUG00000011130) #20	ENSMPUG00000011062 #21	FGFR3 (ENSMPUG00000011055) #22	LETM1 (ENSMPUG00000011045) #23	NSD2 (ENSMPUG00000011036) #24	NELFA (ENSMPUG00000011031) #25	ENSMPUG00000011023	NAT8L (ENSMPUG00000011019) #27	HAUS3 (ENSMPUG00000011011) #28	MXD4 (ENSMPUG00000010989) #30	ZFYVE28 (ENSMPUG00000010981) #31	CFAP99 (ENSMPUG00000010977) #33	RNF4 (ENSMPUG00000010957) #35	FAM193A (ENSMPUG00000010949) #37	TNIP2 (ENSMPUG00000010947)	SH3BP2 (ENSMPUG00000010942)	ADD1 (ENSMPUG00000010933)	MFSD10 (ENSMPUG00000010909)
Ursidae	ANCESTRAL SPECIES	29	ENSGT00940000159492 #8	ENSGT00390000015494.e #10	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494.f #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581	ENSGT00940000164295
Giant Panda	MODERN SPECIES	2	ENSAMEG00000016756	GAK (ENSAMEG00000016761)	TMEM175 (ENSAMEG00000016795) #7	DGKQ (ENSAMEG00000016800) #8	SLC26A1 (ENSAMEG00000026648) #9	IDUA (ENSAMEG00000016812) #10	ENSAMEG00000029356 #12	ENSAMEG00000024953 #13	SPON2 (ENSAMEG00000023804) #14	CTBP1 (ENSAMEG00000016883) #15	ENSAMEG00000016890 #16	UVSSA (ENSAMEG00000016899) #17	ENSAMEG00000016915 #19	TMEM129 (ENSAMEG00000016921) #20	TACC3 (ENSAMEG00000016924) #21	FGFR3 (ENSAMEG00000014119) #22	LETM1 (ENSAMEG00000014210) #23	NSD2 (ENSAMEG00000014221) #24	NELFA (ENSAMEG00000014240) #25	NAT8L (ENSAMEG00000014278) #27	POLN (ENSAMEG00000014290) #29	HAUS3 (ENSAMEG00000014332) #28	MXD4 (ENSAMEG00000014340) #30	ZFYVE28 (ENSAMEG00000014349) #31	CFAP99 (ENSAMEG00000028653) #33	FAM193A (ENSAMEG00000014383) #37	TNIP2 (ENSAMEG00000014405)	SH3BP2 (ENSAMEG00000014415)	ADD1 (ENSAMEG00000014449)	MFSD10 (ENSAMEG00000014523)	NOP14 (ENSAMEG00000014547)
Ursus	ANCESTRAL SPECIES	105	ENSGT00940000159527	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT00390000015494.f #10	ENSGT01100000263544.c.a.a.b #9	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00940000164052	ENSGT00390000002216	ENSGT00940000158581	ENSGT00830000128422
American black bear	MODERN SPECIES	4289																FGFR3 (ENSUAMG00000008801) #22	ENSUAMG00000008783 #23
Artiodactyla	ANCESTRAL SPECIES	12	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Suina	ANCESTRAL SPECIES	33	ENSGT00940000159492 #8	ENSGT00390000015494 #10	ENSGT01100000263544.c.a.a.b #9	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Chacoan peccary	DUPLICATION
Chacoan peccary	MODERN SPECIES	969																ENSCWAG00000020968 #22	ENSCWAG00000020975 #22	LETM1 (ENSCWAG00000020987) #23	NSD2 (ENSCWAG00000021027) #24	NELFA (ENSCWAG00000021130) #25
Chacoan peccary	MODERN SPECIES	969															ENSCWAG00000020968 #22	ENSCWAG00000020975 #22	LETM1 (ENSCWAG00000020987) #23	NSD2 (ENSCWAG00000021027) #24	NELFA (ENSCWAG00000021130) #25
Pig	MODERN SPECIES	16	DGKQ (ENSSSCG00000027286) #8	IDUA (ENSSSCG00000032262) #10	SLC26A1 (ENSSSCG00000035739) #9	FGFRL1 (ENSSSCG00000036512) #11	ENSSSCG00000045703 #12	ENSSSCG00000032808 #13	SPON2 (ENSSSCG00000039488) #14	CTBP1 (ENSSSCG00000031302) #15	MAEA (ENSSSCG00000032304) #16	UVSSA (ENSSSCG00000037035) #17	NKX1-1 (ENSSSCG00000038573)	FAM53A (ENSSSCG00000032633)	SLBP (ENSSSCG00000055957) #19	TMEM129 (ENSSSCG00000008678) #20	ENSSSCG00000008677 #21	FGFR3 (ENSSSCG00000030827) #22	LETM1 (ENSSSCG00000008675) #23	NSD2 (ENSSSCG00000008682) #24	NELFA (ENSSSCG00000008681) #25	C4orf48 (ENSSSCG00000063120) #26	NAT8L (ENSSSCG00000033541) #27	POLN (ENSSSCG00000027718) #29	MXD4 (ENSSSCG00000008687) #30	ZFYVE28 (ENSSSCG00000008689) #31	CFAP99 (ENSSSCG00000034633) #33	ENSSSCG00000054601	RNF4 (ENSSSCG00000008690) #35	FAM193A (ENSSSCG00000029745) #37	TNIP2 (ENSSSCG00000008691)	SH3BP2 (ENSSSCG00000022004)	ADD1 (ENSSSCG00000008692)
Artiodactyla_a	ANCESTRAL SPECIES	12	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Artiodactyla_b	ANCESTRAL SPECIES	30	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Cetacea	ANCESTRAL SPECIES	12	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Blue whale	MODERN SPECIES	16	TMEM175 (ENSBMSG00010010458) #7	DGKQ (ENSBMSG00010010384) #8	SLC26A1 (ENSBMSG00010010350) #9	IDUA (ENSBMSG00010010336) #10	FGFRL1 (ENSBMSG00010010322) #11	ENSBMSG00010010309 #13	CTBP1 (ENSBMSG00010010280) #15	MAEA (ENSBMSG00010010210) #16	UVSSA (ENSBMSG00010010170) #17	NKX1-1 (ENSBMSG00010010159)	FAM53A (ENSBMSG00010010143)	SLBP (ENSBMSG00010010021) #19	TMEM129 (ENSBMSG00010009983) #20	ENSBMSG00010009968	ENSBMSG00010009945 #21	FGFR3 (ENSBMSG00010009892) #22	LETM1 (ENSBMSG00010009849) #23	ENSBMSG00010009841	ENSBMSG00010009831 #24	ENSBMSG00010009815 #24	NELFA (ENSBMSG00010009791) #25	C4orf48 (ENSBMSG00010009769) #26	NAT8L (ENSBMSG00010009755) #27	POLN (ENSBMSG00010009707) #29	HAUS3 (ENSBMSG00010009672) #28	MXD4 (ENSBMSG00010009650) #30	ENSBMSG00010009628 #31	CFAP99 (ENSBMSG00010009605) #33	RNF4 (ENSBMSG00010009582) #35	FAM193A (ENSBMSG00010009552) #37	TNIP2 (ENSBMSG00010009509)
Odontoceti	ANCESTRAL SPECIES	11	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000154158.k.b	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00550000074784.a.b	ENSGT01030000234916	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00910000148326	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37
Sperm whale	MODERN SPECIES	18	CPLX1 (ENSPCTG00005007813)	PCGF3 (ENSPCTG00005007779)	ENSPCTG00005007664 #10	FGFRL1 (ENSPCTG00005007637) #11	ENSPCTG00005007620 #13	SPON2 (ENSPCTG00005007593) #14	CTBP1 (ENSPCTG00005007566) #15	ENSPCTG00005007552	MAEA (ENSPCTG00005007348) #16	UVSSA (ENSPCTG00005007289) #17	NKX1-1 (ENSPCTG00005007269)	FAM53A (ENSPCTG00005007252)	SLBP (ENSPCTG00005007183) #19	TMEM129 (ENSPCTG00005007122) #20	TACC3 (ENSPCTG00005007081) #21	FGFR3 (ENSPCTG00005006670) #22	LETM1 (ENSPCTG00005006566) #23	ENSPCTG00005006543	ENSPCTG00005006514	NSD2 (ENSPCTG00005006400) #24	NELFA (ENSPCTG00005006320) #25	ENSPCTG00005006283 #26	NAT8L (ENSPCTG00005006259) #27	ENSPCTG00005006248	POLN (ENSPCTG00005006144) #29	HAUS3 (ENSPCTG00005006113) #28	ENSPCTG00005019696	MXD4 (ENSPCTG00005019644) #30	ENSPCTG00005019596 #31	ENSPCTG00005019514 #31	CFAP99 (ENSPCTG00005019388) #33
Odontoceti_a	ANCESTRAL SPECIES	22	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000154158.k.b	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738.r #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00550000074784.a.b	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Dolphin	MODERN SPECIES	2008												ENSTTRG00000010877	ENSTTRG00000010901 #19	TMEM129 (ENSTTRG00000010917) #20	TACC3 (ENSTTRG00000010930) #21	ENSTTRG00000010941 #22	LETM1 (ENSTTRG00000010947) #23
Odontoceti_b	ANCESTRAL SPECIES	11	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000154158.k.b	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738.r #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00550000074784.a.b	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Monodontidae	ANCESTRAL SPECIES	9	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000154158.k.b	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00530000063371.A	ENSGT00390000008738.r #19	ENSGT00390000013284 #20	ENSGT00940000158858 #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00550000074784.a.b	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216
Beluga whale	MODERN SPECIES	77	DGKQ (ENSDLEG00000016886) #8	SLC26A1 (ENSDLEG00000016873) #9	IDUA (ENSDLEG00000016854) #10	FGFRL1 (ENSDLEG00000016841) #11	ENSDLEG00000016829 #13	SPON2 (ENSDLEG00000016801) #14	CTBP1 (ENSDLEG00000016785) #15	ENSDLEG00000016755	MAEA (ENSDLEG00000016731) #16	UVSSA (ENSDLEG00000016715) #17	NKX1-1 (ENSDLEG00000016706)	FAM53A (ENSDLEG00000016696)	SLBP (ENSDLEG00000016673) #19	TMEM129 (ENSDLEG00000016657) #20	ENSDLEG00000016641 #21	FGFR3 (ENSDLEG00000016588) #22	LETM1 (ENSDLEG00000016566) #23	ENSDLEG00000016553	NSD2 (ENSDLEG00000016523) #24	NELFA (ENSDLEG00000016475) #25	C4orf48 (ENSDLEG00000016453) #26	NAT8L (ENSDLEG00000016443) #27	POLN (ENSDLEG00000016047) #29	HAUS3 (ENSDLEG00000016006) #28	MXD4 (ENSDLEG00000015987) #30	ENSDLEG00000015973	ENSDLEG00000015957 #31	CFAP99 (ENSDLEG00000015790) #33	RNF4 (ENSDLEG00000015767) #35	FAM193A (ENSDLEG00000015632) #37	TNIP2 (ENSDLEG00000015610)
Narwhal	MODERN SPECIES	307	DGKQ (ENSMMNG00015009133) #8	SLC26A1 (ENSMMNG00015009113) #9	IDUA (ENSMMNG00015009092) #10	FGFRL1 (ENSMMNG00015009082) #11	ENSMMNG00015009070 #13	SPON2 (ENSMMNG00015009059) #14	CTBP1 (ENSMMNG00015009032) #15	ENSMMNG00015009007	MAEA (ENSMMNG00015008969) #16	UVSSA (ENSMMNG00015008918) #17	NKX1-1 (ENSMMNG00015008894)	FAM53A (ENSMMNG00015008881)	SLBP (ENSMMNG00015008857) #19	TMEM129 (ENSMMNG00015008823) #20	TACC3 (ENSMMNG00015008798) #21	FGFR3 (ENSMMNG00015008748) #22	LETM1 (ENSMMNG00015008712) #23	ENSMMNG00015008696	NSD2 (ENSMMNG00015008622) #24	NELFA (ENSMMNG00015008560) #25	C4orf48 (ENSMMNG00015008532) #26	ENSMMNG00015008518 #27	POLN (ENSMMNG00015008466) #29	HAUS3 (ENSMMNG00015008433) #28	MXD4 (ENSMMNG00015008416) #30	ENSMMNG00015008390 #31	ENSMMNG00015008379 #31	CFAP99 (ENSMMNG00015008357) #33	RNF4 (ENSMMNG00015008314) #35	FAM193A (ENSMMNG00015008181) #37	TNIP2 (ENSMMNG00015008095)
Vaquita	MODERN SPECIES	16	TMEM175 (ENSPSNG00000018137) #7	DGKQ (ENSPSNG00000018241) #8	IDUA (ENSPSNG00000018525) #10	SLC26A1 (ENSPSNG00000018577) #9	FGFRL1 (ENSPSNG00000018608) #11	ENSPSNG00000018647 #13	SPON2 (ENSPSNG00000018706) #14	CTBP1 (ENSPSNG00000018755) #15	ENSPSNG00000018860	MAEA (ENSPSNG00000018923) #16	UVSSA (ENSPSNG00000019027) #17	NKX1-1 (ENSPSNG00000019051)	FAM53A (ENSPSNG00000019099)	SLBP (ENSPSNG00000019131) #19	ENSPSNG00000019238 #20	FGFR3 (ENSPSNG00000019417) #22	LETM1 (ENSPSNG00000019524) #23	ENSPSNG00000019562	NSD2 (ENSPSNG00000019603) #24	NELFA (ENSPSNG00000019706) #25	C4orf48 (ENSPSNG00000019794) #26	NAT8L (ENSPSNG00000019815) #27	POLN (ENSPSNG00000019912) #29	HAUS3 (ENSPSNG00000019961) #28	MXD4 (ENSPSNG00000020007) #30	ENSPSNG00000020034 #31	ENSPSNG00000020080 #31	CFAP99 (ENSPSNG00000020141) #33	RNF4 (ENSPSNG00000020234) #35	FAM193A (ENSPSNG00000020338) #37	TNIP2 (ENSPSNG00000020458)
Pecora	ANCESTRAL SPECIES	15	ENSGT00940000159527	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Yarkand deer	DUPLICATION
Yarkand deer	MODERN SPECIES	29	GAK (ENSCHYG00000000449)	TMEM175 (ENSCHYG00000000372) #7	DGKQ (ENSCHYG00000000312) #8	SLC26A1 (ENSCHYG00000000284) #9	ENSCHYG00000000225 #10	FGFRL1 (ENSCHYG00000000201) #11	ENSCHYG00000000191 #13	SPON2 (ENSCHYG00000026323) #14	ENSCHYG00000026312	CTBP1 (ENSCHYG00000026282) #15	MAEA (ENSCHYG00000026208) #16	UVSSA (ENSCHYG00000026183) #17	SLBP (ENSCHYG00000026159) #19	TMEM129 (ENSCHYG00000026136) #20	ENSCHYG00000026110 #21	ENSCHYG00000026079 #22	LETM1 (ENSCHYG00000026028) #23	ENSCHYG00000025972 #24	NELFA (ENSCHYG00000025867) #25	NAT8L (ENSCHYG00000025851) #27	POLN (ENSCHYG00000025750) #29	HAUS3 (ENSCHYG00000025719) #28	ENSCHYG00000025702 #31	ENSCHYG00000025686	CFAP99 (ENSCHYG00000025667) #33	RNF4 (ENSCHYG00000025555) #35	ENSCHYG00000025523	FAM193A (ENSCHYG00000025484) #37	TNIP2 (ENSCHYG00000025444)	SH3BP2 (ENSCHYG00000025298)	ENSCHYG00000024729
Yarkand deer	MODERN SPECIES	681																ENSCHYG00000021370 #22
Percora_a	ANCESTRAL SPECIES	18	ENSGT00940000159527	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Siberian musk deer	MODERN SPECIES	354	ENSMMSG00000010313	TMEM175 (ENSMMSG00000010338) #7	DGKQ (ENSMMSG00000010406) #8	IDUA (ENSMMSG00000010506) #10	SLC26A1 (ENSMMSG00000010599) #9	FGFRL1 (ENSMMSG00000010628) #11	ENSMMSG00000010668 #13	SPON2 (ENSMMSG00000010709) #14	CTBP1 (ENSMMSG00000010749) #15	MAEA (ENSMMSG00000010850) #16	UVSSA (ENSMMSG00000011083) #17	NKX1-1 (ENSMMSG00000011124)	SLBP (ENSMMSG00000011149) #19	TMEM129 (ENSMMSG00000011303) #20	ENSMMSG00000011328 #21	FGFR3 (ENSMMSG00000011411) #22	LETM1 (ENSMMSG00000011470) #23	NSD2 (ENSMMSG00000011600) #24	NELFA (ENSMMSG00000011766) #25	C4orf48 (ENSMMSG00000011837) #26	NAT8L (ENSMMSG00000011858) #27	POLN (ENSMMSG00000011904) #29	HAUS3 (ENSMMSG00000011973) #28	MXD4 (ENSMMSG00000012003) #30	ENSMMSG00000012038 #31	ENSMMSG00000012065 #31	CFAP99 (ENSMMSG00000012099) #33	RNF4 (ENSMMSG00000015797) #35	FAM193A (ENSMMSG00000015827) #37	TNIP2 (ENSMMSG00000015869)	SH3BP2 (ENSMMSG00000015976)
Bovidae	ANCESTRAL SPECIES	18	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Bovinae	ANCESTRAL SPECIES	15	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
American bison	MODERN SPECIES	1489																FGFR3 (ENSBBBG00000008640) #22
Bos	ANCESTRAL SPECIES	15	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Bos_b	ANCESTRAL SPECIES	14	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00390000001735.e.b	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Cow	MODERN SPECIES	25	DGKQ (ENSBTAG00000017240) #8	SLC26A1 (ENSBTAG00000007001) #9	IDUA (ENSBTAG00000007002) #10	FGFRL1 (ENSBTAG00000027464) #11	ENSBTAG00000049784	ENSBTAG00000002247 #13	SPON2 (ENSBTAG00000004261) #14	CTBP1 (ENSBTAG00000008480) #15	MAEA (ENSBTAG00000012575) #16	UVSSA (ENSBTAG00000012577) #17	NKX1-1 (ENSBTAG00000048789)	ENSBTAG00000048974	SLBP (ENSBTAG00000001328) #19	TMEM129 (ENSBTAG00000011042) #20	TACC3 (ENSBTAG00000011044) #21	FGFR3 (ENSBTAG00000007164) #22	LETM1 (ENSBTAG00000020108) #23	NSD2 (ENSBTAG00000007986) #24	NELFA (ENSBTAG00000017921) #25	C6H4orf48 (ENSBTAG00000031395) #26	ENSBTAG00000053874 #27	POLN (ENSBTAG00000017296) #29	HAUS3 (ENSBTAG00000024787) #28	MXD4 (ENSBTAG00000015209) #30	ZFYVE28 (ENSBTAG00000006683) #31	CFAP99 (ENSBTAG00000054376) #33	RNF4 (ENSBTAG00000027453) #35	FAM193A (ENSBTAG00000009744) #37	TNIP2 (ENSBTAG00000015126)	SH3BP2 (ENSBTAG00000013996)	ADD1 (ENSBTAG00000021128)
Hybrid Bos Indicus	MODERN SPECIES	25	TMEM175 (ENSBIXG00005008181) #7	DGKQ (ENSBIXG00005008250) #8	SLC26A1 (ENSBIXG00005006076) #9	IDUA (ENSBIXG00005008330) #10	FGFRL1 (ENSBIXG00005008365) #11	ENSBIXG00005008383	ENSBIXG00005005681 #13	SPON2 (ENSBIXG00005006081) #14	CTBP1 (ENSBIXG00005008435) #15	MAEA (ENSBIXG00005008499) #16	UVSSA (ENSBIXG00005008522) #17	NKX1-1 (ENSBIXG00005008534)	ENSBIXG00005008565 #19	TMEM129 (ENSBIXG00005000225) #20	TACC3 (ENSBIXG00005008616) #21	FGFR3 (ENSBIXG00005008663) #22	LETM1 (ENSBIXG00005008685) #23	NSD2 (ENSBIXG00005008768) #24	NELFA (ENSBIXG00005008819) #25	C4orf48 (ENSBIXG00005006404) #26	NAT8L (ENSBIXG00005008838) #27	ENSBIXG00005006191	POLN (ENSBIXG00005000322) #29	ENSBIXG00005008965 #28	MXD4 (ENSBIXG00005008980) #30	ENSBIXG00005009002 #31	ENSBIXG00005009025 #31	CFAP99 (ENSBIXG00005009067) #33	RNF4 (ENSBIXG00005005461) #35	FAM193A (ENSBIXG00005009399) #37	TNIP2 (ENSBIXG00005009483)
Bos_a	ANCESTRAL SPECIES	61	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00990000210994	ENSGT00740000115581.f #12	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT01100000263480.a.a.a.a.b.a.a.a.b.a.b	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904 #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Domestic yak	MODERN SPECIES	25	IDUA (ENSBGRG00000019585) #10	FGFRL1 (ENSBGRG00000019493) #11	ENSBGRG00000019433	ENSBGRG00000019312 #12	ENSBGRG00000019257 #13	ENSBGRG00000019141 #14	ENSBGRG00000018881 #15	MAEA (ENSBGRG00000018651) #16	UVSSA (ENSBGRG00000018583) #17	NKX1-1 (ENSBGRG00000018511)	ENSBGRG00000018496	ENSBGRG00000018427	SLBP (ENSBGRG00000018109) #19	TMEM129 (ENSBGRG00000017981) #20	TACC3 (ENSBGRG00000017804) #21	FGFR3 (ENSBGRG00000017575) #22	LETM1 (ENSBGRG00000017241) #23	ENSBGRG00000017205 #24	NELFA (ENSBGRG00000017020) #25	C4orf48 (ENSBGRG00000016955) #26	ENSBGRG00000016908 #27	POLN (ENSBGRG00000016638) #29	ENSBGRG00000016598 #15	HAUS3 (ENSBGRG00000016524) #28	ENSBGRG00000016319 #30	ENSBGRG00000016224 #31	ENSBGRG00000016089 #31	CFAP99 (ENSBGRG00000015852) #33	RNF4 (ENSBGRG00000015725) #35	FAM193A (ENSBGRG00000015247) #37	TNIP2 (ENSBGRG00000015105)
Wild yak	MODERN SPECIES	798									MAEA (ENSBMUG00000021584) #16	UVSSA (ENSBMUG00000021556) #17	ENSBMUG00000021513	ENSBMUG00000021511	SLBP (ENSBMUG00000021468) #19	TMEM129 (ENSBMUG00000021381) #20	TACC3 (ENSBMUG00000021368) #21	FGFR3 (ENSBMUG00000020745) #22	LETM1 (ENSBMUG00000019981) #23	NSD2 (ENSBMUG00000019910) #24	NELFA (ENSBMUG00000019729) #25	POLN (ENSBMUG00000019557) #29	ENSBMUG00000019531
Caprinae	ANCESTRAL SPECIES	13	ENSGT00940000159527	ENSGT00390000015667 #7	ENSGT00940000159492 #8	ENSGT01100000263544.c.a.a.b #9	ENSGT00390000015494 #10	ENSGT00940000156736 #11	ENSGT00940000160999 #13	ENSGT00940000159900 #14	ENSGT00940000157061.a #15	ENSGT00940000153203.B #16	ENSGT00390000000377 #17	ENSGT00940000162861	ENSGT00390000008738 #19	ENSGT00390000013284 #20	ENSGT00940000158858.a #21	ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23	ENSGT00940000157429 #24	ENSGT00390000005342 #25	ENSGT00390000013043 #26	ENSGT00950000182932.B #27	ENSGT00940000159015 #29	ENSGT00390000011904.k #28	ENSGT00940000160120 #30	ENSGT00940000157217 #31	ENSGT00500000045231 #33	ENSGT00390000010318 #35	ENSGT00390000000973.a.b #37	ENSGT00510000046908.a.b	ENSGT00390000002216	ENSGT00940000158581
Goat	MODERN SPECIES	653																FGFR3 (ENSCHIG00000007253) #22
Rambouillet Sheep	MODERN SPECIES	22	ENSOARG00020011415	TMEM175 (ENSOARG00020011312) #7	DGKQ (ENSOARG00020011039) #8	SLC26A1 (ENSOARG00020011004) #9	IDUA (ENSOARG00020010816) #10	FGFRL1 (ENSOARG00020010713) #11	ENSOARG00020010628 #13	SPON2 (ENSOARG00020010589) #14	CTBP1 (ENSOARG00020010402) #15	MAEA (ENSOARG00020009920) #16	UVSSA (ENSOARG00020009863) #17	NKX1-1 (ENSOARG00020009848)	SLBP (ENSOARG00020023875) #19	TMEM129 (ENSOARG00020023839) #20	ENSOARG00020023797 #21	FGFR3 (ENSOARG00020023492) #22	LETM1 (ENSOARG00020023387) #23	NSD2 (ENSOARG00020023148) #24	NELFA (ENSOARG00020023088) #25	C4orf48 (ENSOARG00020023033) #26	NAT8L (ENSOARG00020023001) #27	ENSOARG00020022986	POLN (ENSOARG00020022890) #29	HAUS3 (ENSOARG00020022851) #28	MXD4 (ENSOARG00020022801) #30	ENSOARG00020022734 #31	ENSOARG00020022674 #31	CFAP99 (ENSOARG00020022601) #33	RNF4 (ENSOARG00020022503) #35	FAM193A (ENSOARG00020022278) #37	TNIP2 (ENSOARG00020022129)
Eulipotyphla	ANCESTRAL SPECIES	1869																ENSGT00940000159880 #22	ENSGT00950000183167.a.b.a #23
Common shrew	MODERN SPECIES	4355																ENSSARG00000002941 #22	LETM1 (ENSSARG00000002990) #23